BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041697
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 8/100 (8%)
Query: 8 LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNAD 67
LP GF+F P+D+ELVEHYL +K +G +P+ I + +LY+ P WD A
Sbjct: 15 LPPGFRFHPTDDELVEHYLCRKAAGQRLPVP--IIAEVDLYKFDP---WDLPERALFGAR 69
Query: 68 EDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIV 107
E YFFT +K GSR +R G+ G W+ A K +
Sbjct: 70 E-WYFFTPRDRKYPNGSRPNRAAGN--GYWKATGADKPVA 106
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 10/139 (7%)
Query: 8 LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNAD 67
LP GF+F P+DEEL+ YL +K +G L I + +LY+ P + + L +
Sbjct: 17 LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFDPWVLPNKA----LFGE 70
Query: 68 EDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVXXXXXXXXXXXXXFRYEKKD 127
++ YFF+ +K GSR +R GS G W+ K I F K
Sbjct: 71 KEWYFFSPRDRKYPNGSRPNRVAGS--GYWKATGTDKIISTEGQRVGIKKALVFYIGKA- 127
Query: 128 LPKNQATNYVLCRLRKNQP 146
PK TN+++ R +P
Sbjct: 128 -PKGTKTNWIMHEYRLIEP 145
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 10/139 (7%)
Query: 8 LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNAD 67
LP GF+F P+DEEL+ YL +K +G L I + +LY+ P + + L +
Sbjct: 20 LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFDPWVLPNKA----LFGE 73
Query: 68 EDLYFFTQLKKKSSKGSRIDRKVGSSGGAWQGEDAGKDIVXXXXXXXXXXXXXFRYEKKD 127
++ YFF+ +K GSR +R GS G W+ K I F K
Sbjct: 74 KEWYFFSPRDRKYPNGSRPNRVAGS--GYWKATGTDKIISTEGQRVGIKKALVFYIGKA- 130
Query: 128 LPKNQATNYVLCRLRKNQP 146
PK TN+++ R +P
Sbjct: 131 -PKGTKTNWIMHEYRLIEP 148
>pdb|2W49|2 Chain 2, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|5 Chain 5, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|8 Chain 8, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|2 Chain 2, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|5 Chain 5, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|8 Chain 8, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 141
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 149 QDKKYSSAKKRKLNDIQHNSNQSEQVTDTEVERVLTHQENQQQNYVHYQEVSCSSTGMMN 208
++KK +A R+ QH + Q+ TE+E+ +E ++QNY+ S G M
Sbjct: 1 EEKKRRAATARR----QHLKSAMLQLAVTEIEKEAAAKEVEKQNYLAEHSPPLSLPGSMQ 56
Query: 209 E-QSLSGGM 216
E Q LS +
Sbjct: 57 ELQELSKKL 65
>pdb|1YV0|I Chain I, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
Length = 137
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 149 QDKKYSSAKKRKLNDIQHNSNQSEQVTDTEVERVLTHQENQQQNYVHYQEVSCSSTGMMN 208
++KK +A R+ QH + Q+ TE+E+ +E ++QNY+ S G M
Sbjct: 3 EEKKRRAATARR----QHLKSAMLQLAVTEIEKEAAAKEVEKQNYLAEHSPPLSLPGSMQ 58
Query: 209 E-QSLSGGM 216
E Q LS +
Sbjct: 59 ELQELSKKL 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,857,192
Number of Sequences: 62578
Number of extensions: 269827
Number of successful extensions: 544
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 536
Number of HSP's gapped (non-prelim): 9
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)