Query 041695
Match_columns 301
No_of_seqs 142 out of 1310
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 09:43:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 6E-106 1E-110 751.3 24.4 295 1-301 25-324 (324)
2 cd00693 secretory_peroxidase H 100.0 2E-101 5E-106 718.9 25.3 297 1-300 2-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 4.3E-72 9.3E-77 506.2 10.0 228 17-265 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 3.7E-70 8E-75 503.9 21.1 231 15-298 15-257 (289)
5 cd00691 ascorbate_peroxidase A 100.0 6.4E-67 1.4E-71 477.4 19.0 230 12-287 11-252 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 1.2E-65 2.5E-70 467.5 19.8 230 4-286 4-248 (250)
7 cd00692 ligninase Ligninase an 100.0 4.5E-65 9.7E-70 477.9 21.1 236 13-301 16-287 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 1.4E-64 3.1E-69 459.6 19.8 227 7-286 3-248 (251)
9 cd00314 plant_peroxidase_like 100.0 5.6E-59 1.2E-63 426.9 17.0 223 16-282 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 6.5E-58 1.4E-62 435.8 17.9 260 14-291 44-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 3E-54 6.5E-59 434.2 19.7 257 14-289 54-406 (716)
12 PRK15061 catalase/hydroperoxid 100.0 8.9E-52 1.9E-56 414.1 18.5 260 14-291 56-414 (726)
13 cd08201 plant_peroxidase_like_ 100.0 1E-49 2.2E-54 362.0 13.5 211 25-282 35-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 6.1E-41 1.3E-45 308.0 17.4 220 19-284 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 4.4E-35 9.5E-40 295.7 17.8 219 16-284 429-709 (716)
16 PRK15061 catalase/hydroperoxid 100.0 8.1E-35 1.8E-39 292.3 17.6 220 19-284 442-721 (726)
17 COG0376 KatG Catalase (peroxid 100.0 1.8E-31 3.9E-36 257.3 16.3 250 16-284 71-416 (730)
18 COG0376 KatG Catalase (peroxid 99.5 3.8E-13 8.3E-18 131.1 13.2 216 19-284 452-725 (730)
19 PTZ00411 transaldolase-like pr 72.1 20 0.00044 34.4 8.3 50 110-159 179-231 (333)
20 PF11895 DUF3415: Domain of un 58.0 8.6 0.00019 29.2 2.2 19 268-286 2-20 (80)
21 PRK05269 transaldolase B; Prov 55.4 46 0.00099 31.8 7.2 52 110-161 169-223 (318)
22 TIGR00874 talAB transaldolase. 49.2 84 0.0018 30.0 7.9 137 110-270 167-310 (317)
23 KOG0400 40S ribosomal protein 37.4 20 0.00043 29.9 1.5 33 142-174 31-64 (151)
24 PRK12346 transaldolase A; Prov 30.8 31 0.00068 32.9 1.9 65 94-159 150-220 (316)
25 PF14919 MTBP_mid: MDM2-bindin 25.1 77 0.0017 30.4 3.4 69 65-164 265-333 (342)
26 cd00439 Transaldolase Transald 25.0 41 0.00088 31.0 1.5 51 110-161 158-212 (252)
27 PLN02161 beta-amylase 24.5 1E+02 0.0023 31.4 4.3 35 258-296 234-273 (531)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=6e-106 Score=751.28 Aligned_cols=295 Identities=45% Similarity=0.792 Sum_probs=281.3
Q ss_pred CCcCcccccChhHHHHHHHHHHHHHhcCcCchhhhHHhhhcccccCCCCceeeecCCCCCCcccCCCCCCCCCchHHHHH
Q 041695 1 LQVGFYRNSCSSAELIVKDEVRKSVLKDKGVAAGLVRMHFHDCFVRGCDASVLIDSTSSNTAEKDSPVNNPSLRGFEVID 80 (301)
Q Consensus 1 l~~~~y~~sCp~~e~~V~~~v~~~~~~~~~~a~~~lRL~FHDc~v~GcDgSill~~~~~~~~E~~~~~N~~~l~g~~~i~ 80 (301)
|+++||++|||++|+||++.|++.+.++|+++|++|||+||||||+||||||||+++ ..||++++|. +|+||++|+
T Consensus 25 L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~---~~Ek~a~~N~-~l~Gf~~i~ 100 (324)
T PLN03030 25 TRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS---NTEKTALPNL-LLRGYDVID 100 (324)
T ss_pred CccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC---cccccCCCCc-CcchHHHHH
Confidence 789999999999999999999999999999999999999999999999999999864 3799999999 999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHhhhhhhhhhcCCcccccCCCCccCCCCcccccccCCCCCCCCHHHHHHHHHHcCCCccc
Q 041695 81 NAKAALESVCKGIVSCADIVAFAARDSVEISGGLGYDVPSGRRDGRISLASEALTNLPPPTFTVNQLTQSFANKGFTQEE 160 (301)
Q Consensus 81 ~ik~~le~~cp~~vS~ADilalaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e 160 (301)
.||++||++||++||||||||||||+||+++|||.|+|++||||+++|...++. +||.|+.++++|++.|+++||+.+|
T Consensus 101 ~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl~~~D 179 (324)
T PLN03030 101 DAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAKGLNTQD 179 (324)
T ss_pred HHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHcCCCHHH
Confidence 999999999999999999999999999999999999999999999999877775 8999999999999999999999999
Q ss_pred chhcccccccccccccccccccccCCCCC-CCCCCCcHHHHHHHHhhccCCCCCCCCcCCCCCCCCcccCchhHHHHhhc
Q 041695 161 MVTLSGAHTIGRSHCTSFSNRLYNFSGTM-SQDPSLNPMYAAQLKQQCLQDGTNPNLVVPMNPGSPSIADTGYYIDILRN 239 (301)
Q Consensus 161 lVaL~GaHTiG~~~c~~f~~rl~~f~g~~-~~dp~~d~~~~~~L~~~C~~~~~~~~~~~~~d~~tp~~FDn~Yy~~l~~~ 239 (301)
||+||||||||++||.+|.+|||||.+++ ++||+||+.|+++|++.||..+ .....+++|..||.+|||+||+||+++
T Consensus 180 lVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~-~~~~~~~lD~~Tp~~FDn~Yy~nll~~ 258 (324)
T PLN03030 180 LVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNG-DGSRRIALDTGSSNRFDASFFSNLKNG 258 (324)
T ss_pred heeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCC-CCCccccCCCCCCcccccHHHHHHHhc
Confidence 99999999999999999999999999875 5799999999999999999633 223467899999999999999999999
Q ss_pred cccccchhhccCChhhHHHHHHHhcCc----hHHHHHHHHHHHHHHcCCCcCCCCCcccccCccCC
Q 041695 240 RGLFTSDQTLLSDPATASQVNQNAKTP----KLWKTNFAAAMVKMGQIGVLTASAGEIRANCRVVN 301 (301)
Q Consensus 240 ~glL~SD~~L~~d~~t~~~V~~yA~~~----~~F~~dFa~A~~Km~~lgv~tg~~GeiR~~C~~~n 301 (301)
+|+|+|||+|+.|++|+++|++||.|+ ..|+++|++||+|||+|||+||.+||||++|+++|
T Consensus 259 rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 259 RGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred CCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 999999999999999999999999885 59999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.5e-101 Score=718.91 Aligned_cols=297 Identities=61% Similarity=1.015 Sum_probs=286.7
Q ss_pred CCcCcccccChhHHHHHHHHHHHHHhcCcCchhhhHHhhhcccccCCCCceeeecCCCCCCcccCCCCCCCCCchHHHHH
Q 041695 1 LQVGFYRNSCSSAELIVKDEVRKSVLKDKGVAAGLVRMHFHDCFVRGCDASVLIDSTSSNTAEKDSPVNNPSLRGFEVID 80 (301)
Q Consensus 1 l~~~~y~~sCp~~e~~V~~~v~~~~~~~~~~a~~~lRL~FHDc~v~GcDgSill~~~~~~~~E~~~~~N~~~l~g~~~i~ 80 (301)
|+++||++|||++|+||+++|++.+.++++++|++|||+||||||+||||||||+.++++.+|+++++|. +++||++|+
T Consensus 2 L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~-~l~g~~~i~ 80 (298)
T cd00693 2 LSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNL-SLRGFDVID 80 (298)
T ss_pred CCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCC-CcchhHHHH
Confidence 7899999999999999999999999999999999999999999999999999999887778999999999 999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHhhhhhhhhhcCCcccccCCCCccCCCCcccccccCCCCCCCCHHHHHHHHHHcCCCccc
Q 041695 81 NAKAALESVCKGIVSCADIVAFAARDSVEISGGLGYDVPSGRRDGRISLASEALTNLPPPTFTVNQLTQSFANKGFTQEE 160 (301)
Q Consensus 81 ~ik~~le~~cp~~vS~ADilalaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e 160 (301)
.||++||++||++||||||||||+|+||+.+|||.|+|++||+|++++.+..+ +.||.|+.+++++++.|+++||+++|
T Consensus 81 ~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~~d 159 (298)
T cd00693 81 DIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTVTD 159 (298)
T ss_pred HHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCHHH
Confidence 99999999999999999999999999999999999999999999998877665 78999999999999999999999999
Q ss_pred chhcccccccccccccccccccccCCCCCCCCCCCcHHHHHHHHhhccCCCCCCCCcCCCCCCCCcccCchhHHHHhhcc
Q 041695 161 MVTLSGAHTIGRSHCTSFSNRLYNFSGTMSQDPSLNPMYAAQLKQQCLQDGTNPNLVVPMNPGSPSIADTGYYIDILRNR 240 (301)
Q Consensus 161 lVaL~GaHTiG~~~c~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~C~~~~~~~~~~~~~d~~tp~~FDn~Yy~~l~~~~ 240 (301)
||||+||||||++||.+|.+|||+|+|++++||+||+.|+..|++.||... ...+.+++|..||.+|||+||+||+.++
T Consensus 160 ~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~-~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~ 238 (298)
T cd00693 160 LVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGG-DDDTLVPLDPGTPNTFDNSYYKNLLAGR 238 (298)
T ss_pred heeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCC-CCCccccCCCCCCCccccHHHHHHHhcc
Confidence 999999999999999999999999999988999999999999999999754 4456789999999999999999999999
Q ss_pred ccccchhhccCChhhHHHHHHHhcCchHHHHHHHHHHHHHHcCCCcCCCCCcccccCccC
Q 041695 241 GLFTSDQTLLSDPATASQVNQNAKTPKLWKTNFAAAMVKMGQIGVLTASAGEIRANCRVV 300 (301)
Q Consensus 241 glL~SD~~L~~d~~t~~~V~~yA~~~~~F~~dFa~A~~Km~~lgv~tg~~GeiR~~C~~~ 300 (301)
|+|+||++|+.|++|+++|++||.||+.|+++|++||+||++|||+||.+||||++|+++
T Consensus 239 glL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 239 GLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred cCccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 999999999999999999999999999999999999999999999999999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=4.3e-72 Score=506.22 Aligned_cols=228 Identities=55% Similarity=0.958 Sum_probs=209.1
Q ss_pred HHHHHHHHHhcCcCchhhhHHhhhccccc-CCCCceeeecCCCCCCcccCCCCCCCCCc-hHHHHHHHHHHHHhhCCCCC
Q 041695 17 VKDEVRKSVLKDKGVAAGLVRMHFHDCFV-RGCDASVLIDSTSSNTAEKDSPVNNPSLR-GFEVIDNAKAALESVCKGIV 94 (301)
Q Consensus 17 V~~~v~~~~~~~~~~a~~~lRL~FHDc~v-~GcDgSill~~~~~~~~E~~~~~N~~~l~-g~~~i~~ik~~le~~cp~~v 94 (301)
||++|+++++++++++|++|||+|||||+ +|||||||+. ..|+++++|. +|+ ++++|+.||+++|++||++|
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~-----~~e~~~~~N~-gl~~~~~~i~~ik~~~~~~cp~~V 74 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF-----SAEKDAPPNR-GLRDGFDVIDPIKAKLEAACPGVV 74 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS-----TTGGGSGGGT-THHHHHHHHHHHHHHHCHHSTTTS
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc-----cccccccccc-CcceeeechhhHHhhhcccccCCC
Confidence 79999999999999999999999999999 9999999983 4799999999 998 99999999999999999999
Q ss_pred CHHHHHHhhhhhhhhhcCCcccccCCCCccCCCCcccccccCCCCCCCCHHHHHHHHHHcCCCcccchhccccccccccc
Q 041695 95 SCADIVAFAARDSVEISGGLGYDVPSGRRDGRISLASEALTNLPPPTFTVNQLTQSFANKGFTQEEMVTLSGAHTIGRSH 174 (301)
Q Consensus 95 S~ADilalaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~elVaL~GaHTiG~~~ 174 (301)
||||||+||+++||+.+|||.|+|++||+|++++++.++ .+||.|+.++++|++.|+++||+++|||||+||||||++|
T Consensus 75 S~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~ 153 (230)
T PF00141_consen 75 SCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAH 153 (230)
T ss_dssp -HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEES
T ss_pred CHHHHHHHHhhhccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceecccccccce
Confidence 999999999999999999999999999999999999777 6799999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCCCCCCcHHHHHHHHhhccCCCCCCCCcCCCCCCCCcccCchhHHHHhhccccccchhhccCChh
Q 041695 175 CTSFSNRLYNFSGTMSQDPSLNPMYAAQLKQQCLQDGTNPNLVVPMNPGSPSIADTGYYIDILRNRGLFTSDQTLLSDPA 254 (301)
Q Consensus 175 c~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~C~~~~~~~~~~~~~d~~tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~ 254 (301)
|.+|. ||| + .+||.||+.|+.+ .| ..+ + .+.+++| ||.+|||+||++|++++|+|.||++|+.|++
T Consensus 154 c~~f~-rl~-~----~~dp~~d~~~~~~---~C-~~~-~-~~~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~ 219 (230)
T PF00141_consen 154 CSSFS-RLY-F----PPDPTMDPGYAGQ---NC-NSG-G-DNGVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDPE 219 (230)
T ss_dssp GGCTG-GTS-C----SSGTTSTHHHHHH---SS-STS-G-CTCEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHSTT
T ss_pred ecccc-ccc-c----cccccccccccee---cc-CCC-c-ccccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCHH
Confidence 99999 999 4 4689999999988 89 333 2 2377888 9999999999999999999999999999999
Q ss_pred hHHHHHHHhcC
Q 041695 255 TASQVNQNAKT 265 (301)
Q Consensus 255 t~~~V~~yA~~ 265 (301)
|+++|++||+|
T Consensus 220 t~~~V~~yA~d 230 (230)
T PF00141_consen 220 TRPIVERYAQD 230 (230)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhcC
Confidence 99999999976
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=3.7e-70 Score=503.87 Aligned_cols=231 Identities=26% Similarity=0.443 Sum_probs=208.9
Q ss_pred HHHHHHHHHHHhcCcCchhhhHHhhhcccc-------cCCCCceeeecCCCCCCcccCCCCCCCCC-chHHHHHHHHHHH
Q 041695 15 LIVKDEVRKSVLKDKGVAAGLVRMHFHDCF-------VRGCDASVLIDSTSSNTAEKDSPVNNPSL-RGFEVIDNAKAAL 86 (301)
Q Consensus 15 ~~V~~~v~~~~~~~~~~a~~~lRL~FHDc~-------v~GcDgSill~~~~~~~~E~~~~~N~~~l-~g~~~i~~ik~~l 86 (301)
+.++++|++ +.++|.++|.+|||+||||+ ++||||||+++ +|+++++|. +| +||++|+.||+++
T Consensus 15 ~~~~~~~~~-~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~-gL~~g~~vid~iK~~~ 86 (289)
T PLN02608 15 EKARRDLRA-LIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANN-GLKIAIDLCEPVKAKH 86 (289)
T ss_pred HHHHHHHHH-HHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCcccc-chHHHHHHHHHHHHHc
Confidence 456667744 66789999999999999999 89999999984 699999999 99 5999999999987
Q ss_pred HhhCCCCCCHHHHHHhhhhhhhhhcCCcccccCCCCccCCCCcccccccCCCCCCCCHHHHHHHHHHcCCCcccchhccc
Q 041695 87 ESVCKGIVSCADIVAFAARDSVEISGGLGYDVPSGRRDGRISLASEALTNLPPPTFTVNQLTQSFANKGFTQEEMVTLSG 166 (301)
Q Consensus 87 e~~cp~~vS~ADilalaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~elVaL~G 166 (301)
++|||||||+||||+||+++|||.|+|++||+|++++++ +++||.|+.+++++++.|+++||+++|||||+|
T Consensus 87 -----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsG 158 (289)
T PLN02608 87 -----PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPE---EGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSG 158 (289)
T ss_pred -----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCc---cCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcc
Confidence 389999999999999999999999999999999998863 468999999999999999999999999999999
Q ss_pred ccccccccccccccccccCCCCCCCCCCCcHHHHHHHHhhccCCCCCCCCcCCCCCCCCcccCchhHHHHhhc--ccc--
Q 041695 167 AHTIGRSHCTSFSNRLYNFSGTMSQDPSLNPMYAAQLKQQCLQDGTNPNLVVPMNPGSPSIADTGYYIDILRN--RGL-- 242 (301)
Q Consensus 167 aHTiG~~~c~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~C~~~~~~~~~~~~~d~~tp~~FDn~Yy~~l~~~--~gl-- 242 (301)
|||||++||. |+ +|.|. .+ .||.+|||+||+||+.+ +|+
T Consensus 159 AHTiG~ahc~----r~-g~~g~-------------------------------~~-~Tp~~FDN~Yy~~ll~~~~~gll~ 201 (289)
T PLN02608 159 GHTLGRAHPE----RS-GFDGP-------------------------------WT-KEPLKFDNSYFVELLKGESEGLLK 201 (289)
T ss_pred cccccccccc----CC-CCCCC-------------------------------CC-CCCCccChHHHHHHHcCCcCCccc
Confidence 9999999994 54 33221 11 68999999999999998 687
Q ss_pred ccchhhccCChhhHHHHHHHhcCchHHHHHHHHHHHHHHcCCCcCCCCCcccccCc
Q 041695 243 FTSDQTLLSDPATASQVNQNAKTPKLWKTNFAAAMVKMGQIGVLTASAGEIRANCR 298 (301)
Q Consensus 243 L~SD~~L~~d~~t~~~V~~yA~~~~~F~~dFa~A~~Km~~lgv~tg~~GeiR~~C~ 298 (301)
|+||++|+.|++|+++|++||.|+++|+++|++||+||++|||+||.+||+.+.-+
T Consensus 202 L~SD~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~~ 257 (289)
T PLN02608 202 LPTDKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKSTS 257 (289)
T ss_pred cccCHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccCc
Confidence 79999999999999999999999999999999999999999999999999987643
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=6.4e-67 Score=477.43 Aligned_cols=230 Identities=26% Similarity=0.366 Sum_probs=207.9
Q ss_pred hHHHHHHHHHHHHHhcCcCchhhhHHhhhcccccCCCCceeeecCCC---CCCcccCCCCCCCCC-chHHHHHHHHHHHH
Q 041695 12 SAELIVKDEVRKSVLKDKGVAAGLVRMHFHDCFVRGCDASVLIDSTS---SNTAEKDSPVNNPSL-RGFEVIDNAKAALE 87 (301)
Q Consensus 12 ~~e~~V~~~v~~~~~~~~~~a~~~lRL~FHDc~v~GcDgSill~~~~---~~~~E~~~~~N~~~l-~g~~~i~~ik~~le 87 (301)
..+++|+++|++.++ +++++|++|||+|||||+ ||+|++++... .+.+|+++++|. +| +||++|+.||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~-~L~~~~~~i~~iK~~~- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANA-GLDIARKLLEPIKKKY- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCcccc-chHHHHHHHHHHHHHc-
Confidence 468899999999999 999999999999999995 88777764332 234799999999 88 8999999999986
Q ss_pred hhCCCCCCHHHHHHhhhhhhhhhcCCcccccCCCCccCCCCcccccccCCCCCCCCHHHHHHHHHHcCCCcccchhcccc
Q 041695 88 SVCKGIVSCADIVAFAARDSVEISGGLGYDVPSGRRDGRISLASEALTNLPPPTFTVNQLTQSFANKGFTQEEMVTLSGA 167 (301)
Q Consensus 88 ~~cp~~vS~ADilalaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~elVaL~Ga 167 (301)
| +|||||||+||+|+||+.+|||.|+|++||+|+.++....++.+||.|+.+++++++.|+++||+++|||||+||
T Consensus 86 ---~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGa 161 (253)
T cd00691 86 ---P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGA 161 (253)
T ss_pred ---C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhccc
Confidence 4 899999999999999999999999999999999999877777889999999999999999999999999999999
Q ss_pred cccccccccccccccccCCCCCCCCCCCcHHHHHHHHhhccCCCCCCCCcCCCCCCCCcccCchhHHHHhhccc------
Q 041695 168 HTIGRSHCTSFSNRLYNFSGTMSQDPSLNPMYAAQLKQQCLQDGTNPNLVVPMNPGSPSIADTGYYIDILRNRG------ 241 (301)
Q Consensus 168 HTiG~~~c~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~C~~~~~~~~~~~~~d~~tp~~FDn~Yy~~l~~~~g------ 241 (301)
||||++||.. ++|.|+ |..||.+|||+||+||+.++|
T Consensus 162 HTiG~a~c~~-----~~~~g~--------------------------------~~~tp~~FDn~Yy~~ll~~~g~~~~~~ 204 (253)
T cd00691 162 HTLGRCHKER-----SGYDGP--------------------------------WTKNPLKFDNSYFKELLEEDWKLPTPG 204 (253)
T ss_pred ceeecccccC-----CCCCCC--------------------------------CCCCCCcccHHHHHHHhcCCCccCcCc
Confidence 9999999953 233221 115899999999999999999
Q ss_pred --cccchhhccCChhhHHHHHHHhcCchHHHHHHHHHHHHHHcCCCcC
Q 041695 242 --LFTSDQTLLSDPATASQVNQNAKTPKLWKTNFAAAMVKMGQIGVLT 287 (301)
Q Consensus 242 --lL~SD~~L~~d~~t~~~V~~yA~~~~~F~~dFa~A~~Km~~lgv~t 287 (301)
+|+||++|+.|++|+++|+.||+|+++|+++|++||+||+++||..
T Consensus 205 ~~~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~~ 252 (253)
T cd00691 205 LLMLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGVPF 252 (253)
T ss_pred ceechhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999863
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=1.2e-65 Score=467.51 Aligned_cols=230 Identities=29% Similarity=0.481 Sum_probs=206.2
Q ss_pred Cccccc--ChhHHHHHHHHHHHHHhcCcCchhhhHHhhhc-----ccccC--CCCceeeecCCCCCCcccCCCCCCCCC-
Q 041695 4 GFYRNS--CSSAELIVKDEVRKSVLKDKGVAAGLVRMHFH-----DCFVR--GCDASVLIDSTSSNTAEKDSPVNNPSL- 73 (301)
Q Consensus 4 ~~y~~s--Cp~~e~~V~~~v~~~~~~~~~~a~~~lRL~FH-----Dc~v~--GcDgSill~~~~~~~~E~~~~~N~~~l- 73 (301)
+||.-+ |+.+++.|+..+++.+ .+++++|.+|||+|| ||+++ ||||||.. .+|+++++|. +|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~------~~E~~~~~N~-gl~ 75 (250)
T PLN02364 4 NYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF------DAEQAHGANS-GIH 75 (250)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc------cccccCCCcc-CHH
Confidence 566544 7889999999999988 778999999999999 88776 99999954 3699999999 77
Q ss_pred chHHHHHHHHHHHHhhCCCCCCHHHHHHhhhhhhhhhcCCcccccCCCCccCCCCcccccccCCCCCCCCHHHHHHHHHH
Q 041695 74 RGFEVIDNAKAALESVCKGIVSCADIVAFAARDSVEISGGLGYDVPSGRRDGRISLASEALTNLPPPTFTVNQLTQSFAN 153 (301)
Q Consensus 74 ~g~~~i~~ik~~le~~cp~~vS~ADilalaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~ 153 (301)
+||++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|++++++ ++.||.|+.++++|++.|++
T Consensus 76 ~~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~lP~p~~~~~~l~~~F~~ 147 (250)
T PLN02364 76 IALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPP---EGRLPDATKGCDHLRDVFAK 147 (250)
T ss_pred HHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccc---cCCCCCCCcCHHHHHHHHHH
Confidence 7999999999997 489999999999999999999999999999999999864 45799999999999999997
Q ss_pred -cCCCcccchhcccccccccccccccccccccCCCCCCCCCCCcHHHHHHHHhhccCCCCCCCCcCCCCCCCCcccCchh
Q 041695 154 -KGFTQEEMVTLSGAHTIGRSHCTSFSNRLYNFSGTMSQDPSLNPMYAAQLKQQCLQDGTNPNLVVPMNPGSPSIADTGY 232 (301)
Q Consensus 154 -~Gl~~~elVaL~GaHTiG~~~c~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~C~~~~~~~~~~~~~d~~tp~~FDn~Y 232 (301)
+||+++|||||+||||||++|| .|+ +|.|. .+ .||.+|||+|
T Consensus 148 ~~Gl~~~d~VaLsGaHTiG~~hc----~r~-~~~g~-------------------------------~~-~tp~~fDn~Y 190 (250)
T PLN02364 148 QMGLSDKDIVALSGAHTLGRCHK----DRS-GFEGA-------------------------------WT-SNPLIFDNSY 190 (250)
T ss_pred hcCCCHHHheeeecceeeccccC----CCC-CCCCC-------------------------------CC-CCCCccchHH
Confidence 6999999999999999999999 343 33221 11 6899999999
Q ss_pred HHHHhhc--ccccc--chhhccCChhhHHHHHHHhcCchHHHHHHHHHHHHHHcCCCc
Q 041695 233 YIDILRN--RGLFT--SDQTLLSDPATASQVNQNAKTPKLWKTNFAAAMVKMGQIGVL 286 (301)
Q Consensus 233 y~~l~~~--~glL~--SD~~L~~d~~t~~~V~~yA~~~~~F~~dFa~A~~Km~~lgv~ 286 (301)
|++|+.+ +|+|. ||++|+.|++|+.+|+.||.|++.|+++|++||+||++||+-
T Consensus 191 y~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 191 FKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred HHHHhcCCcCCCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 9999998 88865 999999999999999999999999999999999999999973
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=4.5e-65 Score=477.88 Aligned_cols=236 Identities=26% Similarity=0.410 Sum_probs=211.2
Q ss_pred HHHHHHHHHHHHHhcCc---CchhhhHHhhhccccc------------CCCCceeeecCCCCCCcccCCCCCCCCCchHH
Q 041695 13 AELIVKDEVRKSVLKDK---GVAAGLVRMHFHDCFV------------RGCDASVLIDSTSSNTAEKDSPVNNPSLRGFE 77 (301)
Q Consensus 13 ~e~~V~~~v~~~~~~~~---~~a~~~lRL~FHDc~v------------~GcDgSill~~~~~~~~E~~~~~N~~~l~g~~ 77 (301)
+|..|+++|++.+..+. ..|+.+|||+||||++ +|||||||++.+ .|+++++|. +|+ +
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~-gL~--~ 88 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANI-GLD--E 88 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCC-CHH--H
Confidence 68999999999998554 4567799999999996 899999999743 699999999 887 8
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHhhhhhhhh-hcCCcccccCCCCccCCCCcccccccCCCCCCCCHHHHHHHHHHcCC
Q 041695 78 VIDNAKAALESVCKGIVSCADIVAFAARDSVE-ISGGLGYDVPSGRRDGRISLASEALTNLPPPTFTVNQLTQSFANKGF 156 (301)
Q Consensus 78 ~i~~ik~~le~~cp~~vS~ADilalaa~~av~-~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl 156 (301)
+|+.||..+|+.| |||||||+||||+||+ ++|||.|+|++||+|++++.+ ++.||.|+.++++|++.|+++||
T Consensus 89 vvd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~---~g~LP~p~~sv~~l~~~F~~~Gf 162 (328)
T cd00692 89 IVEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAP---DGLVPEPFDSVDKILARFADAGF 162 (328)
T ss_pred HHHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCC
Confidence 9999999999998 9999999999999999 679999999999999999864 45799999999999999999999
Q ss_pred CcccchhcccccccccccccccccccccCCCCCCCCCCCcHHHHHHHHhhccCCCCCCCCcCCCCCCCCcccCchhHHHH
Q 041695 157 TQEEMVTLSGAHTIGRSHCTSFSNRLYNFSGTMSQDPSLNPMYAAQLKQQCLQDGTNPNLVVPMNPGSPSIADTGYYIDI 236 (301)
Q Consensus 157 ~~~elVaL~GaHTiG~~~c~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~C~~~~~~~~~~~~~d~~tp~~FDn~Yy~~l 236 (301)
+++|||||+||||||++|. .||+++ ..++| .||.+|||+||+|+
T Consensus 163 ~~~E~VaLsGAHTiG~a~~---------------~Dps~~--------------------g~p~D-~TP~~FDn~Yf~~l 206 (328)
T cd00692 163 SPDELVALLAAHSVAAQDF---------------VDPSIA--------------------GTPFD-STPGVFDTQFFIET 206 (328)
T ss_pred CHHHHhhhcccccccccCC---------------CCCCCC--------------------CCCCC-CCcchhcHHHHHHH
Confidence 9999999999999999982 256554 13577 69999999999998
Q ss_pred h-hccc-------------------cccchhhccCChhhHHHHHHHhcCchHHHHHHHHHHHHHHcCCCcCCCCCccccc
Q 041695 237 L-RNRG-------------------LFTSDQTLLSDPATASQVNQNAKTPKLWKTNFAAAMVKMGQIGVLTASAGEIRAN 296 (301)
Q Consensus 237 ~-~~~g-------------------lL~SD~~L~~d~~t~~~V~~yA~~~~~F~~dFa~A~~Km~~lgv~tg~~GeiR~~ 296 (301)
+ .+.+ +|+||++|+.|++|+.+|++||.||++|+++|++||+||++|||. .....+
T Consensus 207 l~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~~l~d 282 (328)
T cd00692 207 LLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD----NISLTD 282 (328)
T ss_pred HHcCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC----cchhcc
Confidence 7 4554 499999999999999999999999999999999999999999986 337789
Q ss_pred CccCC
Q 041695 297 CRVVN 301 (301)
Q Consensus 297 C~~~n 301 (301)
|+.|+
T Consensus 283 cs~v~ 287 (328)
T cd00692 283 CSDVI 287 (328)
T ss_pred CcccC
Confidence 99885
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=1.4e-64 Score=459.64 Aligned_cols=227 Identities=29% Similarity=0.434 Sum_probs=202.2
Q ss_pred cccChh-------HHHHHHHHHHHHHhcCcCchhhhHHhhhccccc-------CCCCceeeecCCCCCCcccCCCCCCCC
Q 041695 7 RNSCSS-------AELIVKDEVRKSVLKDKGVAAGLVRMHFHDCFV-------RGCDASVLIDSTSSNTAEKDSPVNNPS 72 (301)
Q Consensus 7 ~~sCp~-------~e~~V~~~v~~~~~~~~~~a~~~lRL~FHDc~v-------~GcDgSill~~~~~~~~E~~~~~N~~~ 72 (301)
++.||. ..+-++.++++.+. +...+|.+|||+||||.+ |||||||++. .|+++++|. +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~------~E~~~~~N~-g 74 (251)
T PLN02879 3 KKSYPEVKEEYKKAVQRCKRKLRGLIA-EKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP------QELAHDANN-G 74 (251)
T ss_pred cccCCCccHHHHHHHHHHHHHHHHHHh-CCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh------hhccCCCcC-C
Confidence 467873 34456888888774 568999999999999975 8999999864 699999999 9
Q ss_pred Cc-hHHHHHHHHHHHHhhCCCCCCHHHHHHhhhhhhhhhcCCcccccCCCCccCCCCcccccccCCCCCCCCHHHHHHHH
Q 041695 73 LR-GFEVIDNAKAALESVCKGIVSCADIVAFAARDSVEISGGLGYDVPSGRRDGRISLASEALTNLPPPTFTVNQLTQSF 151 (301)
Q Consensus 73 l~-g~~~i~~ik~~le~~cp~~vS~ADilalaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F 151 (301)
|+ ++++|+.||+++ ++|||||||+||+++||+++|||.|+|++||+|+.++.+ +++||.|+.+++++++.|
T Consensus 75 L~~~~~~i~~iK~~~-----~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~---~~~lP~p~~~~~~l~~~F 146 (251)
T PLN02879 75 LDIAVRLLDPIKELF-----PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPP---EGRLPQATKGVDHLRDVF 146 (251)
T ss_pred hHHHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCc---ccCCCCCCCCHHHHHHHH
Confidence 98 999999999987 489999999999999999999999999999999998754 468999999999999999
Q ss_pred HHcCCCcccchhcccccccccccccccccccccCCCCCCCCCCCcHHHHHHHHhhccCCCCCCCCcCCCCCCCCcccCch
Q 041695 152 ANKGFTQEEMVTLSGAHTIGRSHCTSFSNRLYNFSGTMSQDPSLNPMYAAQLKQQCLQDGTNPNLVVPMNPGSPSIADTG 231 (301)
Q Consensus 152 ~~~Gl~~~elVaL~GaHTiG~~~c~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~C~~~~~~~~~~~~~d~~tp~~FDn~ 231 (301)
+++||+++|||||+||||||++||. | ++|.|. +| .||.+|||+
T Consensus 147 ~~~Gl~~~dlVALsGaHTiG~ah~~----r-~g~~g~-------------------------------~d-~tp~~FDN~ 189 (251)
T PLN02879 147 GRMGLNDKDIVALSGGHTLGRCHKE----R-SGFEGA-------------------------------WT-PNPLIFDNS 189 (251)
T ss_pred HHcCCCHHHHeeeeccccccccccc----c-ccCCCC-------------------------------CC-CCccceeHH
Confidence 9999999999999999999999994 3 333221 12 589999999
Q ss_pred hHHHHhhc--ccc--ccchhhccCChhhHHHHHHHhcCchHHHHHHHHHHHHHHcCCCc
Q 041695 232 YYIDILRN--RGL--FTSDQTLLSDPATASQVNQNAKTPKLWKTNFAAAMVKMGQIGVL 286 (301)
Q Consensus 232 Yy~~l~~~--~gl--L~SD~~L~~d~~t~~~V~~yA~~~~~F~~dFa~A~~Km~~lgv~ 286 (301)
||++|+.+ +|+ |+||++|+.|++|+++|++||.||++||++|++||+||++||+.
T Consensus 190 Yy~~ll~~~~~gll~L~SD~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 190 YFKEILSGEKEGLLQLPTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred HHHHHHcCCcCCCccchhhHHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 99999998 787 68999999999999999999999999999999999999999974
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=5.6e-59 Score=426.88 Aligned_cols=223 Identities=30% Similarity=0.436 Sum_probs=204.5
Q ss_pred HHHHHHHHHHhcCcCchhhhHHhhhcccccC--------CCCceeeecCCCCCCcccCCCCCCCCC-chHHHHHHHHHHH
Q 041695 16 IVKDEVRKSVLKDKGVAAGLVRMHFHDCFVR--------GCDASVLIDSTSSNTAEKDSPVNNPSL-RGFEVIDNAKAAL 86 (301)
Q Consensus 16 ~V~~~v~~~~~~~~~~a~~~lRL~FHDc~v~--------GcDgSill~~~~~~~~E~~~~~N~~~l-~g~~~i~~ik~~l 86 (301)
.|++.|++.+.+++.+++++|||+||||++. ||||||+++ +|+++++|. +| +++++|+.||.++
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~------~e~~~~~N~-~l~~~~~~l~~ik~~~ 74 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE------PELDRPENG-GLDKALRALEPIKSAY 74 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc------ccccCcccc-cHHHHHHHHHHHHHHc
Confidence 5889999999999999999999999999996 999999997 399999999 64 8999999999999
Q ss_pred HhhCCCCCCHHHHHHhhhhhhhhhc--CCcccccCCCCccCCCCc--ccccccCCCCCCCCHHHHHHHHHHcCCCcccch
Q 041695 87 ESVCKGIVSCADIVAFAARDSVEIS--GGLGYDVPSGRRDGRISL--ASEALTNLPPPTFTVNQLTQSFANKGFTQEEMV 162 (301)
Q Consensus 87 e~~cp~~vS~ADilalaa~~av~~~--GGP~~~v~~GR~D~~~s~--~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~elV 162 (301)
|. |++|||||||++|+++||+.+ |||.|+|++||+|++.++ ...+...+|.|..+++++++.|+++||+++|||
T Consensus 75 ~~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~V 152 (255)
T cd00314 75 DG--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELV 152 (255)
T ss_pred CC--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHH
Confidence 98 889999999999999999999 999999999999999764 334456788888899999999999999999999
Q ss_pred hcc-ccccc-ccccccccccccccCCCCCCCCCCCcHHHHHHHHhhccCCCCCCCCcCCCCCCCCcccCchhHHHHhhcc
Q 041695 163 TLS-GAHTI-GRSHCTSFSNRLYNFSGTMSQDPSLNPMYAAQLKQQCLQDGTNPNLVVPMNPGSPSIADTGYYIDILRNR 240 (301)
Q Consensus 163 aL~-GaHTi-G~~~c~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~C~~~~~~~~~~~~~d~~tp~~FDn~Yy~~l~~~~ 240 (301)
||+ ||||| |++||..+..|+ | .+|..||.+|||+||++|+.+.
T Consensus 153 AL~~GaHti~G~~~~~~~~~~~------------------------~-----------~~~~~tp~~fDN~yy~~l~~~~ 197 (255)
T cd00314 153 ALSAGAHTLGGKNHGDLLNYEG------------------------S-----------GLWTSTPFTFDNAYFKNLLDMN 197 (255)
T ss_pred hhccCCeeccCcccCCCCCccc------------------------C-----------CCCCCCCCccchHHHHHHhcCC
Confidence 999 99999 999998877654 1 1234799999999999999988
Q ss_pred ----------------ccccchhhccCChhhHHHHHHHhcCchHHHHHHHHHHHHHHc
Q 041695 241 ----------------GLFTSDQTLLSDPATASQVNQNAKTPKLWKTNFAAAMVKMGQ 282 (301)
Q Consensus 241 ----------------glL~SD~~L~~d~~t~~~V~~yA~~~~~F~~dFa~A~~Km~~ 282 (301)
++|+||++|+.|++|+.+|++||.|+++|+++|++||+||++
T Consensus 198 ~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 198 WEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred cccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999999999985
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=6.5e-58 Score=435.77 Aligned_cols=260 Identities=19% Similarity=0.274 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHHhcC--------cCchhhhHHhhhccccc-------CCCC-ceeeecCCCCCCcccCCCCCCCCC-chH
Q 041695 14 ELIVKDEVRKSVLKD--------KGVAAGLVRMHFHDCFV-------RGCD-ASVLIDSTSSNTAEKDSPVNNPSL-RGF 76 (301)
Q Consensus 14 e~~V~~~v~~~~~~~--------~~~a~~~lRL~FHDc~v-------~GcD-gSill~~~~~~~~E~~~~~N~~~l-~g~ 76 (301)
.+.|+++|++++... ...+|.+|||+||++.+ ||++ |+|.++ +|++++.|. +| +++
T Consensus 44 ~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~------pe~~~~~N~-gL~~a~ 116 (409)
T cd00649 44 LEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA------PLNSWPDNV-NLDKAR 116 (409)
T ss_pred HHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc------cccCcHhhh-hHHHHH
Confidence 467899999999865 37999999999999986 7997 899876 699999999 77 478
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHhhhhhhhhhcCCcccccCCCCccCCCCccc-------------------------
Q 041695 77 EVIDNAKAALESVCKGIVSCADIVAFAARDSVEISGGLGYDVPSGRRDGRISLAS------------------------- 131 (301)
Q Consensus 77 ~~i~~ik~~le~~cp~~vS~ADilalaa~~av~~~GGP~~~v~~GR~D~~~s~~~------------------------- 131 (301)
.+++.||+++ |..||+||+|+||+.+|||.+|||.|++.+||.|...+...
T Consensus 117 ~~L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl 192 (409)
T cd00649 117 RLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPL 192 (409)
T ss_pred HHHHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccch
Confidence 8888888876 44699999999999999999999999999999999764321
Q ss_pred ----------cccc--CCCCCCCCHHHHHHHHHHcCCCcccchhc-ccccccccccccccccccccCCCCCCCCCCCcHH
Q 041695 132 ----------EALT--NLPPPTFTVNQLTQSFANKGFTQEEMVTL-SGAHTIGRSHCTSFSNRLYNFSGTMSQDPSLNPM 198 (301)
Q Consensus 132 ----------~~~~--~lP~p~~~~~~l~~~F~~~Gl~~~elVaL-~GaHTiG~~~c~~f~~rl~~f~g~~~~dp~~d~~ 198 (301)
.+++ .||+|..++.+|++.|.+|||+.+||||| +||||||++||..|.+||. +||.+++.
T Consensus 193 ~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg-------~dP~~~~~ 265 (409)
T cd00649 193 AAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVG-------PEPEAAPI 265 (409)
T ss_pred hhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCC-------CCCCcCHH
Confidence 0122 69999999999999999999999999999 5999999999999999982 59999999
Q ss_pred HHHHHH--hhccCCCCCCCCcCCCC---CCCCcccCchhHHHHhh-----------------------------------
Q 041695 199 YAAQLK--QQCLQDGTNPNLVVPMN---PGSPSIADTGYYIDILR----------------------------------- 238 (301)
Q Consensus 199 ~~~~L~--~~C~~~~~~~~~~~~~d---~~tp~~FDn~Yy~~l~~----------------------------------- 238 (301)
|++.|+ +.||.+.+.+...+.+| ..||.+|||+||++|+.
T Consensus 266 ~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~ 345 (409)
T cd00649 266 EQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKK 345 (409)
T ss_pred HHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccc
Confidence 999996 88997542334456788 47999999999999998
Q ss_pred -ccccccchhhccCChhhHHHHHHHhcCchHHHHHHHHHHHHH--HcCCCcCCCCC
Q 041695 239 -NRGLFTSDQTLLSDPATASQVNQNAKTPKLWKTNFAAAMVKM--GQIGVLTASAG 291 (301)
Q Consensus 239 -~~glL~SD~~L~~d~~t~~~V~~yA~~~~~F~~dFa~A~~Km--~~lgv~tg~~G 291 (301)
+.+||.||++|+.|++|+++|++||+|+++||++|++||.|| ..+|+++-..|
T Consensus 346 ~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 346 HAPMMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred cCcccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 569999999999999999999999999999999999999999 68999886655
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=3e-54 Score=434.19 Aligned_cols=257 Identities=20% Similarity=0.279 Sum_probs=221.2
Q ss_pred HHHHHHHHHHHHhcC--------cCchhhhHHhhhccccc-------CCC-CceeeecCCCCCCcccCCCCCCCCC-chH
Q 041695 14 ELIVKDEVRKSVLKD--------KGVAAGLVRMHFHDCFV-------RGC-DASVLIDSTSSNTAEKDSPVNNPSL-RGF 76 (301)
Q Consensus 14 e~~V~~~v~~~~~~~--------~~~a~~~lRL~FHDc~v-------~Gc-DgSill~~~~~~~~E~~~~~N~~~l-~g~ 76 (301)
.+.|+++|++++... ...+|.+|||+||++.+ ||| .|+|.+. +|++++.|. +| +++
T Consensus 54 ~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~------P~~sw~~N~-~Ldka~ 126 (716)
T TIGR00198 54 LAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA------PLNSWPDNV-NLDKAR 126 (716)
T ss_pred HHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc------cccCchhhh-hHHHHH
Confidence 456999999999875 37899999999999987 788 5888875 699999999 65 466
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHhhhhhhhhhcCCcccccCCCCccCCCCc---------------------------
Q 041695 77 EVIDNAKAALESVCKGIVSCADIVAFAARDSVEISGGLGYDVPSGRRDGRISL--------------------------- 129 (301)
Q Consensus 77 ~~i~~ik~~le~~cp~~vS~ADilalaa~~av~~~GGP~~~v~~GR~D~~~s~--------------------------- 129 (301)
.+++.||+ +||+.|||||||+||+++||+.+|||.|+|.+||+|+..+.
T Consensus 127 ~lL~pIk~----kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a 202 (716)
T TIGR00198 127 RLLWPIKK----KYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLA 202 (716)
T ss_pred HHHHHHHH----HCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccch
Confidence 77766665 58889999999999999999999999999999999994332
Q ss_pred ----------ccccccCCCCCCCCHHHHHHHHHHcCCCcccchhcc-cccccccccccccccccccCCCCCCCCCCCcHH
Q 041695 130 ----------ASEALTNLPPPTFTVNQLTQSFANKGFTQEEMVTLS-GAHTIGRSHCTSFSNRLYNFSGTMSQDPSLNPM 198 (301)
Q Consensus 130 ----------~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~elVaL~-GaHTiG~~~c~~f~~rl~~f~g~~~~dp~~d~~ 198 (301)
+.. ...+|+|..++.+|++.|++||||.+|||||+ ||||||++||.+|.+|| ++||.+++.
T Consensus 203 ~~~~Gliyvnpeg-~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl-------g~dP~~~~~ 274 (716)
T TIGR00198 203 ATEMGLIYVNPEG-PDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI-------GPDPEGAPI 274 (716)
T ss_pred hhhccccccCccc-ccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC-------CCCCCcCHH
Confidence 111 12699999999999999999999999999995 99999999999999998 369999999
Q ss_pred HHHHHHhhccCCC--CCCCCcCCCC---CCCCcccCchhHHHHhhc----------------------------------
Q 041695 199 YAAQLKQQCLQDG--TNPNLVVPMN---PGSPSIADTGYYIDILRN---------------------------------- 239 (301)
Q Consensus 199 ~~~~L~~~C~~~~--~~~~~~~~~d---~~tp~~FDn~Yy~~l~~~---------------------------------- 239 (301)
|++.|+..||... +.+...+.+| ..||++|||+||+||+.+
T Consensus 275 ~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~ 354 (716)
T TIGR00198 275 EEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHN 354 (716)
T ss_pred HHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccc
Confidence 9999999998532 1223356677 579999999999999974
Q ss_pred cccccchhhccCChhhHHHHHHHhcCchHHHHHHHHHHHHHH--cCCCcCCC
Q 041695 240 RGLFTSDQTLLSDPATASQVNQNAKTPKLWKTNFAAAMVKMG--QIGVLTAS 289 (301)
Q Consensus 240 ~glL~SD~~L~~d~~t~~~V~~yA~~~~~F~~dFa~A~~Km~--~lgv~tg~ 289 (301)
.++|.||++|..|++++++|++||+|+++|+++|++||.||+ .+|++.-.
T Consensus 355 ~~mL~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~~y 406 (716)
T TIGR00198 355 PIMLDADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKSRY 406 (716)
T ss_pred cCccchhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchhhh
Confidence 689999999999999999999999999999999999999998 57765433
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=8.9e-52 Score=414.14 Aligned_cols=260 Identities=20% Similarity=0.296 Sum_probs=223.5
Q ss_pred HHHHHHHHHHHHhcC--------cCchhhhHHhhhccccc-------CCCC-ceeeecCCCCCCcccCCCCCCCCC-chH
Q 041695 14 ELIVKDEVRKSVLKD--------KGVAAGLVRMHFHDCFV-------RGCD-ASVLIDSTSSNTAEKDSPVNNPSL-RGF 76 (301)
Q Consensus 14 e~~V~~~v~~~~~~~--------~~~a~~~lRL~FHDc~v-------~GcD-gSill~~~~~~~~E~~~~~N~~~l-~g~ 76 (301)
.+.|+++|++.+... ...+|.+|||+||++.+ |||+ |+|.+. +|++++.|. +| +++
T Consensus 56 ~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~------pe~~w~~N~-gL~ka~ 128 (726)
T PRK15061 56 LEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA------PLNSWPDNV-NLDKAR 128 (726)
T ss_pred HHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCc------ccccchhhh-hHHHHH
Confidence 457999999999865 37899999999999986 7996 888875 699999999 66 478
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHhhhhhhhhhcCCcccccCCCCccCCCCccc-------------------------
Q 041695 77 EVIDNAKAALESVCKGIVSCADIVAFAARDSVEISGGLGYDVPSGRRDGRISLAS------------------------- 131 (301)
Q Consensus 77 ~~i~~ik~~le~~cp~~vS~ADilalaa~~av~~~GGP~~~v~~GR~D~~~s~~~------------------------- 131 (301)
.+++.||+++ |..||+||+|+||+.+|||.+|||.|++.+||.|...+...
T Consensus 129 ~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~p 204 (726)
T PRK15061 129 RLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENP 204 (726)
T ss_pred HHHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccc
Confidence 8888888876 45799999999999999999999999999999998654321
Q ss_pred -------------ccccCCCCCCCCHHHHHHHHHHcCCCcccchhcc-cccccccccccccccccccCCCCCCCCCCCcH
Q 041695 132 -------------EALTNLPPPTFTVNQLTQSFANKGFTQEEMVTLS-GAHTIGRSHCTSFSNRLYNFSGTMSQDPSLNP 197 (301)
Q Consensus 132 -------------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~elVaL~-GaHTiG~~~c~~f~~rl~~f~g~~~~dp~~d~ 197 (301)
+-+..+|+|..++.+|++.|.+|||+++|||||+ ||||||++||..|.+|| ++||.+++
T Consensus 205 l~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl-------gpdP~~a~ 277 (726)
T PRK15061 205 LAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHV-------GPEPEAAP 277 (726)
T ss_pred hhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccccc-------CCCCCcCH
Confidence 0012489999999999999999999999999995 99999999999999997 36999999
Q ss_pred HHHHHHH--hhccCCCCCCCCcCCCC---CCCCcccCchhHHHHhhc---------------------------------
Q 041695 198 MYAAQLK--QQCLQDGTNPNLVVPMN---PGSPSIADTGYYIDILRN--------------------------------- 239 (301)
Q Consensus 198 ~~~~~L~--~~C~~~~~~~~~~~~~d---~~tp~~FDn~Yy~~l~~~--------------------------------- 239 (301)
.+++.|. +.||.+.+.++....+| ..||.+|||+||++|+.+
T Consensus 278 ~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~ 357 (726)
T PRK15061 278 IEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSK 357 (726)
T ss_pred HHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCccccccc
Confidence 9999996 88997542334456677 579999999999999984
Q ss_pred ---cccccchhhccCChhhHHHHHHHhcCchHHHHHHHHHHHHHHc--CCCcCCCCC
Q 041695 240 ---RGLFTSDQTLLSDPATASQVNQNAKTPKLWKTNFAAAMVKMGQ--IGVLTASAG 291 (301)
Q Consensus 240 ---~glL~SD~~L~~d~~t~~~V~~yA~~~~~F~~dFa~A~~Km~~--lgv~tg~~G 291 (301)
.+||.||++|+.||+++++|++||+|+++|+++|++||.||++ +|+++-..|
T Consensus 358 ~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ry~g 414 (726)
T PRK15061 358 KHAPTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSRYLG 414 (726)
T ss_pred ccCcccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhhhcC
Confidence 5899999999999999999999999999999999999999955 776554333
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=1e-49 Score=362.03 Aligned_cols=211 Identities=26% Similarity=0.347 Sum_probs=175.3
Q ss_pred HhcCcCchhhhHHhhhcccc-------cCCCCceeeecCCCCCCcccC-CCCCCCCCchHHHHHHHHHHHHhhCCCCCCH
Q 041695 25 VLKDKGVAAGLVRMHFHDCF-------VRGCDASVLIDSTSSNTAEKD-SPVNNPSLRGFEVIDNAKAALESVCKGIVSC 96 (301)
Q Consensus 25 ~~~~~~~a~~~lRL~FHDc~-------v~GcDgSill~~~~~~~~E~~-~~~N~~~l~g~~~i~~ik~~le~~cp~~vS~ 96 (301)
...++++++++|||+||||+ ++||||||+++.. .+|+. ...|. ++++|+.|+.+ +|||
T Consensus 35 ~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~---~~En~G~~~n~-~l~~~~~i~~~----------~VSc 100 (264)
T cd08201 35 PGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD---RPENIGSGFNT-TLNFFVNFYSP----------RSSM 100 (264)
T ss_pred cCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---ChhhccCchhh-ccccceeeccC----------ccCH
Confidence 34678999999999999999 8999999999742 46776 44555 78888877543 6999
Q ss_pred HHHHHhhhhhhhhhcCCcccccCCCCccCCCCcccccccCCCCCCCCHHHHHHHHHHcCCCcccchhccc-ccccccccc
Q 041695 97 ADIVAFAARDSVEISGGLGYDVPSGRRDGRISLASEALTNLPPPTFTVNQLTQSFANKGFTQEEMVTLSG-AHTIGRSHC 175 (301)
Q Consensus 97 ADilalaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~elVaL~G-aHTiG~~~c 175 (301)
|||||||+++||+.+|||.|+|++||+|++++.+. .||.|+.++++|++.|+++||+++|||+|+| |||||++||
T Consensus 101 ADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~----glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc 176 (264)
T cd08201 101 ADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA----GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHS 176 (264)
T ss_pred HHHHHHHHHHHHHHcCCCeecccccCCCccccccc----cCCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeeccc
Confidence 99999999999999999999999999999988753 4999999999999999999999999999995 999999999
Q ss_pred cccccccccCCCCCCCCCCCcHHHHHHHHhhccCCCCCCCCcCCCCCCCCcccCchhHHHHhhcc----------ccccc
Q 041695 176 TSFSNRLYNFSGTMSQDPSLNPMYAAQLKQQCLQDGTNPNLVVPMNPGSPSIADTGYYIDILRNR----------GLFTS 245 (301)
Q Consensus 176 ~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~C~~~~~~~~~~~~~d~~tp~~FDn~Yy~~l~~~~----------glL~S 245 (301)
..|.+++ +|.. ..+...++| +||.+|||+||++++.+. -.+.|
T Consensus 177 ~~f~~~~---------~~g~-----------------~~~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~s 229 (264)
T cd08201 177 EDFPEIV---------PPGS-----------------VPDTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNS 229 (264)
T ss_pred ccchhhc---------CCcc-----------------ccCCCCCCC-CCccccchHHHHHHhcCCCCCceeecCCCCccc
Confidence 9887764 1100 001234567 799999999999999864 24689
Q ss_pred hhhccCChhhHHHHHHHhcCchHHHHHHHHHHHHHHc
Q 041695 246 DQTLLSDPATASQVNQNAKTPKLWKTNFAAAMVKMGQ 282 (301)
Q Consensus 246 D~~L~~d~~t~~~V~~yA~~~~~F~~dFa~A~~Km~~ 282 (301)
|..++..+.-. .++..| ++..|.+.++..++||.+
T Consensus 230 d~r~f~~d~n~-t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 230 DLRIFSSDGNV-TMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred hhhheecCccH-HHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 99998754333 467777 799999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=6.1e-41 Score=308.03 Aligned_cols=220 Identities=17% Similarity=0.242 Sum_probs=178.2
Q ss_pred HHHHHHHhcCcCchhhhHHhhhccccc-------CCCCce-eeecCCCCCCcccCCCCCCCC--C-chHHHHHHHHHHHH
Q 041695 19 DEVRKSVLKDKGVAAGLVRMHFHDCFV-------RGCDAS-VLIDSTSSNTAEKDSPVNNPS--L-RGFEVIDNAKAALE 87 (301)
Q Consensus 19 ~~v~~~~~~~~~~a~~~lRL~FHDc~v-------~GcDgS-ill~~~~~~~~E~~~~~N~~~--l-~g~~~i~~ik~~le 87 (301)
+.+++.+......++.||||+||++.+ ||++|+ |.+. +|++++.|. + | +.+.+++.||+++.
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~------pe~~w~~N~-~~~L~~~~~~Le~ik~~~~ 89 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLA------PQKDWEVNE-PEELAKVLAVLEGIQKEFN 89 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCc------cccCcCccC-cHHHHHHHHHHHHHHHHhc
Confidence 567777888888999999999999986 899999 7765 799999999 5 6 47888888888874
Q ss_pred hh-CC-CCCCHHHHHHhhhhhhhhhcCC-----cccccCCCCccCCCCccccc--ccCCCCCC------------CCHHH
Q 041695 88 SV-CK-GIVSCADIVAFAARDSVEISGG-----LGYDVPSGRRDGRISLASEA--LTNLPPPT------------FTVNQ 146 (301)
Q Consensus 88 ~~-cp-~~vS~ADilalaa~~av~~~GG-----P~~~v~~GR~D~~~s~~~~~--~~~lP~p~------------~~~~~ 146 (301)
.. -+ ..||+||+|+||+.+|||.+|| |.|++.+||.|++.+..... ...+|.+. ...++
T Consensus 90 ~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~ 169 (297)
T cd08200 90 ESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEM 169 (297)
T ss_pred ccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHH
Confidence 21 11 2699999999999999999999 99999999999987643211 11345332 23478
Q ss_pred HHHHHHHcCCCcccchhccccc-ccccccccccccccccCCCCCCCCCCCcHHHHHHHHhhccCCCCCCCCcCCCCCCCC
Q 041695 147 LTQSFANKGFTQEEMVTLSGAH-TIGRSHCTSFSNRLYNFSGTMSQDPSLNPMYAAQLKQQCLQDGTNPNLVVPMNPGSP 225 (301)
Q Consensus 147 l~~~F~~~Gl~~~elVaL~GaH-TiG~~~c~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~C~~~~~~~~~~~~~d~~tp 225 (301)
|++.|.++||+++|||||+||| ++|+.|..+ +.|.| ..+|
T Consensus 170 Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s-------~~G~w--------------------------------T~~p 210 (297)
T cd08200 170 LVDKAQLLTLTAPEMTVLVGGLRVLGANYGGS-------KHGVF--------------------------------TDRP 210 (297)
T ss_pred HHHHHHhCCCChHHHhheecchhhcccCCCCC-------CCCCC--------------------------------cCCC
Confidence 9999999999999999999998 799887422 11211 1479
Q ss_pred cccCchhHHHHhhc----------------------c---ccccchhhccCChhhHHHHHHHhcC--chHHHHHHHHHHH
Q 041695 226 SIADTGYYIDILRN----------------------R---GLFTSDQTLLSDPATASQVNQNAKT--PKLWKTNFAAAMV 278 (301)
Q Consensus 226 ~~FDn~Yy~~l~~~----------------------~---glL~SD~~L~~d~~t~~~V~~yA~~--~~~F~~dFa~A~~ 278 (301)
.+|||.||+||++. . ..+.+|.+|.+|++.|++|+.||.| ++.||+||++||.
T Consensus 211 ~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~ 290 (297)
T cd08200 211 GVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWT 290 (297)
T ss_pred CccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 99999999999852 0 1268899999999999999999998 9999999999999
Q ss_pred HHHcCC
Q 041695 279 KMGQIG 284 (301)
Q Consensus 279 Km~~lg 284 (301)
||+++.
T Consensus 291 Klmeld 296 (297)
T cd08200 291 KVMNLD 296 (297)
T ss_pred HHHhcC
Confidence 999873
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=4.4e-35 Score=295.68 Aligned_cols=219 Identities=19% Similarity=0.304 Sum_probs=173.8
Q ss_pred HHHHHHHHH---HhcCcCchhhhHHhhhccccc-------CCCCce-eeecCCCCCCcccCCCCC--CCCC-chHHHHHH
Q 041695 16 IVKDEVRKS---VLKDKGVAAGLVRMHFHDCFV-------RGCDAS-VLIDSTSSNTAEKDSPVN--NPSL-RGFEVIDN 81 (301)
Q Consensus 16 ~V~~~v~~~---~~~~~~~a~~~lRL~FHDc~v-------~GcDgS-ill~~~~~~~~E~~~~~N--~~~l-~g~~~i~~ 81 (301)
+|+++|+.+ +....-..+.||||+||++.+ ||++|+ |.|. +|++++.| . +| +.+.+++.
T Consensus 429 ~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~------pe~~w~~N~p~-gL~~vl~~Le~ 501 (716)
T TIGR00198 429 LSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE------PQKNWPVNEPT-RLAKVLAVLEK 501 (716)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc------hhcCcccCCHH-HHHHHHHHHHH
Confidence 345555543 556677889999999999986 899999 8775 69999999 5 55 47788888
Q ss_pred HHHHHHhhCCCCCCHHHHHHhhhhhhhhhc---CCc--ccccCCCCccCCCCcccccccCCC---CC------------C
Q 041695 82 AKAALESVCKGIVSCADIVAFAARDSVEIS---GGL--GYDVPSGRRDGRISLASEALTNLP---PP------------T 141 (301)
Q Consensus 82 ik~~le~~cp~~vS~ADilalaa~~av~~~---GGP--~~~v~~GR~D~~~s~~~~~~~~lP---~p------------~ 141 (301)
||+++.. ..||.||+|+||+.+|||.+ ||| .|++.+||.|++.... +++...| .+ .
T Consensus 502 Ik~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~~ 577 (716)
T TIGR00198 502 IQAEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYAV 577 (716)
T ss_pred HHHHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhccccccC
Confidence 8887742 26999999999999999998 897 5899999999987643 2222222 11 2
Q ss_pred CCHHHHHHHHHHcCCCcccchhccccc-ccccccccccccccccCCCCCCCCCCCcHHHHHHHHhhccCCCCCCCCcCCC
Q 041695 142 FTVNQLTQSFANKGFTQEEMVTLSGAH-TIGRSHCTSFSNRLYNFSGTMSQDPSLNPMYAAQLKQQCLQDGTNPNLVVPM 220 (301)
Q Consensus 142 ~~~~~l~~~F~~~Gl~~~elVaL~GaH-TiG~~~c~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~C~~~~~~~~~~~~~ 220 (301)
...+.|++.|.++||+++|||||+||| ++|+.|..++ .|.+
T Consensus 578 ~~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s~-------~G~~------------------------------- 619 (716)
T TIGR00198 578 TPEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGSK-------HGVF------------------------------- 619 (716)
T ss_pred CHHHHHHHHHHhCCCChHHHHheecchhhccccCCCCC-------CCCC-------------------------------
Confidence 235678999999999999999999995 9999984221 1111
Q ss_pred CCCCCcccCchhHHHHhhcc-----------------------cc--ccchhhccCChhhHHHHHHHhcCc--hHHHHHH
Q 041695 221 NPGSPSIADTGYYIDILRNR-----------------------GL--FTSDQTLLSDPATASQVNQNAKTP--KLWKTNF 273 (301)
Q Consensus 221 d~~tp~~FDn~Yy~~l~~~~-----------------------gl--L~SD~~L~~d~~t~~~V~~yA~~~--~~F~~dF 273 (301)
..+|.+|||.||+||++.. .+ ..+|.+|.+|++.|++|+.||+|+ +.||+||
T Consensus 620 -T~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF 698 (716)
T TIGR00198 620 -TDRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDF 698 (716)
T ss_pred -cCCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHH
Confidence 1478999999999998620 12 277999999999999999999997 8999999
Q ss_pred HHHHHHHHcCC
Q 041695 274 AAAMVKMGQIG 284 (301)
Q Consensus 274 a~A~~Km~~lg 284 (301)
++||.||++++
T Consensus 699 ~~Aw~Klm~ld 709 (716)
T TIGR00198 699 VAAWTKVMNLD 709 (716)
T ss_pred HHHHHHHHhCC
Confidence 99999999997
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=8.1e-35 Score=292.25 Aligned_cols=220 Identities=19% Similarity=0.285 Sum_probs=179.1
Q ss_pred HHHHHHHhcCcCchhhhHHhhhccccc-------CCCCce-eeecCCCCCCcccCCCCCCC-CC-chHHHHHHHHHHHHh
Q 041695 19 DEVRKSVLKDKGVAAGLVRMHFHDCFV-------RGCDAS-VLIDSTSSNTAEKDSPVNNP-SL-RGFEVIDNAKAALES 88 (301)
Q Consensus 19 ~~v~~~~~~~~~~a~~~lRL~FHDc~v-------~GcDgS-ill~~~~~~~~E~~~~~N~~-~l-~g~~~i~~ik~~le~ 88 (301)
..++..+....-..+.||||+||++.+ ||++|+ |.|. +|++++.|.. +| +.+.+++.||++++.
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~------Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~ 515 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNEPAQLAKVLAVLEGIQAEFNA 515 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc------cccCccccCHHHHHHHHHHHHHHHHHHhh
Confidence 557777777778899999999999986 899999 8876 6999999983 44 478999999999864
Q ss_pred hC--CCCCCHHHHHHhhhhhhhhhc---CC--cccccCCCCccCCCCcccccc---cCCCCCC------------CCHHH
Q 041695 89 VC--KGIVSCADIVAFAARDSVEIS---GG--LGYDVPSGRRDGRISLASEAL---TNLPPPT------------FTVNQ 146 (301)
Q Consensus 89 ~c--p~~vS~ADilalaa~~av~~~---GG--P~~~v~~GR~D~~~s~~~~~~---~~lP~p~------------~~~~~ 146 (301)
.- ...||.||+|+||+.+|||.+ || |.|++.+||.|++.... +++ ..+|.+. ...+.
T Consensus 516 ~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~t-d~esf~~l~P~Adgfrny~~~~~~~~~e~~ 594 (726)
T PRK15061 516 AQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQT-DVESFAVLEPKADGFRNYLKKGYSVSPEEL 594 (726)
T ss_pred ccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCC-CcccccccCCCCccccccccccCCCCHHHH
Confidence 32 136999999999999999988 68 99999999999987543 222 2457543 13478
Q ss_pred HHHHHHHcCCCcccchhccccc-ccccccccccccccccCCCCCCCCCCCcHHHHHHHHhhccCCCCCCCCcCCCCCCCC
Q 041695 147 LTQSFANKGFTQEEMVTLSGAH-TIGRSHCTSFSNRLYNFSGTMSQDPSLNPMYAAQLKQQCLQDGTNPNLVVPMNPGSP 225 (301)
Q Consensus 147 l~~~F~~~Gl~~~elVaL~GaH-TiG~~~c~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~C~~~~~~~~~~~~~d~~tp 225 (301)
|++.|.++||+++|||||+||| ++|+.|..++ .|. + ..+|
T Consensus 595 L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~-------~G~-------------------------------~-T~~p 635 (726)
T PRK15061 595 LVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK-------HGV-------------------------------F-TDRP 635 (726)
T ss_pred HHHHHHhCCCChHHHhheecchhhcccCCCCCC-------CCC-------------------------------C-cCCC
Confidence 9999999999999999999997 7888873221 111 1 1479
Q ss_pred cccCchhHHHHhhcc--------------------c---c--ccchhhccCChhhHHHHHHHhcC--chHHHHHHHHHHH
Q 041695 226 SIADTGYYIDILRNR--------------------G---L--FTSDQTLLSDPATASQVNQNAKT--PKLWKTNFAAAMV 278 (301)
Q Consensus 226 ~~FDn~Yy~~l~~~~--------------------g---l--L~SD~~L~~d~~t~~~V~~yA~~--~~~F~~dFa~A~~ 278 (301)
.+|||.||+||++.. | + +.+|..|.+|++.|++|+.||.| +++||+||++||.
T Consensus 636 ~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~ 715 (726)
T PRK15061 636 GVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWT 715 (726)
T ss_pred CccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 999999999998520 1 2 47899999999999999999999 9999999999999
Q ss_pred HHHcCC
Q 041695 279 KMGQIG 284 (301)
Q Consensus 279 Km~~lg 284 (301)
||++++
T Consensus 716 Kvmeld 721 (726)
T PRK15061 716 KVMNLD 721 (726)
T ss_pred HHHhCC
Confidence 999997
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.8e-31 Score=257.27 Aligned_cols=250 Identities=18% Similarity=0.263 Sum_probs=195.3
Q ss_pred HHHHHHHHHHhcCc--------CchhhhHHhhhccccc-------CCCC-ceeeecCCCCCCcccCCCCCCCCC-chHHH
Q 041695 16 IVKDEVRKSVLKDK--------GVAAGLVRMHFHDCFV-------RGCD-ASVLIDSTSSNTAEKDSPVNNPSL-RGFEV 78 (301)
Q Consensus 16 ~V~~~v~~~~~~~~--------~~a~~~lRL~FHDc~v-------~GcD-gSill~~~~~~~~E~~~~~N~~~l-~g~~~ 78 (301)
.|+.+++..+.... ..+|.+|||+||-+.+ +|.. |.. .+.++.++|.|. +| +++.+
T Consensus 71 Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~q------RFaPlnSWPDN~-nLDKarRL 143 (730)
T COG0376 71 AVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQ------RFAPLNSWPDNA-NLDKARRL 143 (730)
T ss_pred HHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCce------ecccccCCCccc-chHHHHHH
Confidence 46667777776552 5789999999999875 2222 222 245788999999 55 58999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHhhhhhhhhhcCCcccccCCCCccCCCCcc----------------------------
Q 041695 79 IDNAKAALESVCKGIVSCADIVAFAARDSVEISGGLGYDVPSGRRDGRISLA---------------------------- 130 (301)
Q Consensus 79 i~~ik~~le~~cp~~vS~ADilalaa~~av~~~GGP~~~v~~GR~D~~~s~~---------------------------- 130 (301)
+..||+++ +..||+||+|+|++.+|++.+|++.+.+..||.|--.+..
T Consensus 144 LWPIKkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~Plaa 219 (730)
T COG0376 144 LWPIKKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAA 219 (730)
T ss_pred hhhHhHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhh
Confidence 99999876 5689999999999999999999999999999999877654
Q ss_pred ----------cccccCCCCCCCCHHHHHHHHHHcCCCcccchhcc-cccccccccccccccccccCCCCCCCCCCCcHHH
Q 041695 131 ----------SEALTNLPPPTFTVNQLTQSFANKGFTQEEMVTLS-GAHTIGRSHCTSFSNRLYNFSGTMSQDPSLNPMY 199 (301)
Q Consensus 131 ----------~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~elVaL~-GaHTiG~~~c~~f~~rl~~f~g~~~~dp~~d~~~ 199 (301)
.+ ++..|+|-.+..+++..|++|+|+.+|+|||+ ||||+|++|...-.+-+ +++|.-.+--
T Consensus 220 vqMGLIYVNPEG-png~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~v-------g~ePe~a~ie 291 (730)
T COG0376 220 VQMGLIYVNPEG-PNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNV-------GPEPEAAPIE 291 (730)
T ss_pred heeeeEEeCCCC-CCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhc-------CCCccccchh
Confidence 22 34689999999999999999999999999997 69999999975422221 4566655555
Q ss_pred HHHHHh--hccCCCCCCCCcCCC---CCCCCcccCchhHHHHhhc-----------------------------------
Q 041695 200 AAQLKQ--QCLQDGTNPNLVVPM---NPGSPSIADTGYYIDILRN----------------------------------- 239 (301)
Q Consensus 200 ~~~L~~--~C~~~~~~~~~~~~~---d~~tp~~FDn~Yy~~l~~~----------------------------------- 239 (301)
.+.|-. .|..+.+.+.....+ ...||++|||+||.+|...
T Consensus 292 ~qGlGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~ 371 (730)
T COG0376 292 QQGLGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHG 371 (730)
T ss_pred hhccccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccC
Confidence 555543 343322122222222 3468999999999999863
Q ss_pred cccccchhhccCChhhHHHHHHHhcCchHHHHHHHHHHHHHHcCC
Q 041695 240 RGLFTSDQTLLSDPATASQVNQNAKTPKLWKTNFAAAMVKMGQIG 284 (301)
Q Consensus 240 ~glL~SD~~L~~d~~t~~~V~~yA~~~~~F~~dFa~A~~Km~~lg 284 (301)
..||.+|.+|..||.+++|.++|.+|++.|.+.|++||-||.+-.
T Consensus 372 p~MlttDlaLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 372 PMMLTTDLALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred ceeeccchhhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhcc
Confidence 258999999999999999999999999999999999999998743
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.48 E-value=3.8e-13 Score=131.07 Aligned_cols=216 Identities=19% Similarity=0.290 Sum_probs=154.5
Q ss_pred HHHHHHHhcCcCchhhhHHhhhccccc-------CCCCceee-ecCCCCCCcccCCCCCCC-CC-chHHHHHHHHHHHHh
Q 041695 19 DEVRKSVLKDKGVAAGLVRMHFHDCFV-------RGCDASVL-IDSTSSNTAEKDSPVNNP-SL-RGFEVIDNAKAALES 88 (301)
Q Consensus 19 ~~v~~~~~~~~~~a~~~lRL~FHDc~v-------~GcDgSil-l~~~~~~~~E~~~~~N~~-~l-~g~~~i~~ik~~le~ 88 (301)
..++..+.+..-....|+-.+|-.+-+ +|.+|.-+ |. +.++++.|.. .| +-+.+++.|.+..++
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa------PqkdWevN~P~~l~kvl~~le~iq~~fnk 525 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNQPAELAKVLAVLEKIQKEFNK 525 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec------ccccCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 346677777777788999999988865 67877644 54 6899999973 23 357777888777763
Q ss_pred hCCCCCCHHHHHHhhhhhhhhh---cCCc--ccccCCCCccCCCCcccccccC--C-CC------------CCCCHHHHH
Q 041695 89 VCKGIVSCADIVAFAARDSVEI---SGGL--GYDVPSGRRDGRISLASEALTN--L-PP------------PTFTVNQLT 148 (301)
Q Consensus 89 ~cp~~vS~ADilalaa~~av~~---~GGP--~~~v~~GR~D~~~s~~~~~~~~--l-P~------------p~~~~~~l~ 148 (301)
.||.||+|+|++..|||. .+|- .+|+..||.|++..... ++.. | |- ....-.-|+
T Consensus 526 ----kvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtD-v~sf~~LeP~aDGfRNy~~~~~~~~pe~~Lv 600 (730)
T COG0376 526 ----KVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTD-VESFAVLEPIADGFRNYVKKDYVLTPEELLV 600 (730)
T ss_pred ----ccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcc-hhhhhcccccchhhhhhccCCCcCCHHHHHH
Confidence 699999999999999995 3564 45778999999765432 1111 1 21 112244577
Q ss_pred HHHHHcCCCcccchhccccc-ccccccccccccccccCCCCCCCCCCCcHHHHHHHHhhccCCCCCCCCcCCCCCCCCcc
Q 041695 149 QSFANKGFTQEEMVTLSGAH-TIGRSHCTSFSNRLYNFSGTMSQDPSLNPMYAAQLKQQCLQDGTNPNLVVPMNPGSPSI 227 (301)
Q Consensus 149 ~~F~~~Gl~~~elVaL~GaH-TiG~~~c~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~C~~~~~~~~~~~~~d~~tp~~ 227 (301)
+.-+-++|+.-||++|+|+- .+|..+ .| ....++.| .|..
T Consensus 601 DkAqlL~LtapemtVLiGGlRvLg~n~-----------g~--------------------------s~~GVfT~--~pg~ 641 (730)
T COG0376 601 DKAQLLTLTAPEMTVLIGGLRVLGANY-----------GG--------------------------SKHGVFTD--RPGV 641 (730)
T ss_pred HHHHHhccCCccceEEEcceEeeccCC-----------CC--------------------------Cccceecc--Cccc
Confidence 88888999999999999875 333322 11 12233333 5788
Q ss_pred cCchhHHHHhhcc--------------------cc-----ccchhhccCChhhHHHHHHHhcC--chHHHHHHHHHHHHH
Q 041695 228 ADTGYYIDILRNR--------------------GL-----FTSDQTLLSDPATASQVNQNAKT--PKLWKTNFAAAMVKM 280 (301)
Q Consensus 228 FDn~Yy~~l~~~~--------------------gl-----L~SD~~L~~d~~t~~~V~~yA~~--~~~F~~dFa~A~~Km 280 (301)
+.|.||.||++.. |- -..|..+-+++..|.+.+.||.+ ++.|.+||+.||.|.
T Consensus 642 LtndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kV 721 (730)
T COG0376 642 LTNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKV 721 (730)
T ss_pred ccchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 8888888888621 21 24566667889999999999985 789999999999999
Q ss_pred HcCC
Q 041695 281 GQIG 284 (301)
Q Consensus 281 ~~lg 284 (301)
.++.
T Consensus 722 Mn~D 725 (730)
T COG0376 722 MNLD 725 (730)
T ss_pred hccc
Confidence 9874
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=72.14 E-value=20 Score=34.45 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=29.7
Q ss_pred hcCCcccccCCCCccCCCCcccccccCCCCC---CCCHHHHHHHHHHcCCCcc
Q 041695 110 ISGGLGYDVPSGRRDGRISLASEALTNLPPP---TFTVNQLTQSFANKGFTQE 159 (301)
Q Consensus 110 ~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p---~~~~~~l~~~F~~~Gl~~~ 159 (301)
.+|-..+..++||.+..--.+.......+.. -..+.++.+.|++.|+..+
T Consensus 179 eAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~ 231 (333)
T PTZ00411 179 QAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTI 231 (333)
T ss_pred HcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeE
Confidence 3577788999999976432221111111211 2346778888888888653
No 20
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=58.03 E-value=8.6 Score=29.20 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHcCCCc
Q 041695 268 LWKTNFAAAMVKMGQIGVL 286 (301)
Q Consensus 268 ~F~~dFa~A~~Km~~lgv~ 286 (301)
.....|..||.||+.||.-
T Consensus 2 ~m~~~F~~am~KlavLG~d 20 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHD 20 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-
T ss_pred hHHHHHHHHHHHHHHhcCC
Confidence 3567899999999999863
No 21
>PRK05269 transaldolase B; Provisional
Probab=55.36 E-value=46 Score=31.82 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=31.1
Q ss_pred hcCCcccccCCCCccCCCCcccccccCCC---CCCCCHHHHHHHHHHcCCCcccc
Q 041695 110 ISGGLGYDVPSGRRDGRISLASEALTNLP---PPTFTVNQLTQSFANKGFTQEEM 161 (301)
Q Consensus 110 ~~GGP~~~v~~GR~D~~~s~~~~~~~~lP---~p~~~~~~l~~~F~~~Gl~~~el 161 (301)
.+|-..+..++||.|...-...+....-+ ++-..+.++.+.|++.|+..+-|
T Consensus 169 ~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im 223 (318)
T PRK05269 169 EAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVVM 223 (318)
T ss_pred HcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceEE
Confidence 35778889999999864221100000011 12345778888999999986633
No 22
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=49.21 E-value=84 Score=30.04 Aligned_cols=137 Identities=14% Similarity=0.127 Sum_probs=65.7
Q ss_pred hcCCcccccCCCCccCCCCcccccccCCC----CCCCCHHHHHHHHHHcCCCcccchhcccccccccccccccccccccC
Q 041695 110 ISGGLGYDVPSGRRDGRISLASEALTNLP----PPTFTVNQLTQSFANKGFTQEEMVTLSGAHTIGRSHCTSFSNRLYNF 185 (301)
Q Consensus 110 ~~GGP~~~v~~GR~D~~~s~~~~~~~~lP----~p~~~~~~l~~~F~~~Gl~~~elVaL~GaHTiG~~~c~~f~~rl~~f 185 (301)
.+|-..+..++||.+-..-...... ..+ ++-..+.++.+.|++.|+..+=|+|=. .++++... +
T Consensus 167 ~AGa~~ISPFVgRi~dw~~~~~g~~-~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASf--Rn~~qv~~------l--- 234 (317)
T TIGR00874 167 EAKVTLISPFVGRILDWYKAATGKK-EYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASF--RNKEEILA------L--- 234 (317)
T ss_pred HcCCCEEEeecchHhHhhhhccCcc-ccccccCchHHHHHHHHHHHHHcCCCcEEEeecc--CCHHHHHH------H---
Confidence 4577889999999976321111000 111 123457778889999998754333210 11222110 1
Q ss_pred CCCCCCC-CCCcHHHHHHHHhhccCCC--CCCCCcCCCCCCCCcccCchhHHHHhhccccccchhhccCChhhHHHHHHH
Q 041695 186 SGTMSQD-PSLNPMYAAQLKQQCLQDG--TNPNLVVPMNPGSPSIADTGYYIDILRNRGLFTSDQTLLSDPATASQVNQN 262 (301)
Q Consensus 186 ~g~~~~d-p~~d~~~~~~L~~~C~~~~--~~~~~~~~~d~~tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~y 262 (301)
. +.| -+++|...++|...-..-. .........+ .-|..+|...|+..++..+| .-....+-++.|
T Consensus 235 a---G~d~~Ti~p~ll~~L~~~~~~~~~~l~~~~~~~~~-~~~~~~~e~~fr~~~~~d~m--------a~ekl~~gir~F 302 (317)
T TIGR00874 235 A---GCDRLTISPALLDELKESTGPVERKLDPESAKKVD-KQPIILDESEFRFLHNEDAM--------ATEKLAEGIRKF 302 (317)
T ss_pred H---CCCeEeCCHHHHHHHHhCCCCcCccCCcccccccc-ccCCCCCHHHHHHHhCCCcc--------hHHHHHHHHHHH
Confidence 1 112 2577888888865422110 0000000011 12455788888754443221 112234456666
Q ss_pred hcCchHHH
Q 041695 263 AKTPKLWK 270 (301)
Q Consensus 263 A~~~~~F~ 270 (301)
+.|+....
T Consensus 303 ~~d~~~Le 310 (317)
T TIGR00874 303 AADQEKLE 310 (317)
T ss_pred HHHHHHHH
Confidence 66665543
No 23
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=37.43 E-value=20 Score=29.86 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHcCCCcccc-hhccccccccccc
Q 041695 142 FTVNQLTQSFANKGFTQEEM-VTLSGAHTIGRSH 174 (301)
Q Consensus 142 ~~~~~l~~~F~~~Gl~~~el-VaL~GaHTiG~~~ 174 (301)
+++.+.+-.|+++||++.++ |.|--+|-||+++
T Consensus 31 ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 31 DDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVR 64 (151)
T ss_pred HHHHHHHHHHHHcCCChhHceeeeecccCcchhh
Confidence 45666777999999999987 4556999999986
No 24
>PRK12346 transaldolase A; Provisional
Probab=30.82 E-value=31 Score=32.95 Aligned_cols=65 Identities=9% Similarity=0.073 Sum_probs=36.7
Q ss_pred CCHHHHHHhhhhhhhh--hcCCcccccCCCCccCCCCcccccccCCCC----CCCCHHHHHHHHHHcCCCcc
Q 041695 94 VSCADIVAFAARDSVE--ISGGLGYDVPSGRRDGRISLASEALTNLPP----PTFTVNQLTQSFANKGFTQE 159 (301)
Q Consensus 94 vS~ADilalaa~~av~--~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~----p~~~~~~l~~~F~~~Gl~~~ 159 (301)
|+|-=.+.+....|+. .+|-..+..++||.|......... ..++. +-..+.++.+.|++.|+..+
T Consensus 150 I~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~-~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~ 220 (316)
T PRK12346 150 INCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPM-DPYVVEEDPGVKSVRNIYDYYKQHRYETI 220 (316)
T ss_pred CceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhcccc-ccccccCCChHHHHHHHHHHHHHcCCCcE
Confidence 4443334444444433 467788999999998743221110 11211 22347778888888887654
No 25
>PF14919 MTBP_mid: MDM2-binding
Probab=25.09 E-value=77 Score=30.36 Aligned_cols=69 Identities=19% Similarity=0.366 Sum_probs=46.4
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhhCCCCCCHHHHHHhhhhhhhhhcCCcccccCCCCccCCCCcccccccCCCCCCCCH
Q 041695 65 DSPVNNPSLRGFEVIDNAKAALESVCKGIVSCADIVAFAARDSVEISGGLGYDVPSGRRDGRISLASEALTNLPPPTFTV 144 (301)
Q Consensus 65 ~~~~N~~~l~g~~~i~~ik~~le~~cp~~vS~ADilalaa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~ 144 (301)
.||+=. -|+.+|.++++|.+.... .+ ++. -.-.+|++|+...+.+ -.++
T Consensus 265 eWPER~-VLQNlEn~ek~kQK~R~~---~l---------~~S---------seqLLG~Kdg~r~s~t---------LLDA 313 (342)
T PF14919_consen 265 EWPERH-VLQNLENFEKAKQKMRTG---SL---------PRS---------SEQLLGHKDGQRDSVT---------LLDA 313 (342)
T ss_pred cCcHHH-HHHHHHHHHHHHHHHhcc---cC---------CCC---------HHHhcCCCCCCCCCcc---------cccH
Confidence 455443 567889999999887531 11 111 1335789998775442 2467
Q ss_pred HHHHHHHHHcCCCcccchhc
Q 041695 145 NQLTQSFANKGFTQEEMVTL 164 (301)
Q Consensus 145 ~~l~~~F~~~Gl~~~elVaL 164 (301)
.+++..|..-||-+-||--|
T Consensus 314 kELLK~FT~dGlPvgDLQPL 333 (342)
T PF14919_consen 314 KELLKYFTSDGLPVGDLQPL 333 (342)
T ss_pred HHHHhhcCCCCcccCcCccc
Confidence 89999999999998886544
No 26
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=24.95 E-value=41 Score=30.96 Aligned_cols=51 Identities=16% Similarity=-0.029 Sum_probs=29.7
Q ss_pred hcCCcccccCCCCccCCCCcccccccCC-CCCCCC---HHHHHHHHHHcCCCcccc
Q 041695 110 ISGGLGYDVPSGRRDGRISLASEALTNL-PPPTFT---VNQLTQSFANKGFTQEEM 161 (301)
Q Consensus 110 ~~GGP~~~v~~GR~D~~~s~~~~~~~~l-P~p~~~---~~~l~~~F~~~Gl~~~el 161 (301)
.+|-..+..++||.|...-......+ + |..... +.++.+.|+..|...+=|
T Consensus 158 ~Aga~~ispfvgRid~~~~~~~~~~~-~d~~~~~gi~~~~~~~~~~~~~~~~tkiL 212 (252)
T cd00439 158 DAGTSVASPFVSRIDTLMDKMLEQIG-LDLRGKAGVAQVTLAYKLYKQKFKKQRVL 212 (252)
T ss_pred HcCCCEEEEeccHHHHHhhhhccccc-cccccCcHHHHHHHHHHHHHHhCCCCeEE
Confidence 35777889999999976543222111 1 111123 446677777778765533
No 27
>PLN02161 beta-amylase
Probab=24.53 E-value=1e+02 Score=31.39 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=24.9
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHH-----cCCCcCCCCCccccc
Q 041695 258 QVNQNAKTPKLWKTNFAAAMVKMG-----QIGVLTASAGEIRAN 296 (301)
Q Consensus 258 ~V~~yA~~~~~F~~dFa~A~~Km~-----~lgv~tg~~GeiR~~ 296 (301)
-++.|. .|.+.|..+|.-+. +|.|=-|+.||.|--
T Consensus 234 plq~Y~----Dfm~SFr~~F~~~~~~~I~eI~VGlGP~GELRYP 273 (531)
T PLN02161 234 AVQCYE----DFMLSFSTKFEPYIGNVIEEISIGLGPSGELRYP 273 (531)
T ss_pred HHHHHH----HHHHHHHHHHHHHhcCceEEEEeccccCccccCC
Confidence 467775 47777777777754 555556899999953
Done!