Query 041693
Match_columns 156
No_of_seqs 206 out of 1189
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 16:33:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041693.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041693hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t1h_A Gspef-atpub14, armadill 99.7 1.9E-18 6.5E-23 108.8 4.4 70 45-128 4-73 (78)
2 2kr4_A Ubiquitin conjugation f 99.7 4.1E-18 1.4E-22 109.2 4.7 71 45-130 10-80 (85)
3 3ztg_A E3 ubiquitin-protein li 99.7 9.4E-18 3.2E-22 108.7 6.3 76 43-130 7-83 (92)
4 2kre_A Ubiquitin conjugation f 99.7 1.1E-17 3.9E-22 110.2 4.8 70 45-129 25-94 (100)
5 1wgm_A Ubiquitin conjugation f 99.7 2.8E-17 9.5E-22 108.0 6.1 72 44-130 17-89 (98)
6 2y43_A E3 ubiquitin-protein li 99.7 2.2E-17 7.6E-22 108.4 3.8 72 45-131 18-90 (99)
7 2ckl_A Polycomb group ring fin 99.7 4.2E-17 1.4E-21 108.8 4.8 74 45-129 11-85 (108)
8 4ayc_A E3 ubiquitin-protein li 99.7 4.3E-17 1.5E-21 113.3 4.4 68 46-126 50-117 (138)
9 1jm7_B BARD1, BRCA1-associated 99.6 5.4E-17 1.8E-21 109.8 3.5 71 43-130 16-87 (117)
10 3fl2_A E3 ubiquitin-protein li 99.6 5.5E-17 1.9E-21 110.7 3.4 71 45-128 48-118 (124)
11 3l11_A E3 ubiquitin-protein li 99.6 4.5E-17 1.5E-21 109.7 2.4 78 45-132 11-91 (115)
12 3lrq_A E3 ubiquitin-protein li 99.6 3.6E-17 1.2E-21 107.8 0.7 58 43-110 16-74 (100)
13 2yu4_A E3 SUMO-protein ligase 99.6 3.3E-16 1.1E-20 102.1 4.6 75 46-129 4-82 (94)
14 2ysl_A Tripartite motif-contai 99.6 6.3E-16 2.2E-20 95.8 5.5 57 44-108 15-71 (73)
15 2djb_A Polycomb group ring fin 99.6 4E-16 1.4E-20 96.7 3.7 57 43-110 9-66 (72)
16 2ecy_A TNF receptor-associated 99.6 8.4E-16 2.9E-20 93.6 4.9 55 44-108 10-64 (66)
17 1z6u_A NP95-like ring finger p 99.6 5.1E-16 1.8E-20 109.4 4.0 70 46-128 75-144 (150)
18 2yur_A Retinoblastoma-binding 99.6 5.6E-16 1.9E-20 96.6 3.5 56 43-107 9-65 (74)
19 1jm7_A BRCA1, breast cancer ty 99.6 6.9E-16 2.4E-20 103.2 4.0 58 45-110 17-74 (112)
20 2csy_A Zinc finger protein 183 99.6 2.5E-15 8.6E-20 95.0 4.8 50 45-105 11-60 (81)
21 2c2l_A CHIP, carboxy terminus 99.6 1.3E-15 4.6E-20 116.3 4.1 70 45-128 204-273 (281)
22 2f42_A STIP1 homology and U-bo 99.6 1.7E-15 5.7E-20 109.3 4.4 73 43-129 100-172 (179)
23 2egp_A Tripartite motif-contai 99.6 8.7E-16 3E-20 96.5 2.5 61 44-108 7-67 (79)
24 2ecw_A Tripartite motif-contai 99.6 4.6E-15 1.6E-19 94.2 5.7 61 44-109 14-74 (85)
25 2ysj_A Tripartite motif-contai 99.6 3.1E-15 1E-19 90.2 4.3 49 44-100 15-63 (63)
26 2ckl_B Ubiquitin ligase protei 99.5 9.9E-16 3.4E-20 109.3 1.6 73 44-129 49-122 (165)
27 2d8t_A Dactylidin, ring finger 99.5 3.4E-15 1.2E-19 92.2 3.7 50 46-106 12-61 (71)
28 2ecv_A Tripartite motif-contai 99.5 7E-15 2.4E-19 93.3 4.3 61 44-109 14-74 (85)
29 3knv_A TNF receptor-associated 99.5 1.2E-15 4E-20 106.5 0.6 53 44-106 26-78 (141)
30 2ct2_A Tripartite motif protei 99.5 8.1E-15 2.8E-19 93.8 4.1 59 43-109 9-71 (88)
31 3ng2_A RNF4, snurf, ring finge 99.5 3E-15 1E-19 92.1 1.7 55 45-110 6-67 (71)
32 3hct_A TNF receptor-associated 99.5 4.9E-15 1.7E-19 100.2 2.6 56 44-109 13-68 (118)
33 1g25_A CDK-activating kinase a 99.5 1.2E-14 4E-19 88.2 3.3 52 48-109 2-58 (65)
34 2ecj_A Tripartite motif-contai 99.5 1.7E-14 5.8E-19 85.3 3.8 49 44-100 10-58 (58)
35 2ea6_A Ring finger protein 4; 99.5 9.2E-15 3.1E-19 89.3 1.8 50 45-105 11-67 (69)
36 1rmd_A RAG1; V(D)J recombinati 99.5 8.5E-15 2.9E-19 98.6 1.8 53 47-109 21-73 (116)
37 1bor_A Transcription factor PM 99.5 3.4E-14 1.2E-18 83.8 3.7 47 47-107 4-50 (56)
38 3htk_C E3 SUMO-protein ligase 99.5 4E-14 1.4E-18 107.0 4.7 71 45-128 177-250 (267)
39 2xeu_A Ring finger protein 4; 99.4 1.2E-14 4.1E-19 87.5 1.1 51 48-109 2-59 (64)
40 2ect_A Ring finger protein 126 99.4 6.3E-14 2.1E-18 87.8 4.3 54 45-109 11-67 (78)
41 1iym_A EL5; ring-H2 finger, ub 99.4 1E-13 3.4E-18 81.1 4.7 49 46-105 2-54 (55)
42 1e4u_A Transcriptional repress 99.4 1.2E-13 4E-18 86.9 4.8 54 45-108 7-64 (78)
43 2ecn_A Ring finger protein 141 99.4 3.9E-14 1.3E-18 87.0 1.6 53 44-108 10-62 (70)
44 3hcs_A TNF receptor-associated 99.4 5.7E-14 2E-18 100.5 2.7 56 44-109 13-68 (170)
45 2l0b_A E3 ubiquitin-protein li 99.4 2.9E-13 9.9E-18 87.4 5.3 49 46-105 37-88 (91)
46 2kiz_A E3 ubiquitin-protein li 99.4 1.3E-13 4.4E-18 84.4 3.3 51 45-106 10-63 (69)
47 1chc_A Equine herpes virus-1 r 99.4 1.1E-13 3.9E-18 84.4 2.9 48 47-105 3-51 (68)
48 2ecm_A Ring finger and CHY zin 99.4 1.4E-13 4.9E-18 80.4 3.0 47 48-105 4-54 (55)
49 4ap4_A E3 ubiquitin ligase RNF 99.4 2E-13 6.8E-18 93.3 2.5 52 47-109 5-63 (133)
50 1x4j_A Ring finger protein 38; 99.3 2.3E-13 7.8E-18 84.7 2.2 49 47-106 21-72 (75)
51 2ep4_A Ring finger protein 24; 99.3 3.2E-13 1.1E-17 83.7 2.7 51 45-106 11-64 (74)
52 1v87_A Deltex protein 2; ring- 99.3 2.6E-12 8.9E-17 86.0 4.0 54 47-106 23-94 (114)
53 4ic3_A E3 ubiquitin-protein li 99.2 1E-12 3.5E-17 81.7 1.0 47 45-106 20-67 (74)
54 2ecg_A Baculoviral IAP repeat- 99.2 6.3E-13 2.2E-17 82.8 -0.0 46 46-106 22-68 (75)
55 1wim_A KIAA0161 protein; ring 99.2 5.5E-12 1.9E-16 81.8 3.2 53 48-103 4-61 (94)
56 2vje_A E3 ubiquitin-protein li 99.2 5.5E-12 1.9E-16 76.2 2.6 49 46-105 5-56 (64)
57 2ecl_A Ring-box protein 2; RNF 99.2 1.3E-11 4.6E-16 77.9 4.0 48 48-106 14-76 (81)
58 2y1n_A E3 ubiquitin-protein li 99.2 1.4E-11 4.7E-16 98.2 3.8 53 46-108 329-381 (389)
59 4ap4_A E3 ubiquitin ligase RNF 99.1 4.8E-12 1.6E-16 86.4 0.4 52 47-109 70-128 (133)
60 2bay_A PRE-mRNA splicing facto 99.1 1.5E-11 5.1E-16 73.6 1.3 52 49-111 3-55 (61)
61 2vje_B MDM4 protein; proto-onc 99.1 2.5E-11 8.5E-16 73.1 2.0 47 48-105 6-55 (63)
62 3dpl_R Ring-box protein 1; ubi 99.1 1.2E-10 4.2E-15 77.1 4.6 48 48-106 36-101 (106)
63 2yho_A E3 ubiquitin-protein li 99.1 5.8E-11 2E-15 74.6 2.8 46 46-106 15-61 (79)
64 2ea5_A Cell growth regulator w 99.0 9.2E-11 3.1E-15 71.6 2.9 45 47-106 13-58 (68)
65 3t6p_A Baculoviral IAP repeat- 98.9 2.5E-10 8.4E-15 90.1 1.0 47 45-106 291-338 (345)
66 4a0k_B E3 ubiquitin-protein li 98.8 6.1E-10 2.1E-14 74.9 0.2 46 49-105 48-111 (117)
67 2d8s_A Cellular modulator of i 98.7 2.6E-08 8.8E-13 62.6 4.7 52 47-107 13-71 (80)
68 2ct0_A Non-SMC element 1 homol 98.3 9.4E-07 3.2E-11 54.5 5.3 50 48-106 14-64 (74)
69 3vk6_A E3 ubiquitin-protein li 98.2 6.5E-07 2.2E-11 57.8 2.8 46 51-106 3-49 (101)
70 3k1l_B Fancl; UBC, ring, RWD, 97.9 4.7E-06 1.6E-10 65.3 3.4 60 47-106 306-373 (381)
71 3m62_A Ubiquitin conjugation f 97.9 1.2E-05 4.2E-10 70.3 5.2 76 44-134 886-962 (968)
72 1vyx_A ORF K3, K3RING; zinc-bi 97.9 1E-05 3.4E-10 47.8 3.3 50 47-105 4-58 (60)
73 2jun_A Midline-1; B-BOX, TRIM, 97.5 4.7E-05 1.6E-09 49.2 2.4 31 48-78 2-35 (101)
74 3nw0_A Non-structural maintena 96.5 0.0031 1.1E-07 47.1 4.6 49 49-106 180-229 (238)
75 2cs3_A Protein C14ORF4, MY039 95.4 0.033 1.1E-06 34.2 4.9 36 47-82 13-52 (93)
76 2ko5_A Ring finger protein Z; 94.9 0.012 4.2E-07 37.3 2.0 46 48-106 27-73 (99)
77 3i2d_A E3 SUMO-protein ligase 94.3 0.015 5.1E-07 46.0 1.7 56 48-110 248-304 (371)
78 4fo9_A E3 SUMO-protein ligase 93.6 0.025 8.5E-07 44.5 1.7 56 47-109 213-269 (360)
79 2lbm_A Transcriptional regulat 87.6 1.5 5E-05 29.9 5.7 53 48-102 62-116 (142)
80 1weo_A Cellulose synthase, cat 84.8 1.2 4E-05 27.9 3.7 48 48-105 15-69 (93)
81 2lri_C Autoimmune regulator; Z 84.0 1.8 6.1E-05 25.4 4.2 48 48-104 11-60 (66)
82 3mjh_B Early endosome antigen 83.8 0.097 3.3E-06 26.8 -1.3 17 48-64 4-20 (34)
83 1vfy_A Phosphatidylinositol-3- 83.6 0.8 2.7E-05 27.3 2.6 29 49-77 11-43 (73)
84 1m3v_A FLIN4, fusion of the LI 83.5 0.96 3.3E-05 29.6 3.2 47 49-106 32-81 (122)
85 1joc_A EEA1, early endosomal a 81.6 0.64 2.2E-05 30.9 1.7 30 49-78 69-102 (125)
86 3ql9_A Transcriptional regulat 80.5 1.6 5.6E-05 29.2 3.4 55 48-102 56-110 (129)
87 1z2q_A LM5-1; membrane protein 80.4 1 3.5E-05 27.6 2.3 31 48-78 20-54 (84)
88 2yw8_A RUN and FYVE domain-con 80.3 1 3.5E-05 27.5 2.2 31 48-78 18-52 (82)
89 2l5u_A Chromodomain-helicase-D 80.3 1.8 6E-05 24.9 3.1 48 46-102 8-57 (61)
90 2xqn_T Testin, TESS; metal-bin 80.1 1.3 4.5E-05 28.9 2.9 46 48-106 29-75 (126)
91 1x4u_A Zinc finger, FYVE domai 79.2 1.2 4E-05 27.4 2.2 31 48-78 13-47 (84)
92 1dvp_A HRS, hepatocyte growth 79.0 0.92 3.2E-05 32.9 2.0 34 45-78 157-194 (220)
93 1f62_A Transcription factor WS 77.4 2.2 7.6E-05 23.3 2.9 46 51-103 2-50 (51)
94 1wen_A Inhibitor of growth fam 77.3 4.4 0.00015 24.0 4.4 48 47-104 14-66 (71)
95 1wil_A KIAA1045 protein; ring 77.2 4.9 0.00017 24.8 4.5 57 44-101 10-74 (89)
96 2gmg_A Hypothetical protein PF 76.8 0.73 2.5E-05 29.7 0.8 30 60-105 66-95 (105)
97 1wfk_A Zinc finger, FYVE domai 76.4 1.2 4.2E-05 27.6 1.8 31 48-78 8-42 (88)
98 2xjy_A Rhombotin-2; oncoprotei 75.6 2 6.9E-05 28.1 2.8 33 48-80 28-63 (131)
99 1weu_A Inhibitor of growth fam 75.3 4.8 0.00016 25.2 4.3 49 46-104 33-86 (91)
100 2jne_A Hypothetical protein YF 74.7 0.12 4.2E-06 32.8 -3.2 40 50-105 33-72 (101)
101 3zyq_A Hepatocyte growth facto 74.1 1.6 5.6E-05 31.8 2.2 33 46-78 161-197 (226)
102 2k16_A Transcription initiatio 74.1 1.2 4.1E-05 26.5 1.2 52 47-105 16-70 (75)
103 1y02_A CARP2, FYVE-ring finger 73.8 1.5 5.1E-05 29.0 1.7 33 47-79 17-53 (120)
104 2rgt_A Fusion of LIM/homeobox 73.8 3.6 0.00012 28.2 3.9 33 48-80 32-64 (169)
105 2ct7_A Ring finger protein 31; 73.4 1.2 4.1E-05 27.4 1.1 29 51-79 27-61 (86)
106 3t7l_A Zinc finger FYVE domain 72.9 1.8 6.3E-05 26.9 1.9 32 48-79 19-54 (90)
107 1z60_A TFIIH basal transcripti 72.5 3.3 0.00011 23.7 2.8 40 50-100 16-58 (59)
108 1mm2_A MI2-beta; PHD, zinc fin 71.9 2.4 8E-05 24.3 2.1 49 47-104 7-57 (61)
109 2jtn_A LIM domain-binding prot 71.8 3.1 0.00011 29.0 3.1 32 49-80 87-118 (182)
110 2pv0_B DNA (cytosine-5)-methyl 69.3 5.7 0.00019 31.5 4.4 37 66-103 112-148 (386)
111 2cup_A Skeletal muscle LIM-pro 69.2 2.3 7.7E-05 26.5 1.8 46 48-106 32-78 (101)
112 1rut_X Flinc4, fusion protein 68.0 1.3 4.6E-05 31.1 0.5 33 48-80 31-66 (188)
113 2lv9_A Histone-lysine N-methyl 67.6 5 0.00017 25.2 3.1 46 48-102 27-75 (98)
114 2jmi_A Protein YNG1, ING1 homo 67.2 3.3 0.00011 25.9 2.1 48 45-102 22-75 (90)
115 3fyb_A Protein of unknown func 66.8 2.1 7.2E-05 27.2 1.2 12 70-81 41-52 (104)
116 2o35_A Hypothetical protein DU 66.7 2.1 7.2E-05 27.2 1.2 12 70-81 42-53 (105)
117 2jrp_A Putative cytoplasmic pr 66.5 0.27 9.3E-06 30.3 -2.9 10 50-59 3-12 (81)
118 2jmo_A Parkin; IBR, E3 ligase, 65.6 1 3.5E-05 27.4 -0.4 31 49-79 25-68 (80)
119 2fiy_A Protein FDHE homolog; F 65.2 1 3.5E-05 34.7 -0.6 46 47-103 180-231 (309)
120 1zbd_B Rabphilin-3A; G protein 65.0 2.5 8.4E-05 28.4 1.3 30 47-76 53-87 (134)
121 1wd2_A Ariadne-1 protein homol 65.0 0.79 2.7E-05 26.4 -1.0 32 49-80 6-45 (60)
122 1iml_A CRIP, cysteine rich int 63.7 7.5 0.00026 22.6 3.3 44 48-104 26-71 (76)
123 3o36_A Transcription intermedi 62.0 3.9 0.00013 28.7 2.0 48 48-104 3-52 (184)
124 3mpx_A FYVE, rhogef and PH dom 60.8 1.8 6E-05 34.3 0.0 33 48-80 374-410 (434)
125 1wff_A Riken cDNA 2810002D23 p 60.8 4.7 0.00016 24.9 1.9 26 49-74 25-52 (85)
126 3lqh_A Histone-lysine N-methyl 60.7 7.2 0.00024 27.6 3.2 53 50-104 3-64 (183)
127 2yql_A PHD finger protein 21A; 60.2 1.4 4.8E-05 24.7 -0.5 47 47-102 7-55 (56)
128 2zet_C Melanophilin; complex, 59.4 4.1 0.00014 28.0 1.7 46 48-103 67-117 (153)
129 2l43_A N-teminal domain from h 59.1 5.2 0.00018 24.7 2.0 52 45-105 21-77 (88)
130 2ku3_A Bromodomain-containing 59.1 11 0.00036 22.3 3.3 48 46-102 13-65 (71)
131 3u5n_A E3 ubiquitin-protein li 55.1 3.5 0.00012 29.5 0.8 48 48-104 6-55 (207)
132 1fp0_A KAP-1 corepressor; PHD 53.6 10 0.00035 23.5 2.6 49 47-104 23-73 (88)
133 3v43_A Histone acetyltransfera 52.6 6.6 0.00022 25.2 1.7 45 51-102 63-111 (112)
134 2ro1_A Transcription intermedi 51.5 8.3 0.00028 27.2 2.2 46 50-104 3-50 (189)
135 3c6w_A P28ING5, inhibitor of g 51.5 4.6 0.00016 22.9 0.7 46 47-102 7-57 (59)
136 2g6q_A Inhibitor of growth pro 51.2 4.6 0.00016 23.2 0.7 45 47-102 9-59 (62)
137 3a1b_A DNA (cytosine-5)-methyl 50.8 17 0.00058 25.1 3.6 52 49-103 79-134 (159)
138 3ttc_A HYPF, transcriptional r 50.3 7.5 0.00026 33.0 2.1 55 47-104 15-99 (657)
139 4g9i_A Hydrogenase maturation 48.4 14 0.00046 32.0 3.5 57 47-106 104-190 (772)
140 1we9_A PHD finger family prote 48.4 4.6 0.00016 23.1 0.4 51 47-103 4-58 (64)
141 2puy_A PHD finger protein 21A; 47.9 4.4 0.00015 22.9 0.3 47 48-103 4-52 (60)
142 1x62_A C-terminal LIM domain p 47.7 13 0.00045 21.8 2.5 30 47-76 13-42 (79)
143 2yt5_A Metal-response element- 47.6 1.8 6E-05 25.1 -1.6 53 47-104 4-62 (66)
144 2e6s_A E3 ubiquitin-protein li 47.5 8 0.00027 23.2 1.4 45 51-102 28-76 (77)
145 1wg2_A Zinc finger (AN1-like) 47.3 14 0.00047 21.5 2.3 27 48-74 14-41 (64)
146 3c5k_A HD6, histone deacetylas 46.8 8.5 0.00029 24.8 1.5 27 49-75 24-50 (109)
147 2d8v_A Zinc finger FYVE domain 46.7 13 0.00046 21.7 2.2 32 47-79 6-38 (67)
148 3asl_A E3 ubiquitin-protein li 46.5 8.5 0.00029 22.6 1.4 46 51-103 20-69 (70)
149 2vnf_A ING 4, P29ING4, inhibit 46.0 5.9 0.0002 22.5 0.6 46 47-102 8-58 (60)
150 3vhs_A ATPase wrnip1; zinc fin 45.6 4.3 0.00015 19.1 -0.0 12 49-60 6-17 (29)
151 1wfh_A Zinc finger (AN1-like) 45.0 13 0.00044 21.6 2.0 27 48-74 14-41 (64)
152 1x4v_A Hypothetical protein LO 45.0 14 0.00049 21.3 2.2 27 48-74 11-40 (63)
153 2jvx_A NF-kappa-B essential mo 44.9 2.4 8.3E-05 20.5 -1.0 17 49-65 3-19 (28)
154 1l8d_A DNA double-strand break 44.6 35 0.0012 21.4 4.3 13 94-106 47-59 (112)
155 3vth_A Hydrogenase maturation 44.4 11 0.00036 32.6 2.2 57 47-106 109-195 (761)
156 2e6r_A Jumonji/ARID domain-con 44.1 2.6 9E-05 26.3 -1.2 51 46-103 13-66 (92)
157 1wfl_A Zinc finger protein 216 43.7 16 0.00055 21.8 2.3 26 49-74 25-51 (74)
158 2l4z_A DNA endonuclease RBBP8, 43.0 15 0.00052 23.8 2.4 14 49-62 61-74 (123)
159 1wfp_A Zinc finger (AN1-like) 42.9 31 0.0011 20.6 3.5 27 48-74 24-51 (74)
160 2ysm_A Myeloid/lymphoid or mix 42.6 11 0.00037 24.0 1.5 48 47-101 5-55 (111)
161 3shb_A E3 ubiquitin-protein li 42.4 7.5 0.00026 23.4 0.7 45 51-102 28-76 (77)
162 1j2o_A FLIN2, fusion of rhombo 42.3 31 0.0011 21.7 3.8 33 48-80 29-64 (114)
163 2cur_A Skeletal muscle LIM-pro 40.9 36 0.0012 19.0 3.6 33 48-80 30-63 (69)
164 2d8x_A Protein pinch; LIM doma 40.8 11 0.00037 21.5 1.2 32 49-80 31-63 (70)
165 1b8t_A Protein (CRP1); LIM dom 40.5 28 0.00097 24.1 3.7 43 49-104 142-185 (192)
166 1x61_A Thyroid receptor intera 40.1 31 0.0011 19.5 3.3 33 48-80 32-65 (72)
167 3ask_A E3 ubiquitin-protein li 40.1 9.3 0.00032 28.0 1.0 46 51-103 176-225 (226)
168 1x64_A Alpha-actinin-2 associa 40.0 26 0.0009 20.9 3.0 41 47-106 23-63 (89)
169 1x4w_A Hypothetical protein FL 39.8 8.3 0.00029 22.7 0.6 27 48-74 14-44 (67)
170 6rxn_A Rubredoxin; electron tr 39.5 11 0.00039 20.3 1.1 13 45-57 26-38 (46)
171 2dar_A PDZ and LIM domain prot 39.2 12 0.00041 22.6 1.3 26 50-75 26-51 (90)
172 1xwh_A Autoimmune regulator; P 38.4 6 0.0002 22.9 -0.2 49 47-104 6-56 (66)
173 1wig_A KIAA1808 protein; LIM d 38.3 22 0.00076 20.5 2.4 31 49-79 31-63 (73)
174 2kdx_A HYPA, hydrogenase/ureas 38.2 21 0.00071 23.0 2.4 13 92-104 87-100 (119)
175 1wfe_A Riken cDNA 2310008M20 p 38.1 14 0.00048 22.7 1.5 27 48-74 24-53 (86)
176 1wyh_A SLIM 2, skeletal muscle 37.9 24 0.00083 19.9 2.5 30 50-79 34-64 (72)
177 1erd_A Pheromone ER-2; NMR {Eu 37.1 8.4 0.00029 19.3 0.3 15 65-79 10-24 (40)
178 1e8j_A Rubredoxin; iron-sulfur 36.0 15 0.00051 20.3 1.3 14 44-57 31-44 (52)
179 3o70_A PHD finger protein 13; 35.3 13 0.00045 21.6 1.0 47 47-102 17-66 (68)
180 4rxn_A Rubredoxin; electron tr 35.0 15 0.0005 20.6 1.1 14 44-57 31-44 (54)
181 2cor_A Pinch protein; LIM doma 34.9 21 0.0007 21.0 1.9 28 50-77 42-69 (79)
182 2d8z_A Four and A half LIM dom 34.8 25 0.00084 19.8 2.2 32 49-80 31-63 (70)
183 1wev_A Riken cDNA 1110020M19; 34.8 8.3 0.00028 23.7 0.0 54 48-104 15-73 (88)
184 2dj7_A Actin-binding LIM prote 34.2 26 0.00089 20.6 2.3 32 49-80 42-73 (80)
185 1x6a_A LIMK-2, LIM domain kina 34.1 41 0.0014 19.5 3.2 33 48-80 40-75 (81)
186 2kpi_A Uncharacterized protein 33.9 22 0.00076 19.9 1.8 15 45-59 6-20 (56)
187 3d00_A Tungsten formylmethanof 33.6 8.9 0.0003 27.2 0.0 25 47-76 161-185 (191)
188 1nyp_A Pinch protein; LIM doma 33.2 17 0.00058 20.3 1.2 29 50-78 32-61 (66)
189 2ffw_A Midline-1; B-BOX, ring 33.1 28 0.00096 20.6 2.3 31 48-78 29-62 (78)
190 1yk4_A Rubredoxin, RD; electro 32.3 17 0.00059 20.0 1.1 14 44-57 30-43 (52)
191 2uzg_A Ubiquitin carboxyl-term 32.1 22 0.00076 22.2 1.7 26 49-74 25-53 (97)
192 2d8y_A Eplin protein; LIM doma 32.1 52 0.0018 19.6 3.5 32 49-80 42-74 (91)
193 1v6g_A Actin binding LIM prote 31.9 24 0.00082 20.6 1.8 10 51-60 17-26 (81)
194 1x3h_A Leupaxin; paxillin fami 31.8 53 0.0018 18.9 3.4 33 48-80 40-73 (80)
195 2v3b_B Rubredoxin 2, rubredoxi 31.6 18 0.0006 20.2 1.1 14 44-57 31-44 (55)
196 1x4l_A Skeletal muscle LIM-pro 30.2 27 0.00091 19.8 1.8 31 49-79 35-66 (72)
197 2jr6_A UPF0434 protein NMA0874 29.8 27 0.00091 20.4 1.7 15 45-59 4-18 (68)
198 2l3k_A Rhombotin-2, linker, LI 29.4 43 0.0015 21.3 2.9 35 48-82 35-71 (123)
199 1x63_A Skeletal muscle LIM-pro 29.4 38 0.0013 19.7 2.4 30 50-79 44-74 (82)
200 2eps_A POZ-, at HOOK-, and zin 29.3 64 0.0022 16.6 3.8 43 47-105 10-52 (54)
201 1x68_A FHL5 protein; four-and- 29.3 27 0.00093 20.1 1.7 28 49-76 35-63 (76)
202 2kn9_A Rubredoxin; metalloprot 29.1 21 0.00073 21.7 1.2 14 44-57 55-68 (81)
203 2a20_A Regulating synaptic mem 29.0 27 0.00091 20.0 1.5 12 47-58 7-18 (62)
204 2das_A Zinc finger MYM-type pr 28.9 48 0.0016 18.9 2.6 32 48-79 19-55 (62)
205 1dx8_A Rubredoxin; electron tr 28.8 21 0.00071 21.0 1.1 14 44-57 35-48 (70)
206 2cu8_A Cysteine-rich protein 2 28.6 24 0.00082 20.3 1.4 30 50-79 37-68 (76)
207 1x4k_A Skeletal muscle LIM-pro 28.2 36 0.0012 19.1 2.2 30 50-79 34-64 (72)
208 1g47_A Pinch protein; LIM doma 28.0 31 0.001 19.8 1.8 32 49-80 39-71 (77)
209 2cuq_A Four and A half LIM dom 27.5 58 0.002 18.7 3.0 33 48-80 40-73 (80)
210 2lcq_A Putative toxin VAPC6; P 26.8 29 0.001 23.5 1.8 12 95-106 149-160 (165)
211 1wys_A Riken cDNA 2310008M20 p 26.8 34 0.0012 20.4 1.8 25 49-73 14-41 (75)
212 2dlo_A Thyroid receptor-intera 26.2 25 0.00085 20.5 1.2 31 49-79 41-73 (81)
213 2csz_A Synaptotagmin-like prot 25.8 42 0.0014 20.1 2.0 30 47-76 23-57 (76)
214 2cr8_A MDM4 protein; ZF-ranbp 25.2 27 0.00092 19.3 1.0 27 44-76 6-32 (53)
215 2vrw_B P95VAV, VAV1, proto-onc 24.2 39 0.0013 26.2 2.3 32 46-77 354-390 (406)
216 1s24_A Rubredoxin 2; electron 24.0 29 0.001 21.4 1.2 14 44-57 63-76 (87)
217 2j9u_B VPS36, vacuolar protein 23.6 31 0.0011 20.7 1.1 12 45-56 13-24 (76)
218 4ayb_P DNA-directed RNA polyme 23.2 20 0.00068 19.5 0.2 15 92-106 21-35 (48)
219 2kwj_A Zinc finger protein DPF 23.0 7.1 0.00024 25.2 -1.9 46 51-103 60-108 (114)
220 1ard_A Yeast transcription fac 22.8 35 0.0012 14.3 1.1 12 50-61 3-14 (29)
221 2k5c_A Uncharacterized protein 22.8 17 0.0006 22.2 -0.0 13 93-105 7-19 (95)
222 1klr_A Zinc finger Y-chromosom 22.7 41 0.0014 14.2 1.4 13 50-62 3-15 (30)
223 2e72_A POGO transposable eleme 22.7 52 0.0018 17.9 1.9 14 92-105 10-23 (49)
224 2m0e_A Zinc finger and BTB dom 22.1 25 0.00085 14.8 0.5 13 50-62 3-15 (29)
225 1p7a_A BF3, BKLF, kruppel-like 21.0 51 0.0018 15.0 1.6 14 92-105 9-22 (37)
226 2lvu_A Zinc finger and BTB dom 26.5 20 0.0007 15.0 0.0 13 50-62 3-15 (26)
227 1a7i_A QCRP2 (LIM1); LIM domai 20.8 29 0.001 20.2 0.7 33 48-80 33-66 (81)
228 3f6q_B LIM and senescent cell 20.8 44 0.0015 18.6 1.5 32 48-79 38-70 (72)
229 1znf_A 31ST zinc finger from X 20.7 35 0.0012 14.1 0.8 12 50-61 2-13 (27)
230 1wep_A PHF8; structural genomi 20.4 66 0.0023 18.9 2.3 51 47-104 10-64 (79)
No 1
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.73 E-value=1.9e-18 Score=108.77 Aligned_cols=70 Identities=19% Similarity=0.299 Sum_probs=58.2
Q ss_pred CCCCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCccchhhHHHHHHHHHH
Q 041693 45 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGAIHLTELGILLSRSCR 124 (156)
Q Consensus 45 ~~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~ 124 (156)
.+.+++.||||+++|.+|++++|||+||+.||.+|+. .+...||.||..+...... .|..+.++++
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~----------~~~~~CP~C~~~~~~~~l~----~n~~l~~~i~ 69 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLD----------AGHKTCPKSQETLLHAGLT----PNYVLKSLIA 69 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHT----------TTCCBCTTTCCBCSSCCCE----ECTTTHHHHH
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHH----------HCcCCCCCCcCCCChhhCc----cCHHHHHHHH
Confidence 4578899999999999999999999999999999981 3367899999998765543 5667777777
Q ss_pred HHHH
Q 041693 125 EYWE 128 (156)
Q Consensus 125 ~~~~ 128 (156)
.|..
T Consensus 70 ~~~~ 73 (78)
T 1t1h_A 70 LWCE 73 (78)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 2
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.72 E-value=4.1e-18 Score=109.18 Aligned_cols=71 Identities=14% Similarity=0.080 Sum_probs=60.1
Q ss_pred CCCCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCccchhhHHHHHHHHHH
Q 041693 45 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGAIHLTELGILLSRSCR 124 (156)
Q Consensus 45 ~~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~ 124 (156)
.+.+++.||||+++|.+||+++|||+||+.||..|+ .....||.|+.++...... .|..++++++
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l-----------~~~~~cP~~~~~l~~~~l~----pn~~L~~~i~ 74 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHL-----------LNSPTDPFNRQMLTESMLE----PVPELKEQIQ 74 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHH-----------HHCSBCTTTCCBCCGGGCE----ECHHHHHHHH
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHH-----------hcCCCCCCCcCCCChHhcc----hHHHHHHHHH
Confidence 456789999999999999999999999999999998 2246899999998765543 6788899998
Q ss_pred HHHHHH
Q 041693 125 EYWEKR 130 (156)
Q Consensus 125 ~~~~~~ 130 (156)
.|...+
T Consensus 75 ~~~~~~ 80 (85)
T 2kr4_A 75 AWMREK 80 (85)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 886544
No 3
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.72 E-value=9.4e-18 Score=108.75 Aligned_cols=76 Identities=22% Similarity=0.501 Sum_probs=60.1
Q ss_pred ccCCCCcccCccccccCCCCeecc-CCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCccchhhHHHHHHH
Q 041693 43 SIRLDIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGAIHLTELGILLSR 121 (156)
Q Consensus 43 ~~~~~~~l~C~IC~~~~~~Pv~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~ 121 (156)
...+.+++.|+||+++|.+|++++ |||+||..||..|+.. .....||.||..+...... ..|..+.+
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~~~CP~Cr~~~~~~~~~---~~n~~l~~ 74 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE---------SDEHTCPTCHQNDVSPDAL---IANKFLRQ 74 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHH---------CTTCCCTTTCCSSCCTTSC---EECHHHHH
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHh---------cCCCcCcCCCCcCCCcccc---CcCHHHHH
Confidence 345678899999999999999999 9999999999999821 2347899999997432221 36888888
Q ss_pred HHHHHHHHH
Q 041693 122 SCREYWEKR 130 (156)
Q Consensus 122 l~~~~~~~~ 130 (156)
+++.+....
T Consensus 75 ~i~~~~~~~ 83 (92)
T 3ztg_A 75 AVNNFKNET 83 (92)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888886543
No 4
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.70 E-value=1.1e-17 Score=110.22 Aligned_cols=70 Identities=16% Similarity=0.079 Sum_probs=60.2
Q ss_pred CCCCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCccchhhHHHHHHHHHH
Q 041693 45 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGAIHLTELGILLSRSCR 124 (156)
Q Consensus 45 ~~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~ 124 (156)
.+.+++.||||+++|.+||+++|||+||+.||..|+ .....||.|+.++...+.. .|..++++++
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l-----------~~~~~cP~~~~~l~~~~L~----pn~~Lk~~I~ 89 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL-----------LNSPTDPFNRQTLTESMLE----PVPELKEQIQ 89 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHT-----------TSCSBCSSSCCBCCTTSSE----ECHHHHHHHH
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHH-----------HcCCCCCCCCCCCChhhce----ECHHHHHHHH
Confidence 456789999999999999999999999999999998 3457899999998766553 6788888888
Q ss_pred HHHHH
Q 041693 125 EYWEK 129 (156)
Q Consensus 125 ~~~~~ 129 (156)
.|...
T Consensus 90 ~~~~~ 94 (100)
T 2kre_A 90 AWMRE 94 (100)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 88654
No 5
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.69 E-value=2.8e-17 Score=108.00 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=60.7
Q ss_pred cCCCCcccCccccccCCCCeeccCC-CcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCccchhhHHHHHHHH
Q 041693 44 IRLDIELTCPVCLETVFDPVSLTCG-HILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGAIHLTELGILLSRS 122 (156)
Q Consensus 44 ~~~~~~l~C~IC~~~~~~Pv~l~Cg-H~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l 122 (156)
..+.+++.||||+++|.+||+++|| |+||+.||.+|+ .....||.||.++...+.. .|..|+++
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l-----------~~~~~cP~~~~~l~~~~L~----pn~~Lk~~ 81 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHL-----------LSDQTDPFNRSPLTMDQIR----PNTELKEK 81 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHT-----------TTSCBCTTTCSBCCTTTSE----ECHHHHHH
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHH-----------HhCCCCCCCCCCCChhhce----EcHHHHHH
Confidence 3457789999999999999999999 999999999998 3356899999999766553 67888888
Q ss_pred HHHHHHHH
Q 041693 123 CREYWEKR 130 (156)
Q Consensus 123 ~~~~~~~~ 130 (156)
++.+...+
T Consensus 82 I~~~~~~~ 89 (98)
T 1wgm_A 82 IQRWLAER 89 (98)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHc
Confidence 88886543
No 6
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.67 E-value=2.2e-17 Score=108.45 Aligned_cols=72 Identities=19% Similarity=0.369 Sum_probs=59.9
Q ss_pred CCCCcccCccccccCCCCeec-cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCccchhhHHHHHHHHH
Q 041693 45 RLDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGAIHLTELGILLSRSC 123 (156)
Q Consensus 45 ~~~~~l~C~IC~~~~~~Pv~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~ 123 (156)
.+.+.+.|+||++.+.+|+++ +|||+||..||.+|+ .....||.||..+...+. ..|..+.+++
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~l----~~n~~l~~~i 82 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFL-----------SYKTQCPTCCVTVTEPDL----KNNRILDELV 82 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHH-----------TTCCBCTTTCCBCCGGGC----EECHHHHHHH
T ss_pred hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHH-----------HCCCCCCCCCCcCChhhC----CcCHHHHHHH
Confidence 345689999999999999998 899999999999998 445789999999876444 3688888888
Q ss_pred HHHHHHHH
Q 041693 124 REYWEKRL 131 (156)
Q Consensus 124 ~~~~~~~~ 131 (156)
+.+...+.
T Consensus 83 ~~~~~~~~ 90 (99)
T 2y43_A 83 KSLNFARN 90 (99)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88866554
No 7
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.67 E-value=4.2e-17 Score=108.76 Aligned_cols=74 Identities=19% Similarity=0.382 Sum_probs=59.0
Q ss_pred CCCCcccCccccccCCCCeec-cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCccchhhHHHHHHHHH
Q 041693 45 RLDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGAIHLTELGILLSRSC 123 (156)
Q Consensus 45 ~~~~~l~C~IC~~~~~~Pv~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~ 123 (156)
.+.+++.|+||++.+.+|+++ +|||+||..||..|+ .....||.||..+...........|..+.+++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i 79 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL-----------ETSKYCPICDVQVHKTRPLLNIRSDKTLQDIV 79 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHH-----------TSCSBCTTTCCBSCSSCGGGGEEECHHHHHHH
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHH-----------HhCCcCcCCCccccccCcccccCcCHHHHHHH
Confidence 456789999999999999998 999999999999998 44588999999987643222224677888888
Q ss_pred HHHHHH
Q 041693 124 REYWEK 129 (156)
Q Consensus 124 ~~~~~~ 129 (156)
+.+...
T Consensus 80 ~~~~~~ 85 (108)
T 2ckl_A 80 YKLVPG 85 (108)
T ss_dssp HHHSTT
T ss_pred HHHhhh
Confidence 777553
No 8
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.66 E-value=4.3e-17 Score=113.30 Aligned_cols=68 Identities=26% Similarity=0.561 Sum_probs=52.6
Q ss_pred CCCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCccchhhHHHHHHHHHHH
Q 041693 46 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGAIHLTELGILLSRSCRE 125 (156)
Q Consensus 46 ~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~ 125 (156)
+.+++.|+||++.+.+|++++|||+||..||..|+ .....||.||.++..... . ..++..+..++..
T Consensus 50 ~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~~-~-~~~~~~i~~~~~~ 116 (138)
T 4ayc_A 50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWM-----------KRKIECPICRKDIKSKTY-S-LVLDNCINKMVNN 116 (138)
T ss_dssp HHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHT-----------TTCSBCTTTCCBCCCEEE-C-HHHHHHHHHHHTT
T ss_pred ccccCCCcccCcccCCceECCCCCCccHHHHHHHH-----------HcCCcCCCCCCcCCCCCC-c-cchhHHHHHHHHH
Confidence 34678999999999999999999999999999998 456789999999854322 1 1355555555554
Q ss_pred H
Q 041693 126 Y 126 (156)
Q Consensus 126 ~ 126 (156)
+
T Consensus 117 l 117 (138)
T 4ayc_A 117 L 117 (138)
T ss_dssp S
T ss_pred h
Confidence 4
No 9
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.65 E-value=5.4e-17 Score=109.79 Aligned_cols=71 Identities=27% Similarity=0.534 Sum_probs=58.1
Q ss_pred ccCCCCcccCccccccCCCCeec-cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCccchhhHHHHHHH
Q 041693 43 SIRLDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGAIHLTELGILLSR 121 (156)
Q Consensus 43 ~~~~~~~l~C~IC~~~~~~Pv~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~ 121 (156)
...+.+.+.|+||++++.+|+++ +|||+||..||..|+ . ..||.||..+..... ..|..+.+
T Consensus 16 ~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~-----------~--~~CP~Cr~~~~~~~~----~~n~~l~~ 78 (117)
T 1jm7_B 16 LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCI-----------G--TGCPVCYTPAWIQDL----KINRQLDS 78 (117)
T ss_dssp HHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGT-----------T--TBCSSSCCBCSCSSC----CCCHHHHH
T ss_pred HHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHh-----------c--CCCcCCCCcCccccc----cccHHHHH
Confidence 34456789999999999999999 999999999999986 2 689999999865544 36777888
Q ss_pred HHHHHHHHH
Q 041693 122 SCREYWEKR 130 (156)
Q Consensus 122 l~~~~~~~~ 130 (156)
++..+...+
T Consensus 79 l~~~~~~~~ 87 (117)
T 1jm7_B 79 MIQLCSKLR 87 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888775544
No 10
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.65 E-value=5.5e-17 Score=110.74 Aligned_cols=71 Identities=24% Similarity=0.501 Sum_probs=57.2
Q ss_pred CCCCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCccchhhHHHHHHHHHH
Q 041693 45 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGAIHLTELGILLSRSCR 124 (156)
Q Consensus 45 ~~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~ 124 (156)
.+.+++.|+||++.+.+|++++|||+||..||..|+. .....||.||..+...... ..|..+.++++
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~~---~~n~~l~~~i~ 114 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFR----------AQVFSCPACRYDLGRSYAM---QVNQPLQTVLN 114 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHH----------TTCCBCTTTCCBCCTTCCC---CCCHHHHHHHH
T ss_pred hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHh----------HCcCCCCCCCccCCCCCCC---CCCHHHHHHHH
Confidence 3456799999999999999999999999999999982 3456899999998762222 36778888887
Q ss_pred HHHH
Q 041693 125 EYWE 128 (156)
Q Consensus 125 ~~~~ 128 (156)
.++.
T Consensus 115 ~~~p 118 (124)
T 3fl2_A 115 QLFP 118 (124)
T ss_dssp HHST
T ss_pred HHcc
Confidence 7654
No 11
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.64 E-value=4.5e-17 Score=109.74 Aligned_cols=78 Identities=24% Similarity=0.496 Sum_probs=57.5
Q ss_pred CCCCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCC---ccchhhHHHHHHH
Q 041693 45 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQG---AIHLTELGILLSR 121 (156)
Q Consensus 45 ~~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~---~~~~~~~n~~l~~ 121 (156)
.+.+++.|+||++.+.+|++++|||+||..||.+|+ ......||.||..+.... ......+|..+..
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~----------~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~ 80 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTV----------EKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWT 80 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCC----------CTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHH
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHH----------hHCcCCCCCCCcccCccccccccccchhhHHHHH
Confidence 445689999999999999999999999999998886 133578999999986410 0000125677777
Q ss_pred HHHHHHHHHHh
Q 041693 122 SCREYWEKRLQ 132 (156)
Q Consensus 122 l~~~~~~~~~~ 132 (156)
++..++.....
T Consensus 81 ~i~~~~p~~~~ 91 (115)
T 3l11_A 81 IIQKHYPRECK 91 (115)
T ss_dssp HHHHHSHHHHH
T ss_pred HHHHHCCHHHH
Confidence 77777655433
No 12
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.62 E-value=3.6e-17 Score=107.76 Aligned_cols=58 Identities=19% Similarity=0.466 Sum_probs=48.7
Q ss_pred ccCCCCcccCccccccCCCCee-ccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCcc
Q 041693 43 SIRLDIELTCPVCLETVFDPVS-LTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGAI 110 (156)
Q Consensus 43 ~~~~~~~l~C~IC~~~~~~Pv~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 110 (156)
...+.+++.|+||++.+.+|++ ++|||+||..||.+|+. .....||.||.++...+..
T Consensus 16 ~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~l~ 74 (100)
T 3lrq_A 16 VESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLT----------EQRAQCPHCRAPLQLRELV 74 (100)
T ss_dssp HHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHH----------HTCSBCTTTCCBCCGGGCE
T ss_pred cccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHH----------HCcCCCCCCCCcCCHHHhH
Confidence 3456788999999999999999 89999999999999982 1126899999998765554
No 13
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=3.3e-16 Score=102.07 Aligned_cols=75 Identities=21% Similarity=0.304 Sum_probs=58.1
Q ss_pred CCCcccCccccccCCCCeecc-CCCcccHhhHHHHHhhhhhccccCCCCCCCCCC--CCcC-cccCCccchhhHHHHHHH
Q 041693 46 LDIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPTEKCPL--CRKA-GVYQGAIHLTELGILLSR 121 (156)
Q Consensus 46 ~~~~l~C~IC~~~~~~Pv~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~--Cr~~-~~~~~~~~~~~~n~~l~~ 121 (156)
..+++.||||+++|.+||+++ |||+||+.||..|+..+ ........||+ |+.. +...++. .|..|.+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~-----~~~~~~~~CP~tgc~~~~l~~~~L~----pn~~L~~ 74 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESR-----QKRKKKAYCPQIGCSHTDIRKSDLI----QDEALRR 74 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHH-----HTTTCCBCCCSTTCCCCCBCGGGEE----ECHHHHH
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHc-----cCcCCCCCCCcCcCcccccCHhhCc----CCHHHHH
Confidence 357899999999999999996 99999999999998321 11234678999 9876 6555443 6788888
Q ss_pred HHHHHHHH
Q 041693 122 SCREYWEK 129 (156)
Q Consensus 122 l~~~~~~~ 129 (156)
+++.+...
T Consensus 75 ~I~~~~~~ 82 (94)
T 2yu4_A 75 AIENHNKK 82 (94)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 88887543
No 14
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=6.3e-16 Score=95.78 Aligned_cols=57 Identities=32% Similarity=0.753 Sum_probs=47.8
Q ss_pred cCCCCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCC
Q 041693 44 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQG 108 (156)
Q Consensus 44 ~~~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 108 (156)
..+.+.+.|+||++.+.+|+.++|||+||..||..|+ ........||.||..+...+
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~--------~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIG--------ETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHC--------SSSCSCCCCSSSCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHH--------HcCCCCCCCCCCCCcCCccc
Confidence 4567789999999999999999999999999999997 11235678999999986543
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=4e-16 Score=96.69 Aligned_cols=57 Identities=21% Similarity=0.508 Sum_probs=48.6
Q ss_pred ccCCCCcccCccccccCCCCeec-cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCcc
Q 041693 43 SIRLDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGAI 110 (156)
Q Consensus 43 ~~~~~~~l~C~IC~~~~~~Pv~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 110 (156)
...+.+.+.|+||++.+.+|+++ +|||+||..||.+|+ .....||+||..+...+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHF-----------YYSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHH-----------HHCSSCTTTCCCCCSSCSC
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHH-----------HcCCcCCCcCcccCccccc
Confidence 34567889999999999999997 999999999999998 3357899999998765543
No 16
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=8.4e-16 Score=93.60 Aligned_cols=55 Identities=22% Similarity=0.579 Sum_probs=47.2
Q ss_pred cCCCCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCC
Q 041693 44 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQG 108 (156)
Q Consensus 44 ~~~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 108 (156)
..+.+.+.|+||++.+.+|+.++|||+||..||.+|+ ......||.||..+...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~----------~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALL----------SSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHH----------TTSSCCCTTTCCCCCTTT
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHH----------HhCcCCCCCCCcCCChhh
Confidence 3456789999999999999999999999999999998 134678999999986543
No 17
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.59 E-value=5.1e-16 Score=109.37 Aligned_cols=70 Identities=24% Similarity=0.470 Sum_probs=56.9
Q ss_pred CCCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCccchhhHHHHHHHHHHH
Q 041693 46 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGAIHLTELGILLSRSCRE 125 (156)
Q Consensus 46 ~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~~ 125 (156)
+.+.+.|+||++.+.+|++++|||+||..||..|+. .....||+||..+...... ..|..+.++++.
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~l---~~n~~l~~lv~~ 141 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFK----------AQVFSCPACRHDLGQNYIM---IPNEILQTLLDL 141 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHH----------TTCCBCTTTCCBCCTTCCC---CBCHHHHHHHHH
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHH----------hCCCcCCCCCccCCCCCCC---CCCHHHHHHHHH
Confidence 456799999999999999999999999999999982 3456899999998765221 367788888877
Q ss_pred HHH
Q 041693 126 YWE 128 (156)
Q Consensus 126 ~~~ 128 (156)
++.
T Consensus 142 ~~p 144 (150)
T 1z6u_A 142 FFP 144 (150)
T ss_dssp HST
T ss_pred Hhh
Confidence 653
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.59 E-value=5.6e-16 Score=96.57 Aligned_cols=56 Identities=27% Similarity=0.603 Sum_probs=46.7
Q ss_pred ccCCCCcccCccccccCCCCeecc-CCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccC
Q 041693 43 SIRLDIELTCPVCLETVFDPVSLT-CGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQ 107 (156)
Q Consensus 43 ~~~~~~~l~C~IC~~~~~~Pv~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 107 (156)
...+.+++.|+||++.+.+|++++ |||+||..||.+|+.. .....||+||..+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE---------SDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHH---------SSSSCCSSSCCSSCCT
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHh---------cCCCcCCCCCCcCCCc
Confidence 345678899999999999999999 9999999999999821 2347899999986543
No 19
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.59 E-value=6.9e-16 Score=103.17 Aligned_cols=58 Identities=33% Similarity=0.766 Sum_probs=47.6
Q ss_pred CCCCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCcc
Q 041693 45 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGAI 110 (156)
Q Consensus 45 ~~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 110 (156)
.+.+.+.|+||++.+.+|++++|||+||..||..|+.. ..+...||.||..+......
T Consensus 17 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--------~~~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQ--------KKGPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp HHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHS--------SSSSCCCTTTSCCCCTTTCB
T ss_pred hccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHh--------CCCCCCCcCCCCcCCHhhcC
Confidence 34567899999999999999999999999999999821 12347899999998765543
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.5e-15 Score=95.04 Aligned_cols=50 Identities=26% Similarity=0.664 Sum_probs=44.6
Q ss_pred CCCCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcc
Q 041693 45 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGV 105 (156)
Q Consensus 45 ~~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 105 (156)
...+.+.|+||++.+.+|++++|||+||..||.+|+ .....||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~-----------~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHF-----------RATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHH-----------HHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHH-----------HCCCcCCCcCcccc
Confidence 446789999999999999999999999999999998 33568999999986
No 21
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.56 E-value=1.3e-15 Score=116.26 Aligned_cols=70 Identities=10% Similarity=0.052 Sum_probs=57.8
Q ss_pred CCCCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCccchhhHHHHHHHHHH
Q 041693 45 RLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGAIHLTELGILLSRSCR 124 (156)
Q Consensus 45 ~~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l~~ 124 (156)
.+.+.+.||||+++|.+||+++|||+||+.||.+|+. .+...||+||.++...+.. .|..+.++++
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~----------~~~~~cP~~~~~~~~~~l~----~n~~l~~~i~ 269 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQ----------RVGHFNPVTRSPLTQEQLI----PNLAMKEVID 269 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHH----------HTCSSCTTTCCCCCGGGCE----ECHHHHHHHH
T ss_pred CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHH----------HCCCCCcCCCCCCchhcCc----ccHHHHHHHH
Confidence 4457899999999999999999999999999999982 1233499999999765543 6888888888
Q ss_pred HHHH
Q 041693 125 EYWE 128 (156)
Q Consensus 125 ~~~~ 128 (156)
.|..
T Consensus 270 ~~~~ 273 (281)
T 2c2l_A 270 AFIS 273 (281)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8764
No 22
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.56 E-value=1.7e-15 Score=109.26 Aligned_cols=73 Identities=10% Similarity=0.045 Sum_probs=59.8
Q ss_pred ccCCCCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCccchhhHHHHHHHH
Q 041693 43 SIRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGAIHLTELGILLSRS 122 (156)
Q Consensus 43 ~~~~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l 122 (156)
...+.+.+.||||+++|.+||+++|||+||+.||..|+. ..+..||.|+.++...+.. .|..+.++
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~----------~~~~tcP~t~~~l~~~~L~----pN~~Lk~~ 165 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQ----------RVGHFDPVTRSPLTQDQLI----PNLAMKEV 165 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH----------HTCSBCTTTCCBCCGGGCE----ECHHHHHH
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHH----------hCCCCCCCCcCCCChhhCc----chHHHHHH
Confidence 345678999999999999999999999999999999982 1123699999998765553 67888888
Q ss_pred HHHHHHH
Q 041693 123 CREYWEK 129 (156)
Q Consensus 123 ~~~~~~~ 129 (156)
+..+...
T Consensus 166 Ie~~~~~ 172 (179)
T 2f42_A 166 IDAFIQE 172 (179)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888643
No 23
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.56 E-value=8.7e-16 Score=96.51 Aligned_cols=61 Identities=31% Similarity=0.762 Sum_probs=48.2
Q ss_pred cCCCCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCC
Q 041693 44 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQG 108 (156)
Q Consensus 44 ~~~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 108 (156)
..+.+++.|+||++.+.+|++++|||+||..||.+|+..+ .........||.||..+...+
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~----~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEA----VTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCC----SSSCCCCCCCSSSCCCCCSSG
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhc----ccCCCCCCcCCCCCCcCCHhh
Confidence 4567889999999999999999999999999999887210 111134688999999986543
No 24
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=4.6e-15 Score=94.16 Aligned_cols=61 Identities=31% Similarity=0.718 Sum_probs=49.4
Q ss_pred cCCCCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCc
Q 041693 44 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGA 109 (156)
Q Consensus 44 ~~~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 109 (156)
..+.+.+.|+||++.+.+|+.++|||+||..|+..|+... ........||.||..+.....
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-----~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESN-----RNTDGKGNCPVCRVPYPFGNL 74 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHS-----BCTTSCBCCTTTCCCCCTTCC
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhc-----cCCCCCCCCCCCCCcCCHHhC
Confidence 4567789999999999999999999999999999998321 112347889999999876544
No 25
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=3.1e-15 Score=90.20 Aligned_cols=49 Identities=37% Similarity=0.893 Sum_probs=42.0
Q ss_pred cCCCCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCC
Q 041693 44 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLC 100 (156)
Q Consensus 44 ~~~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~C 100 (156)
..+.+++.|+||++.+.+|++++|||+||..||.+|+.. ......||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--------~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGET--------SCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHH--------CSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHc--------CCCCCcCcCC
Confidence 456788999999999999999999999999999999821 1346789998
No 26
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.54 E-value=9.9e-16 Score=109.31 Aligned_cols=73 Identities=25% Similarity=0.538 Sum_probs=56.1
Q ss_pred cCCCCcccCccccccCCCCeec-cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCccchhhHHHHHHHH
Q 041693 44 IRLDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGAIHLTELGILLSRS 122 (156)
Q Consensus 44 ~~~~~~l~C~IC~~~~~~Pv~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l 122 (156)
..+.+.+.|+||++.+.+|+++ +|||+||..||..|+. .....||.||..+...... ..|..+.++
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~l---~~~~~l~~~ 115 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALR----------SGNKECPTCRKKLVSKRSL---RPDPNFDAL 115 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH----------TTCCBCTTTCCBCCSGGGE---EECHHHHHH
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHH----------hCcCCCCCCCCcCCCcccC---CcCHHHHHH
Confidence 3456678999999999999998 9999999999999982 2367899999998543322 357777888
Q ss_pred HHHHHHH
Q 041693 123 CREYWEK 129 (156)
Q Consensus 123 ~~~~~~~ 129 (156)
+..++..
T Consensus 116 i~~~~~~ 122 (165)
T 2ckl_B 116 ISKIYPS 122 (165)
T ss_dssp HHHHC--
T ss_pred HHHHHcc
Confidence 7777554
No 27
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.4e-15 Score=92.17 Aligned_cols=50 Identities=34% Similarity=0.717 Sum_probs=44.2
Q ss_pred CCCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCccc
Q 041693 46 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVY 106 (156)
Q Consensus 46 ~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 106 (156)
..+.+.|+||++.+.+|+.++|||+||..||.+|+ .....||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~-----------~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGAS-----------WLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCT-----------TCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHH-----------HCCCcCcCcCchhCH
Confidence 35678999999999999999999999999999997 445789999998753
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=7e-15 Score=93.31 Aligned_cols=61 Identities=34% Similarity=0.809 Sum_probs=49.2
Q ss_pred cCCCCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCc
Q 041693 44 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGA 109 (156)
Q Consensus 44 ~~~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 109 (156)
..+.+.+.|+||++.+.+|+.++|||+||..|+..|+..+. .......||.||..+...+.
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-----~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSM-----LDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHH-----HTTSCCCCTTTCCSSCSSSC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhh-----cCCCCCcCCCCCCccCHHhc
Confidence 35677899999999999999999999999999999983211 12346899999999876544
No 29
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.52 E-value=1.2e-15 Score=106.50 Aligned_cols=53 Identities=28% Similarity=0.773 Sum_probs=45.7
Q ss_pred cCCCCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCccc
Q 041693 44 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVY 106 (156)
Q Consensus 44 ~~~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 106 (156)
..+.+.+.|+||++++.+|++++|||+||..||.+|+. .....||.||.++..
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~----------~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILS----------SGPQNCAACVHEGIY 78 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGG----------GSCEECHHHHHTTCC
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHh----------cCCCCCCCCCCcccc
Confidence 46788999999999999999999999999999999981 234689999997643
No 30
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=8.1e-15 Score=93.79 Aligned_cols=59 Identities=29% Similarity=0.662 Sum_probs=48.5
Q ss_pred ccCCCCcccCccccccCCC----CeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCc
Q 041693 43 SIRLDIELTCPVCLETVFD----PVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGA 109 (156)
Q Consensus 43 ~~~~~~~l~C~IC~~~~~~----Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 109 (156)
...+.+.+.|+||++.+.+ |+.++|||+||..|+.+|+.. ......||.||..+...+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~--------~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLAS--------SINGVRCPFCSKITRITSL 71 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHH--------CSSCBCCTTTCCCBCCSST
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHc--------CCCCcCCCCCCCcccchhH
Confidence 3456788999999999998 999999999999999999831 1235789999999866543
No 31
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.51 E-value=3e-15 Score=92.13 Aligned_cols=55 Identities=29% Similarity=0.689 Sum_probs=46.1
Q ss_pred CCCCcccCccccccCCCC-------eeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCcc
Q 041693 45 RLDIELTCPVCLETVFDP-------VSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGAI 110 (156)
Q Consensus 45 ~~~~~l~C~IC~~~~~~P-------v~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 110 (156)
...+++.|+||++.+.+| +.++|||+||..||.+|+ .....||.||..+...+..
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-----------KNANTCPTCRKKINHKRYH 67 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHH-----------HHCSBCTTTCCBCCCCSCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHH-----------HcCCCCCCCCCccChhhee
Confidence 345789999999999888 788999999999999998 2346899999998765543
No 32
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.50 E-value=4.9e-15 Score=100.23 Aligned_cols=56 Identities=29% Similarity=0.651 Sum_probs=47.3
Q ss_pred cCCCCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCc
Q 041693 44 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGA 109 (156)
Q Consensus 44 ~~~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 109 (156)
..+.+.+.|+||++.+.+|++++|||+||..||..|+. .....||.||..+.....
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~ 68 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIR----------DAGHKCPVDNEILLENQL 68 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH----------HHCSBCTTTCCBCCGGGC
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHh----------hCCCCCCCCCCCcCHHhc
Confidence 35678899999999999999999999999999999983 122389999999876544
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.49 E-value=1.2e-14 Score=88.17 Aligned_cols=52 Identities=25% Similarity=0.527 Sum_probs=43.5
Q ss_pred CcccCccccc-cCCCC----eeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCc
Q 041693 48 IELTCPVCLE-TVFDP----VSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGA 109 (156)
Q Consensus 48 ~~l~C~IC~~-~~~~P----v~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 109 (156)
+++.|+||++ .+.+| +.++|||+||..||.+|+. .....||.||..+...+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV----------RGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH----------TTSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH----------cCCCcCCCCCCccccccc
Confidence 4689999999 89888 4679999999999999971 335789999999876554
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.7e-14 Score=85.30 Aligned_cols=49 Identities=37% Similarity=0.815 Sum_probs=41.3
Q ss_pred cCCCCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCC
Q 041693 44 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLC 100 (156)
Q Consensus 44 ~~~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~C 100 (156)
..+.+.+.|+||++.+.+|+.++|||+||..||.+|+. .......||+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~--------~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWE--------DLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTT--------SSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHH--------hcCCCCCCCCC
Confidence 35567899999999999999999999999999999961 11356789988
No 35
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=9.2e-15 Score=89.33 Aligned_cols=50 Identities=32% Similarity=0.798 Sum_probs=43.3
Q ss_pred CCCCcccCccccccCCCC-------eeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcc
Q 041693 45 RLDIELTCPVCLETVFDP-------VSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGV 105 (156)
Q Consensus 45 ~~~~~l~C~IC~~~~~~P-------v~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 105 (156)
.+.+.+.|+||++.+.+| +.++|||+||..||.+|+ .....||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-----------KNANTCPTCRKKIN 67 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHH-----------HHCSSCTTTCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHH-----------HcCCCCCCCCCccC
Confidence 456789999999999887 788999999999999998 23568999999875
No 36
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.47 E-value=8.5e-15 Score=98.64 Aligned_cols=53 Identities=25% Similarity=0.637 Sum_probs=45.4
Q ss_pred CCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCc
Q 041693 47 DIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGA 109 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 109 (156)
.+++.|+||++.+.+|++++|||+||..||.+|+. .....||.||..+...+.
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLK----------VMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH----------HTCSBCTTTCCBCCGGGC
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHh----------HCcCcCCCCCCCCCHhhc
Confidence 45789999999999999999999999999999982 125689999999876543
No 37
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.46 E-value=3.4e-14 Score=83.78 Aligned_cols=47 Identities=28% Similarity=0.528 Sum_probs=40.9
Q ss_pred CCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccC
Q 041693 47 DIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQ 107 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 107 (156)
.+.+.|+||++.+.+|++++|||+||..|+.. ....||+||+.+...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~--------------~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA--------------SGMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS--------------SSSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc--------------CCCCCCcCCcEeecC
Confidence 56799999999999999999999999999842 356899999998654
No 38
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.46 E-value=4e-14 Score=106.96 Aligned_cols=71 Identities=20% Similarity=0.353 Sum_probs=57.6
Q ss_pred CCCCcccCccccccCCCCeec-cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCC--CCcCcccCCccchhhHHHHHHH
Q 041693 45 RLDIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPTEKCPL--CRKAGVYQGAIHLTELGILLSR 121 (156)
Q Consensus 45 ~~~~~l~C~IC~~~~~~Pv~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~--Cr~~~~~~~~~~~~~~n~~l~~ 121 (156)
....+++||||+++|.+||+. .|||+||+.||..|+. ..+...||+ |++.+...+.. .|..+.+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~---------~~~~~~CPvtGCr~~l~~~dL~----pN~~L~~ 243 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQ---------GYTTRDCPQAACSQVVSMRDFV----RDPIMEL 243 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHST---------TCSCEECSGGGCSCEECGGGEE----ECHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHH---------hCCCCCCCcccccCcCchhhCC----cCHHHHH
Confidence 456789999999999999985 9999999999999971 124578999 99988766553 6788888
Q ss_pred HHHHHHH
Q 041693 122 SCREYWE 128 (156)
Q Consensus 122 l~~~~~~ 128 (156)
+++.+..
T Consensus 244 lve~~k~ 250 (267)
T 3htk_C 244 RCKIAKM 250 (267)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877643
No 39
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.45 E-value=1.2e-14 Score=87.54 Aligned_cols=51 Identities=29% Similarity=0.750 Sum_probs=43.6
Q ss_pred CcccCccccccCCCC-------eeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCc
Q 041693 48 IELTCPVCLETVFDP-------VSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGA 109 (156)
Q Consensus 48 ~~l~C~IC~~~~~~P-------v~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 109 (156)
+++.|+||++.+.+| +.++|||+||..|+.+|+ .....||.||..+...+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-----------KNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHH-----------HHCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHH-----------HcCCCCCCCCccCCccce
Confidence 568999999999887 778999999999999998 235689999999876554
No 40
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.44 E-value=6.3e-14 Score=87.83 Aligned_cols=54 Identities=30% Similarity=0.624 Sum_probs=44.5
Q ss_pred CCCCcccCccccccCCCC---eeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCc
Q 041693 45 RLDIELTCPVCLETVFDP---VSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGA 109 (156)
Q Consensus 45 ~~~~~l~C~IC~~~~~~P---v~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 109 (156)
...+...|+||++.|..+ +.++|||.||..||.+|+ .....||+||..+.....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWL-----------EQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHH-----------TTTCSCTTTCCCCCCSCS
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHH-----------HcCCcCcCcCCccCCccc
Confidence 446788999999999766 446999999999999998 445789999999876544
No 41
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.44 E-value=1e-13 Score=81.14 Aligned_cols=49 Identities=35% Similarity=0.653 Sum_probs=41.9
Q ss_pred CCCcccCccccccCCC---Ceecc-CCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcc
Q 041693 46 LDIELTCPVCLETVFD---PVSLT-CGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGV 105 (156)
Q Consensus 46 ~~~~l~C~IC~~~~~~---Pv~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 105 (156)
++++..|+||++.+.+ ++.++ |||.||..||.+|+ .....||+||..+.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~-----------~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL-----------GSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTT-----------TTCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHH-----------HcCCcCcCCCCEeE
Confidence 4567899999999977 77787 99999999999997 44678999998763
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.43 E-value=1.2e-13 Score=86.91 Aligned_cols=54 Identities=28% Similarity=0.629 Sum_probs=42.8
Q ss_pred CCCCcccCccccccCC--CCeecc--CCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCC
Q 041693 45 RLDIELTCPVCLETVF--DPVSLT--CGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQG 108 (156)
Q Consensus 45 ~~~~~l~C~IC~~~~~--~Pv~l~--CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 108 (156)
.+.+++.||||++.+. ++..++ |||+||..|+.+++ ......||.||+++....
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~----------~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIR----------TDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHT----------TSSCSBCTTTCCBCSSCS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHH----------hcCCCCCCCCCCccCCCc
Confidence 4578899999999873 455555 99999999999886 134678999999986543
No 43
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=3.9e-14 Score=86.98 Aligned_cols=53 Identities=28% Similarity=0.631 Sum_probs=45.7
Q ss_pred cCCCCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCC
Q 041693 44 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQG 108 (156)
Q Consensus 44 ~~~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 108 (156)
..+.+.+.|+||++.+.+ +.++|||+||..|+.+|+ .....||.||..+...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWS-----------DRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSS-----------CCCSSCHHHHHCTTCCC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHH-----------HCcCcCCCcCCcccCCC
Confidence 345678999999999999 889999999999999997 45788999999986543
No 44
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.41 E-value=5.7e-14 Score=100.54 Aligned_cols=56 Identities=29% Similarity=0.651 Sum_probs=47.5
Q ss_pred cCCCCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCc
Q 041693 44 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGA 109 (156)
Q Consensus 44 ~~~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 109 (156)
..+.+.+.|+||++++.+|++++|||+||..||.+|+. .....||.||..+.....
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~~~~ 68 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIR----------DAGHKCPVDNEILLENQL 68 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHH----------HHCSBCTTTCCBCCGGGC
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHH----------hCCCCCCCCccCcchhhh
Confidence 35678899999999999999999999999999999982 123489999999876544
No 45
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.40 E-value=2.9e-13 Score=87.44 Aligned_cols=49 Identities=27% Similarity=0.626 Sum_probs=42.1
Q ss_pred CCCcccCccccccCCC---CeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcc
Q 041693 46 LDIELTCPVCLETVFD---PVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGV 105 (156)
Q Consensus 46 ~~~~l~C~IC~~~~~~---Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 105 (156)
..++..|+||++.+.. ++.++|||.||..||..|+ .....||+||..+.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl-----------~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWL-----------QKSGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHH-----------TTTCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHH-----------HcCCcCcCcCccCC
Confidence 3567899999999877 7778999999999999998 44568999999875
No 46
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=1.3e-13 Score=84.39 Aligned_cols=51 Identities=29% Similarity=0.577 Sum_probs=41.3
Q ss_pred CCCCcccCccccccCC---CCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCccc
Q 041693 45 RLDIELTCPVCLETVF---DPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVY 106 (156)
Q Consensus 45 ~~~~~l~C~IC~~~~~---~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 106 (156)
.......|+||++.+. .++.++|||.||..||.+|+ .....||+||..+..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWL-----------ITNKKCPICRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHH-----------HHCSBCTTTCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHH-----------HcCCCCcCcCccccC
Confidence 3456789999999884 45678999999999999998 224469999998864
No 47
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.39 E-value=1.1e-13 Score=84.37 Aligned_cols=48 Identities=29% Similarity=0.721 Sum_probs=41.2
Q ss_pred CCcccCccccccCCCC-eeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcc
Q 041693 47 DIELTCPVCLETVFDP-VSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGV 105 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~P-v~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 105 (156)
.++..|+||++.+.+| +.++|||+||..|+.+|+ .....||.||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWI-----------RQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHH-----------HHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHH-----------hCcCcCcCCChhhH
Confidence 3567999999999997 678999999999999998 33468999999875
No 48
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.39 E-value=1.4e-13 Score=80.43 Aligned_cols=47 Identities=32% Similarity=0.755 Sum_probs=39.7
Q ss_pred CcccCccccccCCC----CeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcc
Q 041693 48 IELTCPVCLETVFD----PVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGV 105 (156)
Q Consensus 48 ~~l~C~IC~~~~~~----Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 105 (156)
++..|+||++.+.+ ++.++|||.||..||.+|+ .....||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEML-----------KEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHH-----------HHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHH-----------HcCCcCCCCCCcCC
Confidence 46789999999865 6778999999999999998 22378999998763
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.36 E-value=2e-13 Score=93.32 Aligned_cols=52 Identities=29% Similarity=0.727 Sum_probs=45.3
Q ss_pred CCcccCccccccCCCC-------eeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCc
Q 041693 47 DIELTCPVCLETVFDP-------VSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGA 109 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~P-------v~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 109 (156)
.+++.|+||++.+.+| +.++|||+||..||.+|+ .....||.||+.+.....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-----------KNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHH-----------TTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHH-----------HhCCCCCCCCCcCccccc
Confidence 4679999999999998 889999999999999998 455699999999875544
No 50
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=2.3e-13 Score=84.69 Aligned_cols=49 Identities=22% Similarity=0.472 Sum_probs=41.6
Q ss_pred CCcccCccccccCCCC---eeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCccc
Q 041693 47 DIELTCPVCLETVFDP---VSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVY 106 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~P---v~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 106 (156)
.+...|+||++.+..+ +.++|||.||..||.+|+ .....||+||..+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~-----------~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWL-----------KANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHH-----------HHCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHH-----------HcCCcCcCcCCcCCC
Confidence 4678999999999877 668999999999999998 234589999998754
No 51
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=3.2e-13 Score=83.74 Aligned_cols=51 Identities=27% Similarity=0.585 Sum_probs=42.3
Q ss_pred CCCCcccCccccccCCCCeec---cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCccc
Q 041693 45 RLDIELTCPVCLETVFDPVSL---TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVY 106 (156)
Q Consensus 45 ~~~~~l~C~IC~~~~~~Pv~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 106 (156)
.+.++..|+||++.+..+..+ +|||.||..||.+|+ .....||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~-----------~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWL-----------EVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHH-----------HHCSBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHH-----------HcCCcCCCcCccccc
Confidence 456678999999999877654 999999999999998 223489999998854
No 52
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.27 E-value=2.6e-12 Score=86.00 Aligned_cols=54 Identities=20% Similarity=0.401 Sum_probs=41.8
Q ss_pred CCcccCccccccCCCCe------------------eccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCccc
Q 041693 47 DIELTCPVCLETVFDPV------------------SLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVY 106 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv------------------~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 106 (156)
..+..|+||++.|..|. .++|||.||..||..|+... .......||+||..+..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~------~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG------NKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHT------CCSSCCBCTTTCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcc------cCCCCCcCCCCCCccCC
Confidence 34569999999997765 67899999999999998211 01346789999998754
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.25 E-value=1e-12 Score=81.71 Aligned_cols=47 Identities=36% Similarity=0.893 Sum_probs=40.5
Q ss_pred CCCCcccCccccccCCCCeeccCCCc-ccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCccc
Q 041693 45 RLDIELTCPVCLETVFDPVSLTCGHI-LCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVY 106 (156)
Q Consensus 45 ~~~~~l~C~IC~~~~~~Pv~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 106 (156)
.+.+++.|+||++.+.+|+.++|||. ||..|+..| ..||.||..+..
T Consensus 20 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 20 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV---------------DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC---------------SBCTTTCCBCSE
T ss_pred cCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC---------------ccCCCcCcCccC
Confidence 34567899999999999999999999 999999433 689999998754
No 54
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=6.3e-13 Score=82.83 Aligned_cols=46 Identities=35% Similarity=0.878 Sum_probs=39.9
Q ss_pred CCCcccCccccccCCCCeeccCCCc-ccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCccc
Q 041693 46 LDIELTCPVCLETVFDPVSLTCGHI-LCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVY 106 (156)
Q Consensus 46 ~~~~l~C~IC~~~~~~Pv~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 106 (156)
+.+.+.|+||++.+.+|+.++|||. ||..|+.+ ...||.||.++..
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~---------------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA---------------VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH---------------CSBCTTTCCBCCC
T ss_pred CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC---------------CCCCccCCceecC
Confidence 3567899999999999999999999 99999943 2579999998864
No 55
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.21 E-value=5.5e-12 Score=81.77 Aligned_cols=53 Identities=25% Similarity=0.518 Sum_probs=41.6
Q ss_pred CcccCccccccCCCCeec---cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCC--CCcC
Q 041693 48 IELTCPVCLETVFDPVSL---TCGHILCKMCACSAASVSIVDGLKLADPTEKCPL--CRKA 103 (156)
Q Consensus 48 ~~l~C~IC~~~~~~Pv~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~--Cr~~ 103 (156)
+.++|+||++.+..|+++ +|||.||..|+.+++...+..+ ......||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g---~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEG---LETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHC---SCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcC---CcccccCccccCCCC
Confidence 468999999999988764 6999999999999985443211 123578999 9988
No 56
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.20 E-value=5.5e-12 Score=76.22 Aligned_cols=49 Identities=24% Similarity=0.557 Sum_probs=42.2
Q ss_pred CCCcccCccccccCCCCeec--cCCCc-ccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcc
Q 041693 46 LDIELTCPVCLETVFDPVSL--TCGHI-LCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGV 105 (156)
Q Consensus 46 ~~~~l~C~IC~~~~~~Pv~l--~CgH~-fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 105 (156)
..++..|+||++...+++.+ +|||. ||..|+.+|+ .....||+||+++.
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~-----------~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLK-----------KRNKPCPVCRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHH-----------HTTCCCTTTCCCCC
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHH-----------HcCCcCCCcCcchh
Confidence 34677999999999999987 99999 8999999987 34568999999874
No 57
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.3e-11 Score=77.88 Aligned_cols=48 Identities=29% Similarity=0.602 Sum_probs=39.0
Q ss_pred CcccCccccccCCC--------------Ceec-cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCccc
Q 041693 48 IELTCPVCLETVFD--------------PVSL-TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVY 106 (156)
Q Consensus 48 ~~l~C~IC~~~~~~--------------Pv~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 106 (156)
++..|+||++.|.+ ++.+ +|||.|+..||.+|+ .....||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl-----------~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWV-----------KQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHT-----------TTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHH-----------HhCCCCCCcCCCcch
Confidence 45679999998876 4455 599999999999998 445689999998754
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.16 E-value=1.4e-11 Score=98.23 Aligned_cols=53 Identities=26% Similarity=0.497 Sum_probs=44.8
Q ss_pred CCCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCC
Q 041693 46 LDIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQG 108 (156)
Q Consensus 46 ~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 108 (156)
......|+||++.+.+|+.++|||.||..|+..|+. .....||.||.++....
T Consensus 329 ~~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~----------~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 329 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQE----------SEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp TTSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHH----------HTCSBCTTTCCBCCEEE
T ss_pred cCCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHh----------cCCCCCCCCCCccCCce
Confidence 344589999999999999999999999999999971 14678999999986543
No 59
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.14 E-value=4.8e-12 Score=86.37 Aligned_cols=52 Identities=29% Similarity=0.727 Sum_probs=44.4
Q ss_pred CCcccCccccccCCCC-------eeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCc
Q 041693 47 DIELTCPVCLETVFDP-------VSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGA 109 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~P-------v~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 109 (156)
.+.+.|+||++.+.+| +.++|||+||..||.+|+ .....||+||..+...+.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL-----------KNANTCPTCRKKINHKRY 128 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHH-----------HHCSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHH-----------HcCCCCCCCCCcCChhcc
Confidence 5678999999999877 788999999999999998 345689999999876544
No 60
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.10 E-value=1.5e-11 Score=73.60 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=43.6
Q ss_pred cccCccccccCCCCeec-cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCccc
Q 041693 49 ELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGAIH 111 (156)
Q Consensus 49 ~l~C~IC~~~~~~Pv~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 111 (156)
.+.|||+++++.+||.+ ++||+|++.||.+|+. ....||+.+.++...+..+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~-----------~~~~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVK-----------DTGNDPITNEPLSIEEIVE 55 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHH-----------HHSBCTTTCCBCCGGGCEE
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHH-----------hCCCCcCCcCCCChhhcEE
Confidence 48899999999999999 8999999999999982 1235999999987666543
No 61
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.10 E-value=2.5e-11 Score=73.09 Aligned_cols=47 Identities=26% Similarity=0.579 Sum_probs=40.6
Q ss_pred CcccCccccccCCCCeec--cCCCc-ccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcc
Q 041693 48 IELTCPVCLETVFDPVSL--TCGHI-LCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGV 105 (156)
Q Consensus 48 ~~l~C~IC~~~~~~Pv~l--~CgH~-fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 105 (156)
....|+||++...+++.+ ||||. ||..|+.+++ .....||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~-----------~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLK-----------KAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHH-----------HTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHH-----------HhCCcCCCcCchhh
Confidence 356899999999999887 99998 9999999886 33478999999874
No 62
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.07 E-value=1.2e-10 Score=77.10 Aligned_cols=48 Identities=19% Similarity=0.442 Sum_probs=39.9
Q ss_pred CcccCccccccCCCC------------------eeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCccc
Q 041693 48 IELTCPVCLETVFDP------------------VSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVY 106 (156)
Q Consensus 48 ~~l~C~IC~~~~~~P------------------v~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 106 (156)
++..|+||++.|.++ +.++|||.|+..||.+|+ .....||+||+.+..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl-----------~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL-----------KTRQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHH-----------TTCSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHH-----------HcCCcCcCCCCccee
Confidence 456899999998866 336899999999999998 456789999998643
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.06 E-value=5.8e-11 Score=74.64 Aligned_cols=46 Identities=33% Similarity=0.757 Sum_probs=39.6
Q ss_pred CCCcccCccccccCCCCeeccCCCc-ccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCccc
Q 041693 46 LDIELTCPVCLETVFDPVSLTCGHI-LCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVY 106 (156)
Q Consensus 46 ~~~~l~C~IC~~~~~~Pv~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 106 (156)
+.++..|+||++.+.+|+.++|||. ||..|+..+ ..||.||..+..
T Consensus 15 l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 15 LKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL---------------QSCPVCRSRVEH 61 (79)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC---------------SBCTTTCCBCCE
T ss_pred CCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc---------------CcCCCCCchhhC
Confidence 3456899999999999999999999 999999433 389999998754
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=9.2e-11 Score=71.64 Aligned_cols=45 Identities=31% Similarity=0.664 Sum_probs=39.2
Q ss_pred CCcccCccccccCCCCeeccCCCc-ccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCccc
Q 041693 47 DIELTCPVCLETVFDPVSLTCGHI-LCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVY 106 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 106 (156)
.+...|+||++...+++.+||||. ||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~---------------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY---------------FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH---------------CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc---------------CCCCCCCCcchhc
Confidence 457899999999999999999999 99999953 3579999998854
No 65
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.89 E-value=2.5e-10 Score=90.10 Aligned_cols=47 Identities=43% Similarity=0.877 Sum_probs=40.8
Q ss_pred CCCCcccCccccccCCCCeeccCCCc-ccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCccc
Q 041693 45 RLDIELTCPVCLETVFDPVSLTCGHI-LCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVY 106 (156)
Q Consensus 45 ~~~~~l~C~IC~~~~~~Pv~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 106 (156)
.+.+++.|+||++.+.+|+.++|||. ||..|+..+ ..||.||.++..
T Consensus 291 ~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~---------------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 291 RLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL---------------RKCPICRGIIKG 338 (345)
T ss_dssp HHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC---------------SBCTTTCCBCCE
T ss_pred hCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC---------------CcCCCCCCCccC
Confidence 44567999999999999999999999 999999543 579999998853
No 66
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.80 E-value=6.1e-10 Score=74.90 Aligned_cols=46 Identities=22% Similarity=0.457 Sum_probs=0.4
Q ss_pred cccCccccccCCCC-----------------ee-ccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcc
Q 041693 49 ELTCPVCLETVFDP-----------------VS-LTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGV 105 (156)
Q Consensus 49 ~l~C~IC~~~~~~P-----------------v~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 105 (156)
+-.|+||++.|.++ +. ++|+|.|+..||.+|+ .....||+||.++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl-----------~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL-----------KTRQVCPLDNREWE 111 (117)
T ss_dssp C--------------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHH-----------HcCCcCCCCCCeee
Confidence 46899999998764 22 4899999999999998 44678999999864
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=2.6e-08 Score=62.57 Aligned_cols=52 Identities=19% Similarity=0.407 Sum_probs=41.4
Q ss_pred CCcccCccccccC--CCCeeccCC-----CcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccC
Q 041693 47 DIELTCPVCLETV--FDPVSLTCG-----HILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQ 107 (156)
Q Consensus 47 ~~~l~C~IC~~~~--~~Pv~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 107 (156)
.++..|.||++.+ .+++.+||+ |.|...||.+|+.. .....||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~---------~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS---------SDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH---------HCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh---------CCCCCCCCCCCeeecC
Confidence 4567899999877 467888996 99999999999832 2346899999998654
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.32 E-value=9.4e-07 Score=54.48 Aligned_cols=50 Identities=20% Similarity=0.414 Sum_probs=38.8
Q ss_pred CcccCccccccCCCCeec-cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCccc
Q 041693 48 IELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVY 106 (156)
Q Consensus 48 ~~l~C~IC~~~~~~Pv~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 106 (156)
..-.|.||++++..-..- .|+|.|-..||.+|+.+ .....||.||.....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~---------~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQS---------NAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTT---------CSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHh---------cCCCCCCCCcCcCCC
Confidence 346899999998754443 79999999999999821 223789999998754
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.21 E-value=6.5e-07 Score=57.80 Aligned_cols=46 Identities=22% Similarity=0.433 Sum_probs=36.5
Q ss_pred cCccccccCCCCe-eccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCccc
Q 041693 51 TCPVCLETVFDPV-SLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVY 106 (156)
Q Consensus 51 ~C~IC~~~~~~Pv-~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 106 (156)
.|++|.-.+..-. ++||+|.||.+|+..|. ......||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~----------~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHE----------KKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHH----------HTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHH----------hccCCCCcCcCCeeee
Confidence 5888888776554 46999999999999885 1456789999998754
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.95 E-value=4.7e-06 Score=65.30 Aligned_cols=60 Identities=20% Similarity=0.377 Sum_probs=40.7
Q ss_pred CCcccCccccccCCC----Cee----ccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCccc
Q 041693 47 DIELTCPVCLETVFD----PVS----LTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVY 106 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~----Pv~----l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 106 (156)
+....|+||+..+.+ |.. ..|||.|...||.+|+.........-+.....||.||.+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 356789999998865 322 369999999999999943221111111223579999998864
No 71
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=97.88 E-value=1.2e-05 Score=70.27 Aligned_cols=76 Identities=12% Similarity=0.029 Sum_probs=64.0
Q ss_pred cCCCCcccCccccccCCCCeeccCC-CcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCccchhhHHHHHHHH
Q 041693 44 IRLDIELTCPVCLETVFDPVSLTCG-HILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGAIHLTELGILLSRS 122 (156)
Q Consensus 44 ~~~~~~l~C~IC~~~~~~Pv~l~Cg-H~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~n~~l~~l 122 (156)
....+++.|||-++++.+||+++-| +||=+..|.+|+ .....||.=|.++...+.. .|..++..
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl-----------~~~~tdP~Tr~~L~~~~li----PN~~Lk~~ 950 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHL-----------LSDSTDPFNRMPLKLEDVT----PNEELRQK 950 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHH-----------TTCCBCTTTCCBCCGGGCE----ECHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHH-----------hcCCCCCCCCCCCCccccc----ccHHHHHH
Confidence 5667899999999999999999998 699999999998 3356899999998766553 68899999
Q ss_pred HHHHHHHHHhHH
Q 041693 123 CREYWEKRLQIE 134 (156)
Q Consensus 123 ~~~~~~~~~~~~ 134 (156)
++.|..++..++
T Consensus 951 I~~w~~~~~~~~ 962 (968)
T 3m62_A 951 ILCFKKQKKEEA 962 (968)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhhh
Confidence 999987766543
No 72
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.87 E-value=1e-05 Score=47.78 Aligned_cols=50 Identities=16% Similarity=0.348 Sum_probs=38.6
Q ss_pred CCcccCccccccCCCCeeccCC--C---cccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcc
Q 041693 47 DIELTCPVCLETVFDPVSLTCG--H---ILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGV 105 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv~l~Cg--H---~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 105 (156)
.+...|.||++-..++..+||. + .|-..||.+|++. ++...||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~---------~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI---------SRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH---------HTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHh---------CCCCccCCCCCeee
Confidence 3567899999877777777854 4 7999999999832 23578999998864
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.49 E-value=4.7e-05 Score=49.23 Aligned_cols=31 Identities=26% Similarity=0.596 Sum_probs=27.4
Q ss_pred CcccCcccccc-CCCCee--ccCCCcccHhhHHH
Q 041693 48 IELTCPVCLET-VFDPVS--LTCGHILCKMCACS 78 (156)
Q Consensus 48 ~~l~C~IC~~~-~~~Pv~--l~CgH~fC~~Ci~~ 78 (156)
+++.|+||.+. +.+|+. +.|+|+||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 46899999964 788888 89999999999987
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.48 E-value=0.0031 Score=47.07 Aligned_cols=49 Identities=20% Similarity=0.442 Sum_probs=38.6
Q ss_pred cccCccccccCCCCeec-cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCccc
Q 041693 49 ELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVY 106 (156)
Q Consensus 49 ~l~C~IC~~~~~~Pv~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 106 (156)
-..|.+|.++...-+.- .|+|.|...|+..|+. ......||.|+...+.
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~---------~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQ---------SNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTT---------TCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHH---------hCCCCCCCCCCCCCCC
Confidence 56799999998766655 4999999999999972 1345689999987654
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=95.41 E-value=0.033 Score=34.23 Aligned_cols=36 Identities=25% Similarity=0.566 Sum_probs=30.1
Q ss_pred CCcccCccccccCCCCeeccC----CCcccHhhHHHHHhh
Q 041693 47 DIELTCPVCLETVFDPVSLTC----GHILCKMCACSAASV 82 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv~l~C----gH~fC~~Ci~~~~~~ 82 (156)
...+.|.+|.+-+.+.....| +|.||..|-..+...
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 467999999999998877766 699999999888743
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.89 E-value=0.012 Score=37.26 Aligned_cols=46 Identities=22% Similarity=0.458 Sum_probs=35.4
Q ss_pred CcccCccccccCCCCeeccC-CCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCccc
Q 041693 48 IELTCPVCLETVFDPVSLTC-GHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVY 106 (156)
Q Consensus 48 ~~l~C~IC~~~~~~Pv~l~C-gH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 106 (156)
--+.|..|.-..+ -.+.| .|.+|..|+...+ ..+..||+|..++..
T Consensus 27 G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL-----------~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 27 GPQFCKSCWFENK--GLVECNNHYLCLNCLTLLL-----------SVSNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTC-----------SSSSEETTTTEECCC
T ss_pred CcccChhhccccC--CeeeecchhhHHHHHHHHH-----------hhccCCcccCCcCCc
Confidence 3467888876544 34567 5999999999887 677899999998764
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.34 E-value=0.015 Score=45.97 Aligned_cols=56 Identities=23% Similarity=0.464 Sum_probs=41.4
Q ss_pred CcccCccccccCCCCeec-cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCcc
Q 041693 48 IELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGAI 110 (156)
Q Consensus 48 ~~l~C~IC~~~~~~Pv~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 110 (156)
-.|.||+-...+..|+.. .|.|.-|.+- ..++..+ .....+.||+|.+.+...++.
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl-~sfL~~~------~~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDA-LWFLHSQ------LQIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEH-HHHHHHH------HHSCCCBCTTTCCBCCGGGEE
T ss_pred EeecCCCccccccccCcCCcCCCcceECH-HHHHHHh------hcCCceeCCCCCcccCHHHee
Confidence 358999999999999985 7999977664 2333211 126789999999988766553
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=93.60 E-value=0.025 Score=44.54 Aligned_cols=56 Identities=27% Similarity=0.547 Sum_probs=41.1
Q ss_pred CCcccCccccccCCCCeec-cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcccCCc
Q 041693 47 DIELTCPVCLETVFDPVSL-TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVYQGA 109 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 109 (156)
.-.|.||+-...+..|+.. .|.|.-|.+- ..|+..+. ....+.||+|.+.+...++
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl-~sfL~~~~------~~~~W~CPiC~k~~~~~dL 269 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDA-ALYLQMNE------KKPTWICPVCDKKAAYESL 269 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEH-HHHHHHHH------HSCCCBCTTTCSBCCGGGE
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCH-HHHHHHHh------hCCCeECCCCCcccCHHHe
Confidence 3368999999999999985 7999977653 23432211 2568999999999876555
No 79
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=87.58 E-value=1.5 Score=29.91 Aligned_cols=53 Identities=17% Similarity=0.369 Sum_probs=33.0
Q ss_pred CcccCccccccCCCCeec--cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCc
Q 041693 48 IELTCPVCLETVFDPVSL--TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRK 102 (156)
Q Consensus 48 ~~l~C~IC~~~~~~Pv~l--~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~ 102 (156)
.+..|.+|.+--. ... .|-.+||..||...+............+.+.||.|+.
T Consensus 62 ~~d~C~vC~~GG~--LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGGN--LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCSS--EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCCc--EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4567888887321 221 6999999999987652111111112366899999964
No 80
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=84.82 E-value=1.2 Score=27.89 Aligned_cols=48 Identities=23% Similarity=0.517 Sum_probs=34.6
Q ss_pred CcccCccccccCC-----CCeec--cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcc
Q 041693 48 IELTCPVCLETVF-----DPVSL--TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGV 105 (156)
Q Consensus 48 ~~l~C~IC~~~~~-----~Pv~l--~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 105 (156)
..-.|.||.+-.- ++... .|+-..|+.|+.--. ..+...||.|+....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr----------keG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER----------REGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH----------HTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHH----------hccCccccccCCccc
Confidence 3468999998642 22222 588889999996543 266789999998875
No 81
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=83.97 E-value=1.8 Score=25.36 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=32.2
Q ss_pred CcccCccccccCCCCeec--cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCc
Q 041693 48 IELTCPVCLETVFDPVSL--TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAG 104 (156)
Q Consensus 48 ~~l~C~IC~~~~~~Pv~l--~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 104 (156)
..-.|.||.+- .-+.+ .|...|...|+...+ .....+...||.|....
T Consensus 11 ~~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l-------~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAG-------TSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC--TTCEECSSSCCEECHHHHCTTT-------CCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC--CeEEECCCCCCceecccCCCcc-------CcCCCCCEECccccCCC
Confidence 34679999864 22232 599999999996444 11225578999997654
No 82
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=83.77 E-value=0.097 Score=26.84 Aligned_cols=17 Identities=18% Similarity=0.534 Sum_probs=13.6
Q ss_pred CcccCccccccCCCCee
Q 041693 48 IELTCPVCLETVFDPVS 64 (156)
Q Consensus 48 ~~l~C~IC~~~~~~Pv~ 64 (156)
+.++||+|+..+..+..
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 56999999998877643
No 83
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=83.56 E-value=0.8 Score=27.35 Aligned_cols=29 Identities=17% Similarity=0.466 Sum_probs=21.3
Q ss_pred cccCccccccCCCC---ee-ccCCCcccHhhHH
Q 041693 49 ELTCPVCLETVFDP---VS-LTCGHILCKMCAC 77 (156)
Q Consensus 49 ~l~C~IC~~~~~~P---v~-l~CgH~fC~~Ci~ 77 (156)
+-.|.+|...|.-- .. -.||.+||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 35899999877422 22 2699999999974
No 84
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=83.51 E-value=0.96 Score=29.55 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=35.9
Q ss_pred cccCccccccCCC---CeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCccc
Q 041693 49 ELTCPVCLETVFD---PVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVY 106 (156)
Q Consensus 49 ~l~C~IC~~~~~~---Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 106 (156)
-+.|..|...+.+ .....=|..||..|..+.+ .....|..|..+|..
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f-----------~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF-----------GNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHH-----------CCCCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHc-----------CCCCccccCCCCcCc
Confidence 4899999998863 3344578899999998876 333479999998864
No 85
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=81.61 E-value=0.64 Score=30.90 Aligned_cols=30 Identities=23% Similarity=0.568 Sum_probs=21.7
Q ss_pred cccCccccccCCCC---ee-ccCCCcccHhhHHH
Q 041693 49 ELTCPVCLETVFDP---VS-LTCGHILCKMCACS 78 (156)
Q Consensus 49 ~l~C~IC~~~~~~P---v~-l~CgH~fC~~Ci~~ 78 (156)
...|.+|...|.-- .. -.||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 35799999877422 22 26999999999743
No 86
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=80.48 E-value=1.6 Score=29.18 Aligned_cols=55 Identities=16% Similarity=0.299 Sum_probs=32.2
Q ss_pred CcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCc
Q 041693 48 IELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRK 102 (156)
Q Consensus 48 ~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~ 102 (156)
.+..|.+|.+--.-..--.|-..||..||.+.+................|+.|+.
T Consensus 56 ~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3456888886311000116899999999987642111111112366899999954
No 87
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=80.41 E-value=1 Score=27.63 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=22.4
Q ss_pred CcccCccccccCCCC---ee-ccCCCcccHhhHHH
Q 041693 48 IELTCPVCLETVFDP---VS-LTCGHILCKMCACS 78 (156)
Q Consensus 48 ~~l~C~IC~~~~~~P---v~-l~CgH~fC~~Ci~~ 78 (156)
+...|.+|...|.-- .. -.||++||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 456899999877422 22 26999999999743
No 88
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=80.34 E-value=1 Score=27.51 Aligned_cols=31 Identities=26% Similarity=0.645 Sum_probs=22.3
Q ss_pred CcccCccccccCCCC---ee-ccCCCcccHhhHHH
Q 041693 48 IELTCPVCLETVFDP---VS-LTCGHILCKMCACS 78 (156)
Q Consensus 48 ~~l~C~IC~~~~~~P---v~-l~CgH~fC~~Ci~~ 78 (156)
+...|.+|...|.-- .. -.||.+||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 345799999877422 22 26999999999854
No 89
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=80.32 E-value=1.8 Score=24.86 Aligned_cols=48 Identities=27% Similarity=0.509 Sum_probs=32.4
Q ss_pred CCCcccCccccccCCCCeec--cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCc
Q 041693 46 LDIELTCPVCLETVFDPVSL--TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRK 102 (156)
Q Consensus 46 ~~~~l~C~IC~~~~~~Pv~l--~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~ 102 (156)
...+..|.+|.+. .-+.+ .|...|...|+..-+ .....+...||.|..
T Consensus 8 ~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l-------~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDM-------EKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTC-------CSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCC-------CCCCCCceECccccc
Confidence 3456789999973 23332 588899999995432 112356799999965
No 90
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=80.06 E-value=1.3 Score=28.85 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=33.9
Q ss_pred CcccCccccccCCC-CeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCccc
Q 041693 48 IELTCPVCLETVFD-PVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVY 106 (156)
Q Consensus 48 ~~l~C~IC~~~~~~-Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 106 (156)
+-+.|..|...+.. +....=|..||..|..+.+ ...|..|..++..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~-------------~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH-------------AVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS-------------CCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc-------------CccCcccCCcCCc
Confidence 45899999998865 3344678899999997654 3568888777753
No 91
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.23 E-value=1.2 Score=27.38 Aligned_cols=31 Identities=26% Similarity=0.420 Sum_probs=22.0
Q ss_pred CcccCccccccCCCC---ee-ccCCCcccHhhHHH
Q 041693 48 IELTCPVCLETVFDP---VS-LTCGHILCKMCACS 78 (156)
Q Consensus 48 ~~l~C~IC~~~~~~P---v~-l~CgH~fC~~Ci~~ 78 (156)
+...|.+|...|.-- .- -.||.+||..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 345899999877322 12 26999999999743
No 92
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=79.01 E-value=0.92 Score=32.93 Aligned_cols=34 Identities=18% Similarity=0.428 Sum_probs=24.1
Q ss_pred CCCCcccCccccccCCC---Cee-ccCCCcccHhhHHH
Q 041693 45 RLDIELTCPVCLETVFD---PVS-LTCGHILCKMCACS 78 (156)
Q Consensus 45 ~~~~~l~C~IC~~~~~~---Pv~-l~CgH~fC~~Ci~~ 78 (156)
.+.+.-.|.+|...|.- -.. -.||+.||..|...
T Consensus 157 ~W~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 157 NWADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCCCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred cCCCCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 34456799999987742 222 26999999999743
No 93
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=77.39 E-value=2.2 Score=23.27 Aligned_cols=46 Identities=26% Similarity=0.547 Sum_probs=28.1
Q ss_pred cCccccccCCCCeec---cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcC
Q 041693 51 TCPVCLETVFDPVSL---TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKA 103 (156)
Q Consensus 51 ~C~IC~~~~~~Pv~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 103 (156)
.|.||...-..-..+ .|...|-..|+..-+ . ....+...||.|+..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l-----~--~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPAL-----Y--EVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTC-----C--SCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCc-----C--CCCCCcEECcCcccc
Confidence 477887653222222 588888899985332 1 112457889999753
No 94
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=77.34 E-value=4.4 Score=23.96 Aligned_cols=48 Identities=15% Similarity=0.371 Sum_probs=31.1
Q ss_pred CCcccCccccccCCCCeec--c--CC-CcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCc
Q 041693 47 DIELTCPVCLETVFDPVSL--T--CG-HILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAG 104 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv~l--~--Cg-H~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 104 (156)
.+...| +|.+......+. . |. .-|...|+. + .......+.||.|+...
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l-------~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--L-------TTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--C-------SSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--c-------CcCCCCCEECCCCCccc
Confidence 456788 899875554332 3 55 578888884 1 11224679999998754
No 95
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=77.15 E-value=4.9 Score=24.82 Aligned_cols=57 Identities=14% Similarity=0.274 Sum_probs=34.0
Q ss_pred cCCCCcccCccccccCCCCeec---cCCCcccHhhHHHHHhhhh-----hccccCCCCCCCCCCCC
Q 041693 44 IRLDIELTCPVCLETVFDPVSL---TCGHILCKMCACSAASVSI-----VDGLKLADPTEKCPLCR 101 (156)
Q Consensus 44 ~~~~~~l~C~IC~~~~~~Pv~l---~CgH~fC~~Ci~~~~~~~~-----~~~~~~~~~~~~CP~Cr 101 (156)
..+..+-.|.||...- .-..+ -|+..|-..|+.+.--.+. ............||.|.
T Consensus 10 e~~~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 10 EPVVNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CCCCCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred cCCCCCcccCcccccc-ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 3445678999998543 33333 3899999999987520000 00111224578999994
No 96
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=76.82 E-value=0.73 Score=29.74 Aligned_cols=30 Identities=17% Similarity=0.469 Sum_probs=20.1
Q ss_pred CCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcc
Q 041693 60 FDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGV 105 (156)
Q Consensus 60 ~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 105 (156)
..|....||++|+. .......||.|+..-.
T Consensus 66 ~p~~C~~CG~~F~~----------------~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 66 KPAQCRKCGFVFKA----------------EINIPSRCPKCKSEWI 95 (105)
T ss_dssp CCCBBTTTCCBCCC----------------CSSCCSSCSSSCCCCB
T ss_pred ECcChhhCcCeecc----------------cCCCCCCCcCCCCCcc
Confidence 44555689999921 1255688999998654
No 97
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=76.36 E-value=1.2 Score=27.61 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=22.2
Q ss_pred CcccCccccccCCCC---ee-ccCCCcccHhhHHH
Q 041693 48 IELTCPVCLETVFDP---VS-LTCGHILCKMCACS 78 (156)
Q Consensus 48 ~~l~C~IC~~~~~~P---v~-l~CgH~fC~~Ci~~ 78 (156)
+...|.+|...|.-- .. -.||++||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 445899999876422 11 26999999999854
No 98
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=75.58 E-value=2 Score=28.10 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=25.6
Q ss_pred CcccCccccccCC---CCeeccCCCcccHhhHHHHH
Q 041693 48 IELTCPVCLETVF---DPVSLTCGHILCKMCACSAA 80 (156)
Q Consensus 48 ~~l~C~IC~~~~~---~Pv~l~CgH~fC~~Ci~~~~ 80 (156)
+-+.|..|...+. .+....=|..||..|..+.+
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~ 63 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLF 63 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHH
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhC
Confidence 4689999999885 24455678889999998776
No 99
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.26 E-value=4.8 Score=25.16 Aligned_cols=49 Identities=14% Similarity=0.348 Sum_probs=30.6
Q ss_pred CCCcccCccccccCCCCeec--c--CC-CcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCc
Q 041693 46 LDIELTCPVCLETVFDPVSL--T--CG-HILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAG 104 (156)
Q Consensus 46 ~~~~l~C~IC~~~~~~Pv~l--~--Cg-H~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 104 (156)
..+...| +|.+......+. . |. .-|...|+. + .......+.||.|+...
T Consensus 33 ~~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg--l-------~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 33 PNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--L-------TTKPRGKWFCPRCSQES 86 (91)
T ss_dssp SCCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT--C-------SSCCCSSCCCTTTCCCC
T ss_pred CCCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCC--c-------CcCCCCCEECcCccCcC
Confidence 3456788 999976543222 3 54 467788884 1 11124579999998754
No 100
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=74.74 E-value=0.12 Score=32.84 Aligned_cols=40 Identities=28% Similarity=0.644 Sum_probs=27.0
Q ss_pred ccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcc
Q 041693 50 LTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGV 105 (156)
Q Consensus 50 l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 105 (156)
..||.|...+.. .=++.+|..|-..+ .....||.|.+++.
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f------------~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFI------------EMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEE------------EEEEECTTTCSBCE
T ss_pred ccCccCCCccee----cCCEEECccccchh------------hccccCcchhhHHH
Confidence 899999986531 12344588886443 33567999998864
No 101
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=74.14 E-value=1.6 Score=31.83 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=23.4
Q ss_pred CCCcccCccccccCCCC---e-eccCCCcccHhhHHH
Q 041693 46 LDIELTCPVCLETVFDP---V-SLTCGHILCKMCACS 78 (156)
Q Consensus 46 ~~~~l~C~IC~~~~~~P---v-~l~CgH~fC~~Ci~~ 78 (156)
+.+.-.|.+|...|.-- . --.||++||..|...
T Consensus 161 W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 161 WVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cccCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 34456899999876421 2 236999999999754
No 102
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=74.07 E-value=1.2 Score=26.55 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=33.6
Q ss_pred CCcccCccccccCCCCeec---cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcc
Q 041693 47 DIELTCPVCLETVFDPVSL---TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGV 105 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 105 (156)
.+...|++|......-..+ .|..-|-..|+.-.. .......+.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~-------~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMA-------APPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSS-------CCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCc-------cCCCCCCEEChhccCchh
Confidence 4567899999875442333 588888888984221 111235789999977653
No 103
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=73.82 E-value=1.5 Score=29.00 Aligned_cols=33 Identities=21% Similarity=0.599 Sum_probs=21.7
Q ss_pred CCcccCccccccCCCC----eeccCCCcccHhhHHHH
Q 041693 47 DIELTCPVCLETVFDP----VSLTCGHILCKMCACSA 79 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~P----v~l~CgH~fC~~Ci~~~ 79 (156)
.+...|..|...|.-- .--.||.+||..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~ 53 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQV 53 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCC
Confidence 3456899999877432 12369999999997443
No 104
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=73.80 E-value=3.6 Score=28.25 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=24.7
Q ss_pred CcccCccccccCCCCeeccCCCcccHhhHHHHH
Q 041693 48 IELTCPVCLETVFDPVSLTCGHILCKMCACSAA 80 (156)
Q Consensus 48 ~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~ 80 (156)
+-+.|..|...|.......=|..||..|..+.+
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f 64 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF 64 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH
T ss_pred ccCccCCCCCcCCCCCcccCCeeeecccccccc
Confidence 458999999887654334457889999987765
No 105
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=73.41 E-value=1.2 Score=27.40 Aligned_cols=29 Identities=17% Similarity=0.395 Sum_probs=19.9
Q ss_pred cCccccccCC-----CCeecc-CCCcccHhhHHHH
Q 041693 51 TCPVCLETVF-----DPVSLT-CGHILCKMCACSA 79 (156)
Q Consensus 51 ~C~IC~~~~~-----~Pv~l~-CgH~fC~~Ci~~~ 79 (156)
-||-|...+. .+++-+ |++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 3888877542 234545 9999999997544
No 106
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=72.93 E-value=1.8 Score=26.86 Aligned_cols=32 Identities=19% Similarity=0.465 Sum_probs=22.4
Q ss_pred CcccCccccccCCC---Cee-ccCCCcccHhhHHHH
Q 041693 48 IELTCPVCLETVFD---PVS-LTCGHILCKMCACSA 79 (156)
Q Consensus 48 ~~l~C~IC~~~~~~---Pv~-l~CgH~fC~~Ci~~~ 79 (156)
+...|.+|...|.- -.. -.||++||..|....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 34579999987642 122 369999999998543
No 107
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=72.53 E-value=3.3 Score=23.75 Aligned_cols=40 Identities=25% Similarity=0.600 Sum_probs=28.2
Q ss_pred ccCccccccCCCCee---ccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCC
Q 041693 50 LTCPVCLETVFDPVS---LTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLC 100 (156)
Q Consensus 50 l~C~IC~~~~~~Pv~---l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~C 100 (156)
..|-.|+..+.+... ..|++.||.+|=.= ....-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~f-----------iHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVF-----------VHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHT-----------TTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHH-----------HHhhccCCcCC
Confidence 358889888866542 25999999999531 13556789987
No 108
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=71.91 E-value=2.4 Score=24.30 Aligned_cols=49 Identities=18% Similarity=0.342 Sum_probs=31.0
Q ss_pred CCcccCccccccCCCCeec--cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCc
Q 041693 47 DIELTCPVCLETVFDPVSL--TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAG 104 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv~l--~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 104 (156)
..+..|.+|.+- .-+.+ .|...|...|+..-+ .....+...||.|....
T Consensus 7 ~~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl-------~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG--GELLCCDTCPSSYHIHCLNPPL-------PEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSCC-------SSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC--CCEEEcCCCCHHHcccccCCCc-------CcCCCCccCChhhcCch
Confidence 346789999863 22222 588888888885332 11224578999997653
No 109
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=71.85 E-value=3.1 Score=29.01 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=20.5
Q ss_pred cccCccccccCCCCeeccCCCcccHhhHHHHH
Q 041693 49 ELTCPVCLETVFDPVSLTCGHILCKMCACSAA 80 (156)
Q Consensus 49 ~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~ 80 (156)
-+.|..|...|.......=|..||..|..+.+
T Consensus 87 CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f 118 (182)
T 2jtn_A 87 CLKCSDCHVPLAERCFSRGESVYCKDDFFKRF 118 (182)
T ss_dssp TTSCTTTCCCCSSCCEEETTEEECHHHHHHTT
T ss_pred cCccCCCCCccCCCceeECCEeeecCcccccc
Confidence 46777777766543223346778888886654
No 110
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=69.28 E-value=5.7 Score=31.50 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=25.3
Q ss_pred cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcC
Q 041693 66 TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKA 103 (156)
Q Consensus 66 ~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 103 (156)
.|...||..||.+.+........ .....+.|=+|.-.
T Consensus 112 ~C~r~FC~~Ci~~n~g~~~~~~i-~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 112 DCTRCYCFECVDSLVGPGTSGKV-HAMSNWVCYLCLPS 148 (386)
T ss_dssp TCCCEECHHHHHHHTCTTHHHHH-HHCSSCCCTTTSSC
T ss_pred CCCcchHHHHHHHhcChhHHHHh-hccCCceEEEcCCc
Confidence 68899999999988743222221 12467899999755
No 111
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=69.15 E-value=2.3 Score=26.45 Aligned_cols=46 Identities=28% Similarity=0.524 Sum_probs=33.8
Q ss_pred CcccCccccccCCCC-eeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCccc
Q 041693 48 IELTCPVCLETVFDP-VSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVY 106 (156)
Q Consensus 48 ~~l~C~IC~~~~~~P-v~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 106 (156)
+=+.|..|...+... ....=|..||..|..+. ....|..|..++..
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~-------------~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRE-------------DSPKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTC-------------CCCBCSSSCCBCCS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhh-------------cCCccccCCCcccc
Confidence 458899999888543 33456889999998433 35689999998863
No 112
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=67.96 E-value=1.3 Score=31.11 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=25.1
Q ss_pred CcccCccccccCCC---CeeccCCCcccHhhHHHHH
Q 041693 48 IELTCPVCLETVFD---PVSLTCGHILCKMCACSAA 80 (156)
Q Consensus 48 ~~l~C~IC~~~~~~---Pv~l~CgH~fC~~Ci~~~~ 80 (156)
+-|.|..|...|.. +....=|..||..|..+.+
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~ 66 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF 66 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHH
T ss_pred cCcccCCCCcccccCCceEEEeCCcccccccccccc
Confidence 45889999888763 4455568889999998766
No 113
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=67.63 E-value=5 Score=25.25 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=28.6
Q ss_pred CcccCccccccCCCCeec---cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCc
Q 041693 48 IELTCPVCLETVFDPVSL---TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRK 102 (156)
Q Consensus 48 ~~l~C~IC~~~~~~Pv~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~ 102 (156)
+...| ||......-.++ .|..-|-..|+.--. ......+.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~--------~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDR--------QHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCT--------TSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCc--------cCCCCCEECCCCcC
Confidence 44677 898766444444 477777788873211 11223689999974
No 114
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=67.22 E-value=3.3 Score=25.88 Aligned_cols=48 Identities=15% Similarity=0.337 Sum_probs=28.6
Q ss_pred CCCCcccCccccccCCCCeec--cCC---CcccHhhHHHHHhhhhhccccCCCCCCCCCC-CCc
Q 041693 45 RLDIELTCPVCLETVFDPVSL--TCG---HILCKMCACSAASVSIVDGLKLADPTEKCPL-CRK 102 (156)
Q Consensus 45 ~~~~~l~C~IC~~~~~~Pv~l--~Cg---H~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~-Cr~ 102 (156)
...+.+.| ||........+. .|. .-|...|+. + .....+.+.||. |+.
T Consensus 22 ~~~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVg--l-------~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 22 NNQEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVG--L-------KQAPKGKWYCSKDCKE 75 (90)
T ss_dssp --CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSS--C-------SSCTTSCCCSSHHHHH
T ss_pred CCCCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCC--C-------CcCCCCCccCChhhcc
Confidence 34566788 999865554332 333 567788873 1 111245789999 864
No 115
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=66.82 E-value=2.1 Score=27.21 Aligned_cols=12 Identities=17% Similarity=0.415 Sum_probs=10.5
Q ss_pred cccHhhHHHHHh
Q 041693 70 ILCKMCACSAAS 81 (156)
Q Consensus 70 ~fC~~Ci~~~~~ 81 (156)
.||+.|+.+|..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999983
No 116
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=66.69 E-value=2.1 Score=27.24 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=10.5
Q ss_pred cccHhhHHHHHh
Q 041693 70 ILCKMCACSAAS 81 (156)
Q Consensus 70 ~fC~~Ci~~~~~ 81 (156)
.||+.|+.+|..
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999984
No 117
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=66.46 E-value=0.27 Score=30.28 Aligned_cols=10 Identities=50% Similarity=1.338 Sum_probs=7.1
Q ss_pred ccCccccccC
Q 041693 50 LTCPVCLETV 59 (156)
Q Consensus 50 l~C~IC~~~~ 59 (156)
..||.|...+
T Consensus 3 ~~CP~C~~~l 12 (81)
T 2jrp_A 3 ITCPVCHHAL 12 (81)
T ss_dssp CCCSSSCSCC
T ss_pred CCCCCCCCcc
Confidence 5778887655
No 118
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=65.56 E-value=1 Score=27.38 Aligned_cols=31 Identities=26% Similarity=0.714 Sum_probs=21.1
Q ss_pred cccCcc--ccccCC-----CCeec------cCCCcccHhhHHHH
Q 041693 49 ELTCPV--CLETVF-----DPVSL------TCGHILCKMCACSA 79 (156)
Q Consensus 49 ~l~C~I--C~~~~~-----~Pv~l------~CgH~fC~~Ci~~~ 79 (156)
..-||- |...+. ..+.- .||+.||..|...|
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAY 68 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEEC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccc
Confidence 456876 776542 22343 58999999998655
No 119
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=65.24 E-value=1 Score=34.66 Aligned_cols=46 Identities=24% Similarity=0.586 Sum_probs=29.8
Q ss_pred CCcccCccccccCCCCeec----cCC--CcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcC
Q 041693 47 DIELTCPVCLETVFDPVSL----TCG--HILCKMCACSAASVSIVDGLKLADPTEKCPLCRKA 103 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv~l----~Cg--H~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 103 (156)
...-.||+|.....-.+.. .=| +-+|..|-..|- -....||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~-----------~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWH-----------YVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEE-----------CCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEe-----------ecCcCCcCCCCC
Confidence 5568999999865443332 123 456888887774 456677777764
No 120
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=65.00 E-value=2.5 Score=28.44 Aligned_cols=30 Identities=23% Similarity=0.472 Sum_probs=22.1
Q ss_pred CCcccCccccccCC---CCe--eccCCCcccHhhH
Q 041693 47 DIELTCPVCLETVF---DPV--SLTCGHILCKMCA 76 (156)
Q Consensus 47 ~~~l~C~IC~~~~~---~Pv--~l~CgH~fC~~Ci 76 (156)
...-.|.+|...|- .+- -..|.|.+|..|-
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 45678999999772 222 2369999999996
No 121
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=65.00 E-value=0.79 Score=26.41 Aligned_cols=32 Identities=22% Similarity=0.488 Sum_probs=21.8
Q ss_pred cccCccccccCCCC-----eecc---CCCcccHhhHHHHH
Q 041693 49 ELTCPVCLETVFDP-----VSLT---CGHILCKMCACSAA 80 (156)
Q Consensus 49 ~l~C~IC~~~~~~P-----v~l~---CgH~fC~~Ci~~~~ 80 (156)
.-.||-|...+... ++-. |++.||..|...|.
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcc
Confidence 35788888877543 2323 88888888886663
No 122
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=63.69 E-value=7.5 Score=22.64 Aligned_cols=44 Identities=20% Similarity=0.159 Sum_probs=32.0
Q ss_pred CcccCccccccCCC-CeeccCCCcccH-hhHHHHHhhhhhccccCCCCCCCCCCCCcCc
Q 041693 48 IELTCPVCLETVFD-PVSLTCGHILCK-MCACSAASVSIVDGLKLADPTEKCPLCRKAG 104 (156)
Q Consensus 48 ~~l~C~IC~~~~~~-Pv~l~CgH~fC~-~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 104 (156)
+-+.|..|...+.. +....=|..||. .|..+.+ ...|..|....
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f-------------~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF-------------GPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS-------------SCCCSSCCCSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHh-------------CccCCCcCCce
Confidence 45889999998865 444556889999 6997664 45688887554
No 123
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=62.00 E-value=3.9 Score=28.66 Aligned_cols=48 Identities=19% Similarity=0.378 Sum_probs=30.2
Q ss_pred CcccCccccccCCCCeec--cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCc
Q 041693 48 IELTCPVCLETVFDPVSL--TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAG 104 (156)
Q Consensus 48 ~~l~C~IC~~~~~~Pv~l--~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 104 (156)
.+-.|.+|.+-=. ..+ .|...|...|+...+ .....+.+.||.|+...
T Consensus 3 ~~~~C~~C~~~g~--ll~Cd~C~~~~H~~C~~p~l-------~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGGE--LLCCEKCPKVFHLSCHVPTL-------TNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCSS--CEECSSSSCEECTTTSSSCC-------SSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCCe--eeecCCCCcccCccccCCCC-------CCCCCCCEECccccCcc
Confidence 3456999986421 222 588888888875433 11124578999998754
No 124
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=60.84 E-value=1.8 Score=34.32 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=0.0
Q ss_pred CcccCccccccCCCC----eeccCCCcccHhhHHHHH
Q 041693 48 IELTCPVCLETVFDP----VSLTCGHILCKMCACSAA 80 (156)
Q Consensus 48 ~~l~C~IC~~~~~~P----v~l~CgH~fC~~Ci~~~~ 80 (156)
+...|.+|...|.-- ..-.||++||..|.....
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp -------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 356799999877421 123699999999986543
No 125
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=60.83 E-value=4.7 Score=24.91 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=20.6
Q ss_pred cccCccccccCC--CCeeccCCCcccHh
Q 041693 49 ELTCPVCLETVF--DPVSLTCGHILCKM 74 (156)
Q Consensus 49 ~l~C~IC~~~~~--~Pv~l~CgH~fC~~ 74 (156)
...|..|...+- .+..-.||.+||..
T Consensus 25 ~~rC~~C~kkvgl~~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSFECRCGNNFCAS 52 (85)
T ss_dssp CCBCSSSCCBCSSSSCEECTTCCEECTT
T ss_pred CccchhhCCeecccCCeEcCCCCEeccc
Confidence 468999998543 37777899999975
No 126
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=60.66 E-value=7.2 Score=27.57 Aligned_cols=53 Identities=17% Similarity=0.343 Sum_probs=30.1
Q ss_pred ccCccccccCCCCe----ec---cCCCcccHhhHHHHHhhhhhcccc--CCCCCCCCCCCCcCc
Q 041693 50 LTCPVCLETVFDPV----SL---TCGHILCKMCACSAASVSIVDGLK--LADPTEKCPLCRKAG 104 (156)
Q Consensus 50 l~C~IC~~~~~~Pv----~l---~CgH~fC~~Ci~~~~~~~~~~~~~--~~~~~~~CP~Cr~~~ 104 (156)
..||||...+.+.- .+ .|..=|...|..-.- ....... +......||.|+...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~--~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSD--EMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCH--HHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCH--HHHHHhhcCCCCCeeECcCCCCCC
Confidence 46999999886542 44 477677777762110 0000000 011368999998864
No 127
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.20 E-value=1.4 Score=24.74 Aligned_cols=47 Identities=21% Similarity=0.474 Sum_probs=29.5
Q ss_pred CCcccCccccccCCCCeec--cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCc
Q 041693 47 DIELTCPVCLETVFDPVSL--TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRK 102 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv~l--~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~ 102 (156)
..+..|.+|.+. ..+.+ .|...|...|+..-+ .....+...||.|..
T Consensus 7 ~~~~~C~vC~~~--g~ll~Cd~C~~~~H~~Cl~ppl-------~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPL-------KTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS--SCCEECSSSSCEECSSSSSSCC-------CSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC--CeEEEcCCCCcceECccCCCCc-------CCCCCCceEChhhhC
Confidence 456789999974 22222 588888888885332 112245678888853
No 128
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=59.45 E-value=4.1 Score=28.00 Aligned_cols=46 Identities=28% Similarity=0.620 Sum_probs=30.8
Q ss_pred CcccCccccccC---CCCee--ccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcC
Q 041693 48 IELTCPVCLETV---FDPVS--LTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKA 103 (156)
Q Consensus 48 ~~l~C~IC~~~~---~~Pv~--l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 103 (156)
.+-.|.+|...| .++-. ..|.|.+|..|-. + ........|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~---------~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-A---------HPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-C---------CSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-c---------cCCCCcEeeHHHHHH
Confidence 468999999975 22222 3799999999962 1 112456778777553
No 129
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=59.15 E-value=5.2 Score=24.70 Aligned_cols=52 Identities=17% Similarity=0.445 Sum_probs=33.9
Q ss_pred CCCCcccCccccccC-CCC-eec---cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcc
Q 041693 45 RLDIELTCPVCLETV-FDP-VSL---TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGV 105 (156)
Q Consensus 45 ~~~~~l~C~IC~~~~-~~P-v~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 105 (156)
...++..|.||...- .+. .++ .|.-.|-..|+..- ....+.+.||.|.....
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~---------~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP---------YIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCS---------SCCSSCCCCHHHHHHTT
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCC---------ccCCCceECccccCccc
Confidence 345678999999753 111 223 58888889998421 12356899999976543
No 130
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=59.05 E-value=11 Score=22.29 Aligned_cols=48 Identities=15% Similarity=0.461 Sum_probs=31.7
Q ss_pred CCCcccCccccccC---CCCeec--cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCc
Q 041693 46 LDIELTCPVCLETV---FDPVSL--TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRK 102 (156)
Q Consensus 46 ~~~~l~C~IC~~~~---~~Pv~l--~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~ 102 (156)
..++..|.||.+.- .+...+ .|.-.|-..|+.-- ....+...||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~---------~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP---------YIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS---------SCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC---------cCCCCCcCCccCcC
Confidence 34578899998753 223333 58888999998421 12356788998854
No 131
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=55.15 E-value=3.5 Score=29.48 Aligned_cols=48 Identities=23% Similarity=0.484 Sum_probs=30.6
Q ss_pred CcccCccccccCCCCeec--cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCc
Q 041693 48 IELTCPVCLETVFDPVSL--TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAG 104 (156)
Q Consensus 48 ~~l~C~IC~~~~~~Pv~l--~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 104 (156)
.+..|.+|.+-- -+.+ .|...|...|+...+ .....+.+.||.|+...
T Consensus 6 ~~~~C~~C~~~g--~ll~Cd~C~~~~H~~Cl~p~l-------~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNGG--DLLCCEKCPKVFHLTCHVPTL-------LSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCCE--EEEECSSSSCEECTTTSSSCC-------SSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC--ceEEcCCCCCccCCccCCCCC-------CCCCCCCEEeCceeCcc
Confidence 345699998532 1222 588888888985433 11225579999998754
No 132
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=53.58 E-value=10 Score=23.50 Aligned_cols=49 Identities=20% Similarity=0.420 Sum_probs=32.1
Q ss_pred CCcccCccccccCCCCeec--cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCc
Q 041693 47 DIELTCPVCLETVFDPVSL--TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAG 104 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv~l--~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 104 (156)
..+..|.+|.+-- ...+ .|...|-..|+..-+ .....+...||.|...-
T Consensus 23 ~n~~~C~vC~~~g--~LL~CD~C~~~fH~~Cl~PpL-------~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 23 DSATICRVCQKPG--DLVMCNQCEFCFHLDCHLPAL-------QDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSCCSSSCSSS--CCEECTTSSCEECTTSSSTTC-------CCCCSSSCCCCSCCCCC
T ss_pred CCCCcCcCcCCCC--CEEECCCCCCceecccCCCCC-------CCCcCCCcCCccccCCC
Confidence 4567899999742 2222 588888888885443 11235678999998653
No 133
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=52.57 E-value=6.6 Score=25.22 Aligned_cols=45 Identities=20% Similarity=0.474 Sum_probs=26.9
Q ss_pred cCccccccCCCC-eec---cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCc
Q 041693 51 TCPVCLETVFDP-VSL---TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRK 102 (156)
Q Consensus 51 ~C~IC~~~~~~P-v~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~ 102 (156)
.|.+|...-.++ ..+ .|...|...|+..-+ . ....+...||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l-----~--~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPL-----T--RMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCC-----S--SCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCC-----C--CCCCCCeECCCCCC
Confidence 455666542222 222 588888888985433 1 12245789999975
No 134
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=51.53 E-value=8.3 Score=27.22 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=27.2
Q ss_pred ccCccccccCCCCee--ccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCc
Q 041693 50 LTCPVCLETVFDPVS--LTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAG 104 (156)
Q Consensus 50 l~C~IC~~~~~~Pv~--l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 104 (156)
-.|.+|.+--. .. -.|...|...|+..-+ .....+.+.||.|+...
T Consensus 3 ~~C~~C~~~g~--ll~Cd~C~~~~H~~Cl~p~l-------~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKPGD--LVMCNQCEFCFHLDCHLPAL-------QDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCCSS--CCCCTTTCCBCCSTTSTTCC-------SSCCCTTCCTTTTSCSC
T ss_pred CcCccCCCCCc--eeECCCCCchhccccCCCCc-------ccCCCCCCCCcCccCCC
Confidence 45788875321 11 1477778888875332 11225678899998653
No 135
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=51.49 E-value=4.6 Score=22.93 Aligned_cols=46 Identities=15% Similarity=0.354 Sum_probs=28.1
Q ss_pred CCcccCccccccCCCCeec--c--CC-CcccHhhHHHHHhhhhhccccCCCCCCCCCCCCc
Q 041693 47 DIELTCPVCLETVFDPVSL--T--CG-HILCKMCACSAASVSIVDGLKLADPTEKCPLCRK 102 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv~l--~--Cg-H~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~ 102 (156)
.+...| +|.+......+. . |. .-|...|+. + .....+...||.|+.
T Consensus 7 ~e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvg--l-------~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVD--L-------TTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--C-------SSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCC--c-------ccCCCCCEECcCccC
Confidence 456778 899865443322 3 65 578888884 1 111235788998864
No 136
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=51.23 E-value=4.6 Score=23.19 Aligned_cols=45 Identities=18% Similarity=0.424 Sum_probs=28.2
Q ss_pred CCcccCccccccCCCCeec---c--CC-CcccHhhHHHHHhhhhhccccCCCCCCCCCCCCc
Q 041693 47 DIELTCPVCLETVFDPVSL---T--CG-HILCKMCACSAASVSIVDGLKLADPTEKCPLCRK 102 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv~l---~--Cg-H~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~ 102 (156)
.+...| +|.+.... ..+ . |. .-|...|+.- .....+...||.|+.
T Consensus 9 ~e~~yC-~C~~~~~g-~MI~CD~c~C~~~WfH~~Cvgl---------~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVSYG-EMIGCDNEQCPIEWFHFSCVSL---------TYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEECCS-EEEECSCTTCSSCEEETGGGTC---------SSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCCCC-CeeeeeCCCCCcccEecccCCc---------CcCCCCCEECcCccc
Confidence 456778 99986544 344 3 54 6788888841 112246788999865
No 137
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=50.75 E-value=17 Score=25.07 Aligned_cols=52 Identities=15% Similarity=0.437 Sum_probs=32.0
Q ss_pred cccCccccccCCCCeec----cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcC
Q 041693 49 ELTCPVCLETVFDPVSL----TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKA 103 (156)
Q Consensus 49 ~l~C~IC~~~~~~Pv~l----~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 103 (156)
+..|.+|.+-- -+.+ .|...||..||...++....... .......|-+|.-.
T Consensus 79 ~~yC~wC~~Gg--~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i-~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 79 QSYCTICCGGR--EVLMCGNNNCCRCFCVECVDLLVGPGAAQAA-IKEDPWNCYMCGHK 134 (159)
T ss_dssp BSSCTTTSCCS--EEEECSSTTTCCEEEHHHHHHHTCTTHHHHH-HTSSSCCCTTTCSS
T ss_pred cceeeEecCCC--eEEeeCCCCCCCchhHHHHHHhcCHhHHHHH-hccCCCEEEecCCc
Confidence 45666666521 1211 48889999999988754222221 22567899999754
No 138
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=50.28 E-value=7.5 Score=33.00 Aligned_cols=55 Identities=24% Similarity=0.467 Sum_probs=37.8
Q ss_pred CCcccCccccccCCCCe----------eccCCCcc--------------------cHhhHHHHHhhhhhccccCCCCCCC
Q 041693 47 DIELTCPVCLETVFDPV----------SLTCGHIL--------------------CKMCACSAASVSIVDGLKLADPTEK 96 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv----------~l~CgH~f--------------------C~~Ci~~~~~~~~~~~~~~~~~~~~ 96 (156)
.|--+|+-|+.-+.+|. .+.||..| |..|...|-++..+ +-.-....
T Consensus 15 pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dR---RfHAqp~a 91 (657)
T 3ttc_A 15 PDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDR---RFHAQPVA 91 (657)
T ss_dssp CCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTST---TTTCTTCC
T ss_pred CchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCC---cCcCCCCc
Confidence 45679999998776663 23577655 99999999743221 11234578
Q ss_pred CCCCCcCc
Q 041693 97 CPLCRKAG 104 (156)
Q Consensus 97 CP~Cr~~~ 104 (156)
||.|.-.+
T Consensus 92 Cp~CGP~l 99 (657)
T 3ttc_A 92 CPECGPYL 99 (657)
T ss_dssp CTTTSCCE
T ss_pred CcccCccc
Confidence 99998877
No 139
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=48.43 E-value=14 Score=32.04 Aligned_cols=57 Identities=23% Similarity=0.532 Sum_probs=39.2
Q ss_pred CCcccCccccccCCCCe--------e--ccCCCcc--------------------cHhhHHHHHhhhhhccccCCCCCCC
Q 041693 47 DIELTCPVCLETVFDPV--------S--LTCGHIL--------------------CKMCACSAASVSIVDGLKLADPTEK 96 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv--------~--l~CgH~f--------------------C~~Ci~~~~~~~~~~~~~~~~~~~~ 96 (156)
.|--+|+-|+.-+.+|. + +.||..| |..|...|-++..+ +-.-....
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dR---RfhAqp~a 180 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNR---RYHAEPTA 180 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSST---TTTCTTCC
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCC---CCcCCCCC
Confidence 46679999998777663 2 3577755 99999999643221 11233578
Q ss_pred CCCCCcCccc
Q 041693 97 CPLCRKAGVY 106 (156)
Q Consensus 97 CP~Cr~~~~~ 106 (156)
||.|.-.+..
T Consensus 181 C~~CGP~l~l 190 (772)
T 4g9i_A 181 CPVCGPSYRL 190 (772)
T ss_dssp CTTTSCCEEE
T ss_pred CccCCceEEE
Confidence 9999987754
No 140
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=48.37 E-value=4.6 Score=23.07 Aligned_cols=51 Identities=18% Similarity=0.284 Sum_probs=30.4
Q ss_pred CCcccCccccccCCC-Ceec---cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcC
Q 041693 47 DIELTCPVCLETVFD-PVSL---TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKA 103 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~-Pv~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 103 (156)
.+...|++|...+.+ -..+ .|..=|...|+.-.. ........+.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~------~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITP------ARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCT------TGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcCh------hHhcCCCcEECCCCcCc
Confidence 467889999987732 2233 466667777773211 00111357899999764
No 141
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=47.89 E-value=4.4 Score=22.92 Aligned_cols=47 Identities=21% Similarity=0.472 Sum_probs=29.5
Q ss_pred CcccCccccccCCCCeec--cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcC
Q 041693 48 IELTCPVCLETVFDPVSL--TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKA 103 (156)
Q Consensus 48 ~~l~C~IC~~~~~~Pv~l--~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 103 (156)
.+..|.+|... ..+.. .|...|-..|+..-+ .....+...||.|...
T Consensus 4 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl-------~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPL-------KTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC--SSCEECSSSSCEECGGGSSSCC-------SSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC--CcEEEcCCCCcCEECCcCCCCc-------CCCCCCceEChhccCh
Confidence 45689999874 22222 588888888885332 1122457889988543
No 142
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.67 E-value=13 Score=21.77 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=19.1
Q ss_pred CCcccCccccccCCCCeeccCCCcccHhhH
Q 041693 47 DIELTCPVCLETVFDPVSLTCGHILCKMCA 76 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci 76 (156)
.....|..|.+.+...++..-+..|...|+
T Consensus 13 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF 42 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFVKLRDRHRHPECY 42 (79)
T ss_dssp CCCCCCSSSCCCCCSSCEECSSCEECTTTT
T ss_pred CCCCccccCCCCccCcEEEECcceeCcCcC
Confidence 345688888887766555455666655554
No 143
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=47.57 E-value=1.8 Score=25.06 Aligned_cols=53 Identities=19% Similarity=0.369 Sum_probs=32.5
Q ss_pred CCcccCccccccCC---CCeec--cCCCcccHhhHHHHHhhhhhccc-cCCCCCCCCCCCCcCc
Q 041693 47 DIELTCPVCLETVF---DPVSL--TCGHILCKMCACSAASVSIVDGL-KLADPTEKCPLCRKAG 104 (156)
Q Consensus 47 ~~~l~C~IC~~~~~---~Pv~l--~CgH~fC~~Ci~~~~~~~~~~~~-~~~~~~~~CP~Cr~~~ 104 (156)
.++..|.+|..... ..+.+ .|...|-..|+..-+. .. ....+...|+.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~-----~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHID-----SSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCC-----HHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCccc-----ccccCCCCCEECCCCcCcc
Confidence 35678999997632 23333 5888888888853220 00 0125678899986543
No 144
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.45 E-value=8 Score=23.23 Aligned_cols=45 Identities=24% Similarity=0.510 Sum_probs=27.7
Q ss_pred cCccccccCCCCeec---cCCCcccHhhHHHHHhhhhhccccCCCC-CCCCCCCCc
Q 041693 51 TCPVCLETVFDPVSL---TCGHILCKMCACSAASVSIVDGLKLADP-TEKCPLCRK 102 (156)
Q Consensus 51 ~C~IC~~~~~~Pv~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~~-~~~CP~Cr~ 102 (156)
.|.+|...-..-.++ .|...|...|+..-+ . ....+ ...||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl-----~--~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPL-----D--KVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCC-----S--SCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCc-----c--CCCCCCCcCCcCccC
Confidence 677888643222233 588888888985432 1 11234 789999964
No 145
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=47.30 E-value=14 Score=21.50 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=20.1
Q ss_pred CcccCccccccCCC-CeeccCCCcccHh
Q 041693 48 IELTCPVCLETVFD-PVSLTCGHILCKM 74 (156)
Q Consensus 48 ~~l~C~IC~~~~~~-Pv~l~CgH~fC~~ 74 (156)
....|..|...+.- +..-.||.+||..
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKCKCGSTFCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTSCEECTTSCEECSS
T ss_pred cCCcChhhCCcccccCeEeecCCEeccc
Confidence 45789999986433 5666899999964
No 146
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=46.79 E-value=8.5 Score=24.78 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=20.7
Q ss_pred cccCccccccCCCCeeccCCCcccHhh
Q 041693 49 ELTCPVCLETVFDPVSLTCGHILCKMC 75 (156)
Q Consensus 49 ~l~C~IC~~~~~~Pv~l~CgH~fC~~C 75 (156)
...|..|...-..-+-|.|||.+|.+-
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCgr~ 50 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCGRY 50 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEECTT
T ss_pred CCcCccccCCCCeeeeeecCccccCCC
Confidence 567999987655556789999999643
No 147
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=46.70 E-value=13 Score=21.68 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=22.5
Q ss_pred CCcccCccccccCCCCeeccC-CCcccHhhHHHH
Q 041693 47 DIELTCPVCLETVFDPVSLTC-GHILCKMCACSA 79 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv~l~C-gH~fC~~Ci~~~ 79 (156)
.+..-|-||.+-.. =.-+.| |-.||..|....
T Consensus 6 ee~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNEDAT-LRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSCCC-EEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCCCe-EEecCCCCceehHHHHHHH
Confidence 34567999998622 112478 889999999765
No 148
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=46.49 E-value=8.5 Score=22.58 Aligned_cols=46 Identities=20% Similarity=0.418 Sum_probs=26.8
Q ss_pred cCccccccCCCCeec---cCCCcccHhhHHHHHhhhhhccccCCCC-CCCCCCCCcC
Q 041693 51 TCPVCLETVFDPVSL---TCGHILCKMCACSAASVSIVDGLKLADP-TEKCPLCRKA 103 (156)
Q Consensus 51 ~C~IC~~~~~~Pv~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~~-~~~CP~Cr~~ 103 (156)
.|.+|...-..-.++ .|...|-..|+..-+ . ....+ ...||.|+..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl-----~--~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPL-----S--SVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCC-----S--SCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCc-----C--CCCCCCCcCCcCccCc
Confidence 345666532222233 588888899985333 1 11234 7899999753
No 149
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=46.02 E-value=5.9 Score=22.49 Aligned_cols=46 Identities=15% Similarity=0.385 Sum_probs=27.3
Q ss_pred CCcccCccccccCCCCeec--c--CC-CcccHhhHHHHHhhhhhccccCCCCCCCCCCCCc
Q 041693 47 DIELTCPVCLETVFDPVSL--T--CG-HILCKMCACSAASVSIVDGLKLADPTEKCPLCRK 102 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv~l--~--Cg-H~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~ 102 (156)
.+...| ||.+......+. . |. .-|...|+. + .....+...||.|+.
T Consensus 8 ~e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvg--l-------~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--L-------TTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--C-------SSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCC--C-------CcCCCCCEECcCccC
Confidence 456777 899865443322 3 54 568888884 1 111246788998854
No 150
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=45.58 E-value=4.3 Score=19.09 Aligned_cols=12 Identities=33% Similarity=0.966 Sum_probs=9.3
Q ss_pred cccCccccccCC
Q 041693 49 ELTCPVCLETVF 60 (156)
Q Consensus 49 ~l~C~IC~~~~~ 60 (156)
...||+|++.+.
T Consensus 6 ~vqcpvcqq~mp 17 (29)
T 3vhs_A 6 QVQCPVCQQMMP 17 (29)
T ss_dssp EEECTTTCCEEE
T ss_pred eeeChHHHHhCc
Confidence 468999998754
No 151
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=44.99 E-value=13 Score=21.62 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=20.1
Q ss_pred CcccCccccccCC-CCeeccCCCcccHh
Q 041693 48 IELTCPVCLETVF-DPVSLTCGHILCKM 74 (156)
Q Consensus 48 ~~l~C~IC~~~~~-~Pv~l~CgH~fC~~ 74 (156)
....|..|...+. .+..-.||.+||..
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMCRCGTTFCGS 41 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECSSSCEECTT
T ss_pred cCCcChhhCCccCccCEEeecCCEeccc
Confidence 3478999998543 35666899999974
No 152
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.99 E-value=14 Score=21.32 Aligned_cols=27 Identities=15% Similarity=0.437 Sum_probs=20.1
Q ss_pred CcccCcc--ccccCCCCeecc-CCCcccHh
Q 041693 48 IELTCPV--CLETVFDPVSLT-CGHILCKM 74 (156)
Q Consensus 48 ~~l~C~I--C~~~~~~Pv~l~-CgH~fC~~ 74 (156)
....|.. |.+.-.-|+.-. |+..||..
T Consensus 11 ~~~~Cs~~~Ck~~~ll~f~C~~C~~~FC~~ 40 (63)
T 1x4v_A 11 FTNKCERAGCRQREMMKLTCERCSRNFCIK 40 (63)
T ss_dssp TCCCCCSTTCCCCCSSCCBCSSSCCBCCHH
T ss_pred cCCCCCccCCCCCCccceECCCCCcccCcc
Confidence 3568988 998755677665 99999853
No 153
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=44.89 E-value=2.4 Score=20.51 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=13.0
Q ss_pred cccCccccccCCCCeec
Q 041693 49 ELTCPVCLETVFDPVSL 65 (156)
Q Consensus 49 ~l~C~IC~~~~~~Pv~l 65 (156)
.+.||+|...+.++.++
T Consensus 3 k~~CpvCk~q~Pd~kt~ 19 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDTL 19 (28)
T ss_dssp CEECTTSSCEESSHHHH
T ss_pred cccCccccccCcChHHH
Confidence 47899999887776543
No 154
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=44.61 E-value=35 Score=21.43 Aligned_cols=13 Identities=31% Similarity=0.754 Sum_probs=10.2
Q ss_pred CCCCCCCCcCccc
Q 041693 94 TEKCPLCRKAGVY 106 (156)
Q Consensus 94 ~~~CP~Cr~~~~~ 106 (156)
+..||+|+.++..
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 5579999998753
No 155
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=44.37 E-value=11 Score=32.65 Aligned_cols=57 Identities=19% Similarity=0.382 Sum_probs=38.2
Q ss_pred CCcccCccccccCCCCe----------eccCCCcc--------------------cHhhHHHHHhhhhhccccCCCCCCC
Q 041693 47 DIELTCPVCLETVFDPV----------SLTCGHIL--------------------CKMCACSAASVSIVDGLKLADPTEK 96 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv----------~l~CgH~f--------------------C~~Ci~~~~~~~~~~~~~~~~~~~~ 96 (156)
.|--+|+-|+.-+.+|. .+.||..| |..|...|-++..+ +-.-....
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~R---RfhAqp~a 185 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDR---RFHAQPVA 185 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTST---TTTCTTCC
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccc---cccCCCCc
Confidence 45679999998777663 24577544 99999999643211 11233568
Q ss_pred CCCCCcCccc
Q 041693 97 CPLCRKAGVY 106 (156)
Q Consensus 97 CP~Cr~~~~~ 106 (156)
||.|.-.+..
T Consensus 186 C~~CGP~l~l 195 (761)
T 3vth_A 186 CFDCGPSLSF 195 (761)
T ss_dssp CTTTSCCEEE
T ss_pred CCccCCeeEE
Confidence 9999887654
No 156
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.15 E-value=2.6 Score=26.28 Aligned_cols=51 Identities=20% Similarity=0.363 Sum_probs=29.9
Q ss_pred CCCcccCccccccCCC-Ceec--cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcC
Q 041693 46 LDIELTCPVCLETVFD-PVSL--TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKA 103 (156)
Q Consensus 46 ~~~~l~C~IC~~~~~~-Pv~l--~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 103 (156)
..+...|.||...-.. .+++ .|...|...|+..-+ .........||.|...
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl-------~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPL-------PEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCC-------SSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCc-------ccCCCCCcCCccCcCc
Confidence 3456789999875422 2222 577777777774322 1112456889988653
No 157
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=43.66 E-value=16 Score=21.84 Aligned_cols=26 Identities=23% Similarity=0.742 Sum_probs=19.2
Q ss_pred cccCccccccC-CCCeeccCCCcccHh
Q 041693 49 ELTCPVCLETV-FDPVSLTCGHILCKM 74 (156)
Q Consensus 49 ~l~C~IC~~~~-~~Pv~l~CgH~fC~~ 74 (156)
...|..|...+ ..+..-.||.+||..
T Consensus 25 ~nRC~~CrKkvgL~gf~CrCg~~FCs~ 51 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCRCGNLFCGL 51 (74)
T ss_dssp TTBCSSSCCBCGGGCEECTTSCEECSS
T ss_pred CCcChhhCCcccccCeecCCCCEechh
Confidence 46899998853 335666799999964
No 158
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=43.01 E-value=15 Score=23.81 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=10.4
Q ss_pred cccCccccccCCCC
Q 041693 49 ELTCPVCLETVFDP 62 (156)
Q Consensus 49 ~l~C~IC~~~~~~P 62 (156)
...|..|.+.+...
T Consensus 61 ~~~C~~C~~~I~~~ 74 (123)
T 2l4z_A 61 WKRCAGCGGKIADR 74 (123)
T ss_dssp CSBBSSSSSBCCSS
T ss_pred CCcCcCCCCCcCCc
Confidence 45788888877665
No 159
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=42.95 E-value=31 Score=20.59 Aligned_cols=27 Identities=22% Similarity=0.496 Sum_probs=19.9
Q ss_pred CcccCccccccCC-CCeeccCCCcccHh
Q 041693 48 IELTCPVCLETVF-DPVSLTCGHILCKM 74 (156)
Q Consensus 48 ~~l~C~IC~~~~~-~Pv~l~CgH~fC~~ 74 (156)
....|..|...+. .+..-.||.+||..
T Consensus 24 ~~~RC~~C~kkvgL~~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKCRCGSTFCGT 51 (74)
T ss_dssp CCCBCSSSCCBCTTTCEECTTSCEECTT
T ss_pred cCccchhhcCcccccceEeccCCEeccc
Confidence 3578999997543 35666899999964
No 160
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=42.56 E-value=11 Score=24.00 Aligned_cols=48 Identities=27% Similarity=0.416 Sum_probs=28.6
Q ss_pred CCcccCccccccCCC-Cee--ccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCC
Q 041693 47 DIELTCPVCLETVFD-PVS--LTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCR 101 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~-Pv~--l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr 101 (156)
.++..|.+|.+.-.. ..+ -.|+..|...|+.... .........||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~-------~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV-------TPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC-------CTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc-------ccccccCccCCcCC
Confidence 356789999875432 222 2688889999985432 01123456677654
No 161
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=42.41 E-value=7.5 Score=23.37 Aligned_cols=45 Identities=20% Similarity=0.431 Sum_probs=24.9
Q ss_pred cCccccccCCCCeec---cCCCcccHhhHHHHHhhhhhccccCCCCC-CCCCCCCc
Q 041693 51 TCPVCLETVFDPVSL---TCGHILCKMCACSAASVSIVDGLKLADPT-EKCPLCRK 102 (156)
Q Consensus 51 ~C~IC~~~~~~Pv~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~-~~CP~Cr~ 102 (156)
.|.+|...-..-.++ .|...|...|+..-+ . ....+. ..||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL-----~--~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPL-----S--SVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCC-----S--SCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcc-----c--CCCCCCceECcCccc
Confidence 345555433222233 588888888885433 1 112334 89999975
No 162
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=42.28 E-value=31 Score=21.72 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=25.8
Q ss_pred CcccCccccccCCC---CeeccCCCcccHhhHHHHH
Q 041693 48 IELTCPVCLETVFD---PVSLTCGHILCKMCACSAA 80 (156)
Q Consensus 48 ~~l~C~IC~~~~~~---Pv~l~CgH~fC~~Ci~~~~ 80 (156)
+-+.|..|...+.+ +....=|..||..|..+.+
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f 64 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLG 64 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHH
T ss_pred hcCcccccCCchhcCCCeeEEECCeeechHHHHHHh
Confidence 45899999998864 4444568899999998877
No 163
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.95 E-value=36 Score=19.00 Aligned_cols=33 Identities=12% Similarity=0.254 Sum_probs=24.7
Q ss_pred CcccCccccccCCCC-eeccCCCcccHhhHHHHH
Q 041693 48 IELTCPVCLETVFDP-VSLTCGHILCKMCACSAA 80 (156)
Q Consensus 48 ~~l~C~IC~~~~~~P-v~l~CgH~fC~~Ci~~~~ 80 (156)
+-+.|..|...+... ....=|..||..|..+.+
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 30 DCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp TTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHH
T ss_pred CcCEECCCCCCCCCCccEeECCEEECHHHhHHHh
Confidence 458899999887643 334568899999998776
No 164
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.81 E-value=11 Score=21.46 Aligned_cols=32 Identities=25% Similarity=0.559 Sum_probs=18.3
Q ss_pred cccCccccccCCCC-eeccCCCcccHhhHHHHH
Q 041693 49 ELTCPVCLETVFDP-VSLTCGHILCKMCACSAA 80 (156)
Q Consensus 49 ~l~C~IC~~~~~~P-v~l~CgH~fC~~Ci~~~~ 80 (156)
-+.|..|...+..- ....=|..||..|..+.+
T Consensus 31 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 31 CFRCDLCQEVLADIGFVKNAGRHLCRPCHNREK 63 (70)
T ss_dssp TSBCSSSCCBCSSSCCEEETTEEECHHHHHHHH
T ss_pred CCEeCCCCCcCCCCccEeECCeEECHHHhhhhc
Confidence 36667776665443 222356667777766554
No 165
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=40.46 E-value=28 Score=24.12 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=30.8
Q ss_pred cccCccccccCCC-CeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCc
Q 041693 49 ELTCPVCLETVFD-PVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAG 104 (156)
Q Consensus 49 ~l~C~IC~~~~~~-Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 104 (156)
=+.|..|...+.. .....=|..||..|..+.+ ...|..|...+
T Consensus 142 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f-------------~~kc~~C~~~~ 185 (192)
T 1b8t_A 142 CFRCAKCGKSLESTTLADKDGEIYCKGCYAKNF-------------GPKGFGFGQGA 185 (192)
T ss_dssp TCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHT-------------CCCCCCCCCCC
T ss_pred cCCccccCCCCCCCcccccCCEEeCHHHHHHhc-------------CCcCCCCCCcc
Confidence 4788888887753 3344567889999997765 45688887653
No 166
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.10 E-value=31 Score=19.47 Aligned_cols=33 Identities=12% Similarity=0.264 Sum_probs=24.9
Q ss_pred CcccCccccccCCCC-eeccCCCcccHhhHHHHH
Q 041693 48 IELTCPVCLETVFDP-VSLTCGHILCKMCACSAA 80 (156)
Q Consensus 48 ~~l~C~IC~~~~~~P-v~l~CgH~fC~~Ci~~~~ 80 (156)
+=+.|..|...+... ....=|..||..|..+.+
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~ 65 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL 65 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH
T ss_pred cCCcccccCCcCCcCcCEeeCCeEECHHHHHHHH
Confidence 358899999888543 344568899999998776
No 167
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=40.08 E-value=9.3 Score=27.98 Aligned_cols=46 Identities=20% Similarity=0.418 Sum_probs=24.9
Q ss_pred cCccccccCCCCeec---cCCCcccHhhHHHHHhhhhhccccCCCC-CCCCCCCCcC
Q 041693 51 TCPVCLETVFDPVSL---TCGHILCKMCACSAASVSIVDGLKLADP-TEKCPLCRKA 103 (156)
Q Consensus 51 ~C~IC~~~~~~Pv~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~~-~~~CP~Cr~~ 103 (156)
.|.+|...-..-..+ .|...|...|+..-+ . ....+ ...||.|...
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL-----~--~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPL-----S--SVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCC-----C--SCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCc-----c--cCCCCCCCCCcCCcCc
Confidence 588887632222222 588888888886433 1 11244 7899999653
No 168
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=39.99 E-value=26 Score=20.90 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=26.2
Q ss_pred CCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCccc
Q 041693 47 DIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGVY 106 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~~ 106 (156)
...-.|..|.+.+...++..-+..|...|+ .|-.|+..+..
T Consensus 23 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF-------------------~C~~C~~~L~~ 63 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAVVKARDKYRHPECF-------------------VCADCNLNLKQ 63 (89)
T ss_dssp CSCCBCTTTCCBCCSCCEESSSCEECTTTC-------------------CCSSSCCCTTT
T ss_pred CcCCCcccCCCEecccEEEECCceECccCC-------------------EecCCCCCCCC
Confidence 345678888887776554455655555553 57777777653
No 169
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.81 E-value=8.3 Score=22.65 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=20.4
Q ss_pred CcccCccccccCCCC----eeccCCCcccHh
Q 041693 48 IELTCPVCLETVFDP----VSLTCGHILCKM 74 (156)
Q Consensus 48 ~~l~C~IC~~~~~~P----v~l~CgH~fC~~ 74 (156)
....|..|.....-+ ..-.||.+||..
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~ 44 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSCRCGYVFCML 44 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCCSSSCCCCTT
T ss_pred cCCcchhhCCeecccccCceEecCCCEehhc
Confidence 356899999987655 344799999964
No 170
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=39.52 E-value=11 Score=20.27 Aligned_cols=13 Identities=38% Similarity=0.774 Sum_probs=10.5
Q ss_pred CCCCcccCccccc
Q 041693 45 RLDIELTCPVCLE 57 (156)
Q Consensus 45 ~~~~~l~C~IC~~ 57 (156)
.+.+++.||+|..
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 4567899999985
No 171
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.21 E-value=12 Score=22.56 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=14.1
Q ss_pred ccCccccccCCCCeeccCCCcccHhh
Q 041693 50 LTCPVCLETVFDPVSLTCGHILCKMC 75 (156)
Q Consensus 50 l~C~IC~~~~~~Pv~l~CgH~fC~~C 75 (156)
-.|..|.+.+...++..-+..|...|
T Consensus 26 ~~C~~C~~~I~~~~v~a~~~~~H~~C 51 (90)
T 2dar_A 26 PMCAHCNQVIRGPFLVALGKSWHPEE 51 (90)
T ss_dssp CBBSSSCCBCCSCEEEETTEEECTTT
T ss_pred CCCccCCCEecceEEEECCccccccC
Confidence 46777776665544444454444444
No 172
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=38.44 E-value=6 Score=22.87 Aligned_cols=49 Identities=20% Similarity=0.397 Sum_probs=30.3
Q ss_pred CCcccCccccccCCCCeec--cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCc
Q 041693 47 DIELTCPVCLETVFDPVSL--TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAG 104 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv~l--~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 104 (156)
..+..|.||.+.- -+++ .|...|...|+..-+ .....+...||.|...-
T Consensus 6 ~~~~~C~vC~~~g--~ll~CD~C~~~fH~~Cl~ppl-------~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 6 KNEDECAVCRDGG--ELICCDGCPRAFHLACLSPPL-------REIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SCCCSBSSSSCCS--SCEECSSCCCEECTTTSSSCC-------SSCCSSCCCCHHHHHTC
T ss_pred CCCCCCccCCCCC--CEEEcCCCChhhcccccCCCc-------CcCCCCCeECccccCcc
Confidence 3567899998742 2222 587788888885322 11124578899997643
No 173
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.30 E-value=22 Score=20.46 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=19.3
Q ss_pred cccCccccccCC--CCeeccCCCcccHhhHHHH
Q 041693 49 ELTCPVCLETVF--DPVSLTCGHILCKMCACSA 79 (156)
Q Consensus 49 ~l~C~IC~~~~~--~Pv~l~CgH~fC~~Ci~~~ 79 (156)
-+.|..|...|. ......=|..||..|....
T Consensus 31 CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 31 CALCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63 (73)
T ss_dssp TSCCSSSCCCCCSSCCCEEETTEEECTTHHHHT
T ss_pred cCEeCCCCCCCCCCCeeEeeCCEEEChHHChHh
Confidence 467777777665 2333345667777777554
No 174
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=38.25 E-value=21 Score=23.02 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=9.5
Q ss_pred CCCC-CCCCCCcCc
Q 041693 92 DPTE-KCPLCRKAG 104 (156)
Q Consensus 92 ~~~~-~CP~Cr~~~ 104 (156)
.... .||.|..+.
T Consensus 87 ~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 87 ALDYGVCEKCHSKN 100 (119)
T ss_dssp CSTTCCCSSSSSCC
T ss_pred CCCCCcCccccCCC
Confidence 3456 899998873
No 175
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=38.06 E-value=14 Score=22.73 Aligned_cols=27 Identities=19% Similarity=0.499 Sum_probs=21.1
Q ss_pred CcccCcc--ccccCCCCeecc-CCCcccHh
Q 041693 48 IELTCPV--CLETVFDPVSLT-CGHILCKM 74 (156)
Q Consensus 48 ~~l~C~I--C~~~~~~Pv~l~-CgH~fC~~ 74 (156)
....|.. |...-.-|+.-. |+.+||..
T Consensus 24 ~~~~C~~~~Ck~~~~l~f~C~~C~~~FC~~ 53 (86)
T 1wfe_A 24 KSYSCSFKGCTDVELVAVICPYCEKNFCLR 53 (86)
T ss_dssp CCEECCSTTCCCEESSCEECTTTCCEECGG
T ss_pred CCCCCCCcCCCCCCccceECCCCCcccccc
Confidence 4568998 998766787766 99999863
No 176
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.93 E-value=24 Score=19.92 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=15.2
Q ss_pred ccCccccccCCC-CeeccCCCcccHhhHHHH
Q 041693 50 LTCPVCLETVFD-PVSLTCGHILCKMCACSA 79 (156)
Q Consensus 50 l~C~IC~~~~~~-Pv~l~CgH~fC~~Ci~~~ 79 (156)
+.|..|...+.. +....=|..||..|..+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1wyh_A 34 FLCSGCEQPLGSRSFVPDKGAHYCVPCYENK 64 (72)
T ss_dssp CBCTTTCCBTTTSCEEEETTEEEEHHHHHHH
T ss_pred CeECCCCCcCCCCccCCcCCeEECHHHHHHH
Confidence 556666655543 222334555666665444
No 177
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=37.11 E-value=8.4 Score=19.34 Aligned_cols=15 Identities=27% Similarity=0.842 Sum_probs=11.7
Q ss_pred ccCCCcccHhhHHHH
Q 041693 65 LTCGHILCKMCACSA 79 (156)
Q Consensus 65 l~CgH~fC~~Ci~~~ 79 (156)
.+|.|+.|..|-...
T Consensus 10 ascehtmcgycqgpl 24 (40)
T 1erd_A 10 ASCEHTMCGYCQGPL 24 (40)
T ss_dssp HHTCGGGGGGSCHHH
T ss_pred HhccccccccccCCe
Confidence 369999999986544
No 178
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=36.01 E-value=15 Score=20.27 Aligned_cols=14 Identities=36% Similarity=0.684 Sum_probs=11.3
Q ss_pred cCCCCcccCccccc
Q 041693 44 IRLDIELTCPVCLE 57 (156)
Q Consensus 44 ~~~~~~l~C~IC~~ 57 (156)
..+.+++.||+|..
T Consensus 31 ~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 31 EDLPDDWACPVCGA 44 (52)
T ss_dssp TSSCTTCCCSSSCC
T ss_pred HHCCCCCcCCCCCC
Confidence 45678899999985
No 179
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=35.34 E-value=13 Score=21.63 Aligned_cols=47 Identities=19% Similarity=0.367 Sum_probs=28.0
Q ss_pred CCcccCccccccCCCCeec---cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCc
Q 041693 47 DIELTCPVCLETVFDPVSL---TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRK 102 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~ 102 (156)
.+.+.| ||......-..+ .|..=|-..|+.-. . ......+.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~-------~-~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIR-------K-SNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCC-------T-TSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcC-------c-ccCCCcEECCCCCC
Confidence 456788 998876554444 36666666776311 0 11235788988864
No 180
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=35.01 E-value=15 Score=20.57 Aligned_cols=14 Identities=21% Similarity=0.572 Sum_probs=11.3
Q ss_pred cCCCCcccCccccc
Q 041693 44 IRLDIELTCPVCLE 57 (156)
Q Consensus 44 ~~~~~~l~C~IC~~ 57 (156)
..+.+++.||+|..
T Consensus 31 e~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 31 KDIPDDWVCPLCGV 44 (54)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hHCCCCCcCcCCCC
Confidence 45678899999985
No 181
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.87 E-value=21 Score=20.97 Aligned_cols=28 Identities=18% Similarity=0.432 Sum_probs=13.0
Q ss_pred ccCccccccCCCCeeccCCCcccHhhHH
Q 041693 50 LTCPVCLETVFDPVSLTCGHILCKMCAC 77 (156)
Q Consensus 50 l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~ 77 (156)
+.|..|...+..-....=|..||..|..
T Consensus 42 F~C~~C~~~L~~~~f~~~g~~yC~~cy~ 69 (79)
T 2cor_A 42 FNCANCGKELTADARELKGELYCLPCHD 69 (79)
T ss_dssp SBCSSSCCBCCTTCEEETTEEECHHHHH
T ss_pred CEeCCCCCccCCCCEeECCEEeCHHHHH
Confidence 5555555544332222234455555553
No 182
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.82 E-value=25 Score=19.81 Aligned_cols=32 Identities=16% Similarity=0.424 Sum_probs=18.6
Q ss_pred cccCccccccCCC-CeeccCCCcccHhhHHHHH
Q 041693 49 ELTCPVCLETVFD-PVSLTCGHILCKMCACSAA 80 (156)
Q Consensus 49 ~l~C~IC~~~~~~-Pv~l~CgH~fC~~Ci~~~~ 80 (156)
-+.|..|...+.. +....=+..||..|..+.+
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 31 CFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp TSBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CCccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 4667777766643 2223446677777775554
No 183
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=34.77 E-value=8.3 Score=23.70 Aligned_cols=54 Identities=15% Similarity=0.353 Sum_probs=33.3
Q ss_pred CcccCccccccCC---CCeec--cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCc
Q 041693 48 IELTCPVCLETVF---DPVSL--TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAG 104 (156)
Q Consensus 48 ~~l~C~IC~~~~~---~Pv~l--~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 104 (156)
.+..|.+|...-. +.+.+ .|...|...|+..-+... ......+.+.|+.|....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~---~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDK---EVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHH---HHHCTTCCCCCHHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCccccc---ccCCCCCCeeCccccchh
Confidence 4678999998643 34444 588888888885433100 001235678999997654
No 184
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.22 E-value=26 Score=20.62 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=19.8
Q ss_pred cccCccccccCCCCeeccCCCcccHhhHHHHH
Q 041693 49 ELTCPVCLETVFDPVSLTCGHILCKMCACSAA 80 (156)
Q Consensus 49 ~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~ 80 (156)
-+.|..|...|..-....=|..||..|..+.+
T Consensus 42 CF~C~~C~~~L~~~~~~~~g~~yC~~~y~~~f 73 (80)
T 2dj7_A 42 CFKCQTCSVILTGEYISKDGVPYCESDYHAQF 73 (80)
T ss_dssp TCBCSSSCCBCSSCCEEETTEEECTTHHHHHT
T ss_pred cCCcCcCCCCcCCCeEEECCEEECHHHHHHHc
Confidence 46777777766543333346677777776554
No 185
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.05 E-value=41 Score=19.48 Aligned_cols=33 Identities=18% Similarity=0.406 Sum_probs=24.9
Q ss_pred CcccCccccccCC--CCeec-cCCCcccHhhHHHHH
Q 041693 48 IELTCPVCLETVF--DPVSL-TCGHILCKMCACSAA 80 (156)
Q Consensus 48 ~~l~C~IC~~~~~--~Pv~l-~CgH~fC~~Ci~~~~ 80 (156)
+-+.|..|...+. ....+ .=|..||..|..+.+
T Consensus 40 ~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~ 75 (81)
T 1x6a_A 40 ECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVV 75 (81)
T ss_dssp TSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHH
T ss_pred ccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHh
Confidence 4588999998885 34443 567889999998776
No 186
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=33.93 E-value=22 Score=19.86 Aligned_cols=15 Identities=33% Similarity=0.642 Sum_probs=11.5
Q ss_pred CCCCcccCccccccC
Q 041693 45 RLDIELTCPVCLETV 59 (156)
Q Consensus 45 ~~~~~l~C~IC~~~~ 59 (156)
.+-+-+.||+|...+
T Consensus 6 ~lL~iL~CP~c~~~L 20 (56)
T 2kpi_A 6 GLLEILACPACHAPL 20 (56)
T ss_dssp SCTTSCCCSSSCSCE
T ss_pred HHHhheeCCCCCCcc
Confidence 456678999999854
No 187
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=33.63 E-value=8.9 Score=27.23 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=21.3
Q ss_pred CCcccCccccccCCCCeeccCCCcccHhhH
Q 041693 47 DIELTCPVCLETVFDPVSLTCGHILCKMCA 76 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci 76 (156)
.....|++|.+.+.++ |-.+|..|.
T Consensus 161 ~~~~~C~~CGE~~~~~-----g~~~C~~C~ 185 (191)
T 3d00_A 161 GKIVLCPQCREAYPAQ-----DGELCLSCQ 185 (191)
T ss_dssp CCEEECTTTCCEEEGG-----GCSSCHHHH
T ss_pred cCCEECCcCCCChhhC-----CCcCCcccc
Confidence 4678899999987766 999999997
No 188
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=33.22 E-value=17 Score=20.30 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=12.8
Q ss_pred ccCccccccCCC-CeeccCCCcccHhhHHH
Q 041693 50 LTCPVCLETVFD-PVSLTCGHILCKMCACS 78 (156)
Q Consensus 50 l~C~IC~~~~~~-Pv~l~CgH~fC~~Ci~~ 78 (156)
+.|..|...+.. .....=|..||..|..+
T Consensus 32 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 61 (66)
T 1nyp_A 32 FVCAKCEKPFLGHRHYERKGLAYCETHYNQ 61 (66)
T ss_dssp CBCTTTCCBCSSSCCEEETTEEECHHHHHH
T ss_pred CEECCCCCCCCCCceEeECCcEECHHHHHH
Confidence 455555554432 12223344555555543
No 189
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=33.09 E-value=28 Score=20.63 Aligned_cols=31 Identities=26% Similarity=0.576 Sum_probs=23.0
Q ss_pred CcccCccccccC-CCCe--eccCCCcccHhhHHH
Q 041693 48 IELTCPVCLETV-FDPV--SLTCGHILCKMCACS 78 (156)
Q Consensus 48 ~~l~C~IC~~~~-~~Pv--~l~CgH~fC~~Ci~~ 78 (156)
.++.|.+|...- ..++ -+.|.-+||..|+..
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 468899998643 3333 357999999999975
No 190
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=32.28 E-value=17 Score=20.02 Aligned_cols=14 Identities=29% Similarity=0.631 Sum_probs=11.3
Q ss_pred cCCCCcccCccccc
Q 041693 44 IRLDIELTCPVCLE 57 (156)
Q Consensus 44 ~~~~~~l~C~IC~~ 57 (156)
..+.+++.||+|..
T Consensus 30 ~~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 30 EDLPDDWVCPLCGA 43 (52)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hHCCCCCcCCCCCC
Confidence 35678899999985
No 191
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=32.15 E-value=22 Score=22.17 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=18.5
Q ss_pred cccCccccccCCC-Ceecc--CCCcccHh
Q 041693 49 ELTCPVCLETVFD-PVSLT--CGHILCKM 74 (156)
Q Consensus 49 ~l~C~IC~~~~~~-Pv~l~--CgH~fC~~ 74 (156)
...|..|...-.+ -+-|. |||.+|.+
T Consensus 25 ~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 25 LGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 4689999954333 35577 99999965
No 192
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.11 E-value=52 Score=19.59 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=22.5
Q ss_pred cccCccccccCCCC-eeccCCCcccHhhHHHHH
Q 041693 49 ELTCPVCLETVFDP-VSLTCGHILCKMCACSAA 80 (156)
Q Consensus 49 ~l~C~IC~~~~~~P-v~l~CgH~fC~~Ci~~~~ 80 (156)
=+.|..|...+..- ....=|..||..|..+.+
T Consensus 42 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f 74 (91)
T 2d8y_A 42 CFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLF 74 (91)
T ss_dssp TCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHS
T ss_pred CCeeCCCCCCCCCCCcEeECCEEECHHHHHHHh
Confidence 47888888877543 334457789999987665
No 193
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.93 E-value=24 Score=20.61 Aligned_cols=10 Identities=20% Similarity=0.424 Sum_probs=5.0
Q ss_pred cCccccccCC
Q 041693 51 TCPVCLETVF 60 (156)
Q Consensus 51 ~C~IC~~~~~ 60 (156)
.|..|.+.+.
T Consensus 17 ~C~~C~~~I~ 26 (81)
T 1v6g_A 17 RCFSCDQFIE 26 (81)
T ss_dssp BCTTTCCBCC
T ss_pred cCccccCEec
Confidence 4555555444
No 194
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.78 E-value=53 Score=18.87 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=24.1
Q ss_pred CcccCccccccCCC-CeeccCCCcccHhhHHHHH
Q 041693 48 IELTCPVCLETVFD-PVSLTCGHILCKMCACSAA 80 (156)
Q Consensus 48 ~~l~C~IC~~~~~~-Pv~l~CgH~fC~~Ci~~~~ 80 (156)
+=+.|..|...+.. .....=|..||..|..+.+
T Consensus 40 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f 73 (80)
T 1x3h_A 40 ECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRR 73 (80)
T ss_dssp TTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHH
T ss_pred CcCChhhCCCCCCCCcEEeECCEEECHHHHHHHc
Confidence 45889999988765 3334567889999987765
No 195
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=31.64 E-value=18 Score=20.24 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=11.2
Q ss_pred cCCCCcccCccccc
Q 041693 44 IRLDIELTCPVCLE 57 (156)
Q Consensus 44 ~~~~~~l~C~IC~~ 57 (156)
..+.+++.||+|..
T Consensus 31 ~~lP~dw~CP~Cga 44 (55)
T 2v3b_B 31 EDIPADWVCPDCGV 44 (55)
T ss_dssp GGSCTTCCCTTTCC
T ss_pred hHCCCCCcCCCCCC
Confidence 35678899999985
No 196
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.23 E-value=27 Score=19.80 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=17.3
Q ss_pred cccCccccccCCCCe-eccCCCcccHhhHHHH
Q 041693 49 ELTCPVCLETVFDPV-SLTCGHILCKMCACSA 79 (156)
Q Consensus 49 ~l~C~IC~~~~~~Pv-~l~CgH~fC~~Ci~~~ 79 (156)
=+.|..|...+.... ...=|..||..|..+.
T Consensus 35 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 66 (72)
T 1x4l_A 35 CFNCKKCSLSLVGRGFLTERDDILCPDCGKDI 66 (72)
T ss_dssp TCBCSSSCCBCTTSCCEECSSSEECHHHHHTC
T ss_pred cCEeccCCCcCCCCccEeECCEEEChhHcCcc
Confidence 366777766654322 2245666777776443
No 197
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=29.76 E-value=27 Score=20.41 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=11.5
Q ss_pred CCCCcccCccccccC
Q 041693 45 RLDIELTCPVCLETV 59 (156)
Q Consensus 45 ~~~~~l~C~IC~~~~ 59 (156)
.+-+-+.||+|...+
T Consensus 4 ~LL~iL~CP~ck~~L 18 (68)
T 2jr6_A 4 KFLDILVCPVTKGRL 18 (68)
T ss_dssp SSSCCCBCSSSCCBC
T ss_pred HHhhheECCCCCCcC
Confidence 456678999999754
No 198
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=29.43 E-value=43 Score=21.34 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=26.3
Q ss_pred CcccCccccccCC--CCeeccCCCcccHhhHHHHHhh
Q 041693 48 IELTCPVCLETVF--DPVSLTCGHILCKMCACSAASV 82 (156)
Q Consensus 48 ~~l~C~IC~~~~~--~Pv~l~CgH~fC~~Ci~~~~~~ 82 (156)
+=+.|..|...|. +.....=|..||..|..+.+..
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~ 71 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKI 71 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHH
T ss_pred ccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhcc
Confidence 4588999999883 3345556889999999887643
No 199
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.37 E-value=38 Score=19.67 Aligned_cols=30 Identities=17% Similarity=0.371 Sum_probs=12.4
Q ss_pred ccCccccccCCCC-eeccCCCcccHhhHHHH
Q 041693 50 LTCPVCLETVFDP-VSLTCGHILCKMCACSA 79 (156)
Q Consensus 50 l~C~IC~~~~~~P-v~l~CgH~fC~~Ci~~~ 79 (156)
+.|..|...+..- ....=|..||..|..+.
T Consensus 44 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 74 (82)
T 1x63_A 44 FTCSNCKQVIGTGSFFPKGEDFYCVTCHETK 74 (82)
T ss_dssp CCCSSSCCCCTTSCEEEETTEEEEHHHHHHH
T ss_pred CchhhCCCccCCCccEeeCCEEECHHHHHHH
Confidence 4444454444321 12223444555554433
No 200
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=29.35 E-value=64 Score=16.60 Aligned_cols=43 Identities=12% Similarity=0.202 Sum_probs=24.2
Q ss_pred CCcccCccccccCCCCeeccCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCcc
Q 041693 47 DIELTCPVCLETVFDPVSLTCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAGV 105 (156)
Q Consensus 47 ~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~~ 105 (156)
...+.|++|...|... .-|...+ .........+.|+.|...+.
T Consensus 10 ~k~~~C~~C~k~f~~~-----------~~L~~H~-----~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 10 GKPYICQSCGKGFSRP-----------DHLNGHI-----KQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp SCCEECSSSCCEESSH-----------HHHHHHH-----HHTSCCCCCCCSSSSCCSSC
T ss_pred CCCeECCCCCcccCCH-----------HHHHHHH-----HHhcCCCCCccCCCCCCCCC
Confidence 3457888887766543 2233332 00112245689999988764
No 201
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.27 E-value=27 Score=20.10 Aligned_cols=28 Identities=18% Similarity=0.500 Sum_probs=15.7
Q ss_pred cccCccccccCCCC-eeccCCCcccHhhH
Q 041693 49 ELTCPVCLETVFDP-VSLTCGHILCKMCA 76 (156)
Q Consensus 49 ~l~C~IC~~~~~~P-v~l~CgH~fC~~Ci 76 (156)
=+.|..|...+... ....=|..||..|.
T Consensus 35 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy 63 (76)
T 1x68_A 35 CFNCGKCSVSLVGKGFLTQNKEIFCQKCG 63 (76)
T ss_dssp GCBCTTTCCBCSSSCEEEETTEEEETTTT
T ss_pred cCChhhCCCcCCCCceEeECCEEECHHHh
Confidence 36677776665432 22345566676665
No 202
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=29.12 E-value=21 Score=21.70 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=11.3
Q ss_pred cCCCCcccCccccc
Q 041693 44 IRLDIELTCPVCLE 57 (156)
Q Consensus 44 ~~~~~~l~C~IC~~ 57 (156)
..+.+++.||+|..
T Consensus 55 edlPddW~CPvCga 68 (81)
T 2kn9_A 55 DDIPDDWSCPDCGA 68 (81)
T ss_dssp TTSCTTCCCTTTCC
T ss_pred hHCCCCCcCCCCCC
Confidence 35677899999985
No 203
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=28.96 E-value=27 Score=19.97 Aligned_cols=12 Identities=33% Similarity=0.634 Sum_probs=9.7
Q ss_pred CCcccCcccccc
Q 041693 47 DIELTCPVCLET 58 (156)
Q Consensus 47 ~~~l~C~IC~~~ 58 (156)
.+.-+|.||+..
T Consensus 7 ~d~~~C~iC~KT 18 (62)
T 2a20_A 7 GDAPTCGICHKT 18 (62)
T ss_dssp SCCCCCSSSSCS
T ss_pred CCcchhhhhccc
Confidence 467799999984
No 204
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=28.88 E-value=48 Score=18.91 Aligned_cols=32 Identities=22% Similarity=0.568 Sum_probs=23.9
Q ss_pred CcccCccccccCCCCeec----cCCCcccHh-hHHHH
Q 041693 48 IELTCPVCLETVFDPVSL----TCGHILCKM-CACSA 79 (156)
Q Consensus 48 ~~l~C~IC~~~~~~Pv~l----~CgH~fC~~-Ci~~~ 79 (156)
-...|.-|..++..-.+. -.-|.||.. ||..+
T Consensus 19 ~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 19 AKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred cccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 468999999998654332 477889765 99776
No 205
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=28.82 E-value=21 Score=21.03 Aligned_cols=14 Identities=29% Similarity=0.804 Sum_probs=11.3
Q ss_pred cCCCCcccCccccc
Q 041693 44 IRLDIELTCPVCLE 57 (156)
Q Consensus 44 ~~~~~~l~C~IC~~ 57 (156)
..+.+++.||+|..
T Consensus 35 ~~lPddw~CP~Cga 48 (70)
T 1dx8_A 35 VDLSDSFMCPACRS 48 (70)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hhCCCCCcCCCCCC
Confidence 35678899999986
No 206
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.64 E-value=24 Score=20.30 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=13.2
Q ss_pred ccCccccccCCCC-eeccCCCcccH-hhHHHH
Q 041693 50 LTCPVCLETVFDP-VSLTCGHILCK-MCACSA 79 (156)
Q Consensus 50 l~C~IC~~~~~~P-v~l~CgH~fC~-~Ci~~~ 79 (156)
+.|..|...+..- ....=+..||. .|..+.
T Consensus 37 F~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~ 68 (76)
T 2cu8_A 37 LKCERCSKTLTPGGHAEHDGKPFCHKPCYATL 68 (76)
T ss_dssp CBCSSSCCBCCTTSCEEETTEEECTTTHHHHH
T ss_pred CCCCCCCCccCCCceEeECCEEecchHHHHHh
Confidence 4555555544321 22223445555 455433
No 207
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.21 E-value=36 Score=19.12 Aligned_cols=30 Identities=13% Similarity=0.291 Sum_probs=15.1
Q ss_pred ccCccccccCCCC-eeccCCCcccHhhHHHH
Q 041693 50 LTCPVCLETVFDP-VSLTCGHILCKMCACSA 79 (156)
Q Consensus 50 l~C~IC~~~~~~P-v~l~CgH~fC~~Ci~~~ 79 (156)
+.|..|...+..- ....=|..||..|..+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1x4k_A 34 FICHRCQQPIGTKSFIPKDNQNFCVPCYEKQ 64 (72)
T ss_dssp TCCSSSCCCCCSSSEEEETTEEEEHHHHHHH
T ss_pred CcccccCCccCCCccCccCCeEECHHHHhHH
Confidence 5566666555432 22233555666666544
No 208
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.96 E-value=31 Score=19.77 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=20.8
Q ss_pred cccCccccccCCC-CeeccCCCcccHhhHHHHH
Q 041693 49 ELTCPVCLETVFD-PVSLTCGHILCKMCACSAA 80 (156)
Q Consensus 49 ~l~C~IC~~~~~~-Pv~l~CgH~fC~~Ci~~~~ 80 (156)
=+.|..|...+.. +....=|..||..|..+.+
T Consensus 39 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f 71 (77)
T 1g47_A 39 CFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71 (77)
T ss_dssp TCCCTTTCCCCGGGCSEEETTEEECHHHHHHHC
T ss_pred cCeECCCCCCCCCCCeEeECCeEeCHHHHHHHh
Confidence 4778888777654 3333456778888876554
No 209
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.54 E-value=58 Score=18.69 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=24.3
Q ss_pred CcccCccccccCCC-CeeccCCCcccHhhHHHHH
Q 041693 48 IELTCPVCLETVFD-PVSLTCGHILCKMCACSAA 80 (156)
Q Consensus 48 ~~l~C~IC~~~~~~-Pv~l~CgH~fC~~Ci~~~~ 80 (156)
+=+.|..|...+.. .....=|..||..|..+.+
T Consensus 40 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 73 (80)
T 2cuq_A 40 ECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELF 73 (80)
T ss_dssp TTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHT
T ss_pred hhCCcccCCCcCCCCeeEeECCEEECHHHHHHHc
Confidence 34789999988753 3444567889999997765
No 210
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=26.80 E-value=29 Score=23.50 Aligned_cols=12 Identities=25% Similarity=0.495 Sum_probs=9.0
Q ss_pred CCCCCCCcCccc
Q 041693 95 EKCPLCRKAGVY 106 (156)
Q Consensus 95 ~~CP~Cr~~~~~ 106 (156)
..||.|+.++..
T Consensus 149 ~~Cp~CG~~~~~ 160 (165)
T 2lcq_A 149 GVCPDCGSKVKL 160 (165)
T ss_dssp GBCTTTCCBEEE
T ss_pred CcCCCCCCccee
Confidence 479999987643
No 211
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=26.76 E-value=34 Score=20.40 Aligned_cols=25 Identities=32% Similarity=0.720 Sum_probs=20.2
Q ss_pred cccCcc--ccccCCCCeecc-CCCcccH
Q 041693 49 ELTCPV--CLETVFDPVSLT-CGHILCK 73 (156)
Q Consensus 49 ~l~C~I--C~~~~~~Pv~l~-CgH~fC~ 73 (156)
.-.|.. |.+.-.-|..-. |+.+||.
T Consensus 14 g~~Cs~~~C~~~dflpf~C~~C~~~FC~ 41 (75)
T 1wys_A 14 GQHCQVQHCRQRDFLPFVCDGCSGIFCL 41 (75)
T ss_dssp CCCCSCTTTCCCSCCCEECTTTCCEECS
T ss_pred CCCcCcccCCCccceeeECcccCcCcCc
Confidence 458887 998866788876 9999986
No 212
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.23 E-value=25 Score=20.52 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=15.4
Q ss_pred cccCccccccCCCCee-cc-CCCcccHhhHHHH
Q 041693 49 ELTCPVCLETVFDPVS-LT-CGHILCKMCACSA 79 (156)
Q Consensus 49 ~l~C~IC~~~~~~Pv~-l~-CgH~fC~~Ci~~~ 79 (156)
-+.|..|...+..... .. =|..||..|..+.
T Consensus 41 CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~ 73 (81)
T 2dlo_A 41 CFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRK 73 (81)
T ss_dssp TCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHH
T ss_pred hcCcccCCCccCCCeeEECCCCEEECHHHHHHH
Confidence 3566666655543222 11 3455666666544
No 213
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.77 E-value=42 Score=20.13 Aligned_cols=30 Identities=27% Similarity=0.687 Sum_probs=21.4
Q ss_pred CCcccCccccccCC----CC-eeccCCCcccHhhH
Q 041693 47 DIELTCPVCLETVF----DP-VSLTCGHILCKMCA 76 (156)
Q Consensus 47 ~~~l~C~IC~~~~~----~P-v~l~CgH~fC~~Ci 76 (156)
..+-.|..|...|- .. +--.|.|..|..|-
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 34678999998762 22 22369999999996
No 214
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=25.25 E-value=27 Score=19.27 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=18.9
Q ss_pred cCCCCcccCccccccCCCCeeccCCCcccHhhH
Q 041693 44 IRLDIELTCPVCLETVFDPVSLTCGHILCKMCA 76 (156)
Q Consensus 44 ~~~~~~l~C~IC~~~~~~Pv~l~CgH~fC~~Ci 76 (156)
....|...|+-|.+ +..| .+.||..|.
T Consensus 6 ~~~eD~WkC~~C~k-~N~P-----l~ryC~rCw 32 (53)
T 2cr8_A 6 SGSEDEWQCTECKK-FNSP-----SKRYCFRCW 32 (53)
T ss_dssp SCCSCCEECSSSCC-EECS-----SCCBCTTTC
T ss_pred CCCcceeecccccc-cCCC-----ccchhHHHH
Confidence 34567889999984 5555 356777786
No 215
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=24.20 E-value=39 Score=26.22 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=23.4
Q ss_pred CCCcccCccccccCCC----Cee-ccCCCcccHhhHH
Q 041693 46 LDIELTCPVCLETVFD----PVS-LTCGHILCKMCAC 77 (156)
Q Consensus 46 ~~~~l~C~IC~~~~~~----Pv~-l~CgH~fC~~Ci~ 77 (156)
......|.+|...+.. -.. -.||..+|..|..
T Consensus 354 ~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 354 FEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLG 390 (406)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGG
T ss_pred CCCCCCCccccchhceeCCCCCCCCCCcCccchhhhh
Confidence 4456789999998752 222 3699999999983
No 216
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=24.00 E-value=29 Score=21.36 Aligned_cols=14 Identities=21% Similarity=0.480 Sum_probs=11.2
Q ss_pred cCCCCcccCccccc
Q 041693 44 IRLDIELTCPVCLE 57 (156)
Q Consensus 44 ~~~~~~l~C~IC~~ 57 (156)
..+.+++.||+|..
T Consensus 63 edlPddW~CPvCga 76 (87)
T 1s24_A 63 EDIPDDWCCPDCGA 76 (87)
T ss_dssp GGCCTTCCCSSSCC
T ss_pred hHCCCCCCCCCCCC
Confidence 45678899999985
No 217
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=23.57 E-value=31 Score=20.68 Aligned_cols=12 Identities=25% Similarity=0.902 Sum_probs=8.4
Q ss_pred CCCCcccCcccc
Q 041693 45 RLDIELTCPVCL 56 (156)
Q Consensus 45 ~~~~~l~C~IC~ 56 (156)
.....+.||||.
T Consensus 13 ~~~~tWVCpICs 24 (76)
T 2j9u_B 13 DVVSTWVCPICM 24 (76)
T ss_dssp --CEEEECTTTC
T ss_pred ccccceECcccc
Confidence 445678999998
No 218
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=23.18 E-value=20 Score=19.48 Aligned_cols=15 Identities=27% Similarity=0.758 Sum_probs=11.3
Q ss_pred CCCCCCCCCCcCccc
Q 041693 92 DPTEKCPLCRKAGVY 106 (156)
Q Consensus 92 ~~~~~CP~Cr~~~~~ 106 (156)
-...+||.|.-.+-.
T Consensus 21 lP~IrCpyCGyrii~ 35 (48)
T 4ayb_P 21 LPGVRCPYCGYKIIF 35 (48)
T ss_dssp CSSSCCTTTCCSCEE
T ss_pred CCCcccCccCcEEEE
Confidence 457889999987644
No 219
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=23.01 E-value=7.1 Score=25.15 Aligned_cols=46 Identities=20% Similarity=0.399 Sum_probs=27.0
Q ss_pred cCccccccCCCCeec---cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcC
Q 041693 51 TCPVCLETVFDPVSL---TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKA 103 (156)
Q Consensus 51 ~C~IC~~~~~~Pv~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~ 103 (156)
.|.+|...-....++ .|...|-..|+..-+ .....+...||.|...
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl-------~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPV-------AEPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCC-------SSCCSSCCCCHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCc-------cCCCCCCeECccccch
Confidence 466676643333333 588888888885332 1122456889888553
No 220
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=22.83 E-value=35 Score=14.34 Aligned_cols=12 Identities=25% Similarity=0.697 Sum_probs=8.3
Q ss_pred ccCccccccCCC
Q 041693 50 LTCPVCLETVFD 61 (156)
Q Consensus 50 l~C~IC~~~~~~ 61 (156)
+.|++|...|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 568887776654
No 221
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=22.75 E-value=17 Score=22.17 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=9.7
Q ss_pred CCCCCCCCCcCcc
Q 041693 93 PTEKCPLCRKAGV 105 (156)
Q Consensus 93 ~~~~CP~Cr~~~~ 105 (156)
....||+|..++.
T Consensus 7 ~~~~~PlCG~~L~ 19 (95)
T 2k5c_A 7 HMAKCPICGSPLK 19 (95)
T ss_dssp -CEECSSSCCEEC
T ss_pred ccccCCcCCCccC
Confidence 3567999999874
No 222
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=22.73 E-value=41 Score=14.16 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=8.7
Q ss_pred ccCccccccCCCC
Q 041693 50 LTCPVCLETVFDP 62 (156)
Q Consensus 50 l~C~IC~~~~~~P 62 (156)
+.|++|...|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1klr_A 3 YQCQYCEFRSADS 15 (30)
T ss_dssp CCCSSSSCCCSCS
T ss_pred ccCCCCCCccCCH
Confidence 5677777766544
No 223
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.69 E-value=52 Score=17.86 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=11.4
Q ss_pred CCCCCCCCCCcCcc
Q 041693 92 DPTEKCPLCRKAGV 105 (156)
Q Consensus 92 ~~~~~CP~Cr~~~~ 105 (156)
.....||.|...+.
T Consensus 10 ~~~~~CPrCn~~f~ 23 (49)
T 2e72_A 10 GGRKICPRCNAQFR 23 (49)
T ss_dssp SSCCCCTTTCCCCS
T ss_pred CCceeCCccccccc
Confidence 46789999988764
No 224
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.06 E-value=25 Score=14.81 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=8.0
Q ss_pred ccCccccccCCCC
Q 041693 50 LTCPVCLETVFDP 62 (156)
Q Consensus 50 l~C~IC~~~~~~P 62 (156)
+.|+.|...|...
T Consensus 3 ~~C~~C~~~f~~~ 15 (29)
T 2m0e_A 3 HKCPHCDKKFNQV 15 (29)
T ss_dssp CCCSSCCCCCCTT
T ss_pred CcCCCCCcccCCH
Confidence 5677777665543
No 225
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=21.02 E-value=51 Score=15.01 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=10.9
Q ss_pred CCCCCCCCCCcCcc
Q 041693 92 DPTEKCPLCRKAGV 105 (156)
Q Consensus 92 ~~~~~CP~Cr~~~~ 105 (156)
...+.|+.|...+.
T Consensus 9 ~k~~~C~~C~k~f~ 22 (37)
T 1p7a_A 9 IKPFQCPDCDRSFS 22 (37)
T ss_dssp SSSBCCTTTCCCBS
T ss_pred CCCccCCCCCcccC
Confidence 44688999988774
No 226
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.50 E-value=20 Score=14.98 Aligned_cols=13 Identities=15% Similarity=0.478 Sum_probs=7.9
Q ss_pred ccCccccccCCCC
Q 041693 50 LTCPVCLETVFDP 62 (156)
Q Consensus 50 l~C~IC~~~~~~P 62 (156)
+.|++|...|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 4677776666543
No 227
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=20.78 E-value=29 Score=20.18 Aligned_cols=33 Identities=21% Similarity=0.444 Sum_probs=23.0
Q ss_pred CcccCccccccCCCC-eeccCCCcccHhhHHHHH
Q 041693 48 IELTCPVCLETVFDP-VSLTCGHILCKMCACSAA 80 (156)
Q Consensus 48 ~~l~C~IC~~~~~~P-v~l~CgH~fC~~Ci~~~~ 80 (156)
+=+.|..|...+..- ....=+..||..|..+.+
T Consensus 33 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 66 (81)
T 1a7i_A 33 CCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKY 66 (81)
T ss_dssp SSEECSSSCCEECSSCCEEETTEEECSHHHHHHC
T ss_pred ccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHh
Confidence 357888888877543 333467789999987664
No 228
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=20.78 E-value=44 Score=18.59 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=18.8
Q ss_pred CcccCccccccCCCC-eeccCCCcccHhhHHHH
Q 041693 48 IELTCPVCLETVFDP-VSLTCGHILCKMCACSA 79 (156)
Q Consensus 48 ~~l~C~IC~~~~~~P-v~l~CgH~fC~~Ci~~~ 79 (156)
+-+.|..|...+..- ....=|..||..|..+.
T Consensus 38 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~l 70 (72)
T 3f6q_B 38 QCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQML 70 (72)
T ss_dssp TTSSCTTTCCCCGGGCCEEETTEEECHHHHHHH
T ss_pred CCCcccCCCCCCCCCCeEeECCeEeCHHHHHHh
Confidence 346777777766432 22334677777776543
No 229
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=20.70 E-value=35 Score=14.15 Aligned_cols=12 Identities=17% Similarity=0.703 Sum_probs=7.4
Q ss_pred ccCccccccCCC
Q 041693 50 LTCPVCLETVFD 61 (156)
Q Consensus 50 l~C~IC~~~~~~ 61 (156)
+.|++|...|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 457777666554
No 230
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.45 E-value=66 Score=18.89 Aligned_cols=51 Identities=14% Similarity=0.307 Sum_probs=29.1
Q ss_pred CCcccCccccccCC-CCeec---cCCCcccHhhHHHHHhhhhhccccCCCCCCCCCCCCcCc
Q 041693 47 DIELTCPVCLETVF-DPVSL---TCGHILCKMCACSAASVSIVDGLKLADPTEKCPLCRKAG 104 (156)
Q Consensus 47 ~~~l~C~IC~~~~~-~Pv~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~~~~~CP~Cr~~~ 104 (156)
.+.+.| +|..... .-..+ .|..=|...|+.-.. ........+.||.|+...
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~------~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEE------ENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCH------HHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCccc------ccccCCCeEECCCccccc
Confidence 345666 8988763 22233 476667777773211 001113578999998764
Done!