BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041693
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 49 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLC 100
E+TCP+CLE + +P+SL CGH LC+ C +VS + + CP+C
Sbjct: 12 EVTCPICLELLTEPLSLDCGHSLCRAC----ITVSNKEAVTSMGGKSSCPVC 59
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 49 ELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCR 101
E+TCP+CLE + P+SL CGH C+ C + S++D + CP+CR
Sbjct: 19 EVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGE-----SSCPVCR 66
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 50 LTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCR 101
L CP+CLE + +PVS C HI CK C ++ L +CPLC+
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFC--------MLKLLNQKKGPSQCPLCK 65
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 49 ELTCPVCLETVFDPVSLTCGHILCKMC-ACSAASVSIVDGLKLADPTEKCPLCR 101
E+TCP+CLE + +PVS C H C+ C + S DG CP+CR
Sbjct: 19 EVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDG------KGNCPVCR 66
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 42 DSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCR 101
D+I E C +C+E + +PV+L C H LCK C S V+ L CP CR
Sbjct: 8 DAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCF-----QSTVEKASLC-----CPFCR 57
Query: 102 K 102
+
Sbjct: 58 R 58
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 45 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAG 104
+L E+ CP+CL+ + PV++ CGH C C S G KCPLC K
Sbjct: 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC--GF------FKCPLC-KTS 66
Query: 105 VYQGAIH 111
V + AI
Sbjct: 67 VRKNAIR 73
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 45 RLDIELTCPVCLETVFDPVSLTCGHILCKMC 75
L +E +C VCLE + +PV + CGH CK C
Sbjct: 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKAC 41
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 32/112 (28%)
Query: 11 NVSSSTAEAISSEGYRLTFNDDKV-----------SLSCQLFDSIRLDIELTCPVCLETV 59
N+ ++ + I S Y+ F D + SL QL RL E TC VC++
Sbjct: 249 NIFKNSLKEIDSTLYKNLFVDKNMKYIPTEDVSGLSLEEQLR---RLQEERTCKVCMDKE 305
Query: 60 FDPVSLTCGH-ILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGAI 110
V + CGH ++C+ CA S KCP+CR G+ +G +
Sbjct: 306 VSVVFIPCGHLVVCQECAPS---------------LRKCPICR--GIIKGTV 340
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 15/57 (26%)
Query: 45 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCR 101
RL E TC VCL+ V + CGH++C CA GL+L CP+CR
Sbjct: 9 RLQEERTCKVCLDRAVSIVFVPCGHLVCAECA---------PGLQL------CPICR 50
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 11/57 (19%)
Query: 46 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRK 102
L+ EL C +C E + V+L C H C C I +CP+CRK
Sbjct: 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKI-----------ECPICRK 95
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 33.9 bits (76), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 11/57 (19%)
Query: 46 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRK 102
L+ EL C +C E + V+L C H C C I +CP+CRK
Sbjct: 61 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKI-----------ECPICRK 106
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 33.9 bits (76), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 11/57 (19%)
Query: 46 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRK 102
L+ EL C +C E + V+L C H C C I +CP+CRK
Sbjct: 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKI-----------ECPICRK 95
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 33.1 bits (74), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 45 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLC 100
+L E+ CP+CL+ + PV++ CGH C C S G KCPLC
Sbjct: 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC--GFF------KCPLC 63
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 52 CPVCLETVFDPVSLTCGHILCKMC 75
C +CL+T PVSL C H+ C +C
Sbjct: 18 CAICLQTCVHPVSLPCKHVFCYLC 41
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 14/78 (17%)
Query: 41 FDSIRLDIELTCPVCLETVFD----PVSLTCGHILCKMCACSAASVSIVDGLKLADPTEK 96
D++R +E CP+C+E+ + P L CGH +C+ C + SI +G+ +
Sbjct: 9 LDALREVLE--CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI-NGV-------R 58
Query: 97 CPLCRKAGVYQGAIHLTE 114
CP C K LT+
Sbjct: 59 CPFCSKITRITSLTQLTD 76
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 46 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPL 99
L+ + CP+CL + + V CGH CK C I+ ++ D KCP+
Sbjct: 22 LESKYECPICLMALREAVQTPCGHRFCKAC--------IIKSIR--DAGHKCPV 65
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 16/58 (27%)
Query: 45 RLDIELTCPVCLETVFDPVSLTCGH-ILCKMCACSAASVSIVDGLKLADPTEKCPLCR 101
RL E TC VC++ V + CGH ++CK CA S KCP+CR
Sbjct: 20 RLQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSL---------------RKCPICR 62
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
P1 Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
Length = 118
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 46 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPL 99
L+ + CP+CL + + V CGH CK C I+ ++ D KCP+
Sbjct: 15 LESKYECPICLMALREAVQTPCGHRFCKAC--------IIKSIR--DAGHKCPV 58
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 18/67 (26%)
Query: 43 SIRLDIELTCPVCLETVFDPV-------SLTCGHILCKMCACSAASVSIVDGLKLADPTE 95
+R ++CP+C++ + V S CGH+ C C + D LK A+
Sbjct: 4 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQC--------LRDSLKNAN--- 52
Query: 96 KCPLCRK 102
CP CRK
Sbjct: 53 TCPTCRK 59
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 28/105 (26%)
Query: 13 SSSTAEAISSEGYRLTFNDDK-VSLSCQ---LFDSI------------RLDIELTCPVCL 56
+S +AEAI E ++LT + CQ L+D + +L+ C C
Sbjct: 28 ASDSAEAI--EAFQLTPQQQHLIREDCQNQKLWDEVLSHLVEGPNFLKKLEQSFMCVCCQ 85
Query: 57 ETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCR 101
E V+ PV+ C H +CK C + + CP CR
Sbjct: 86 ELVYQPVTTECFHNVCKDCLQRSFKAQVFS----------CPACR 120
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 46 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPL 99
L+ + CP+CL + + V CGH CK C I+ ++ D KCP+
Sbjct: 15 LESKYECPICLMALREAVQTPCGHRFCKAC--------IIKSIR--DAGHKCPV 58
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 16/70 (22%)
Query: 45 RLDIELTCPVCLETVFDPVSLTCGHIL-CKMCACSAASVSIVDGLKLADPTEKCPLCRKA 103
RL E C +C++ V + CGH++ CK C A+ +KCP+C
Sbjct: 21 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQC---------------AEAVDKCPMCYTV 65
Query: 104 GVYQGAIHLT 113
++ I ++
Sbjct: 66 ITFKQKIFMS 75
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 29.6 bits (65), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 18/66 (27%)
Query: 44 IRLDIELTCPVCLETVFDPV-------SLTCGHILCKMCACSAASVSIVDGLKLADPTEK 96
+R ++CP+C++ + V S CGH+ C C + D LK A+
Sbjct: 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQC--------LRDSLKNAN---T 58
Query: 97 CPLCRK 102
CP CRK
Sbjct: 59 CPTCRK 64
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 29.3 bits (64), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 18/60 (30%)
Query: 50 LTCPVCLETVFDPV-------SLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRK 102
++CP+C++ + V S CGH+ C C + D LK A+ CP CRK
Sbjct: 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQC--------LRDSLKNAN---TCPTCRK 56
Score = 29.3 bits (64), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 18/60 (30%)
Query: 50 LTCPVCLETVFDPV-------SLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRK 102
++CP+C++ + V S CGH+ C C + D LK A+ CP CRK
Sbjct: 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQC--------LRDSLKNAN---TCPTCRK 121
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3
Ubiquitin- Protein Ligase Uhrf1
Length = 124
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 39 QLFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMC 75
QLF S +++ C C E VF P++ C H +CK C
Sbjct: 43 QLFLS-KVEETFQCICCQELVFRPITTVCQHNVCKDC 78
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 29.3 bits (64), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 10/54 (18%)
Query: 46 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPL 99
L + CP+CL + + V CGH CK C I+ ++ D KCP+
Sbjct: 3 LGSKYECPICLMALREAVQTPCGHRFCKAC--------IIKSIR--DAGHKCPV 46
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 29.3 bits (64), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 18/60 (30%)
Query: 50 LTCPVCLETVFDPV-------SLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRK 102
++CP+C++ + V S CGH+ C C + D LK A+ CP CRK
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQC--------LRDSLKNAN---TCPTCRK 52
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 16/70 (22%)
Query: 45 RLDIELTCPVCLETVFDPVSLTCGHIL-CKMCACSAASVSIVDGLKLADPTEKCPLCRKA 103
RL E C +C++ V + CGH++ CK C A+ +KCP+C
Sbjct: 20 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQC---------------AEAVDKCPMCYTV 64
Query: 104 GVYQGAIHLT 113
++ I ++
Sbjct: 65 ITFKQKIFMS 74
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 46 LDIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAG 104
L EL CP+CL+ + + ++ C H C C +A L ++CP CRK
Sbjct: 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITA----------LRSGNKECPTCRKKL 100
Query: 105 VYQGAI 110
V + ++
Sbjct: 101 VSKRSL 106
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 50 LTCPVCLETVFDPVSLTCGHILCKMC 75
++C +C + DPV +C H+ C++C
Sbjct: 24 ISCQICEHILADPVETSCKHLFCRIC 49
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 16/70 (22%)
Query: 45 RLDIELTCPVCLETVFDPVSLTCGHIL-CKMCACSAASVSIVDGLKLADPTEKCPLCRKA 103
RL E C +C++ V + CGH++ CK C A+ +KCP+C
Sbjct: 20 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQC---------------AEAVDKCPMCYTV 64
Query: 104 GVYQGAIHLT 113
++ I ++
Sbjct: 65 ITFKQKILMS 74
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 46 LDIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAG 104
L EL CP+CL+ + + ++ C H C C +A L ++CP CRK
Sbjct: 31 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITA----------LRSGNKECPTCRKKL 80
Query: 105 VYQGAIH 111
V + ++
Sbjct: 81 VSKRSLR 87
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Query: 46 LDIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAG 104
L EL CP+CL+ + + ++ C H C C I+ L+ + ++CP CRK
Sbjct: 50 LHSELMCPICLDMLKNTMTTKECLHRFCADC--------IITALRSGN--KECPTCRKKL 99
Query: 105 VYQGAIH 111
V + ++
Sbjct: 100 VSKRSLR 106
>pdb|2YDQ|A Chain A, Cpoga D298n In Complex With Hoga-Derived O-Glcnac Peptide
pdb|2YDR|A Chain A, Cpoga D298n In Complex With P53-Derived O-Glcnac Peptide
pdb|2YDS|A Chain A, Cpoga D298n In Complex With Tab1-Derived O-Glcnac Peptide
Length = 590
Score = 26.6 bits (57), Expect = 5.9, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 12 VSSSTAEAISSEGYRLTFNDDKVSL 36
++ +TAE + EGY L ND K+++
Sbjct: 92 LNGTTAENLKEEGYALVSNDGKIAI 116
>pdb|2XPK|A Chain A, Cell-Penetrant, Nanomolar O-Glcnacase Inhibitors Selective
Against Lysosomal Hexosaminidases
pdb|2XPK|B Chain B, Cell-Penetrant, Nanomolar O-Glcnacase Inhibitors Selective
Against Lysosomal Hexosaminidases
Length = 594
Score = 26.6 bits (57), Expect = 5.9, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 12 VSSSTAEAISSEGYRLTFNDDKVSL 36
++ +TAE + EGY L ND K+++
Sbjct: 90 LNGTTAENLKEEGYALVSNDGKIAI 114
>pdb|2V5D|A Chain A, Structure Of A Family 84 Glycoside Hydrolase And A Family
32 Carbohydrate-Binding Module In Tandem From
Clostridium Perfringens
Length = 737
Score = 26.6 bits (57), Expect = 5.9, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 12 VSSSTAEAISSEGYRLTFNDDKVSL 36
++ +TAE + EGY L ND K+++
Sbjct: 90 LNGTTAENLKEEGYALVSNDGKIAI 114
>pdb|2J62|A Chain A, Structure Of A Bacterial O-glcnacase In Complex With
Glcnacstatin
pdb|2J62|B Chain B, Structure Of A Bacterial O-glcnacase In Complex With
Glcnacstatin
pdb|2WB5|A Chain A, Glcnacstatins Are Nanomolar Inhibitors Of Human
O-Glcnacase Inducing Cellular Hyper-O-Glcnacylation
pdb|2WB5|B Chain B, Glcnacstatins Are Nanomolar Inhibitors Of Human
O-Glcnacase Inducing Cellular Hyper-O-Glcnacylation
Length = 594
Score = 26.6 bits (57), Expect = 5.9, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 12 VSSSTAEAISSEGYRLTFNDDKVSL 36
++ +TAE + EGY L ND K+++
Sbjct: 90 LNGTTAENLKEEGYALVSNDGKIAI 114
>pdb|2CBI|A Chain A, Structure Of The Clostridium Perfringens Nagj Family 84
Glycoside Hydrolase, A Homologue Of Human O-Glcnacase
pdb|2CBI|B Chain B, Structure Of The Clostridium Perfringens Nagj Family 84
Glycoside Hydrolase, A Homologue Of Human O-Glcnacase
pdb|2CBJ|A Chain A, Structure Of The Clostridium Perfringens Nagj Family 84
Glycoside Hydrolase, A Homologue Of Human O-Glcnacase In
Complex With Pugnac
pdb|2CBJ|B Chain B, Structure Of The Clostridium Perfringens Nagj Family 84
Glycoside Hydrolase, A Homologue Of Human O-Glcnacase In
Complex With Pugnac
pdb|2V5C|A Chain A, Family 84 Glycoside Hydrolase From Clostridium
Perfringens, 2.1 Angstrom Structure
pdb|2V5C|B Chain B, Family 84 Glycoside Hydrolase From Clostridium
Perfringens, 2.1 Angstrom Structure
pdb|2VUR|A Chain A, Chemical Dissection Of The Link Between Streptozotocin, O-
Glcnac And Pancreatic Cell Death
pdb|2VUR|B Chain B, Chemical Dissection Of The Link Between Streptozotocin, O-
Glcnac And Pancreatic Cell Death
pdb|2X0Y|A Chain A, Screening-Based Discovery Of Drug-Like O-Glcnacase
Inhibitor Scaffolds
pdb|2X0Y|B Chain B, Screening-Based Discovery Of Drug-Like O-Glcnacase
Inhibitor Scaffolds
Length = 594
Score = 26.6 bits (57), Expect = 5.9, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 12 VSSSTAEAISSEGYRLTFNDDKVSL 36
++ +TAE + EGY L ND K+++
Sbjct: 90 LNGTTAENLKEEGYALVSNDGKIAI 114
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 15/70 (21%)
Query: 32 DKVSLSCQLFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLA 91
++ L C++ + +L C +C E D CGH++C C S
Sbjct: 322 EQFELXCEMGSTFQL-----CKICAENDKDVKIEPCGHLMCTSCLTSWQESE-------- 368
Query: 92 DPTEKCPLCR 101
+ CP CR
Sbjct: 369 --GQGCPFCR 376
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 15/70 (21%)
Query: 32 DKVSLSCQLFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLA 91
++ L C++ + +L C +C E D CGH++C C + DG
Sbjct: 326 EQYELYCEMGSTFQL-----CKICAENDKDVKIEPCGHLMCTSCLTAWQE---SDG---- 373
Query: 92 DPTEKCPLCR 101
+ CP CR
Sbjct: 374 ---QGCPFCR 380
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 15/70 (21%)
Query: 32 DKVSLSCQLFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLA 91
++ L C++ + +L C +C E D CGH++C C S
Sbjct: 322 EQYELXCEMGSTFQL-----CKICAENDKDVKIEPCGHLMCTSCLTSWQESE-------- 368
Query: 92 DPTEKCPLCR 101
+ CP CR
Sbjct: 369 --GQGCPFCR 376
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 15/70 (21%)
Query: 32 DKVSLSCQLFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLA 91
++ L C++ + +L C +C E D CGH++C C S
Sbjct: 320 EQYELYCEMGSTFQL-----CKICAENDKDVKIEPCGHLMCTSCLTSWQESE-------- 366
Query: 92 DPTEKCPLCR 101
+ CP CR
Sbjct: 367 --GQGCPFCR 374
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 15/70 (21%)
Query: 32 DKVSLSCQLFDSIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLA 91
++ L C++ + +L C +C E D CGH++C C S
Sbjct: 320 EQYELYCEMGSTFQL-----CKICAENDKDVKIEPCGHLMCTSCLTSWQESE-------- 366
Query: 92 DPTEKCPLCR 101
+ CP CR
Sbjct: 367 --GQGCPFCR 374
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,291,361
Number of Sequences: 62578
Number of extensions: 149829
Number of successful extensions: 328
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 56
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)