Query 041697
Match_columns 230
No_of_seqs 143 out of 877
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 16:36:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 5.4E-51 1.9E-55 342.0 11.7 146 3-158 10-169 (174)
2 1ut7_A No apical meristem prot 100.0 3.3E-50 1.1E-54 336.5 12.0 145 5-159 14-167 (171)
3 1ldd_A APC2WHB, anaphase promo 44.8 12 0.00041 26.4 2.2 28 8-36 36-64 (74)
4 3nr5_A MAF1, repressor of RNA 41.4 7.2 0.00025 31.7 0.7 14 42-55 119-132 (164)
5 1f6k_A N-acetylneuraminate lya 16.8 52 0.0018 28.2 1.7 19 7-26 105-123 (293)
6 2ehh_A DHDPS, dihydrodipicolin 16.7 53 0.0018 28.2 1.7 28 7-37 101-129 (294)
7 2ojp_A DHDPS, dihydrodipicolin 16.6 53 0.0018 28.1 1.7 28 7-37 102-130 (292)
8 3cpr_A Dihydrodipicolinate syn 16.6 53 0.0018 28.4 1.7 28 7-37 117-145 (304)
9 2nuw_A 2-keto-3-deoxygluconate 16.1 67 0.0023 27.5 2.2 28 7-37 97-126 (288)
10 2yxg_A DHDPS, dihydrodipicolin 16.1 56 0.0019 28.0 1.7 28 7-37 101-129 (289)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=5.4e-51 Score=341.99 Aligned_cols=146 Identities=31% Similarity=0.525 Sum_probs=126.8
Q ss_pred CCCCCCCCCceeCCChHHHHHHHHHHHHhCCCCCcccceeeeccCCCCCCCcccccCCCCCCCCCCcEEEEecccccCCC
Q 041697 3 EHIPFLPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNADEDLYFFTQLKKKSSK 82 (230)
Q Consensus 3 ~~~~~LPpGfRF~PTDeELI~~YL~~Ki~g~~~p~~~~vI~~~DvY~~ePw~L~~~~~~~~~~~~~~wYFFs~r~~k~~~ 82 (230)
+....|||||||+|||||||.|||++|+.|.++|.. +|+++|||++|||+||+.. ..++++||||+++++|+++
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~--~I~evDvy~~~Pw~Lp~~~----~~g~~ewYFFs~r~~ky~~ 83 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVP--IIAEVDLYKFDPWDLPERA----LFGAREWYFFTPRDRKYPN 83 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSS--CCEECCGGGSCGGGSGGGC----SSCSSEEEEEEECCC----
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcC--eeeecccccCCchhhhhhh----ccCCceEEEEeccccccCC
Confidence 445689999999999999999999999999988764 9999999999999999863 2457899999999999999
Q ss_pred CCccccccCCCCceeeeccCCceEEeCCCceEEEEEEEeecCcCCCCCCCCCCeEEEEEEeCCC--------------CC
Q 041697 83 GSRIDRKVGSSGGAWQGEDAGKDIVSGQSKIKIGSKKQFRYEKKDLPKNQATNYVLCRLRKNQP--------------IG 148 (230)
Q Consensus 83 g~R~~R~v~~~~G~Wk~~g~~k~I~~~~~g~~iG~Kk~l~fy~~~~~~~~kt~WvM~Ey~l~~~--------------~~ 148 (230)
|.|++|+++ +|+||++|++++|... |.+||+|++|+||.+++|++.+|+||||||+|... .+
T Consensus 84 g~R~nR~t~--~G~WkatG~dk~I~~~--g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~ 159 (174)
T 3ulx_A 84 GSRPNRAAG--NGYWKATGADKPVAPR--GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDD 159 (174)
T ss_dssp -CCSCEEET--TEEEEECSCCEEECCS--SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSS
T ss_pred CCCceeecC--CceEccCCCCcEEeeC--CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCC
Confidence 999999999 9999999999999864 57999999999999999999999999999999754 24
Q ss_pred CCceeeeecc
Q 041697 149 QDKKYSSAKK 158 (230)
Q Consensus 149 ~~l~~~~~kk 158 (230)
++||||..|+
T Consensus 160 wVlCrvf~K~ 169 (174)
T 3ulx_A 160 WVLCRLYNKK 169 (174)
T ss_dssp EEEEEEEESC
T ss_pred EEEEEEEEcC
Confidence 7899998775
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=3.3e-50 Score=336.54 Aligned_cols=145 Identities=30% Similarity=0.483 Sum_probs=124.6
Q ss_pred CCCCCCCceeCCChHHHHHHHHHHHHhCCCCCcccceeeeccCCCCCCCcccccCCCCCCCCCCcEEEEecccccCCCCC
Q 041697 5 IPFLPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYFIRDCNLYETKPSKIWDSHGGPFLNADEDLYFFTQLKKKSSKGS 84 (230)
Q Consensus 5 ~~~LPpGfRF~PTDeELI~~YL~~Ki~g~~~p~~~~vI~~~DvY~~ePw~L~~~~~~~~~~~~~~wYFFs~r~~k~~~g~ 84 (230)
...|||||||+|||||||.|||++|+.|.++|.+ +|+++|||.+|||+|++.. ..++++||||+++++|+++|.
T Consensus 14 ~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~--~I~e~Diy~~~Pw~Lp~~~----~~g~~ewyFFs~r~~k~~~g~ 87 (171)
T 1ut7_A 14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFDPWVLPNKA----LFGEKEWYFFSPRDRKYPNGS 87 (171)
T ss_dssp SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSC--CSEECCGGGSCGGGHHHHS----SSCSSEEEEEEECCC------
T ss_pred ccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCC--eEeecccccCChhHhhchh----hcCCccEEEEeccccccCCCC
Confidence 5689999999999999999999999999988754 8999999999999999863 246789999999999999999
Q ss_pred ccccccCCCCceeeeccCCceEEeCCCceEEEEEEEeecCcCCCCCCCCCCeEEEEEEeCCCC---------CCCceeee
Q 041697 85 RIDRKVGSSGGAWQGEDAGKDIVSGQSKIKIGSKKQFRYEKKDLPKNQATNYVLCRLRKNQPI---------GQDKKYSS 155 (230)
Q Consensus 85 R~~R~v~~~~G~Wk~~g~~k~I~~~~~g~~iG~Kk~l~fy~~~~~~~~kt~WvM~Ey~l~~~~---------~~~l~~~~ 155 (230)
|++|+|+ +|+||++|++++|... +.+||+|++|+||.+++|++.+|+||||||++.... +++||+|.
T Consensus 88 R~~R~t~--~G~Wk~tG~~k~I~~~--~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~ 163 (171)
T 1ut7_A 88 RPNRVAG--SGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIY 163 (171)
T ss_dssp -CCEEET--TEEEEEEEEEEEEEET--TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEE
T ss_pred cccccCC--CCEEeccCCCceEEec--CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEE
Confidence 9999999 9999999999999974 489999999999999999999999999999998653 57899998
Q ss_pred eccc
Q 041697 156 AKKR 159 (230)
Q Consensus 156 ~kkr 159 (230)
.|++
T Consensus 164 ~k~~ 167 (171)
T 1ut7_A 164 KKQS 167 (171)
T ss_dssp ECC-
T ss_pred EcCC
Confidence 7753
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=44.77 E-value=12 Score=26.42 Aligned_cols=28 Identities=14% Similarity=0.343 Sum_probs=23.4
Q ss_pred CCCCceeCC-ChHHHHHHHHHHHHhCCCCC
Q 041697 8 LPHGFQFRP-SDEELVEHYLKKKVSGTLIP 36 (230)
Q Consensus 8 LPpGfRF~P-TDeELI~~YL~~Ki~g~~~p 36 (230)
.|.|+.|.. |++||-. ||-.++..+.+-
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 377999999 9999988 899999986553
No 4
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=41.42 E-value=7.2 Score=31.72 Aligned_cols=14 Identities=21% Similarity=0.726 Sum_probs=11.6
Q ss_pred eeeccCCCCCCCcc
Q 041697 42 IRDCNLYETKPSKI 55 (230)
Q Consensus 42 I~~~DvY~~ePw~L 55 (230)
+.+||||++.|..-
T Consensus 119 l~dC~IYsY~Pd~~ 132 (164)
T 3nr5_A 119 LAECDIYSYNPDLD 132 (164)
T ss_dssp GGGCEEEEECCCGG
T ss_pred ccCCeEEEEcCCCC
Confidence 67899999999843
No 5
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=16.79 E-value=52 Score=28.21 Aligned_cols=19 Identities=16% Similarity=0.112 Sum_probs=14.7
Q ss_pred CCCCCceeCCChHHHHHHHH
Q 041697 7 FLPHGFQFRPSDEELVEHYL 26 (230)
Q Consensus 7 ~LPpGfRF~PTDeELI~~YL 26 (230)
-+||-| |.||+++|+.||-
T Consensus 105 v~~P~y-~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 105 AVTPFY-YKFSFPEIKHYYD 123 (293)
T ss_dssp EECCCS-SCCCHHHHHHHHH
T ss_pred ECCCCC-CCCCHHHHHHHHH
Confidence 356654 8899999999874
No 6
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=16.73 E-value=53 Score=28.21 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=18.5
Q ss_pred CCCCCceeCCChHHHHHHHHHHHHhC-CCCCc
Q 041697 7 FLPHGFQFRPSDEELVEHYLKKKVSG-TLIPL 37 (230)
Q Consensus 7 ~LPpGfRF~PTDeELI~~YL~~Ki~g-~~~p~ 37 (230)
-+||- .|.||+++|+.||- .|.. -.+|+
T Consensus 101 v~~P~-y~~~s~~~l~~~f~--~va~a~~lPi 129 (294)
T 2ehh_A 101 VVVPY-YNKPTQRGLYEHFK--TVAQEVDIPI 129 (294)
T ss_dssp EECCC-SSCCCHHHHHHHHH--HHHHHCCSCE
T ss_pred ECCCC-CCCCCHHHHHHHHH--HHHHhcCCCE
Confidence 35664 48899999999874 3433 34554
No 7
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=16.57 E-value=53 Score=28.14 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=18.5
Q ss_pred CCCCCceeCCChHHHHHHHHHHHHhC-CCCCc
Q 041697 7 FLPHGFQFRPSDEELVEHYLKKKVSG-TLIPL 37 (230)
Q Consensus 7 ~LPpGfRF~PTDeELI~~YL~~Ki~g-~~~p~ 37 (230)
-+||-| |.||+++|+.||- .|.. -++|+
T Consensus 102 v~~P~y-~~~s~~~l~~~f~--~ia~a~~lPi 130 (292)
T 2ojp_A 102 TVTPYY-NRPSQEGLYQHFK--AIAEHTDLPQ 130 (292)
T ss_dssp EECCCS-SCCCHHHHHHHHH--HHHTTCSSCE
T ss_pred ECCCCC-CCCCHHHHHHHHH--HHHHhcCCCE
Confidence 356644 8899999999873 4544 34443
No 8
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=16.56 E-value=53 Score=28.40 Aligned_cols=28 Identities=25% Similarity=0.568 Sum_probs=18.7
Q ss_pred CCCCCceeCCChHHHHHHHHHHHHhC-CCCCc
Q 041697 7 FLPHGFQFRPSDEELVEHYLKKKVSG-TLIPL 37 (230)
Q Consensus 7 ~LPpGfRF~PTDeELI~~YL~~Ki~g-~~~p~ 37 (230)
-+|| |.|.||+++|+.||- .|.. -.+|+
T Consensus 117 v~~P-~y~~~~~~~l~~~f~--~ia~a~~lPi 145 (304)
T 3cpr_A 117 VVTP-YYSKPSQEGLLAHFG--AIAAATEVPI 145 (304)
T ss_dssp EECC-CSSCCCHHHHHHHHH--HHHHHCCSCE
T ss_pred ECCC-CCCCCCHHHHHHHHH--HHHHhcCCCE
Confidence 4577 458899999999873 3333 34554
No 9
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=16.10 E-value=67 Score=27.48 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=18.4
Q ss_pred CCCCCceeC-CChHHHHHHHHHHHHhC-CCCCc
Q 041697 7 FLPHGFQFR-PSDEELVEHYLKKKVSG-TLIPL 37 (230)
Q Consensus 7 ~LPpGfRF~-PTDeELI~~YL~~Ki~g-~~~p~ 37 (230)
-+||-| |. ||+++|+.||- .|.. -++|+
T Consensus 97 v~~P~y-~~~~s~~~l~~~f~--~va~a~~lPi 126 (288)
T 2nuw_A 97 SHSPYY-FPRLPEKFLAKYYE--EIARISSHSL 126 (288)
T ss_dssp ECCCCS-SCSCCHHHHHHHHH--HHHHHCCSCE
T ss_pred EcCCcC-CCCCCHHHHHHHHH--HHHHhcCCCE
Confidence 456654 77 99999999874 3333 34554
No 10
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=16.08 E-value=56 Score=27.97 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=18.4
Q ss_pred CCCCCceeCCChHHHHHHHHHHHHhC-CCCCc
Q 041697 7 FLPHGFQFRPSDEELVEHYLKKKVSG-TLIPL 37 (230)
Q Consensus 7 ~LPpGfRF~PTDeELI~~YL~~Ki~g-~~~p~ 37 (230)
-+||-| |.||+++|+.||- .|.. -.+|+
T Consensus 101 v~~P~y-~~~s~~~l~~~f~--~ia~a~~lPi 129 (289)
T 2yxg_A 101 SITPYY-NKPTQEGLRKHFG--KVAESINLPI 129 (289)
T ss_dssp EECCCS-SCCCHHHHHHHHH--HHHHHCSSCE
T ss_pred ECCCCC-CCCCHHHHHHHHH--HHHHhcCCCE
Confidence 356644 8899999999873 3433 34554
Done!