Query 041698
Match_columns 355
No_of_seqs 298 out of 2080
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 09:44:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041698.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041698hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569 Permease of the major 100.0 3.5E-35 7.6E-40 259.6 27.9 332 16-354 2-341 (485)
2 PRK10077 xylE D-xylose transpo 100.0 5.7E-33 1.2E-37 255.6 29.6 320 19-354 6-342 (479)
3 TIGR00887 2A0109 phosphate:H+ 100.0 8.1E-34 1.8E-38 261.9 20.0 321 17-353 8-370 (502)
4 KOG0254 Predicted transporter 100.0 3.8E-32 8.2E-37 250.9 28.9 321 18-354 38-365 (513)
5 TIGR01299 synapt_SV2 synaptic 100.0 1.4E-32 2.9E-37 258.2 23.6 210 20-249 162-381 (742)
6 TIGR00879 SP MFS transporter, 100.0 3.2E-31 6.8E-36 243.9 28.4 320 19-353 22-354 (481)
7 COG2814 AraJ Arabinose efflux 100.0 2.9E-31 6.3E-36 228.1 21.0 265 26-351 14-279 (394)
8 COG2271 UhpC Sugar phosphate p 100.0 4.4E-32 9.5E-37 230.1 14.3 293 19-351 23-323 (448)
9 TIGR02332 HpaX 4-hydroxyphenyl 100.0 4.3E-31 9.3E-36 237.7 20.7 297 24-350 7-311 (412)
10 PRK10642 proline/glycine betai 100.0 4E-31 8.7E-36 243.1 20.9 288 25-353 16-321 (490)
11 PRK10406 alpha-ketoglutarate t 100.0 1.4E-30 3E-35 236.2 22.3 280 21-353 18-314 (432)
12 TIGR00891 2A0112 putative sial 100.0 6E-30 1.3E-34 230.5 23.5 301 19-353 6-309 (405)
13 PF00083 Sugar_tr: Sugar (and 100.0 2.5E-35 5.5E-40 269.1 -14.5 314 30-354 5-322 (451)
14 PRK12307 putative sialic acid 100.0 1.6E-29 3.6E-34 229.2 20.1 288 21-353 14-301 (426)
15 TIGR00898 2A0119 cation transp 100.0 1.2E-29 2.6E-34 235.0 18.7 273 68-353 112-390 (505)
16 PRK11551 putative 3-hydroxyphe 100.0 3.6E-29 7.8E-34 225.6 20.3 277 22-352 12-289 (406)
17 PRK03545 putative arabinose tr 100.0 1.2E-28 2.6E-33 220.8 20.4 238 72-351 36-274 (390)
18 PRK09952 shikimate transporter 100.0 1.3E-28 2.9E-33 223.2 20.7 280 24-353 21-321 (438)
19 TIGR00895 2A0115 benzoate tran 100.0 9.4E-29 2E-33 222.1 19.4 302 23-350 15-317 (398)
20 PRK09556 uhpT sugar phosphate 100.0 1.5E-29 3.1E-34 231.7 14.1 295 21-352 25-328 (467)
21 PRK11663 regulatory protein Uh 100.0 7.2E-29 1.6E-33 225.0 18.3 282 23-345 21-306 (434)
22 PRK14995 methyl viologen resis 100.0 5.5E-29 1.2E-33 229.2 16.9 301 23-353 4-330 (495)
23 PRK15075 citrate-proton sympor 100.0 2.7E-28 5.8E-33 221.4 20.8 274 26-353 16-309 (434)
24 TIGR00894 2A0114euk Na(+)-depe 100.0 4.7E-28 1E-32 221.9 20.7 307 19-349 13-328 (465)
25 PRK03893 putative sialic acid 100.0 3.1E-27 6.7E-32 218.5 24.3 317 14-353 9-346 (496)
26 PRK10213 nepI ribonucleoside t 100.0 1.8E-27 3.9E-32 212.9 21.7 236 72-349 47-283 (394)
27 PRK10091 MFS transport protein 100.0 1.4E-27 3E-32 213.3 19.9 237 75-353 33-270 (382)
28 PRK09705 cynX putative cyanate 100.0 5.2E-27 1.1E-31 210.1 21.7 239 72-353 36-275 (393)
29 PRK15034 nitrate/nitrite trans 100.0 3.1E-27 6.8E-32 210.3 18.1 287 5-353 14-321 (462)
30 TIGR00903 2A0129 major facilit 100.0 3E-27 6.5E-32 208.7 17.7 235 72-348 18-253 (368)
31 PRK03699 putative transporter; 100.0 1E-26 2.2E-31 208.6 21.3 267 26-352 8-275 (394)
32 TIGR00893 2A0114 d-galactonate 100.0 1.9E-27 4.2E-32 213.3 15.5 259 72-349 21-282 (399)
33 TIGR00711 efflux_EmrB drug res 99.9 1.2E-26 2.5E-31 214.1 19.6 298 27-353 4-326 (485)
34 KOG2532 Permease of the major 99.9 1.6E-26 3.4E-31 207.1 19.4 253 72-348 65-324 (466)
35 TIGR00710 efflux_Bcr_CflA drug 99.9 9.5E-27 2.1E-31 208.3 18.1 239 76-352 36-276 (385)
36 TIGR00890 2A0111 Oxalate/Forma 99.9 6.1E-27 1.3E-31 208.8 16.6 244 73-353 31-275 (377)
37 KOG2533 Permease of the major 99.9 2.8E-27 6.1E-32 212.3 14.2 289 23-345 43-336 (495)
38 PLN00028 nitrate transmembrane 99.9 1.7E-26 3.8E-31 211.3 19.0 248 72-348 63-318 (476)
39 PRK15402 multidrug efflux syst 99.9 4.3E-26 9.4E-31 205.4 20.8 277 20-353 8-286 (406)
40 PRK15403 multidrug efflux syst 99.9 6.5E-26 1.4E-30 204.1 19.9 264 28-348 19-285 (413)
41 TIGR00900 2A0121 H+ Antiporter 99.9 2.7E-26 5.8E-31 203.8 16.5 245 76-353 30-282 (365)
42 TIGR00881 2A0104 phosphoglycer 99.9 1.1E-26 2.3E-31 207.4 12.8 252 76-346 26-280 (379)
43 PF07690 MFS_1: Major Facilita 99.9 9.7E-27 2.1E-31 205.6 12.1 249 72-351 24-276 (352)
44 KOG1330 Sugar transporter/spin 99.9 1.2E-27 2.5E-32 205.2 5.8 277 23-347 31-312 (493)
45 PRK11102 bicyclomycin/multidru 99.9 3.7E-26 8E-31 204.0 15.3 244 74-353 20-265 (377)
46 TIGR00886 2A0108 nitrite extru 99.9 1.4E-25 3.1E-30 199.4 17.3 256 72-352 29-295 (366)
47 PRK10473 multidrug efflux syst 99.9 2.3E-25 4.9E-30 199.9 18.2 239 76-353 34-274 (392)
48 PRK10504 putative transporter; 99.9 3.8E-25 8.2E-30 203.2 19.6 294 30-354 15-333 (471)
49 PRK03633 putative MFS family t 99.9 4.8E-25 1E-29 196.9 19.6 258 30-352 11-269 (381)
50 KOG0255 Synaptic vesicle trans 99.9 9.1E-25 2E-29 202.9 22.0 267 74-353 112-385 (521)
51 PRK10133 L-fucose transporter; 99.9 2.9E-25 6.4E-30 200.9 18.2 272 28-353 29-330 (438)
52 KOG0252 Inorganic phosphate tr 99.9 3.6E-26 7.8E-31 195.4 10.9 321 16-354 32-384 (538)
53 PRK12382 putative transporter; 99.9 2.1E-24 4.6E-29 193.6 22.8 232 74-353 45-284 (392)
54 PRK11273 glpT sn-glycerol-3-ph 99.9 4.1E-25 8.9E-30 201.5 18.3 250 76-346 59-317 (452)
55 PRK05122 major facilitator sup 99.9 7.9E-25 1.7E-29 196.8 19.8 232 74-353 45-284 (399)
56 KOG0253 Synaptic vesicle trans 99.9 4.4E-25 9.6E-30 183.4 15.3 276 71-352 104-415 (528)
57 TIGR00883 2A0106 metabolite-pr 99.9 1.4E-24 3.1E-29 194.7 19.3 244 77-352 27-289 (394)
58 TIGR00805 oat sodium-independe 99.9 1.9E-25 4.1E-30 209.4 13.9 266 72-348 60-397 (633)
59 TIGR00897 2A0118 polyol permea 99.9 2.6E-24 5.7E-29 193.4 20.5 241 76-351 44-290 (402)
60 PRK11195 lysophospholipid tran 99.9 1.6E-24 3.4E-29 193.9 18.6 241 76-352 34-275 (393)
61 PRK11043 putative transporter; 99.9 2E-24 4.4E-29 194.3 19.2 238 73-351 34-271 (401)
62 TIGR00899 2A0120 sugar efflux 99.9 1.9E-24 4.2E-29 192.7 18.3 240 73-353 26-270 (375)
63 TIGR00892 2A0113 monocarboxyla 99.9 2.7E-24 5.8E-29 195.9 19.5 255 73-345 47-303 (455)
64 TIGR00885 fucP L-fucose:H+ sym 99.9 1.6E-24 3.4E-29 194.5 16.5 267 29-352 7-303 (410)
65 TIGR00712 glpT glycerol-3-phos 99.9 2.9E-24 6.3E-29 195.2 18.2 254 76-348 57-317 (438)
66 PRK09874 drug efflux system pr 99.9 9.6E-24 2.1E-28 190.4 21.3 239 76-353 45-293 (408)
67 TIGR00896 CynX cyanate transpo 99.9 1.1E-23 2.3E-28 186.5 19.2 237 74-351 29-266 (355)
68 cd06174 MFS The Major Facilita 99.9 1.2E-23 2.7E-28 185.5 18.4 238 33-352 7-246 (352)
69 PRK11652 emrD multidrug resist 99.9 1.1E-23 2.4E-28 189.0 18.3 232 76-347 39-272 (394)
70 COG2223 NarK Nitrate/nitrite t 99.9 2.4E-23 5.1E-28 177.5 17.9 239 72-352 41-288 (417)
71 PRK10054 putative transporter; 99.9 4.5E-23 9.7E-28 184.7 16.2 239 74-353 37-279 (395)
72 PRK11010 ampG muropeptide tran 99.9 9.9E-23 2.1E-27 187.0 16.8 241 76-352 43-293 (491)
73 TIGR00901 2A0125 AmpG-related 99.9 1.3E-22 2.7E-27 179.7 15.7 247 75-353 18-280 (356)
74 PRK10489 enterobactin exporter 99.9 2.4E-23 5.3E-28 188.2 11.0 240 76-352 48-293 (417)
75 PRK15011 sugar efflux transpor 99.9 1.5E-21 3.3E-26 175.0 20.7 237 73-352 44-286 (393)
76 PRK11646 multidrug resistance 99.9 7.9E-22 1.7E-26 177.0 18.8 235 74-350 40-276 (400)
77 TIGR00902 2A0127 phenyl propri 99.9 4.3E-22 9.3E-27 177.8 16.7 238 76-354 35-276 (382)
78 PRK11902 ampG muropeptide tran 99.9 5.9E-22 1.3E-26 178.2 17.1 262 35-352 9-280 (402)
79 PRK11128 putative 3-phenylprop 99.9 8.1E-22 1.7E-26 176.1 16.8 237 76-353 35-275 (382)
80 TIGR00806 rfc RFC reduced fola 99.9 3.7E-21 8.1E-26 168.6 18.3 154 72-230 53-210 (511)
81 KOG2615 Permease of the major 99.9 8E-22 1.7E-26 165.1 13.0 254 76-346 64-325 (451)
82 KOG3764 Vesicular amine transp 99.9 2.2E-23 4.9E-28 175.3 3.5 276 27-347 23-335 (464)
83 TIGR00882 2A0105 oligosacchari 99.9 1.3E-20 2.8E-25 169.2 17.2 244 76-354 34-290 (396)
84 PRK08633 2-acyl-glycerophospho 99.9 2.3E-20 4.9E-25 189.3 20.2 248 78-353 45-304 (1146)
85 PRK06814 acylglycerophosphoeth 99.9 9.2E-21 2E-25 191.6 16.5 239 80-351 52-294 (1140)
86 PF06609 TRI12: Fungal trichot 99.8 1.2E-19 2.5E-24 165.4 20.2 138 78-219 76-213 (599)
87 COG0738 FucP Fucose permease [ 99.8 9E-20 2E-24 154.7 17.5 266 31-352 19-306 (422)
88 PRK09528 lacY galactoside perm 99.8 1.2E-19 2.5E-24 164.4 19.6 244 75-353 41-297 (420)
89 PRK10207 dipeptide/tripeptide 99.8 8.2E-19 1.8E-23 160.5 21.5 135 74-211 44-182 (489)
90 KOG2504 Monocarboxylate transp 99.8 8E-20 1.7E-24 166.1 14.7 270 72-349 73-364 (509)
91 PTZ00207 hypothetical protein; 99.8 3.2E-19 7E-24 163.5 17.7 150 72-228 54-213 (591)
92 COG2807 CynX Cyanate permease 99.8 3E-18 6.4E-23 143.5 20.0 237 72-350 39-275 (395)
93 TIGR00924 yjdL_sub1_fam amino 99.8 4.3E-18 9.3E-23 155.7 22.0 141 75-218 43-187 (475)
94 TIGR00889 2A0110 nucleoside tr 99.8 3.9E-19 8.4E-24 160.3 13.0 241 72-354 30-287 (418)
95 TIGR00792 gph sugar (Glycoside 99.8 5.7E-19 1.2E-23 160.8 11.7 246 74-353 29-292 (437)
96 PRK10642 proline/glycine betai 99.8 1E-17 2.2E-22 154.4 15.4 170 76-247 282-459 (490)
97 TIGR02718 sider_RhtX_FptX side 99.8 1E-17 2.3E-22 150.1 14.8 265 30-353 6-279 (390)
98 PF05977 MFS_3: Transmembrane 99.7 3.6E-17 7.8E-22 149.6 15.5 243 76-353 41-289 (524)
99 PRK09584 tppB putative tripept 99.7 3.6E-16 7.8E-21 143.9 19.8 138 74-214 51-192 (500)
100 TIGR00788 fbt folate/biopterin 99.7 8.6E-16 1.9E-20 140.2 14.2 258 75-353 56-323 (468)
101 TIGR01301 GPH_sucrose GPH fami 99.7 3.8E-15 8.3E-20 134.1 16.3 151 76-226 35-222 (477)
102 TIGR00880 2_A_01_02 Multidrug 99.6 7.9E-16 1.7E-20 117.0 9.6 136 86-224 4-140 (141)
103 KOG2563 Permease of the major 99.6 5.1E-15 1.1E-19 127.6 15.1 283 17-350 37-333 (480)
104 PF03825 Nuc_H_symport: Nucleo 99.6 4.9E-15 1.1E-19 131.7 15.3 244 76-354 33-279 (400)
105 PRK09669 putative symporter Ya 99.6 1.7E-15 3.7E-20 138.1 10.9 242 75-353 40-299 (444)
106 PF13347 MFS_2: MFS/sugar tran 99.6 4.8E-15 1E-19 134.5 12.9 244 76-354 33-296 (428)
107 PRK15462 dipeptide/tripeptide 99.6 2.2E-14 4.8E-19 129.8 16.8 136 76-214 41-180 (493)
108 PRK10429 melibiose:sodium symp 99.6 2.6E-15 5.7E-20 137.8 10.7 246 76-353 38-301 (473)
109 PRK15011 sugar efflux transpor 99.6 6.7E-14 1.5E-18 125.6 17.6 145 76-224 248-392 (393)
110 TIGR01299 synapt_SV2 synaptic 99.6 1.6E-14 3.5E-19 136.8 12.8 142 81-226 596-737 (742)
111 TIGR00889 2A0110 nucleoside tr 99.6 7.4E-14 1.6E-18 126.0 15.1 149 77-225 248-405 (418)
112 KOG2325 Predicted transporter/ 99.6 1.5E-13 3.3E-18 121.8 16.5 185 24-227 33-234 (488)
113 PF03137 OATP: Organic Anion T 99.5 6.4E-16 1.4E-20 141.9 -0.0 268 71-346 29-370 (539)
114 PRK09528 lacY galactoside perm 99.5 1E-13 2.2E-18 125.6 14.0 148 76-226 258-407 (420)
115 cd06174 MFS The Major Facilita 99.5 1.9E-13 4.1E-18 120.5 14.9 143 76-221 207-350 (352)
116 PRK05122 major facilitator sup 99.5 2.2E-13 4.7E-18 122.7 14.3 142 81-225 250-391 (399)
117 KOG4686 Predicted sugar transp 99.5 1.2E-14 2.6E-19 117.7 5.1 257 72-353 71-335 (459)
118 TIGR01272 gluP glucose/galacto 99.5 1.4E-13 3.1E-18 118.9 11.4 191 128-353 5-213 (310)
119 TIGR00890 2A0111 Oxalate/Forma 99.5 2.1E-13 4.5E-18 121.5 12.7 137 76-215 236-374 (377)
120 PRK11462 putative transporter; 99.5 4.8E-13 1E-17 122.1 15.2 240 76-352 41-297 (460)
121 TIGR00899 2A0120 sugar efflux 99.5 8.4E-13 1.8E-17 117.8 16.1 145 76-224 231-375 (375)
122 KOG3626 Organic anion transpor 99.5 2E-13 4.4E-18 125.9 12.0 262 72-347 124-458 (735)
123 PRK11551 putative 3-hydroxyphe 99.5 5.1E-13 1.1E-17 120.6 14.5 147 76-224 251-397 (406)
124 PF01306 LacY_symp: LacY proto 99.5 1.5E-14 3.2E-19 126.6 4.2 244 76-354 39-295 (412)
125 PF11700 ATG22: Vacuole efflux 99.5 4.3E-12 9.4E-17 115.1 19.4 247 79-352 69-353 (477)
126 PRK12382 putative transporter; 99.5 6.3E-13 1.4E-17 119.4 13.6 135 82-219 251-385 (392)
127 PRK09848 glucuronide transport 99.5 8.8E-13 1.9E-17 120.5 12.9 242 75-354 39-300 (448)
128 COG3104 PTR2 Dipeptide/tripept 99.4 1E-11 2.2E-16 109.3 18.4 143 75-220 56-203 (498)
129 TIGR00902 2A0127 phenyl propri 99.4 4E-12 8.6E-17 113.7 16.2 138 76-218 236-374 (382)
130 PRK03699 putative transporter; 99.4 3.7E-12 8E-17 114.4 15.2 144 76-223 237-380 (394)
131 PRK03893 putative sialic acid 99.4 1.1E-12 2.4E-17 121.5 11.7 133 76-211 307-441 (496)
132 PRK09874 drug efflux system pr 99.4 4.1E-12 8.9E-17 114.7 14.6 137 81-220 259-395 (408)
133 PF05631 DUF791: Protein of un 99.4 8E-12 1.7E-16 106.1 14.5 233 75-343 64-303 (354)
134 TIGR00892 2A0113 monocarboxyla 99.4 1.3E-12 2.9E-17 119.3 10.7 139 76-216 272-414 (455)
135 PRK03633 putative MFS family t 99.4 6.6E-12 1.4E-16 112.3 14.6 140 76-221 231-370 (381)
136 PRK09952 shikimate transporter 99.4 1.1E-11 2.3E-16 113.0 15.9 149 76-225 282-435 (438)
137 PF03209 PUCC: PUCC protein; 99.4 1.2E-11 2.5E-16 106.8 15.1 249 71-350 6-277 (403)
138 PRK10489 enterobactin exporter 99.4 4.9E-12 1.1E-16 114.6 13.6 148 76-226 255-403 (417)
139 COG2211 MelB Na+/melibiose sym 99.4 2.9E-12 6.2E-17 113.5 11.6 246 76-354 44-308 (467)
140 PRK03545 putative arabinose tr 99.4 2.2E-11 4.9E-16 109.2 16.8 140 76-220 237-377 (390)
141 PRK09556 uhpT sugar phosphate 99.4 1E-11 2.2E-16 114.1 14.6 145 76-220 290-446 (467)
142 TIGR00883 2A0106 metabolite-pr 99.4 3.4E-12 7.5E-17 114.4 11.3 133 76-211 251-389 (394)
143 TIGR00893 2A0114 d-galactonate 99.4 1E-11 2.3E-16 111.3 13.2 139 76-218 247-394 (399)
144 PRK09705 cynX putative cyanate 99.4 3.2E-11 7E-16 108.2 16.2 147 76-226 236-385 (393)
145 TIGR00879 SP MFS transporter, 99.4 1.7E-11 3.7E-16 112.9 14.4 148 76-226 315-474 (481)
146 PRK10077 xylE D-xylose transpo 99.3 4.2E-11 9.2E-16 110.5 16.9 151 76-226 302-461 (479)
147 TIGR00891 2A0112 putative sial 99.3 1.3E-11 2.8E-16 111.2 12.7 129 76-207 270-400 (405)
148 TIGR00897 2A0118 polyol permea 99.3 5.5E-11 1.2E-15 107.1 15.5 141 76-221 253-399 (402)
149 COG2270 Permeases of the major 99.3 7.1E-11 1.5E-15 101.8 14.5 248 78-354 56-324 (438)
150 PF11700 ATG22: Vacuole efflux 99.3 5.6E-11 1.2E-15 108.0 14.5 152 72-225 309-470 (477)
151 PRK11128 putative 3-phenylprop 99.3 1.4E-10 3E-15 103.8 15.9 136 76-216 236-372 (382)
152 TIGR00887 2A0109 phosphate:H+ 99.3 1.2E-10 2.5E-15 108.1 15.8 141 87-227 342-493 (502)
153 PF05977 MFS_3: Transmembrane 99.3 1E-10 2.2E-15 107.4 14.2 139 76-217 250-388 (524)
154 PRK10504 putative transporter; 99.3 5.4E-11 1.2E-15 109.5 12.4 119 76-194 293-414 (471)
155 PRK12307 putative sialic acid 99.2 2.6E-10 5.6E-15 103.7 15.9 125 76-203 262-388 (426)
156 COG2814 AraJ Arabinose efflux 99.2 3.5E-10 7.5E-15 98.4 15.2 143 74-221 241-384 (394)
157 PRK11010 ampG muropeptide tran 99.2 2.3E-10 5.1E-15 105.5 14.9 146 76-224 254-404 (491)
158 PRK10406 alpha-ketoglutarate t 99.2 2.8E-10 6.1E-15 103.5 15.1 146 76-224 275-425 (432)
159 TIGR00900 2A0121 H+ Antiporter 99.2 1.5E-10 3.2E-15 102.7 13.1 119 76-194 243-362 (365)
160 PRK11273 glpT sn-glycerol-3-ph 99.2 1.9E-10 4.2E-15 105.2 13.9 142 76-220 285-432 (452)
161 TIGR00882 2A0105 oligosacchari 99.2 2.7E-10 5.8E-15 102.5 14.6 140 76-218 250-390 (396)
162 KOG2816 Predicted transporter 99.2 1.3E-10 2.9E-15 104.4 12.0 239 88-353 70-313 (463)
163 PLN00028 nitrate transmembrane 99.2 2.1E-10 4.6E-15 105.4 13.4 143 76-223 284-433 (476)
164 TIGR02718 sider_RhtX_FptX side 99.2 6.7E-10 1.4E-14 99.7 16.3 139 76-217 239-385 (390)
165 TIGR00898 2A0119 cation transp 99.2 2.5E-10 5.4E-15 106.1 13.1 136 86-226 361-498 (505)
166 PF06813 Nodulin-like: Nodulin 99.2 1.2E-09 2.7E-14 89.8 15.5 149 72-225 29-184 (250)
167 COG2270 Permeases of the major 99.2 1.8E-10 3.8E-15 99.4 10.5 152 72-225 280-431 (438)
168 PRK11663 regulatory protein Uh 99.2 4.3E-10 9.2E-15 102.4 13.4 140 76-219 275-420 (434)
169 PRK15075 citrate-proton sympor 99.2 1.2E-09 2.7E-14 99.4 15.7 121 76-196 270-395 (434)
170 TIGR00895 2A0115 benzoate tran 99.1 3.7E-10 7.9E-15 101.5 11.4 117 76-192 281-397 (398)
171 PF01770 Folate_carrier: Reduc 99.1 1.2E-09 2.5E-14 95.6 13.9 269 75-347 35-314 (412)
172 PRK10213 nepI ribonucleoside t 99.1 2.6E-09 5.6E-14 95.9 16.2 134 76-214 248-382 (394)
173 PRK11646 multidrug resistance 99.1 1.1E-09 2.3E-14 98.6 13.6 138 78-215 241-380 (400)
174 TIGR00792 gph sugar (Glycoside 99.1 1.7E-09 3.7E-14 98.6 14.7 118 78-195 255-380 (437)
175 PRK08633 2-acyl-glycerophospho 99.1 1.5E-09 3.3E-14 110.8 15.3 136 76-213 264-400 (1146)
176 TIGR00896 CynX cyanate transpo 99.1 1.6E-09 3.4E-14 96.0 13.5 121 76-197 228-350 (355)
177 TIGR00712 glpT glycerol-3-phos 99.1 1.3E-09 2.9E-14 99.3 12.6 148 76-226 283-437 (438)
178 PRK15402 multidrug efflux syst 99.1 5.5E-09 1.2E-13 94.4 16.5 134 76-213 247-385 (406)
179 TIGR00711 efflux_EmrB drug res 99.1 9.1E-10 2E-14 101.8 11.1 119 76-194 287-409 (485)
180 TIGR01272 gluP glucose/galacto 99.0 4.1E-09 8.8E-14 91.2 13.2 128 75-208 173-300 (310)
181 PRK11195 lysophospholipid tran 99.0 9.1E-09 2E-13 92.4 16.0 133 76-211 237-370 (393)
182 KOG4686 Predicted sugar transp 99.0 4.1E-09 8.8E-14 86.1 12.0 149 72-222 292-442 (459)
183 PF01306 LacY_symp: LacY proto 99.0 2.6E-09 5.7E-14 93.9 11.9 147 76-225 255-403 (412)
184 KOG2504 Monocarboxylate transp 99.0 1E-09 2.3E-14 100.4 9.6 146 76-223 329-476 (509)
185 PRK06814 acylglycerophosphoeth 99.0 2.9E-09 6.4E-14 108.5 13.8 134 76-211 257-410 (1140)
186 COG2271 UhpC Sugar phosphate p 99.0 1.8E-09 4E-14 93.2 10.3 141 76-219 284-430 (448)
187 PRK10054 putative transporter; 99.0 2.4E-09 5.2E-14 96.2 11.5 147 76-226 240-388 (395)
188 PRK14995 methyl viologen resis 99.0 3E-09 6.5E-14 98.5 12.3 119 76-194 291-412 (495)
189 TIGR00901 2A0125 AmpG-related 99.0 3E-09 6.5E-14 94.3 11.6 104 76-179 240-355 (356)
190 PF03825 Nuc_H_symport: Nucleo 99.0 1.1E-08 2.5E-13 91.2 15.3 149 77-225 240-398 (400)
191 TIGR00894 2A0114euk Na(+)-depe 99.0 3.8E-09 8.2E-14 97.1 12.5 146 76-222 293-449 (465)
192 PRK10091 MFS transport protein 99.0 1.1E-08 2.4E-13 91.6 15.1 140 76-219 231-372 (382)
193 TIGR00710 efflux_Bcr_CflA drug 99.0 3.4E-08 7.4E-13 88.4 18.0 127 76-207 238-370 (385)
194 PRK11902 ampG muropeptide tran 99.0 1E-08 2.3E-13 92.4 14.6 138 76-220 241-387 (402)
195 TIGR00881 2A0104 phosphoglycer 99.0 1E-09 2.3E-14 97.8 7.6 127 76-205 248-379 (379)
196 TIGR02332 HpaX 4-hydroxyphenyl 99.0 4.4E-09 9.5E-14 95.0 11.5 134 76-211 275-409 (412)
197 TIGR00903 2A0129 major facilit 99.0 2.4E-08 5.1E-13 88.7 15.3 141 76-225 223-367 (368)
198 COG0477 ProP Permeases of the 99.0 1.1E-08 2.5E-13 88.1 12.8 133 80-213 39-175 (338)
199 PRK09848 glucuronide transport 98.9 2.3E-08 4.9E-13 91.5 14.2 119 76-194 260-387 (448)
200 TIGR00926 2A1704 Peptide:H+ sy 98.9 1.3E-07 2.8E-12 89.2 19.1 144 76-219 19-178 (654)
201 KOG0253 Synaptic vesicle trans 98.9 3.7E-09 7.9E-14 89.5 7.6 133 89-226 390-522 (528)
202 KOG0569 Permease of the major 98.9 1.9E-07 4.1E-12 84.0 19.1 147 76-226 301-458 (485)
203 PF03092 BT1: BT1 family; Int 98.9 7.6E-09 1.6E-13 93.6 8.9 148 72-223 17-175 (433)
204 PRK10429 melibiose:sodium symp 98.9 2.9E-08 6.2E-13 91.4 12.4 117 78-194 264-392 (473)
205 TIGR00788 fbt folate/biopterin 98.9 1.6E-08 3.4E-13 92.8 10.3 151 74-224 282-447 (468)
206 PRK10473 multidrug efflux syst 98.9 9.4E-08 2E-12 85.9 15.2 114 76-194 235-348 (392)
207 PRK10133 L-fucose transporter; 98.9 3.5E-08 7.7E-13 89.8 12.3 130 75-210 290-420 (438)
208 COG2807 CynX Cyanate permease 98.8 2E-07 4.4E-12 79.1 15.7 142 76-220 239-382 (395)
209 PF13347 MFS_2: MFS/sugar tran 98.8 6.6E-08 1.4E-12 87.9 14.1 116 80-195 260-384 (428)
210 PRK11102 bicyclomycin/multidru 98.8 3E-07 6.5E-12 82.1 17.3 114 76-190 226-344 (377)
211 PF07690 MFS_1: Major Facilita 98.8 5.3E-08 1.2E-12 85.9 12.2 111 76-186 238-352 (352)
212 COG2223 NarK Nitrate/nitrite t 98.8 5.3E-08 1.2E-12 84.3 10.9 138 76-220 250-398 (417)
213 PRK11043 putative transporter; 98.8 3.9E-07 8.6E-12 82.1 17.2 118 76-194 234-356 (401)
214 PRK15034 nitrate/nitrite trans 98.8 1.8E-07 4E-12 84.3 14.4 133 86-220 292-451 (462)
215 PRK09669 putative symporter Ya 98.7 5.5E-07 1.2E-11 82.3 15.8 115 81-195 265-388 (444)
216 TIGR00924 yjdL_sub1_fam amino 98.7 2.5E-07 5.5E-12 85.1 13.4 135 82-219 314-464 (475)
217 PRK09584 tppB putative tripept 98.7 2.5E-07 5.4E-12 85.6 12.5 135 82-216 318-472 (500)
218 KOG3764 Vesicular amine transp 98.7 3.8E-08 8.3E-13 84.3 5.7 140 76-218 302-449 (464)
219 PRK11652 emrD multidrug resist 98.6 2.7E-06 5.8E-11 76.5 16.7 118 76-194 239-359 (394)
220 KOG2532 Permease of the major 98.6 1.9E-07 4.2E-12 84.6 9.0 151 50-222 281-446 (466)
221 TIGR00769 AAA ADP/ATP carrier 98.6 5.1E-06 1.1E-10 75.2 17.6 117 78-194 41-190 (472)
222 TIGR00885 fucP L-fucose:H+ sym 98.6 8E-07 1.7E-11 80.2 12.4 128 78-208 267-397 (410)
223 COG2211 MelB Na+/melibiose sym 98.6 2E-06 4.4E-11 76.9 14.6 120 76-195 268-396 (467)
224 KOG3098 Uncharacterized conser 98.6 3.2E-06 6.9E-11 75.6 15.5 108 86-194 56-163 (461)
225 PF05978 UNC-93: Ion channel r 98.5 2.7E-06 5.8E-11 64.8 11.8 117 77-194 34-150 (156)
226 PF06779 DUF1228: Protein of u 98.5 4.6E-07 9.9E-12 60.6 6.2 67 71-137 18-84 (85)
227 KOG3762 Predicted transporter 98.5 1.8E-07 3.9E-12 83.3 4.7 142 76-220 402-544 (618)
228 TIGR00886 2A0108 nitrite extru 98.4 1.5E-06 3.3E-11 77.2 9.8 105 76-181 257-365 (366)
229 PRK10207 dipeptide/tripeptide 98.4 1.7E-06 3.8E-11 79.7 10.2 138 82-219 311-472 (489)
230 PF03209 PUCC: PUCC protein; 98.4 2.2E-05 4.7E-10 68.5 15.8 147 72-218 236-393 (403)
231 KOG0252 Inorganic phosphate tr 98.3 1.3E-06 2.9E-11 76.5 6.8 137 91-227 359-502 (538)
232 KOG0254 Predicted transporter 98.3 7E-05 1.5E-09 69.8 18.6 147 76-226 326-487 (513)
233 PRK11462 putative transporter; 98.3 3.7E-05 8E-10 70.6 15.4 115 80-194 263-386 (460)
234 COG0738 FucP Fucose permease [ 98.3 1.1E-05 2.5E-10 69.8 10.8 125 76-206 268-392 (422)
235 PF06963 FPN1: Ferroportin1 (F 98.2 0.00013 2.8E-09 65.5 17.6 258 83-350 41-325 (432)
236 PRK15403 multidrug efflux syst 98.2 0.00011 2.5E-09 66.5 16.0 118 76-194 250-372 (413)
237 KOG0637 Sucrose transporter an 98.2 8.4E-06 1.8E-10 71.6 8.0 117 76-192 63-202 (498)
238 PF00083 Sugar_tr: Sugar (and 98.1 5.5E-08 1.2E-12 89.1 -7.0 136 88-226 294-440 (451)
239 TIGR01301 GPH_sucrose GPH fami 98.1 0.00011 2.4E-09 67.0 13.8 143 83-226 308-475 (477)
240 PF12832 MFS_1_like: MFS_1 lik 98.0 1.7E-05 3.7E-10 52.6 5.9 45 76-120 31-75 (77)
241 PF06609 TRI12: Fungal trichot 98.0 4.3E-05 9.4E-10 71.0 10.0 149 80-228 349-559 (599)
242 PF03219 TLC: TLC ATP/ADP tran 98.0 0.0017 3.7E-08 59.4 19.3 117 78-194 56-205 (491)
243 PF12832 MFS_1_like: MFS_1 lik 97.9 1.3E-05 2.8E-10 53.2 2.8 57 297-353 14-70 (77)
244 KOG2816 Predicted transporter 97.8 0.00038 8.2E-09 63.3 12.7 122 72-194 269-391 (463)
245 KOG2533 Permease of the major 97.8 8.1E-05 1.7E-09 68.1 8.1 131 76-208 305-441 (495)
246 KOG0255 Synaptic vesicle trans 97.8 0.00034 7.4E-09 65.5 12.5 135 89-227 359-497 (521)
247 PRK15462 dipeptide/tripeptide 97.7 0.00084 1.8E-08 61.6 13.3 135 81-215 309-469 (493)
248 PF02487 CLN3: CLN3 protein; 97.7 0.00046 1E-08 61.0 10.3 137 81-224 60-197 (402)
249 PF00854 PTR2: POT family; In 97.6 0.00025 5.4E-09 63.3 7.9 108 111-221 2-121 (372)
250 KOG2615 Permease of the major 97.5 0.0002 4.4E-09 61.7 6.2 122 73-194 290-413 (451)
251 KOG4332 Predicted sugar transp 97.5 0.00034 7.4E-09 57.4 6.5 86 76-162 68-154 (454)
252 KOG3810 Micronutrient transpor 97.4 0.00039 8.5E-09 59.1 6.4 246 92-348 54-301 (433)
253 PTZ00207 hypothetical protein; 97.4 0.0026 5.6E-08 59.7 11.9 134 85-220 396-549 (591)
254 COG3202 ATP/ADP translocase [E 97.3 0.023 4.9E-07 51.2 16.5 118 77-194 58-209 (509)
255 KOG1237 H+/oligopeptide sympor 97.3 0.017 3.7E-07 54.2 16.1 140 76-218 69-240 (571)
256 KOG3574 Acetyl-CoA transporter 97.1 0.01 2.2E-07 51.5 11.7 137 30-189 36-189 (510)
257 PF03092 BT1: BT1 family; Int 97.0 0.0017 3.8E-08 59.0 6.8 151 76-226 251-416 (433)
258 PRK03612 spermidine synthase; 97.0 0.06 1.3E-06 50.2 16.8 117 76-194 46-170 (521)
259 PF06963 FPN1: Ferroportin1 (F 96.8 0.02 4.4E-07 51.6 11.8 119 76-194 289-417 (432)
260 COG3104 PTR2 Dipeptide/tripept 96.8 0.027 5.8E-07 50.9 12.0 139 80-218 324-482 (498)
261 PF13000 Acatn: Acetyl-coenzym 96.8 0.023 4.9E-07 51.3 11.4 52 142-193 127-178 (544)
262 TIGR00939 2a57 Equilibrative N 96.6 0.037 8E-07 50.3 12.1 91 132-227 105-200 (437)
263 KOG1479 Nucleoside transporter 96.6 0.16 3.5E-06 45.0 15.4 91 132-227 116-208 (406)
264 KOG3762 Predicted transporter 96.4 0.0036 7.9E-08 56.7 4.1 79 32-130 18-97 (618)
265 PF02487 CLN3: CLN3 protein; 96.2 0.037 8E-07 49.2 9.2 113 78-194 279-396 (402)
266 KOG2563 Permease of the major 96.1 0.078 1.7E-06 47.4 10.5 149 76-225 297-452 (480)
267 KOG3098 Uncharacterized conser 96.0 0.31 6.8E-06 44.3 13.9 104 86-190 285-409 (461)
268 TIGR00805 oat sodium-independe 95.2 0.016 3.4E-07 55.6 3.3 68 287-354 37-104 (633)
269 TIGR00806 rfc RFC reduced fola 94.7 0.058 1.3E-06 49.0 5.1 55 300-354 43-98 (511)
270 KOG2325 Predicted transporter/ 94.0 0.054 1.2E-06 49.3 3.5 75 134-211 388-463 (488)
271 PF06779 DUF1228: Protein of u 93.7 0.064 1.4E-06 36.1 2.6 51 302-352 11-61 (85)
272 PF06813 Nodulin-like: Nodulin 93.0 0.1 2.3E-06 43.4 3.3 60 294-354 13-72 (250)
273 PF05631 DUF791: Protein of un 92.9 0.16 3.6E-06 44.1 4.5 43 310-352 61-103 (354)
274 KOG1330 Sugar transporter/spin 92.7 0.21 4.6E-06 44.9 4.9 55 300-354 50-104 (493)
275 KOG0637 Sucrose transporter an 91.3 0.39 8.5E-06 43.2 5.0 116 81-196 333-471 (498)
276 PF01733 Nucleoside_tran: Nucl 91.1 0.064 1.4E-06 46.5 0.0 82 141-227 5-88 (309)
277 KOG1479 Nucleoside transporter 90.2 4.6 9.9E-05 36.1 10.5 113 78-190 280-400 (406)
278 KOG3097 Predicted membrane pro 89.8 7.9 0.00017 33.6 11.1 73 89-162 67-139 (390)
279 KOG4332 Predicted sugar transp 89.4 3.8 8.2E-05 34.5 8.8 133 81-217 283-425 (454)
280 TIGR00939 2a57 Equilibrative N 89.1 3.8 8.3E-05 37.5 9.7 111 81-192 308-431 (437)
281 PF07672 MFS_Mycoplasma: Mycop 88.4 1.2 2.7E-05 36.9 5.4 58 165-222 2-61 (267)
282 PF01770 Folate_carrier: Reduc 88.0 9.4 0.0002 34.4 11.0 98 78-175 283-382 (412)
283 KOG3880 Predicted small molecu 87.6 1.8 3.9E-05 37.0 5.9 114 80-193 288-402 (409)
284 KOG3880 Predicted small molecu 84.9 1 2.2E-05 38.5 3.2 134 82-221 64-197 (409)
285 COG5336 Uncharacterized protei 83.9 6.8 0.00015 27.4 6.3 45 81-125 43-88 (116)
286 TIGR00769 AAA ADP/ATP carrier 82.6 41 0.00089 31.2 13.2 71 141-214 274-345 (472)
287 COG4262 Predicted spermidine s 81.9 17 0.00037 31.9 9.3 85 76-160 39-132 (508)
288 KOG2881 Predicted membrane pro 81.3 14 0.00029 30.7 8.1 20 336-355 258-277 (294)
289 TIGR00880 2_A_01_02 Multidrug 80.9 7.9 0.00017 28.1 6.7 47 79-125 86-132 (141)
290 PF06912 DUF1275: Protein of u 75.3 42 0.0009 27.1 12.2 17 87-103 53-69 (209)
291 PF01733 Nucleoside_tran: Nucl 74.0 0.98 2.1E-05 39.2 -0.1 108 84-191 186-306 (309)
292 PF07672 MFS_Mycoplasma: Mycop 73.9 53 0.0011 27.6 10.1 104 81-185 142-255 (267)
293 PF03219 TLC: TLC ATP/ADP tran 66.3 1.2E+02 0.0025 28.5 13.5 70 141-213 290-360 (491)
294 PF03137 OATP: Organic Anion T 65.2 2.1 4.5E-05 40.3 0.0 68 287-354 7-74 (539)
295 KOG3810 Micronutrient transpor 63.8 46 0.00099 29.5 7.6 95 82-176 273-369 (433)
296 COG1268 BioY Uncharacterized c 60.5 45 0.00098 26.3 6.5 24 86-109 88-111 (184)
297 COG0477 ProP Permeases of the 60.3 18 0.00038 30.3 5.0 52 301-352 20-73 (338)
298 PF13000 Acatn: Acetyl-coenzym 60.1 63 0.0014 30.1 8.2 60 135-194 407-466 (544)
299 PF02632 BioY: BioY family; I 56.7 61 0.0013 24.6 6.6 42 86-127 59-100 (148)
300 PF07760 DUF1616: Protein of u 55.1 1.3E+02 0.0027 25.9 9.1 57 136-193 22-78 (287)
301 PRK11469 hypothetical protein; 54.5 85 0.0018 25.0 7.3 45 81-125 135-180 (188)
302 COG4769 Predicted membrane pro 53.7 21 0.00045 27.3 3.5 51 89-145 82-132 (181)
303 KOG4830 Predicted sugar transp 52.8 21 0.00046 30.0 3.8 50 301-350 35-93 (412)
304 KOG1237 H+/oligopeptide sympor 51.3 24 0.00053 33.6 4.5 65 132-196 457-521 (571)
305 PF11299 DUF3100: Protein of u 51.2 12 0.00025 30.5 2.0 99 71-191 130-228 (241)
306 TIGR03644 marine_trans_1 proba 50.3 1.4E+02 0.003 27.2 8.8 30 160-189 315-344 (404)
307 KOG3626 Organic anion transpor 49.6 38 0.00082 33.2 5.4 50 75-124 423-475 (735)
308 KOG3574 Acetyl-CoA transporter 46.9 54 0.0012 29.5 5.5 121 74-194 294-430 (510)
309 PF11947 DUF3464: Protein of u 46.4 1.3E+02 0.0028 23.0 7.2 52 131-185 95-146 (153)
310 PF09527 ATPase_gene1: Putativ 45.7 66 0.0014 19.3 5.9 36 87-122 7-43 (55)
311 PF10785 NADH-u_ox-rdase: NADH 45.0 96 0.0021 21.0 5.7 43 91-133 29-78 (86)
312 PF02694 UPF0060: Uncharacteri 42.5 47 0.001 23.4 3.6 50 80-129 54-103 (107)
313 TIGR00926 2A1704 Peptide:H+ sy 42.5 61 0.0013 31.6 5.8 62 132-193 564-625 (654)
314 PRK03612 spermidine synthase; 41.1 3.2E+02 0.0069 25.9 12.4 33 79-111 53-85 (521)
315 PF00909 Ammonium_transp: Ammo 40.6 2.8E+02 0.0061 25.1 9.8 48 143-190 280-327 (399)
316 PF07857 DUF1632: CEO family ( 39.6 1.7E+02 0.0037 24.6 7.2 23 201-223 114-136 (254)
317 PF02990 EMP70: Endomembrane p 38.8 35 0.00076 32.2 3.5 75 269-348 248-327 (521)
318 KOG1287 Amino acid transporter 38.2 3.4E+02 0.0073 25.3 10.1 76 115-190 338-413 (479)
319 PRK02237 hypothetical protein; 38.0 85 0.0018 22.2 4.3 50 80-129 56-105 (109)
320 PRK14229 camphor resistance pr 37.0 1.5E+02 0.0033 21.0 7.9 48 116-163 32-79 (108)
321 COG2119 Predicted membrane pro 36.6 1.7E+02 0.0036 23.2 6.1 40 86-125 140-179 (190)
322 PF06645 SPC12: Microsomal sig 36.0 1.3E+02 0.0028 19.8 6.5 32 122-153 27-58 (76)
323 PRK10263 DNA translocase FtsK; 35.0 2.1E+02 0.0045 30.4 8.2 14 181-194 143-156 (1355)
324 PRK04201 zinc transporter ZupT 34.2 2.9E+02 0.0062 23.4 9.7 14 104-117 175-188 (265)
325 KOG3312 Predicted membrane pro 32.0 88 0.0019 23.4 3.8 31 219-249 27-57 (186)
326 TIGR02230 ATPase_gene1 F0F1-AT 30.8 1.9E+02 0.0041 20.3 5.9 34 89-122 51-85 (100)
327 TIGR01667 YCCS_YHJK integral m 29.9 5.7E+02 0.012 25.4 11.4 42 107-148 54-96 (701)
328 KOG1277 Endosomal membrane pro 29.4 48 0.001 30.1 2.6 15 269-283 279-293 (593)
329 PF13493 DUF4118: Domain of un 29.4 94 0.002 21.6 3.7 25 86-110 81-105 (105)
330 PF11298 DUF3099: Protein of u 29.2 1.7E+02 0.0036 19.1 5.1 61 102-166 9-69 (73)
331 PF05978 UNC-93: Ion channel r 28.4 62 0.0013 24.8 2.8 33 322-354 41-73 (156)
332 TIGR00836 amt ammonium transpo 28.4 2.5E+02 0.0055 25.5 7.0 46 144-189 286-331 (403)
333 PF07456 Hpre_diP_synt_I: Hept 27.5 2.4E+02 0.0051 21.5 5.6 51 87-143 68-118 (148)
334 PF05255 UPF0220: Uncharacteri 27.5 3E+02 0.0064 21.4 7.6 63 161-223 14-79 (166)
335 KOG2927 Membrane component of 26.0 50 0.0011 28.8 2.0 20 173-192 218-237 (372)
336 PF12273 RCR: Chitin synthesis 25.9 22 0.00048 26.2 -0.1 14 202-215 1-14 (130)
337 PF11833 DUF3353: Protein of u 25.9 3.1E+02 0.0067 22.0 6.3 28 167-194 139-166 (194)
338 PF11151 DUF2929: Protein of u 25.9 1.7E+02 0.0036 18.0 5.3 44 179-225 12-55 (57)
339 TIGR01666 YCCS hypothetical me 25.0 6.9E+02 0.015 24.8 11.9 48 101-148 44-96 (704)
340 PF01405 PsbT: Photosystem II 24.9 1E+02 0.0022 15.9 2.2 9 219-227 20-28 (29)
341 COG0861 TerC Membrane protein 24.8 4.1E+02 0.0088 22.4 7.1 56 147-207 30-85 (254)
342 PF11085 YqhR: Conserved membr 24.6 3.4E+02 0.0074 21.2 10.0 99 32-149 37-150 (173)
343 COG3086 RseC Positive regulato 24.6 3.1E+02 0.0068 20.7 6.0 50 73-122 65-115 (150)
344 PRK14230 camphor resistance pr 23.8 2.9E+02 0.0063 20.0 7.6 50 114-163 34-83 (119)
345 PF06123 CreD: Inner membrane 23.2 4.5E+02 0.0097 24.2 7.6 19 113-131 329-347 (430)
346 KOG3097 Predicted membrane pro 22.7 1.5E+02 0.0032 26.2 4.1 45 76-120 306-350 (390)
347 PRK11715 inner membrane protei 22.3 4.4E+02 0.0096 24.3 7.3 18 168-185 356-373 (436)
348 TIGR00844 c_cpa1 na(+)/h(+) an 21.4 6.6E+02 0.014 25.4 8.6 35 174-211 106-140 (810)
349 COG1288 Predicted membrane pro 21.0 4E+02 0.0086 24.6 6.5 30 198-227 215-246 (481)
350 PF03596 Cad: Cadmium resistan 20.0 4.5E+02 0.0097 21.0 6.1 35 76-110 122-165 (191)
No 1
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-35 Score=259.61 Aligned_cols=332 Identities=31% Similarity=0.554 Sum_probs=272.9
Q ss_pred CCCCChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHH
Q 041698 16 PGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALL 95 (355)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~ 95 (355)
++++.++...++.+++++.+-+||+.+..++. ....+++.++-+.++.+.+.-++.+ ....+.+++++.+|.++
T Consensus 2 ~~~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap---~~~i~~f~n~t~~~r~g~~~s~~~~---~~lwS~~vs~f~iG~~~ 75 (485)
T KOG0569|consen 2 KPKLTRRLLLAVIVATLGSFQFGYNIGVVNAP---QELIKSFINETLIERYGLPLSDSTL---DLLWSLIVSIFFIGGMI 75 (485)
T ss_pred CCCccHHHHHHHHHHHHhchhhhhhheecCch---HHHHHHHHHHHHHHhcCCCCChHHH---HHHHHHHHHHHHHHHHH
Confidence 34566677777888888889999999988755 3555666544444443322222111 23577888999999999
Q ss_pred HHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhh
Q 041698 96 SSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF---AQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNI 172 (355)
Q Consensus 96 ~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~ 172 (355)
|+++.+.++||+|||..++++.++..++.++..+ .+++.+++++|++.|+..|......+.|+.|..|++.||....
T Consensus 76 Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~ 155 (485)
T KOG0569|consen 76 GSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGT 155 (485)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHH
Confidence 9999999999999999999999999998877765 4789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHh-cCChHHHHHHHHHHhCCCcc
Q 041698 173 GFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIE-RGRHEEAREELRKVRGVNDV 251 (355)
Q Consensus 173 ~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 251 (355)
+...+..+|.+++..++..-.-.+ ...|++.+....+++++.++...++||||||+.. +++.+||++.++..++.++.
T Consensus 156 ~~~~~~~~g~ll~~~~~l~~ilGt-~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~ 234 (485)
T KOG0569|consen 156 LLQIGVVIGILLGQVLGLPSLLGT-EDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDV 234 (485)
T ss_pred HHHHHHHHHHHHHHHHccHHhcCC-CcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcc
Confidence 999999999999977665432111 3579999999999999999999999999999988 89999999999999998876
Q ss_pred HHHHHHHHHHHHHh---hccccchhhhhcc-CchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHH
Q 041698 252 EEEFNDLVAASEAS---RQVEHPWKNLLQK-KYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVIT 327 (355)
Q Consensus 252 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 327 (355)
+.+.++..++.+.+ ++++.++.+++++ ..+++....+.+....++.+.+...+|...++++.|++..++.+.....
T Consensus 235 ~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~ 314 (485)
T KOG0569|consen 235 EAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGI 314 (485)
T ss_pred hhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 66655544433332 2245678888875 4456667777888888999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhheecccCCccccccC
Q 041698 328 GIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 328 ~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
++..++.++++.++.||.|||++++.+
T Consensus 315 g~v~~~~t~~~~~lid~~gRRpLll~~ 341 (485)
T KOG0569|consen 315 GIVNLLSTLVSPFLIDRLGRRPLLLIS 341 (485)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 999999999999999999999998764
No 2
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=100.00 E-value=5.7e-33 Score=255.62 Aligned_cols=320 Identities=29% Similarity=0.554 Sum_probs=241.7
Q ss_pred CChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHH
Q 041698 19 LTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSL 98 (355)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~ 98 (355)
..+.....+.++.++.+.++||.+.+++. .|.+.+.+. +....+++++..+.+++.+++.++..++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----------~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~ 73 (479)
T PRK10077 6 NSSYIFSITLVATLGGLLFGYDTAVISGT--VESLNTVFV----------APQNLSESAANSLLGFCVASALIGCIIGGA 73 (479)
T ss_pred cchHHHHHHHHHHHHHHhcCcccceehHh--HHHHHHHhc----------ccccccccCChhHHHHHHHHHHHHHHHHHH
Confidence 34556667777888999999999999887 677777773 234556789999999999999999999999
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh------------hHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCc
Q 041698 99 VASRVTRQFGRKLSMFFGGILFLAGALLNGFA------------QAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRF 166 (355)
Q Consensus 99 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~ 166 (355)
++|+++||+|||++++++.++.+++.+.++++ +.++.++++|+++|++.|...+...++++|++|+++
T Consensus 74 ~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~ 153 (479)
T PRK10077 74 LGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI 153 (479)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh
Confidence 99999999999999999999999998887763 336778999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhcC-----CCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHH
Q 041698 167 RGALNIGFQLSITVGILIANVLNYFFNKI-----HGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREE 241 (355)
Q Consensus 167 r~~~~~~~~~~~~~G~~~~~~i~~~~~~~-----~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 241 (355)
|++++++...+..+|.++++.++..+... .+.++||+.|++.+++.++..+..+++||+|+++..+++.+++.+.
T Consensus 154 rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~ 233 (479)
T PRK10077 154 RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGI 233 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHH
Confidence 99999999999999999998887765421 1246899999988888777666677889999998778887777766
Q ss_pred HHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHH
Q 041698 242 LRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASL 321 (355)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 321 (355)
.++..+.++.+...++..+..+.++. .....+. ..............+.+....+...++.|.+.++.|++.....
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~ 309 (479)
T PRK10077 234 LRKIMGNTLATQALQEIKHSLDHGRK---TGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIAL 309 (479)
T ss_pred HHHHcCChhHHHHHHHHHHHHHHhhh---hhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHH
Confidence 66655443332222222111111110 0111111 1111112222233344444555667788888888999888777
Q ss_pred HHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 322 MSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 322 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
......++..+++.+++++++||+|||++++.+
T Consensus 310 ~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~ 342 (479)
T PRK10077 310 LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIG 342 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHh
Confidence 888888899999999999999999999887654
No 3
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=100.00 E-value=8.1e-34 Score=261.89 Aligned_cols=321 Identities=19% Similarity=0.246 Sum_probs=231.4
Q ss_pred CCCChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHH
Q 041698 17 GNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLS 96 (355)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~ 96 (355)
.+..+.++.++.++.++.+.++||.+..+.+ .|.+.+++. ..+.+.+..+.+++.+.+.+++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~--~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ig~~ig 72 (502)
T TIGR00887 8 APFGWQHFRAIVIAGVGFFTDSYDLFCISLV--TKMLGYVYY-------------HGKGPLPSSVSAAVNGSASIGTLAG 72 (502)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhc-------------cCcccchHHHHHHHHHHHHHHHHHH
Confidence 4555677778888899999999999998877 444433321 0122556778899999999999999
Q ss_pred HHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccch
Q 041698 97 SLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQA------IWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGAL 170 (355)
Q Consensus 97 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~ 170 (355)
+++.|+++||+|||+++.++.++..+++++++++++ ++.++++|+++|++.|...+....++.|++|+++|+++
T Consensus 73 ~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~ 152 (502)
T TIGR00887 73 QLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAM 152 (502)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHH
Confidence 999999999999999999999999999999888765 78999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcC--------------------CCccchHHHHhhhHHHHHHHHHHhccccCChhHHH
Q 041698 171 NIGFQLSITVGILIANVLNYFFNKI--------------------HGGWGWRLSLGGAMVPALIITVGSMILPDTPNSII 230 (355)
Q Consensus 171 ~~~~~~~~~~G~~~~~~i~~~~~~~--------------------~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 230 (355)
+++......+|.++++.++..+... ..+++||+++.+.++++++..+..+++||+|+|+.
T Consensus 153 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~ 232 (502)
T TIGR00887 153 MAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTA 232 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999888765320 01257999999888888877777788999999998
Q ss_pred hcCChH-HHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCc---hhHHHHHHHHHHHHHcccccchHhcH
Q 041698 231 ERGRHE-EAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKY---RPHLTMAVLIPFFQQFTGINVIMFYA 306 (355)
Q Consensus 231 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (355)
.+++.+ ++.+.+.+....+..++ .++..+.+++++..+.+++++++... ..+..+.....++.....++....+.
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 311 (502)
T TIGR00887 233 DVAKDVEQAASDMSAVLQVKIEAE-PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQ 311 (502)
T ss_pred HhCcchHHHHHHHHHHhccccccC-cccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 887764 45555555543221111 01111000011111234666665321 11222322233333333344556678
Q ss_pred HHHHHhcCCCCcHHHH------------HHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 307 PVLFNTIGFGSDASLM------------SAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 307 ~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
|.++++.|++...++. ......++.+++.+++++++||+|||++++.
T Consensus 312 p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~ 370 (502)
T TIGR00887 312 KVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLM 370 (502)
T ss_pred HHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHH
Confidence 8888888886543211 2334455677788999999999999998754
No 4
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=100.00 E-value=3.8e-32 Score=250.87 Aligned_cols=321 Identities=40% Similarity=0.726 Sum_probs=258.0
Q ss_pred CCChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCc--chhHHHHHHHHHHHHH
Q 041698 18 NLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDS--ETLTMFTSSLYLAALL 95 (355)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~s~~~l~~~~ 95 (355)
..............++.+..+++ +..+....+....++....... ..+. .+.+++.++..++..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~fg~~-g~~g~~s~~~~~~~~~~~~~~~------------~~~~~~~~~s~~~s~~~lga~~ 104 (513)
T KOG0254|consen 38 MISPFVILLALVAALGGLLFGYD-GDIGGISGALDFLQRFASLYDL------------STGEYSVRQGLLTSILNLGALV 104 (513)
T ss_pred cCceehHHHHHHHHHHHHHhCcc-cccccchhhHHHHHhccccccc------------ccchhHHHHHHHHHHHHHHHHH
Confidence 34456677788888899999998 4333333334444443221111 1122 5679999999999999
Q ss_pred HHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHH
Q 041698 96 SSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQ 175 (355)
Q Consensus 96 ~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~ 175 (355)
++++.|+++|++|||+.++++.+++.++.+++++++|+++++++|+++|+|.|......+.|++|..|++.||...+..+
T Consensus 105 g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~ 184 (513)
T KOG0254|consen 105 GSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQ 184 (513)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCC--CccHH
Q 041698 176 LSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGV--NDVEE 253 (355)
Q Consensus 176 ~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 253 (355)
....+|..++..++....+. . ++||..+.+..+++++..+..+++||+|+|+.++++.+++++.+.++... .+.+.
T Consensus 185 l~~~~Gi~~~~~~~~~~~~~-~-~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~ 262 (513)
T KOG0254|consen 185 LFITIGILLGYCINYGTSKV-Y-AGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEV 262 (513)
T ss_pred HHHHHHHHHHHHHhhhhccC-C-ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHH
Confidence 99999999996666665542 1 58999999999998888877888999999999999999999999999883 34444
Q ss_pred HHHHHHHHHHHhh---ccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHH
Q 041698 254 EFNDLVAASEASR---QVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIV 330 (355)
Q Consensus 254 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 330 (355)
+.++.......+. ..+..+.+++++...++......+..+.++++.+...+|.+.+++..|.+... .......++.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v 341 (513)
T KOG0254|consen 263 ELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVV 341 (513)
T ss_pred HHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHH
Confidence 4444431111111 11224667776556677777888899999999999999999999998887655 6667778888
Q ss_pred HHHHhhhhhheecccCCccccccC
Q 041698 331 NVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 331 ~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
.+++.+++..+.||+|||++++.|
T Consensus 342 ~~~~t~~~~~lvd~~gRr~lll~s 365 (513)
T KOG0254|consen 342 NFLGTLVATYLVDRFGRRKLLLFG 365 (513)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHh
Confidence 999999999999999999998865
No 5
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=100.00 E-value=1.4e-32 Score=258.16 Aligned_cols=210 Identities=21% Similarity=0.286 Sum_probs=186.2
Q ss_pred ChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHh
Q 041698 20 TPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLV 99 (355)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~ 99 (355)
.+..+.+++++.++.+.++++...++.+ +|.+.+++ +++..+.+++.++++++.++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~i--lp~i~~~~------------------gls~~~~g~l~s~~~lG~iiG~li 221 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFV--LPSAEKDL------------------CIPDSGKGMLGLIVYLGMMVGAFF 221 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888889999998887766 66666555 889999999999999999999999
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHH
Q 041698 100 ASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSIT 179 (355)
Q Consensus 100 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 179 (355)
+|+++||+|||++++++.++.++++++++++++++.++++|++.|++.|+..+...+++.|++|+++|++.+++...+..
T Consensus 222 ~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~ 301 (742)
T TIGR01299 222 WGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWM 301 (742)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCC----------ccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCCC
Q 041698 180 VGILIANVLNYFFNKIHG----------GWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVN 249 (355)
Q Consensus 180 ~G~~~~~~i~~~~~~~~~----------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (355)
+|.++++.++..+....+ ..+||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.++++...+
T Consensus 302 iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n 381 (742)
T TIGR01299 302 IGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTN 381 (742)
T ss_pred HHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 999999988776653111 2479999999888887777777889999999999999999999999887655
No 6
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=100.00 E-value=3.2e-31 Score=243.87 Aligned_cols=320 Identities=38% Similarity=0.682 Sum_probs=238.0
Q ss_pred CChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHH
Q 041698 19 LTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSL 98 (355)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~ 98 (355)
..+..+..++++.++.+..+++...++.. ++....++.-+. +.+.+.+..+.+++.+++.++..++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~ 89 (481)
T TIGR00879 22 TYWKVALLSLIAAIGGLMFGYDTGVIGGA--LALPAFEFKFTS----------ANSDSYSSSLWGLVVSIFLVGGFIGAL 89 (481)
T ss_pred ccHHHHHHHHHHHHHHHhcccccchhhhh--hhcHHHHHhcCC----------cccCCCChhHHHHHHHHHHHHHHHHHH
Confidence 34555556666677778889998888776 455554442111 112246789999999999999999999
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHH
Q 041698 99 VASRVTRQFGRKLSMFFGGILFLAGALLNGFA---QAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQ 175 (355)
Q Consensus 99 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~ 175 (355)
++|+++||+|||++++++.++..++.+++.+. .+++.+++.|+++|++.+...+....++.|++|+++|++++++..
T Consensus 90 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 169 (481)
T TIGR00879 90 FAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQ 169 (481)
T ss_pred HhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHH
Confidence 99999999999999999999999999888654 345689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH---HHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCCCccH
Q 041698 176 LSITVGILIANVLN---YFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVE 252 (355)
Q Consensus 176 ~~~~~G~~~~~~i~---~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (355)
.+..+|..+++.++ ....+ ..+||+.|++.++..++..+..+++||+|++...+++.+++.+..++....++.+
T Consensus 170 ~~~~~G~~~~~~~~~~~~~~~~---~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (481)
T TIGR00879 170 LAITFGILVAYGFGSGKVSLNN---TLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGED 246 (481)
T ss_pred HHHHHHHHHHHHHHHHhhcCCC---CccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCc
Confidence 99999999999998 54444 4689999999776666666666778999988776666666555555444333222
Q ss_pred HHHHHH----HH-HHHHhhccccchhhhhccC--chhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHH
Q 041698 253 EEFNDL----VA-ASEASRQVEHPWKNLLQKK--YRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAV 325 (355)
Q Consensus 253 ~~~~~~----~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 325 (355)
.+..+. .. ...+.+..+..+.+.++.. ..++.++..++.++..........++.|++.++.|++..+.+....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 326 (481)
T TIGR00879 247 KELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSI 326 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHH
Confidence 111110 00 0011111122244444322 2345555556666666666677788889998999999988889999
Q ss_pred HHHHHHHHHhhhhhheecccCCcccccc
Q 041698 326 ITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 326 ~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
+..++.+++.++.++++||++||+.+..
T Consensus 327 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 354 (481)
T TIGR00879 327 IVGAVNFAFTFVAIFLVDRFGRRPLLLI 354 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 9999999999999999999999987654
No 7
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-31 Score=228.05 Aligned_cols=265 Identities=19% Similarity=0.294 Sum_probs=216.3
Q ss_pred HHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhh
Q 041698 26 TCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTR 105 (355)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d 105 (355)
.++...++.|..+.+....... +|++.+++ |+|..+.|++.|.|.+++.+++++...+.|
T Consensus 14 ~l~aLa~~~F~igttEfv~~gL--Lp~iA~dl------------------~vs~~~aG~lis~yAl~~ai~ap~l~~lt~ 73 (394)
T COG2814 14 ALLALALAAFAIGTTEFVPVGL--LPPIAADL------------------GVSEGAAGQLITAYALGVALGAPLLALLTG 73 (394)
T ss_pred HHHHHHHHHHHHHhHHHHHHhc--hHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455556667777766666555 67776666 999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHH
Q 041698 106 QFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIA 185 (355)
Q Consensus 106 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~ 185 (355)
|+.||++++..+.+++++++++++++||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.++|
T Consensus 74 r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~G 153 (394)
T COG2814 74 RLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLG 153 (394)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Q 041698 186 NVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEA 264 (355)
Q Consensus 186 ~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (355)
.+++.++.+ .+|||..|++.+.++++.++.. ..+| |+. .
T Consensus 154 vPLGt~ig~---~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~-----------------------------------~ 193 (394)
T COG2814 154 VPLGTFLGQ---LFGWRATFLAIAVLALLALLLLWKLLP--PSE-----------------------------------I 193 (394)
T ss_pred ccHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHhCC--Ccc-----------------------------------C
Confidence 999999999 6889999999999988876654 5678 210 0
Q ss_pred hhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecc
Q 041698 265 SRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDK 344 (355)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 344 (355)
+++.+.+.++.++..++++.+.......+.....+..+++.-|++.+..|++.+..++....++++.++|..+.|++.||
T Consensus 194 ~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr 273 (394)
T COG2814 194 SGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR 273 (394)
T ss_pred CCCCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 01111222222232333444444444444444555566777788778899999999999999999999999999999999
Q ss_pred cCCcccc
Q 041698 345 WGRRFLF 351 (355)
Q Consensus 345 ~g~r~~~ 351 (355)
+.|+.+
T Consensus 274 -~~~~~l 279 (394)
T COG2814 274 -GPRRAL 279 (394)
T ss_pred -cchhHH
Confidence 666554
No 8
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.98 E-value=4.4e-32 Score=230.09 Aligned_cols=293 Identities=18% Similarity=0.202 Sum_probs=224.3
Q ss_pred CChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHH
Q 041698 19 LTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSL 98 (355)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~ 98 (355)
.+++++.+...+.+++..+++..-.++.+ +|...++. ++|.+|.|++.+++.+.|+++..
T Consensus 23 y~~~r~qif~~~fiGYa~fYl~RknF~~a--~p~l~e~~------------------~lsk~~lG~i~s~f~i~YG~sKf 82 (448)
T COG2271 23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLA--MPALIEDG------------------GLSKTQLGILGSAFSITYGVSKF 82 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhc--cHHHHHhc------------------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777777777776655 55555554 89999999999999999999999
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHH
Q 041698 99 VASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSI 178 (355)
Q Consensus 99 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 178 (355)
+.|.++||.++|+.+.+++++.++.+++++++++.+.+.++.+++|..+|.-+|++...++.|+|+++||+..++++++-
T Consensus 83 ~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~sh 162 (448)
T COG2271 83 VMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSH 162 (448)
T ss_pred HhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--HHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHH
Q 041698 179 TVGILIANVLN--YFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEF 255 (355)
Q Consensus 179 ~~G~~~~~~i~--~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (355)
++|+.+.|++. +++.. +.+||..|++.++++++..+.. +..+|+|+.. ..+..|+..
T Consensus 163 NiGGal~~~~~~la~~~~---~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~-----------------GLP~ie~~~ 222 (448)
T COG2271 163 NIGGALAPLVALLAFFAF---HGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE-----------------GLPPIEEYR 222 (448)
T ss_pred hcccchHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc-----------------CCCCHHHhh
Confidence 99999999999 77776 5689999999999988766554 5578887521 011111111
Q ss_pred HHHHHH-HHHhhccccchhhhh-ccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH-hcCCCCcHHHHHHHHHHHHHH
Q 041698 256 NDLVAA-SEASRQVEHPWKNLL-QKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN-TIGFGSDASLMSAVITGIVNV 332 (355)
Q Consensus 256 ~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~ 332 (355)
++..+. +++++.+.-+.++++ +.....+.++..++..+.....=+.+..|.|.++. ..|++...+.+..+.+-++++
T Consensus 223 ~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl 302 (448)
T COG2271 223 GDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGL 302 (448)
T ss_pred cCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Confidence 111111 111111112233333 32223333444444444444455677788887775 589999999999999999999
Q ss_pred HHhhhhhheeccc--CCcccc
Q 041698 333 VATMVSIYGVDKW--GRRFLF 351 (355)
Q Consensus 333 ~~~~~~g~l~d~~--g~r~~~ 351 (355)
+|++++|+++||+ |||.++
T Consensus 303 ~G~Ll~GwlSDklfkgrR~p~ 323 (448)
T COG2271 303 PGTLLAGWLSDKLFKGRRGPM 323 (448)
T ss_pred HHHHHHHHHHHHhcccccchH
Confidence 9999999999997 566554
No 9
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.98 E-value=4.3e-31 Score=237.68 Aligned_cols=297 Identities=16% Similarity=0.175 Sum_probs=215.6
Q ss_pred HHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhh
Q 041698 24 LVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRV 103 (355)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l 103 (355)
+.......++++.+++|....+.+ .|.+ ++|+|++..+.+++.+++++++.+++++.|++
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~--~~~l------------------~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l 66 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFA--GLTM------------------GKDLGLSATMFGLAATLFYAAYVICGIPSNIM 66 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHH--HHhh------------------HhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 445556666777888888887766 3433 44559999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHH
Q 041698 104 TRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGIL 183 (355)
Q Consensus 104 ~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ 183 (355)
+||+|||+++..+.++.+++++++++++|++.+++.|+++|++.+...+....++.|++|+++|+++++++..+..+|..
T Consensus 67 ~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~ 146 (412)
T TIGR02332 67 LAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMA 146 (412)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC---CCccchHHHHhhhHHHHHHHHH-HhccccCChhHHHhcCChHHHHHHHH-HHhCCC-ccHHHHHH
Q 041698 184 IANVLNYFFNKI---HGGWGWRLSLGGAMVPALIITV-GSMILPDTPNSIIERGRHEEAREELR-KVRGVN-DVEEEFND 257 (355)
Q Consensus 184 ~~~~i~~~~~~~---~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~ 257 (355)
+++.+++.+.+. .+..+||+.|++.+++.++..+ ..+++||+|+.. +...++.++..+ ...... +.++..
T Consensus 147 ~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~-- 222 (412)
T TIGR02332 147 LGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEEDKKALKEMIDNDQLTLEQPE-- 222 (412)
T ss_pred HHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHHHHHHHHHHHhccccccccc--
Confidence 999999987642 1236899999998888765544 446679988531 100111111111 111000 000000
Q ss_pred HHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHh
Q 041698 258 LVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTI--GFGSDASLMSAVITGIVNVVAT 335 (355)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~ 335 (355)
+. .++ ++...+..++....+. ++...+..++.......+..|.|.++++. +++..+++.......++.+++.
T Consensus 223 --~~--~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~ 296 (412)
T TIGR02332 223 --GA--FAH-AAMPQRSMLREIFTPA-IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGM 296 (412)
T ss_pred --cc--ccc-ccccHHHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHH
Confidence 00 000 0111111112112222 33334444444455666778888888774 6677888889999999999999
Q ss_pred hhhhheecccCCccc
Q 041698 336 MVSIYGVDKWGRRFL 350 (355)
Q Consensus 336 ~~~g~l~d~~g~r~~ 350 (355)
++.|+++||+++|+.
T Consensus 297 l~~g~l~dr~~~r~~ 311 (412)
T TIGR02332 297 IWWSRHSDRLKERKH 311 (412)
T ss_pred HHHHHHhcccCccHH
Confidence 999999999997764
No 10
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.98 E-value=4e-31 Score=243.12 Aligned_cols=288 Identities=17% Similarity=0.274 Sum_probs=208.2
Q ss_pred HHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCc--chhHH--HHHHHHHHHHHHHHhh
Q 041698 25 VTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDS--ETLTM--FTSSLYLAALLSSLVA 100 (355)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~--~~s~~~l~~~~~~~~~ 100 (355)
.......++.++++||..+++.. .|.+.++++++ .+. ...+. +.++.++++.+++++.
T Consensus 16 ~~~~~~~~g~~~~~~d~~~~~~~--~~~i~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~ig~~~~ 77 (490)
T PRK10642 16 KAITAASLGNAMEWFDFGVYGFV--AYALGKVFFPG----------------ADPSVQMIAALATFSVPFLIRPLGGLFF 77 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhCCC----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778899999999998877 66666666421 111 11222 2578889999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHH--------HHHHHHHhhhcccccccchhhhhhhcCCCCcccchhh
Q 041698 101 SRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWM--------LIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNI 172 (355)
Q Consensus 101 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~ 172 (355)
|+++||+|||+++.++.++++++++++++++|++. ++++|+++|++.|+.++....++.|++|+++|++..+
T Consensus 78 G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~ 157 (490)
T PRK10642 78 GMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGS 157 (490)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHH
Confidence 99999999999999999999999999999999874 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC-----CCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhC
Q 041698 173 GFQLSITVGILIANVLNYFFNKI-----HGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRG 247 (355)
Q Consensus 173 ~~~~~~~~G~~~~~~i~~~~~~~-----~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 247 (355)
+...+..+|..+++.+...+... ..+++||+.|++.++++++.++....+||+|++...+++.++..+
T Consensus 158 ~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~------- 230 (490)
T PRK10642 158 WLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR------- 230 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc-------
Confidence 99988888888888666544321 114799999999877666555555678999986532221111000
Q ss_pred CCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH-hcCCCCcHHHHHHHH
Q 041698 248 VNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN-TIGFGSDASLMSAVI 326 (355)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~ 326 (355)
+...+.++.++++++++ ..+. +.......+.....++....+.|.+++ ..|++..+.......
T Consensus 231 --------------~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~ 294 (490)
T PRK10642 231 --------------EGLQDGPKVSFKEIATK-HWRS-LLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIA 294 (490)
T ss_pred --------------ccccccccCCHHHHHHH-hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 00001112345555543 2222 222222222223344556667777774 578888877777788
Q ss_pred HHHHHHHHhhhhhheecccCCcccccc
Q 041698 327 TGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 327 ~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
..++.+++.++.|+++||+|||+.+..
T Consensus 295 ~~~~~~~~~~~~g~l~dr~grr~~~~~ 321 (490)
T PRK10642 295 IMIGMLFVQPVMGLLSDRFGRRPFVIL 321 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 888899999999999999999987654
No 11
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.97 E-value=1.4e-30 Score=236.16 Aligned_cols=280 Identities=19% Similarity=0.203 Sum_probs=203.0
Q ss_pred hhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcch---hHHHHHHHHHHHHHHH
Q 041698 21 PYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSET---LTMFTSSLYLAALLSS 97 (355)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~~~s~~~l~~~~~~ 97 (355)
.+.+..+....++.++++||...++.. .|.+.++++++ +.+..+ .+.+.+..+++..+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~ig~ 80 (432)
T PRK10406 18 RRRIWAIVGASSGNLVEWFDFYVYSFC--SLYFAHIFFPS---------------GNTTTQLLQTAGVFAAGFLMRPIGG 80 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCC---------------CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556677889999999998766 66777776432 233343 3444555666666999
Q ss_pred HhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHH--------HHHHHHHHhhhcccccccchhhhhhhcCCCCcccc
Q 041698 98 LVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIW--------MLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGA 169 (355)
Q Consensus 98 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~ 169 (355)
+++|+++||+|||+++.++.++++++++++++++++. .++++|+++|++.|+.++...+++.|++|+++|++
T Consensus 81 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~ 160 (432)
T PRK10406 81 WLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGF 160 (432)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccH
Confidence 9999999999999999999999999999999988764 68999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCC-----CccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHH
Q 041698 170 LNIGFQLSITVGILIANVLNYFFNKIH-----GGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRK 244 (355)
Q Consensus 170 ~~~~~~~~~~~G~~~~~~i~~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 244 (355)
..++...+...|.++++.+...+.... ..++||+.|++.++++++.+.....+||+|++.. +
T Consensus 161 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~------~------- 227 (432)
T PRK10406 161 YASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQET------R------- 227 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHH------h-------
Confidence 999999888888888887765543211 1369999999888877766555556777764210 0
Q ss_pred HhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH-HhcCCCCcHHHHH
Q 041698 245 VRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-NTIGFGSDASLMS 323 (355)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~ 323 (355)
+++++.+++++++.+ +.+.......+......+.+..|.|.++ ++.|++..+.+..
T Consensus 228 --------------------~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~ 284 (432)
T PRK10406 228 --------------------ALKEAGSLKGLWRNR---RAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGI 284 (432)
T ss_pred --------------------hhcccccHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 000112345555422 2222222222222233444566777666 4578988888888
Q ss_pred HHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 324 AVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 324 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.....+...++..+.|+++||++||+.+.+
T Consensus 285 ~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~ 314 (432)
T PRK10406 285 MTAALFVFMLIQPLIGALSDKIGRRTSMLC 314 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 888888888889999999999999986543
No 12
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.97 E-value=6e-30 Score=230.50 Aligned_cols=301 Identities=20% Similarity=0.236 Sum_probs=215.4
Q ss_pred CChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHH
Q 041698 19 LTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSL 98 (355)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~ 98 (355)
..++.+.....+.++.+.++++....+++ .|.+.+++ |++..+.+++.+++.++..++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~------------------~~s~~~~g~~~~~~~~~~~~~~~ 65 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALV--LAEVAGEF------------------GLTTVDAASLISAALISRWFGAL 65 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCChhhHHHHHHHHHHHHHHHHH
Confidence 34455666777788888999988887666 55555555 99999999999999999999999
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHH
Q 041698 99 VASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSI 178 (355)
Q Consensus 99 ~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 178 (355)
+.|+++||+|||++++++.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+.
T Consensus 66 ~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 145 (405)
T TIGR00891 66 MFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGY 145 (405)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHH
Q 041698 179 TVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDL 258 (355)
Q Consensus 179 ~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (355)
.+|..+++.+++.+.+..+ .+||+.|++.+++.++..+....+||++++...+++.++..+..++..+.+...
T Consensus 146 ~~g~~~~~~l~~~l~~~~~-~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 218 (405)
T TIGR00891 146 AVGAVVAAQVYSLVVPVWG-DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRI------ 218 (405)
T ss_pred HHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhh------
Confidence 9999999999998876321 359999988766666555555667888765332221111111111111100000
Q ss_pred HHHHHHhhccccchhhhhcc-CchhHHHH-HHHHHHHHHcccccchHhcHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHh
Q 041698 259 VAASEASRQVEHPWKNLLQK-KYRPHLTM-AVLIPFFQQFTGINVIMFYAPVLF-NTIGFGSDASLMSAVITGIVNVVAT 335 (355)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~ 335 (355)
+...+.......+. ...+..+. ......+.... ......+.|.+. ++.|++..+.+.......++.+++.
T Consensus 219 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~ 291 (405)
T TIGR00891 219 ------ANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLY-SHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGG 291 (405)
T ss_pred ------hhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 00000000001111 11111111 11111111111 122333445444 5689999999999999999999999
Q ss_pred hhhhheecccCCcccccc
Q 041698 336 MVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 336 ~~~g~l~d~~g~r~~~~~ 353 (355)
++.+++.||++||+.+..
T Consensus 292 ~~~g~l~dr~g~~~~~~~ 309 (405)
T TIGR00891 292 CVFGFLGDWLGRRKAYVC 309 (405)
T ss_pred HHHHHHHHHhCchhhhHH
Confidence 999999999999987653
No 13
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.97 E-value=2.5e-35 Score=269.14 Aligned_cols=314 Identities=36% Similarity=0.752 Sum_probs=245.3
Q ss_pred HhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhch
Q 041698 30 AAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGR 109 (355)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr 109 (355)
+.++.+.+|||.+.++.......+...+..+.. ..+.+.+..+.+++.++..+|..+|++++|+++||+||
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GR 75 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSS---------ESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGR 75 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhhhhccccccc---------cccccchHHHHHHHHHHHHhhhcccccccccccccccc
Confidence 445668999999988766434333333321111 11112255688999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHH
Q 041698 110 KLSMFFGGILFLAGALLNGFAQ---AIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIAN 186 (355)
Q Consensus 110 r~~l~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 186 (355)
|+.+.++.++..+++++.++++ +++.+.++|+++|++.|...+....++.|..|+++|++..++...+..+|.+++.
T Consensus 76 k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~ 155 (451)
T PF00083_consen 76 KPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLAS 155 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhh
Q 041698 187 VLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASR 266 (355)
Q Consensus 187 ~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (355)
.++.......++++||+.+.+..+++++..+..+++||||+|+..++|.+|+++.+++.++.+..+++.++..++.++.+
T Consensus 156 ~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 235 (451)
T PF00083_consen 156 LIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQ 235 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccccccccc
Confidence 88776644333457999999999998877777788999999999999999999998887665544444444333333333
Q ss_pred ccccchhhhhccCc-hhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheeccc
Q 041698 267 QVEHPWKNLLQKKY-RPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKW 345 (355)
Q Consensus 267 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 345 (355)
+.+..++++++.+. +++......+..+....+.....++.+.+.++.+.+.. ........+..+++.+++.++.||+
T Consensus 236 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (451)
T PF00083_consen 236 ESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF 313 (451)
T ss_pred ccceeeeeccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 33356777776644 44555555565666666667778888888888777766 3344556677888888888999999
Q ss_pred CCccccccC
Q 041698 346 GRRFLFLEG 354 (355)
Q Consensus 346 g~r~~~~~~ 354 (355)
|||++++.+
T Consensus 314 GRr~~~i~~ 322 (451)
T PF00083_consen 314 GRRKLLIIG 322 (451)
T ss_pred ccccccccc
Confidence 999888765
No 14
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.97 E-value=1.6e-29 Score=229.21 Aligned_cols=288 Identities=16% Similarity=0.216 Sum_probs=211.9
Q ss_pred hhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhh
Q 041698 21 PYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVA 100 (355)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~ 100 (355)
+.++.....+.++.+.++++.....+. +|.+.+++ |+|..+.+++.+++.+++.+++++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~------------------~~s~~~~~~~~~~~~~~~~l~~~~~ 73 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYI--MYLIKADL------------------GLTDMEGAFLATAAFIGRPFGGALF 73 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566777778888888776554 45554444 9999999999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHH
Q 041698 101 SRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITV 180 (355)
Q Consensus 101 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 180 (355)
|+++||+|||+++.++.++.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++...+..+
T Consensus 74 g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l 153 (426)
T PRK12307 74 GLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGI 153 (426)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHH
Q 041698 181 GILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVA 260 (355)
Q Consensus 181 G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (355)
|.++++.+.+.+.+ ..+||+.|++..+..++.+......||++++...+.+. .++..
T Consensus 154 g~~~~~~l~~~l~~---~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~~~~-------- 210 (426)
T PRK12307 154 GNIIAAYFMPSFAE---AYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG------------KGKHS-------- 210 (426)
T ss_pred HHHHHHHHHHHHcc---cCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc------------ccccc--------
Confidence 99999999888876 56899999875544433332233356665432111000 00000
Q ss_pred HHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhh
Q 041698 261 ASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIY 340 (355)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 340 (355)
+...+..+.+++++++++..+........ .+........+..+.|.+.++.|+++...+.......++.+++.++.++
T Consensus 211 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~ 288 (426)
T PRK12307 211 -QSAWSVFSLSMKGLFNRAQFPLTLCVFIV-LFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGL 288 (426)
T ss_pred -ccchhhhhHHHHHHHhhchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000011234455554433332222222 2222222233455677777778999888898889999999999999999
Q ss_pred eecccCCcccccc
Q 041698 341 GVDKWGRRFLFLE 353 (355)
Q Consensus 341 l~d~~g~r~~~~~ 353 (355)
+.||++||+.+..
T Consensus 289 l~dr~~~~~~~~~ 301 (426)
T PRK12307 289 CADRIGLKKTFSI 301 (426)
T ss_pred HHHHhccHHHHHH
Confidence 9999999987653
No 15
>TIGR00898 2A0119 cation transport protein.
Probab=99.97 E-value=1.2e-29 Score=234.96 Aligned_cols=273 Identities=20% Similarity=0.372 Sum_probs=208.1
Q ss_pred cccccccccCC---cchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q 041698 68 NESTNQYCQYD---SETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLG 144 (355)
Q Consensus 68 ~~~~~~~~~~s---~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 144 (355)
.+.+.+|+|++ ..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++.+++++++.++++|++.|
T Consensus 112 ~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G 191 (505)
T TIGR00898 112 SSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVG 191 (505)
T ss_pred cccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 45678888999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccC
Q 041698 145 FGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPD 224 (355)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (355)
++.+...+....++.|++|+++|+++.++...+..+|.++++.++..+. +||+.+++.+++.++..+..+++||
T Consensus 192 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------~wr~~~~~~~i~~~~~~~~~~~~~e 265 (505)
T TIGR00898 192 MGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------DWRWLQLAVSLPTFLFFLLSWFVPE 265 (505)
T ss_pred hhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999887664 3999999998887777766778999
Q ss_pred ChhHHHhcCChHHHHHHHHHHhCCCcc--HHHHHHHH-HHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccc
Q 041698 225 TPNSIIERGRHEEAREELRKVRGVNDV--EEEFNDLV-AASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINV 301 (355)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (355)
+|+|+..+++.+++.+.+++..+.+.. ..+..... ++++.+++++.+.+++++.+..+...+.....++....
T Consensus 266 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---- 341 (505)
T TIGR00898 266 SPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF---- 341 (505)
T ss_pred ChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHH----
Confidence 999999999998888777665543321 11111111 11111112234667777665544444433333332211
Q ss_pred hHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 302 IMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 302 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
..+..+......+.+ ........++..+++.++.+++.||+|||+.+.+
T Consensus 342 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~ 390 (505)
T TIGR00898 342 SYYGLVLDLGNLGGN---IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAA 390 (505)
T ss_pred HHHHHhccccccCCC---hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 112222223333433 2344556678889999999999999999987654
No 16
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.97 E-value=3.6e-29 Score=225.56 Aligned_cols=277 Identities=19% Similarity=0.219 Sum_probs=214.4
Q ss_pred hHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhh
Q 041698 22 YVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVAS 101 (355)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g 101 (355)
+.+.....+.+..+.+++|....+.. .|.+.+++ |+|..+.+++.+++.++..+++++.|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------~~s~~~~g~~~~~~~~~~~~~~~~~g 71 (406)
T PRK11551 12 RLALTIGLCFLVALLEGLDLQSAGVA--APRMAQEF------------------GLDVAQMGWAFSAGILGLLPGALLGG 71 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777888888999999887766 56666665 89999999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHH
Q 041698 102 RVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVG 181 (355)
Q Consensus 102 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 181 (355)
+++||+|||+++..+.++..++.++++++++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|
T Consensus 72 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 151 (406)
T PRK11551 72 RLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFG 151 (406)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHH-HhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHH
Q 041698 182 ILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITV-GSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVA 260 (355)
Q Consensus 182 ~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (355)
..+++.++..+.+ ..+||+.|++.++..++..+ ...++||+|++...+.+.++..
T Consensus 152 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------------------- 207 (406)
T PRK11551 152 GALASVIGVLAAG---DAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRA--------------------- 207 (406)
T ss_pred HHHHHHHHHHHcc---ccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhh---------------------
Confidence 9999999887766 56899999887766555443 3456788876432211100000
Q ss_pred HHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhh
Q 041698 261 ASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIY 340 (355)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 340 (355)
......++....++.. ......+...........+.|.+.++.|+++.+.+.......++.+++.++.|+
T Consensus 208 ---------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~ 277 (406)
T PRK11551 208 ---------PVLRALFGEGRATATL-LLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGA 277 (406)
T ss_pred ---------hhHHHHhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence 0000111111111111 111112222223344556778888889999999999999999999999999999
Q ss_pred eecccCCccccc
Q 041698 341 GVDKWGRRFLFL 352 (355)
Q Consensus 341 l~d~~g~r~~~~ 352 (355)
+.||++||+.+.
T Consensus 278 l~dr~g~~~~~~ 289 (406)
T PRK11551 278 LMDRLRPRRVVL 289 (406)
T ss_pred HHHHHhHHHHHH
Confidence 999999988764
No 17
>PRK03545 putative arabinose transporter; Provisional
Probab=99.96 E-value=1.2e-28 Score=220.75 Aligned_cols=238 Identities=14% Similarity=0.155 Sum_probs=184.6
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
++++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++++++++++|++.++++|+++|++.+...
T Consensus 36 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 115 (390)
T PRK03545 36 AQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFW 115 (390)
T ss_pred HhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 34449999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSII 230 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~ 230 (355)
+...+++.|++|+++|++++++...+.++|..++|++++.+.+ ..+||+.|++.+++.++..+.. ..+||+|+.
T Consensus 116 ~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~---~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~-- 190 (390)
T PRK03545 116 SITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ---YLGWRTTFLAIGGGALITLLLLIKLLPLLPSE-- 190 (390)
T ss_pred HHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH---HhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--
Confidence 9999999999999999999999999999999999999999877 5789999999888766654433 345665320
Q ss_pred hcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH
Q 041698 231 ERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF 310 (355)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (355)
+.++ .++.++.++++..+...... ++..........+..+++.
T Consensus 191 ---~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~ 233 (390)
T PRK03545 191 ---HSGS-------------------------------LKSLPLLFRRPALVSLYLLT---VVVVTAHFTAYSYIEPFVQ 233 (390)
T ss_pred ---Ccch-------------------------------HHHHHHHHhCcHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 0000 00122333333222212111 1111111122233344444
Q ss_pred HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccc
Q 041698 311 NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLF 351 (355)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~ 351 (355)
++.|+++.+++.......++.++++++.+++.||+++|+..
T Consensus 234 ~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~ 274 (390)
T PRK03545 234 QVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL 274 (390)
T ss_pred HhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 55789999999999999999999999999999999987653
No 18
>PRK09952 shikimate transporter; Provisional
Probab=99.96 E-value=1.3e-28 Score=223.25 Aligned_cols=280 Identities=18% Similarity=0.267 Sum_probs=195.2
Q ss_pred HHHHHHHhhhhhhhhccccccccccCchhh-hhhhcccccccccccccccccccCCcchhHHHH-----HHHHHHHHHHH
Q 041698 24 LVTCIVAAMGGLIFGYDIGISGGVTSMPSF-LKKFFPSVYRKQQANESTNQYCQYDSETLTMFT-----SSLYLAALLSS 97 (355)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~-----s~~~l~~~~~~ 97 (355)
+.......++.++++||...++.. .|.+ .+++++ +.++. .+++. ++.++++.+++
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~~----------------~~~~~-~~~~~~~~~~~~~~~~~~~g~ 81 (438)
T PRK09952 21 RRAALGSFAGAVVDWYDFLLYGIT--AALVFNREFFP----------------QVSPA-MGTLAAFATFGVGFLFRPLGG 81 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCC----------------CCCcH-HHHHHHHHHHHHHHHHHhhHH
Confidence 345666777889999999987765 4433 334432 23333 34433 45667788999
Q ss_pred HhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHH--------HHHHHHHHhhhcccccccchhhhhhhcCCCCcccc
Q 041698 98 LVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIW--------MLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGA 169 (355)
Q Consensus 98 ~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~ 169 (355)
++.|+++||+|||++++++.++++++++++++++++. .++++|+++|++.|..++....++.|++|+++|++
T Consensus 82 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~ 161 (438)
T PRK09952 82 VVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAF 161 (438)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcH
Confidence 9999999999999999999999999999999999987 58899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCC-----CccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHH
Q 041698 170 LNIGFQLSITVGILIANVLNYFFNKIH-----GGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRK 244 (355)
Q Consensus 170 ~~~~~~~~~~~G~~~~~~i~~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 244 (355)
..+....+..+|.+++..+...+.... .+++||+.|++.+++.++........||+|++...+++.++
T Consensus 162 ~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~------- 234 (438)
T PRK09952 162 YSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA------- 234 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc-------
Confidence 999999999999999887776654321 14799999998887765554444567888765322111000
Q ss_pred HhCCCccHHHHHHHHHHHHHhhccccchh-hhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH-HhcCCCCcHHHH
Q 041698 245 VRGVNDVEEEFNDLVAASEASRQVEHPWK-NLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-NTIGFGSDASLM 322 (355)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~ 322 (355)
.+++.+.. .+++.+ +.+.......++.....+....+.|.+. ++.|++......
T Consensus 235 ---------------------~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~ 290 (438)
T PRK09952 235 ---------------------AKKRIPVIEALLRHP---GAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLN 290 (438)
T ss_pred ---------------------ccccCCHHHHHHHch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 00011111 122222 2222222222222223344455666555 457887766555
Q ss_pred HHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 323 SAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 323 ~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.....++..+++.++.|+++||++||+.+..
T Consensus 291 ~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~ 321 (438)
T PRK09952 291 IGLLVGGLSCLTIPCFAWLADRFGRRRVYIT 321 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 5556677788889999999999999987653
No 19
>TIGR00895 2A0115 benzoate transport.
Probab=99.96 E-value=9.4e-29 Score=222.10 Aligned_cols=302 Identities=20% Similarity=0.307 Sum_probs=214.5
Q ss_pred HHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhh
Q 041698 23 VLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASR 102 (355)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~ 102 (355)
.+.....+.+..+..+++....+.. +|.+.+++ |.+..+.+++.+.+.++..++.++.|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~ 74 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLAAMGFA--APAISAEW------------------GLDPVQLGFLFSAGLIGMAFGALFFGP 74 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--HHHHhhcc------------------CCCHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3444444555566666666554443 45554444 889999999999999999999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHH
Q 041698 103 VTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGI 182 (355)
Q Consensus 103 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 182 (355)
++||+|||+.+..+.++.+++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.
T Consensus 75 l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 154 (398)
T TIGR00895 75 LADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGA 154 (398)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCccchHHHHhhhHHHHHHH-HHHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041698 183 LIANVLNYFFNKIHGGWGWRLSLGGAMVPALII-TVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAA 261 (355)
Q Consensus 183 ~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (355)
.+++.+++.+.+ ..+|++.+++.++..++. .+...++||++++...+ +.++..+..++.......+.+. +..+.
T Consensus 155 ~~~~~~~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 229 (398)
T TIGR00895 155 AVGGFLAGWLIP---VFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS-ALPEQ 229 (398)
T ss_pred HHHHHHHHHHhh---cccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc-ccccc
Confidence 999999999887 568999998876554443 34456678887665443 3333333222222111100000 00000
Q ss_pred HHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhhe
Q 041698 262 SEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYG 341 (355)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 341 (355)
++.++..+...+.+++.+..++.. ......+...........+.|++.++.|+++.+.+.......++.+++.++.+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l 308 (398)
T TIGR00895 230 KATQGTKRSVFKALFQGKTARITV-LLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWL 308 (398)
T ss_pred ccccchhhHHHHHHhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000001111122233322222222 2222223333344556667788888899999999999999999999999999999
Q ss_pred ecccCCccc
Q 041698 342 VDKWGRRFL 350 (355)
Q Consensus 342 ~d~~g~r~~ 350 (355)
+||+++|+.
T Consensus 309 ~~~~~~~~~ 317 (398)
T TIGR00895 309 ADRLGPRVT 317 (398)
T ss_pred HhhcchHHH
Confidence 999998844
No 20
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.96 E-value=1.5e-29 Score=231.66 Aligned_cols=295 Identities=14% Similarity=0.037 Sum_probs=208.2
Q ss_pred hhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhh
Q 041698 21 PYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVA 100 (355)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~ 100 (355)
+..+.......++++....|...++.. +|.+.+++ |++..+.|++.+++.+++.+++++.
T Consensus 25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~--~~~i~~~~------------------~~s~~~~g~~~s~~~~~~~~~~~~~ 84 (467)
T PRK09556 25 KPFMQSYLVVFIGYLTMYLIRKNFKAA--QNDMISTY------------------GLSTTELGMIGLGFSITYGVGKTLV 84 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhh--hHHHHHhc------------------CCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 334555666667777777788777766 56665555 9999999999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHH
Q 041698 101 SRVTRQFGRKLSMFFGGILFLAGALLNGF-----AQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQ 175 (355)
Q Consensus 101 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~ 175 (355)
|+++||+|||+++.++.++++++.++.++ +++++.+++.|+++|++.+...+....++.|++|+++|+++++++.
T Consensus 85 G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~ 164 (467)
T PRK09556 85 GYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWN 164 (467)
T ss_pred hhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeee
Confidence 99999999999999998888887776665 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccCChhHHHhcCChHHHHHHHHHHhCCCccHHH
Q 041698 176 LSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEE 254 (355)
Q Consensus 176 ~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (355)
.+.++|.++++.++..+.+.....+||..|.+.+++.++..+. +++.+++|+..... +.++ . ..+....++
T Consensus 165 ~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-~~~~---~---~~~~~~~~~- 236 (467)
T PRK09556 165 ISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-KAEE---I---FGEPISEED- 236 (467)
T ss_pred cccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-Chhh---c---ccCccchhh-
Confidence 9999999999998876654211126999888877776655444 34457666421110 0010 0 000000000
Q ss_pred HHHHHHHHHHhhccccchhhhh-c-cCchhHHHHHHHHHHHHHcccccchHhcHHHHH-HhcCCCCcHHHHHHHHHHHHH
Q 041698 255 FNDLVAASEASRQVEHPWKNLL-Q-KKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-NTIGFGSDASLMSAVITGIVN 331 (355)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~ 331 (355)
+..++++.+..+.+ + ..+.+. ++...+..++..........|.|.++ +++|++..+++.......++.
T Consensus 237 --------~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~ 307 (467)
T PRK09556 237 --------KETESTDMTKWQIFVEYVLKNPV-IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGA 307 (467)
T ss_pred --------hccccccCcHHHHHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 00000011111111 1 111222 33333333333333445667788766 558999999999999999999
Q ss_pred HHHhhhhhheecccCCccccc
Q 041698 332 VVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 332 ~~~~~~~g~l~d~~g~r~~~~ 352 (355)
+++.++.|+++||++||+.+.
T Consensus 308 ~ig~~~~G~lsDr~g~r~~~~ 328 (467)
T PRK09556 308 LVGSLLWGWLSDLANGRRALV 328 (467)
T ss_pred HHHHHHHHHHHHHHCCCchHH
Confidence 999999999999999887654
No 21
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.96 E-value=7.2e-29 Score=224.96 Aligned_cols=282 Identities=16% Similarity=0.190 Sum_probs=204.3
Q ss_pred HHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhh
Q 041698 23 VLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASR 102 (355)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~ 102 (355)
.+.......++.+...++...++.. +|.+.+++ |+|..+.+++.+.+.+++.+++++.|+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~G~ 80 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAA--MPEMLADL------------------GLSRSDIGLLATLFYITYGVSKFVSGI 80 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHh--hHHHHHhc------------------CCCHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3344444555666666666555444 56665554 999999999999999999999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHH
Q 041698 103 VTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGI 182 (355)
Q Consensus 103 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 182 (355)
++||+|||+++.++.++.+++.++++++++++.+++.|++.|++.|...+....++.|++|+++|++++++.+.+.++|.
T Consensus 81 l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~ 160 (434)
T PRK11663 81 VSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGG 160 (434)
T ss_pred HHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHH-HHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041698 183 LIANVLNYFFNKIHGGWGWRLSLGGAMVPALIIT-VGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAA 261 (355)
Q Consensus 183 ~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (355)
.+++.+.+.+.+ .++||+.|++.+++.++.. +..++++|+|++.......++.. +.+ + .
T Consensus 161 ~~~~~~~~~l~~---~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----------~~~----~---~ 220 (434)
T PRK11663 161 ALIPLVVGAIAL---HYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH----------DAL----E---L 220 (434)
T ss_pred HHHHHHHHHHHH---cccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc----------ccc----c---c
Confidence 999999999887 5789999998887755443 33456788775421111000000 000 0 0
Q ss_pred HHHhhccccchhhhhc--cCchhHHHHHHHHHHHHHcccccchHhcHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHhhhh
Q 041698 262 SEASRQVEHPWKNLLQ--KKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-NTIGFGSDASLMSAVITGIVNVVATMVS 338 (355)
Q Consensus 262 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 338 (355)
.++.++++.+.++.++ ..+.++ ++...+..+........+..+.|.++ ++.|++..+++.......++.+++.++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~ 299 (434)
T PRK11663 221 AQQQEGAGLSRKEILTKYVLLNPY-IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVA 299 (434)
T ss_pred chhccccCCChhhhHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000001112222221 111122 22222223333333445556777777 5679999999999999999999999999
Q ss_pred hheeccc
Q 041698 339 IYGVDKW 345 (355)
Q Consensus 339 g~l~d~~ 345 (355)
|+++||+
T Consensus 300 g~l~dr~ 306 (434)
T PRK11663 300 GWGSDKL 306 (434)
T ss_pred hhhHHHh
Confidence 9999998
No 22
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.96 E-value=5.5e-29 Score=229.16 Aligned_cols=301 Identities=11% Similarity=0.056 Sum_probs=216.8
Q ss_pred HHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhh
Q 041698 23 VLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASR 102 (355)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~ 102 (355)
.+..+..++++.+....|.++.+.+ +|++.+++ |.+.++.+|+.+++.+++.++.+++|+
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a--~p~i~~~l------------------~~s~~~~~~~~~~~~l~~~~~~~~~G~ 63 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVA--APTLSMTL------------------GASGNELLWIIDIYSLVMAGMVLPMGA 63 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888889999999998877 78877776 889999999999999999999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcC-CCCcccchhhHHHHHHHHH
Q 041698 103 VTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMA-PYRFRGALNIGFQLSITVG 181 (355)
Q Consensus 103 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~G 181 (355)
++||+|||++++++.++..++++++++++|++.++++|+++|++.+...+.....+.+.+ |+++|+++++++.....+|
T Consensus 64 l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g 143 (495)
T PRK14995 64 LGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGG 143 (495)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888888787765 6789999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccCChhHHHhcCChHHHHH------------HHHHHhCC
Q 041698 182 ILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPDTPNSIIERGRHEEARE------------ELRKVRGV 248 (355)
Q Consensus 182 ~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~------------~~~~~~~~ 248 (355)
..+||.+++.+.+ +.+||+.|++...+.++..+. .+++||+++.. +++.+.... ..++.. .
T Consensus 144 ~~~gp~lgg~l~~---~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~-~ 217 (495)
T PRK14995 144 AAFGPLVGGILLE---HFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTAL-K 217 (495)
T ss_pred HHHHHHHHHHhhc---cCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhcc-c
Confidence 9999999999988 578999999887776655443 45567765321 111111100 000000 0
Q ss_pred CccHH-HHH--------HHHHHHHHhhccccch--hhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH-hcCCC
Q 041698 249 NDVEE-EFN--------DLVAASEASRQVEHPW--KNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN-TIGFG 316 (355)
Q Consensus 249 ~~~~~-~~~--------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~ 316 (355)
+.... ... ........+.+.+.+. .++++.+. +....+..+...........+.|.+++ .+|++
T Consensus 218 ~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s 293 (495)
T PRK14995 218 GFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRI----ILSGVVMAMTAMITLVGFELLMAQELQFVHGLS 293 (495)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 00000 000 0000000111111121 23333322 222222222222223344556666665 48999
Q ss_pred CcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 317 SDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
+.+++....+..++..++.++.|++.||+|+|+.+..
T Consensus 294 ~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~ 330 (495)
T PRK14995 294 PLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATG 330 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 9999999999999999999999999999999887653
No 23
>PRK15075 citrate-proton symporter; Provisional
Probab=99.96 E-value=2.7e-28 Score=221.36 Aligned_cols=274 Identities=20% Similarity=0.316 Sum_probs=192.4
Q ss_pred HHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHH-HHHH-----HHHHHHHHHh
Q 041698 26 TCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMF-TSSL-----YLAALLSSLV 99 (355)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~s~~-----~l~~~~~~~~ 99 (355)
......++.+++++|...++.. .|.+.+++ +.+..+.+.+ .+.. .++..+++++
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~--~~~i~~~~------------------~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~ 75 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFY--ATAIAKTF------------------FPAGNEFASLMLTFAVFGAGFLMRPLGAIV 75 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCCCchHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4566777889999999998877 66666666 6666554433 3322 3333578999
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHH--------HHHHHHHHhhhcccccccchhhhhhhcCCCCcccchh
Q 041698 100 ASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIW--------MLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALN 171 (355)
Q Consensus 100 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~ 171 (355)
.|+++||+|||+.++.+.++..+++++++++++++ .++++|+++|++.+...+....++.|++|+++|++.+
T Consensus 76 ~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~ 155 (434)
T PRK15075 76 LGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYT 155 (434)
T ss_pred HHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHH
Confidence 99999999999999999999999999999999877 4689999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCC-----CccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHh
Q 041698 172 IGFQLSITVGILIANVLNYFFNKIH-----GGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVR 246 (355)
Q Consensus 172 ~~~~~~~~~G~~~~~~i~~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 246 (355)
++...+..+|..+++.+++.+.... ++++||+.|++..+...+........||++++...+
T Consensus 156 ~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~-------------- 221 (434)
T PRK15075 156 SWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK-------------- 221 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh--------------
Confidence 9999988888888888777763211 147999999875543322222222234432110000
Q ss_pred CCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHh-cCCCCcHHHHHHH
Q 041698 247 GVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNT-IGFGSDASLMSAV 325 (355)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~ 325 (355)
.+.+.+..+++..+ .++.+...+...+...........+.|.++++ .|++..+.+....
T Consensus 222 -----------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~ 281 (434)
T PRK15075 222 -----------------HRPSMREIFRSLAA---NWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTL 281 (434)
T ss_pred -----------------hccccccHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 00000111111111 12222222222222333455667778887765 7999888888888
Q ss_pred HHHHHHHHHhhhhhheecccCCcccccc
Q 041698 326 ITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 326 ~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
+..++.+++.++.|+++||++||+.++.
T Consensus 282 ~~~~~~~~~~~~~g~l~Dr~g~r~~~~~ 309 (434)
T PRK15075 282 CVGVSNFIWLPIGGALSDRIGRRPVLIA 309 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 8899999999999999999999987654
No 24
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.96 E-value=4.7e-28 Score=221.93 Aligned_cols=307 Identities=12% Similarity=0.148 Sum_probs=215.9
Q ss_pred CChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhccc----ccccccccccccccccCCcchhHHHHHHHHHHHH
Q 041698 19 LTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPS----VYRKQQANESTNQYCQYDSETLTMFTSSLYLAAL 94 (355)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~ 94 (355)
..+..+.++..+.++......|....+.+ .+...++-.+. ...+.+..+..+.|++++..+.|++.+++.+++.
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~ 90 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLT--MVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQI 90 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEE--EEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHH
Confidence 33344555555666666667777776655 33333311000 0001111222344789999999999999999999
Q ss_pred HHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhh
Q 041698 95 LSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA--QAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNI 172 (355)
Q Consensus 95 ~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~ 172 (355)
+++++.|+++||+|||+++.++.++++++.+++.++ .+++.+++.|+++|++.+...+....++.|++|+++|+++++
T Consensus 91 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 170 (465)
T TIGR00894 91 IIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLG 170 (465)
T ss_pred HHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999999999999998887654 558889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcc-chHHHHhhhHHHHHHHHHHhc-cccCChhHHHhcCChHHHHHHHHHHhCCCc
Q 041698 173 GFQLSITVGILIANVLNYFFNKIHGGW-GWRLSLGGAMVPALIITVGSM-ILPDTPNSIIERGRHEEAREELRKVRGVND 250 (355)
Q Consensus 173 ~~~~~~~~G~~~~~~i~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (355)
+...+..+|.++++++++.+.+ .. +||+.|++.+++.++..+..+ +.+|+|+... ...++.++..++.
T Consensus 171 ~~~~~~~~g~~i~~~l~~~l~~---~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~i~~~----- 240 (465)
T TIGR00894 171 MSTSGFQLGTFIFLPISGWLCE---SWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP--CISKFEKKYINSS----- 240 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---ccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC--CCCHHHHHHHHhh-----
Confidence 9999999999999999999887 43 899999998888776655544 4566664211 1111111100000
Q ss_pred cHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH-hcCCCCcHHHHHHHHHHH
Q 041698 251 VEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN-TIGFGSDASLMSAVITGI 329 (355)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~ 329 (355)
.++++.+.+.+.+++++++.+ .++...+..++.....+.+..|.|.+++ .+|++..+++....+..+
T Consensus 241 --------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~ 308 (465)
T TIGR00894 241 --------LQGQKGSTRQSLPIKAIPKSL----PVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYL 308 (465)
T ss_pred --------cccccCCCCCCCCHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHH
Confidence 000000111123455554432 2333344444444455666777787764 589999999999999999
Q ss_pred HHHHHhhhhhheecccCCcc
Q 041698 330 VNVVATMVSIYGVDKWGRRF 349 (355)
Q Consensus 330 ~~~~~~~~~g~l~d~~g~r~ 349 (355)
+.+++.+++|+++||+++|+
T Consensus 309 ~~~i~~~~~g~l~d~~~~~~ 328 (465)
T TIGR00894 309 FAWLCSIFAGYLADFLKSSK 328 (465)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999986553
No 25
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.96 E-value=3.1e-27 Score=218.48 Aligned_cols=317 Identities=17% Similarity=0.238 Sum_probs=217.6
Q ss_pred CCCCCCChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHH
Q 041698 14 EYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAA 93 (355)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~ 93 (355)
.+.++.++..+.....+.++.+.++++....++. +|.+.+++ |+|..+.+++.+.+.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~------------------~~s~~~~~~~~~~~~~~~ 68 (496)
T PRK03893 9 PWYRHLNRAQWKAFSAAWLGYLLDGFDFVLITLV--LTEVQGEF------------------GLTTVQAASLISAAFISR 68 (496)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHH
Confidence 3344444556666777777888888888776655 55555555 999999999999999999
Q ss_pred HHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhH
Q 041698 94 LLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIG 173 (355)
Q Consensus 94 ~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~ 173 (355)
.+++++.|+++||+|||++++++.++.+++.++.+++++++.+++.|++.|++.+...+....++.|++|+++|+++.++
T Consensus 69 ~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 148 (496)
T PRK03893 69 WFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGF 148 (496)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHH
Q 041698 174 FQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEE 253 (355)
Q Consensus 174 ~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (355)
...+..+|..+++.+.+.+.+ .++||+.|++.++..++.+.....+||++++...+++.++..+..+.....+....
T Consensus 149 ~~~~~~~g~~~~~~~~~~l~~---~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (496)
T PRK03893 149 LISGFSIGAVVAAQVYSLVVP---VWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRII 225 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHH
Confidence 999999999999999999887 67899999876554444444445578876543322211111111111100000000
Q ss_pred HH-HHHHH----HHHHhhccccchh-------------hh--hccCchhHHHHHHHHHHHHHcccccchHhcHHHHH-Hh
Q 041698 254 EF-NDLVA----ASEASRQVEHPWK-------------NL--LQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-NT 312 (355)
Q Consensus 254 ~~-~~~~~----~~~~~~~~~~~~~-------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 312 (355)
.. ..... ...........+. .. .....+++.........+..+........+.|.++ ++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~ 305 (496)
T PRK03893 226 NILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTD 305 (496)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 00 00000 0000000000000 00 00011111122222222222222223455677777 47
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 313 IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.|++..+++...+...++.+++.++.|+++||++||+.+..
T Consensus 306 ~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~ 346 (496)
T PRK03893 306 LGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVC 346 (496)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 89999999999999999999999999999999999987653
No 26
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.96 E-value=1.8e-27 Score=212.92 Aligned_cols=236 Identities=19% Similarity=0.255 Sum_probs=182.9
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
.+++|++.++.++..+++.++..+++++.|+++||+|||++++.+.++.+++.++++++++++.+++.|+++|++.+...
T Consensus 47 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 126 (394)
T PRK10213 47 AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFW 126 (394)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHH
Confidence 33449999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSII 230 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~ 230 (355)
+....++.|++|+++|+++.++...+.++|..++|.+++.+.+ ..+||+.|++.+++.++..+.. ...||+|+.
T Consensus 127 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~---~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~-- 201 (394)
T PRK10213 127 AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE---LIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE-- 201 (394)
T ss_pred HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc--
Confidence 9999999999999999999999999999999999999999987 5789999998877665544333 335665421
Q ss_pred hcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH
Q 041698 231 ERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF 310 (355)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (355)
+ ++ .+.+..+.++++ +.+......+...........+..|.+.
T Consensus 202 ---~-~~------------------------------~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 244 (394)
T PRK10213 202 ---P-SH------------------------------QKQNTFRLLQRP---GVMAGMIAIFMSFAGQFAFFTYIRPVYM 244 (394)
T ss_pred ---c-cc------------------------------chhHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 000112233322 2222211111111111122233457777
Q ss_pred HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcc
Q 041698 311 NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRF 349 (355)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~ 349 (355)
++.|+++...+......+++.+++.++.+++.||.+++.
T Consensus 245 ~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~ 283 (394)
T PRK10213 245 NLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLA 283 (394)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 788999999999999999999999999999999965443
No 27
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.96 E-value=1.4e-27 Score=213.25 Aligned_cols=237 Identities=15% Similarity=0.204 Sum_probs=183.4
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
+|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+..
T Consensus 33 ~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 112 (382)
T PRK10091 33 VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVG 112 (382)
T ss_pred cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccCChhHHHhcC
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPDTPNSIIERG 233 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~ 233 (355)
..++.|++++++|+++++....+..+|..+++.+++.+.+ ..+||+.|++.+++.++..+. .+++||.++. .
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~----~ 185 (382)
T PRK10091 113 AIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ---EFSWRYTFLLIAVFNIAVLASIYFWVPDIRDE----A 185 (382)
T ss_pred HHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh---hccHHHHHHHHHHHHHHHHHHHHHhCCCCCcc----c
Confidence 8999999999999999999999999999999999998877 568999999888876655443 3457775420 0
Q ss_pred ChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhc
Q 041698 234 RHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTI 313 (355)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (355)
+ .+ . ++.+ +.++++ +.+.......+..........+..|++.+..
T Consensus 186 ~-~~-------------~-----------------~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (382)
T PRK10091 186 K-GG-------------L-----------------REQF-HFLRSP---APWLIFAATMFGNAGVFAWFSYIKPYMMFIS 230 (382)
T ss_pred c-cC-------------H-----------------HHHH-HHhcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 00 0 0001 111221 1122221111111111112233345555568
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 314 GFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 314 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
|+++.+.+.......++.+++.++.+++.||+++|+.+..
T Consensus 231 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~ 270 (382)
T PRK10091 231 GFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAV 270 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHH
Confidence 9999999999999999999999999999999999887653
No 28
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.95 E-value=5.2e-27 Score=210.11 Aligned_cols=239 Identities=13% Similarity=0.108 Sum_probs=183.5
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
++|+|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+++++++|++.++++|+++|++.+...
T Consensus 36 ~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~ 115 (393)
T PRK09705 36 RQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQ 115 (393)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHh
Confidence 33349999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccc-cCChhHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMIL-PDTPNSII 230 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~ 230 (355)
+....++.+++| ++|+++++.+..+..+|..+++.+++.+.+.. .+||+.+.+.++..++.....+.. ++.|+
T Consensus 116 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 189 (393)
T PRK09705 116 AVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS--ETWYQTLAWWALPAVVALFAWWWQSAREVA--- 189 (393)
T ss_pred hhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHhcCCCc---
Confidence 999999999997 78999999999999999999999999887621 379998876555544333332222 12111
Q ss_pred hcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH
Q 041698 231 ERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF 310 (355)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (355)
++ + ++ +....+.+++ ++.+...+ ..+.....+.....+.|.++
T Consensus 190 -----~~-------------------------~-~~--~~~~~~~l~~---~~~~~l~~-~~~~~~~~~~~~~~~lp~~l 232 (393)
T PRK09705 190 -----SS-------------------------H-KT--TTTPVRVVFT---PRAWTLGV-YFGLINGGYASLIAWLPAFY 232 (393)
T ss_pred -----cc-------------------------c-CC--CcCCcccccC---HhHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 00 0 00 0011112222 22222222 22222334445666777777
Q ss_pred HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 311 NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
+++|++..+++....+..++.++++++.+++.||++||+..+.
T Consensus 233 ~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~ 275 (393)
T PRK09705 233 IEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLML 275 (393)
T ss_pred HHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Confidence 7899999999999999999999999999999999999887653
No 29
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.95 E-value=3.1e-27 Score=210.26 Aligned_cols=287 Identities=15% Similarity=0.052 Sum_probs=193.6
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHH
Q 041698 5 GGFDKGNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTM 84 (355)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 84 (355)
..|||||+.-+.++-++-.+.......++.+.....-...++. .+.+. ++|+|+|.+|.++
T Consensus 14 ~~w~pe~~~~w~~~~~~~a~r~l~~s~~~f~~~F~~w~~~~~l--~~~~~-----------------~~~~~ls~~q~g~ 74 (462)
T PRK15034 14 RDWKPENPAFWENKGKHIARRNLWISVSCLLLAFCVWMLFSAV--TVNLN-----------------KIGFNFTTDQLFL 74 (462)
T ss_pred cCCCCCChHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhh-----------------hhhcCCCHHHHHH
Confidence 6789998877665544422222333333222222222222222 22221 2256999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHhhhcccccccchhhhhh
Q 041698 85 FTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA-----QAIWMLIVGRLLLGFGIGFANQSVPLYLS 159 (355)
Q Consensus 85 ~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~~~ 159 (355)
+.+++.+++.++.++.|++.||+|.|+++.++.++..+.++..+++ ++++.+++.|++.|++ +..++.....++
T Consensus 75 l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs 153 (462)
T PRK15034 75 LTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNIS 153 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987 8999999999999998 778899999999
Q ss_pred hcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhh-----cC----------CCccchHHHHhhhHHHHHHHHHHhcc-cc
Q 041698 160 EMAPYRFRGALNIGFQLSITVGILIANVLNYFFN-----KI----------HGGWGWRLSLGGAMVPALIITVGSMI-LP 223 (355)
Q Consensus 160 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~-----~~----------~~~~~w~~~~~~~~~~~~~~~~~~~~-~~ 223 (355)
+|+|+++||+++++.....++|..+++++...+. .. .+..+||..+++..++.++..+..++ ++
T Consensus 154 ~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~ 233 (462)
T PRK15034 154 FFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMN 233 (462)
T ss_pred HHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999997666777766555544322 10 01345888887777766655544443 44
Q ss_pred CChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchH
Q 041698 224 DTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIM 303 (355)
Q Consensus 224 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (355)
+.|. ++...++..+.+|.++ .++. .+..++.+..+..+.
T Consensus 234 ~~~~-------------------------------------~~~~~~~~~~vlk~~~---~Wll-slly~~tFG~fvg~s 272 (462)
T PRK15034 234 DIAS-------------------------------------SRASIADQLPVLQRLH---LWLL-SLLYLATFGSFIGFS 272 (462)
T ss_pred Cccc-------------------------------------cccCHHHHHHHhCCCc---hhHH-HHHHHHHHHHHHHHH
Confidence 3321 0000111223333333 2333 333345555566677
Q ss_pred hcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 304 FYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 304 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.+.|++.++ .++.........+..+...+.++++|+++||+|+++++.+
T Consensus 273 ~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~ 321 (462)
T PRK15034 273 AGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLI 321 (462)
T ss_pred HHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHH
Confidence 788887765 3444433333445568888999999999999999987654
No 30
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.95 E-value=3e-27 Score=208.70 Aligned_cols=235 Identities=12% Similarity=0.012 Sum_probs=170.3
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
++|+|+|..+.+++.+++.+++.+++++.|+++||+|||+++..+......+.+.....++++.++++|+++|++.+. .
T Consensus 18 ~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~-~ 96 (368)
T TIGR00903 18 AEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF-L 96 (368)
T ss_pred HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH-H
Confidence 344499999999999999999999999999999999999887666555544433333347999999999999999986 5
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHH-HhccccCChhHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITV-GSMILPDTPNSII 230 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~ 230 (355)
+.....++|++|+++|++++++...+..+|.+++++++..+.+ +.+||+.|++.++++++..+ ..+++||+|++..
T Consensus 97 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~---~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~ 173 (368)
T TIGR00903 97 LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT---AGGLQLLIIPIAAVAAAGIILVLAALPALPFQAA 173 (368)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 5666667999999999999999999999999999999999987 57899999997777665544 4466899875421
Q ss_pred hcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH
Q 041698 231 ERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF 310 (355)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (355)
+..+ . ++ . .++++++++++. ++......++.....+.+..|.|.++
T Consensus 174 ---~~~~---------------~--~~-----~-----~~~~~~ll~~~~----~~~~~~~~~~~~~~~~~~~~wlp~~L 219 (368)
T TIGR00903 174 ---EGFG---------------F--KD-----A-----VKEFGALAGRKD----LWIIGAILGFGVALFDNLAIWLEAAL 219 (368)
T ss_pred ---CCcc---------------h--HH-----H-----HHHHHHHHcChh----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 00 0 012445555433 23333334444455667778999999
Q ss_pred HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCc
Q 041698 311 NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRR 348 (355)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r 348 (355)
++.|++.. .+.......+.+.++ .++++||..||
T Consensus 220 ~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~ 253 (368)
T TIGR00903 220 RPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARA 253 (368)
T ss_pred HHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhh
Confidence 88888754 555555555555555 46788887654
No 31
>PRK03699 putative transporter; Provisional
Probab=99.95 E-value=1e-26 Score=208.55 Aligned_cols=267 Identities=10% Similarity=0.107 Sum_probs=201.1
Q ss_pred HHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhh
Q 041698 26 TCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTR 105 (355)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d 105 (355)
....++++.+..+++....+.. +|.+.+++ |+|.++.+++.+.+.+++.+++++.|+++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~g~~--~~~i~~~~------------------~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d 67 (394)
T PRK03699 8 LTWISFLSYALTGALVIVTGMV--MGPIAEYF------------------NLPVSSMSNTFTFLNAGILISIFLNAWLME 67 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh--hHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566677777776666655 56666555 999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHH
Q 041698 106 QFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIA 185 (355)
Q Consensus 106 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~ 185 (355)
|+|||+++..+.++.+++.++.+++++++.+++.|+++|++.+...+....++.|++|+++|++.++.......+|..++
T Consensus 68 r~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~ 147 (394)
T PRK03699 68 IIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIF 147 (394)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Q 041698 186 NVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEAS 265 (355)
Q Consensus 186 ~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (355)
|.+.+.+... ..+||+.|.+.+++.++..+..++ .+.|+. .+.+. + +.+
T Consensus 148 ~~~~~~l~~~--~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~~-~-------------------------~~~ 196 (394)
T PRK03699 148 PIIAAYLLAR--SIEWYWVYACIGLVYVAIFILTLF-SEFPAL--GKHAP-K-------------------------ADK 196 (394)
T ss_pred HHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccCc-c-------------------------ccC
Confidence 9988877542 358999999877766554443332 222210 00000 0 000
Q ss_pred hccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecc
Q 041698 266 RQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDK 344 (355)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 344 (355)
+. .+....++ ++...+..++.......+..|.|.+. +++|+++.+++...+...++..+++++.++++||
T Consensus 197 ~~--------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr 267 (394)
T PRK03699 197 PV--------AKEKWGIG-VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF 267 (394)
T ss_pred cc--------ccccCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01111122 22222223333333445567778777 4579999999999999999999999999999999
Q ss_pred cCCccccc
Q 041698 345 WGRRFLFL 352 (355)
Q Consensus 345 ~g~r~~~~ 352 (355)
+++|+.+.
T Consensus 268 ~~~~~~l~ 275 (394)
T PRK03699 268 FDLQRILT 275 (394)
T ss_pred hchhhHHH
Confidence 99998765
No 32
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.95 E-value=1.9e-27 Score=213.29 Aligned_cols=259 Identities=17% Similarity=0.154 Sum_probs=193.0
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
++++|++..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++++++++++.++++|++.|++.+...
T Consensus 21 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 100 (399)
T TIGR00893 21 QEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFF 100 (399)
T ss_pred HHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhh
Confidence 34449999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSII 230 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~ 230 (355)
+....++.|++|+++|++.+++......+|..+++.+++.+.+ ..+||+.|++.+++.++..+.. +..||+|+..
T Consensus 101 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 176 (399)
T TIGR00893 101 PGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI---HFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKA- 176 (399)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH---hCCchHHHHHHHHHHHHHHHHhhheecCCCCcc-
Confidence 9999999999999999999999999999999999999998877 5689999998887766655444 4456655321
Q ss_pred hcCChHHHHHH-HHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHH
Q 041698 231 ERGRHEEAREE-LRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVL 309 (355)
Q Consensus 231 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
+...++.++. .++... + .+.+++++.++...++.+++ ++ ++...+..+...........+.|.+
T Consensus 177 -~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (399)
T TIGR00893 177 -KWLTEEEKYIVVGGLLA--E--------QQGKGPSTPKKYQIKELLKD---RR-VWGLALGQFLVNIGLGFFLTWFPTY 241 (399)
T ss_pred -ccCCHHHHhhcchhhcc--c--------cccccccCCCccchHHHhcC---HH-HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1111111100 000000 0 00001111112223333332 22 2333333333334445556666766
Q ss_pred H-HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcc
Q 041698 310 F-NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRF 349 (355)
Q Consensus 310 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~ 349 (355)
. +..|+++.+.+.......++.+++.++.+++.||++||+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 282 (399)
T TIGR00893 242 LVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG 282 (399)
T ss_pred HHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6 457888889999999999999999999999999999986
No 33
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.95 E-value=1.2e-26 Score=214.09 Aligned_cols=298 Identities=17% Similarity=0.189 Sum_probs=211.7
Q ss_pred HHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhh
Q 041698 27 CIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQ 106 (355)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr 106 (355)
...++++.+...+|....++. +|.+.+++ |.+..+.+++.+.+.++..++.++.|+++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~------------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr 63 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVA--IPTIAGDL------------------GSSLSQVQWVITSYMLANAISIPLTGWLAKR 63 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHhc------------------CCChhhhhHHHHHHHHHHHHHHHhHHHHHHH
Confidence 445556677777877777655 66666665 8899999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHH
Q 041698 107 FGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIAN 186 (355)
Q Consensus 107 ~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 186 (355)
+|||++++++.++..++.++++++++++.++++|+++|++.+...+....++.|++|+++|+++.+++..+..+|..++|
T Consensus 64 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 143 (485)
T TIGR00711 64 FGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGP 143 (485)
T ss_pred hCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHHhcCChHHHHH------------HHHHHhCCCccHH
Q 041698 187 VLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSIIERGRHEEARE------------ELRKVRGVNDVEE 253 (355)
Q Consensus 187 ~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 253 (355)
.+++.+.+ +++||+.|++.+.+.++..+.. +++||+++. .+++.+.... ...+.......+.
T Consensus 144 ~~~~~l~~---~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 218 (485)
T TIGR00711 144 TLGGWIIE---NYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDS 218 (485)
T ss_pred ccHhHhcc---CcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCc
Confidence 99999887 6789999998877766555443 446665431 1111111110 0000000000000
Q ss_pred -HHHHH--------H--HHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHh-cCCCCcHHH
Q 041698 254 -EFNDL--------V--AASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNT-IGFGSDASL 321 (355)
Q Consensus 254 -~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~ 321 (355)
+.... . ...+..++++....++++.+..... ... .+...........+.|.++++ .|+++.+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g 294 (485)
T TIGR00711 219 NEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIG---CVY-MSLLGLGLYGSFYLLPLYLQQVLGYTALQAG 294 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHH---HHH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 00000 0 0001111111111233333322222 222 222222233445566766654 799999999
Q ss_pred HHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 322 MSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 322 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
....+..++.+++.++.|++.||++||+.+.+
T Consensus 295 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~ 326 (485)
T TIGR00711 295 LHILPVGLAPMLSSPIAGRMGDKIDPRKLVTI 326 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHH
Confidence 99999999999999999999999999987654
No 34
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.6e-26 Score=207.10 Aligned_cols=253 Identities=18% Similarity=0.271 Sum_probs=208.1
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHhhhcccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ--AIWMLIVGRLLLGFGIGF 149 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~ 149 (355)
+.++++|..+.+++.++++.|+.+++++.|+++||+|-|+++..+.++.++++++..++. +++.+++.|+++|++.|.
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence 568999999999999999999999999999999999999999999999999999999875 456789999999999999
Q ss_pred cccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc-cccCChhH
Q 041698 150 ANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM-ILPDTPNS 228 (355)
Q Consensus 150 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~e~~~~ 228 (355)
.+|+...+.++|.|++||++..++..++..+|.+++.++++.+.+. ..||+++|++.++++++..++++ +..|+|..
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s--~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~ 222 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES--SLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK 222 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc--CCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 9999999999999999999999999999999999999999999883 27999999999999888777764 45777753
Q ss_pred HHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHH---HhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhc
Q 041698 229 IIERGRHEEAREELRKVRGVNDVEEEFNDLVAASE---ASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFY 305 (355)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (355)
. +.-.++.++ .+.+.+. .+++.+.+++++++++ .++...+..++.......+..|
T Consensus 223 h--~~is~~El~----------------~I~~~k~~~~~~~~~~vP~~~i~ts~----~vwai~~~~f~~~~~~~~l~~y 280 (466)
T KOG2532|consen 223 H--PNISEKELK----------------YIEKGKSEAHVKKKPPVPYKAILTSP----PVWAIWISAFGGNWGFYLLLTY 280 (466)
T ss_pred C--CCCCHHHHH----------------HHHhcccccccCCCCCCCHHHHHcCH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111111111 1111111 1111356788887764 3555555566666667788888
Q ss_pred HHHHHHh-cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCc
Q 041698 306 APVLFNT-IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRR 348 (355)
Q Consensus 306 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r 348 (355)
.|.|+++ +|++..+.|++.+++.+...+..+++|.++||+.+|
T Consensus 281 ~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~ 324 (466)
T KOG2532|consen 281 LPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR 324 (466)
T ss_pred hhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888865 899999999999999999999999999999998775
No 35
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.95 E-value=9.5e-27 Score=208.32 Aligned_cols=239 Identities=15% Similarity=0.203 Sum_probs=185.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.|..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+...++++++.+++.|++.|++.+...+...
T Consensus 36 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 115 (385)
T TIGR00710 36 STPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQ 115 (385)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHHhcCC
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSIIERGR 234 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~ 234 (355)
.++.|++|+++|+++.++......+|..+++.+++.+.+ ..+||+.|++.++..++..+.. ++.||+++.. ++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 189 (385)
T TIGR00710 116 ALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV---WLSWHAIFAFLSLAGILLSALIFFILPETLPYE---AR 189 (385)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc---cc
Confidence 999999999999999999999999999999999998877 5689999998777766554443 4466654210 00
Q ss_pred hHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH-Hhc
Q 041698 235 HEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-NTI 313 (355)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 313 (355)
++ .+ +..+.+++.++++..+........ ..........+.|.+. +++
T Consensus 190 -~~-------------~~--------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 237 (385)
T TIGR00710 190 -IQ-------------IS--------------TYFETFLLLLKSKMFWGYALIYGA----SFGGFFAFFSGAPFVYIDIM 237 (385)
T ss_pred -CC-------------HH--------------HHHHHHHHHHcCchhHHHHHHHHH----HHHHHHHHHHcChHHHHHHc
Confidence 00 00 000112233333322221111111 1112233444556555 468
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 314 GFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 314 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
|+++.+.+.......++.+++.++.+++.||+++|+.+.
T Consensus 238 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~ 276 (385)
T TIGR00710 238 GVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLR 276 (385)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999999999999999999987654
No 36
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.95 E-value=6.1e-27 Score=208.75 Aligned_cols=244 Identities=17% Similarity=0.131 Sum_probs=181.3
Q ss_pred ccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccccc
Q 041698 73 QYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQ 152 (355)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 152 (355)
+|+|+|..+.+++.+++.+++.+++++.|+++||+|||+++.++.++.+++.++++++++++.++++|++.|++.+..++
T Consensus 31 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 110 (377)
T TIGR00890 31 RYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYG 110 (377)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33499999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred chhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHHh
Q 041698 153 SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSIIE 231 (355)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~ 231 (355)
.....+.|++| ++|+++.++...+.++|..+++.+.+.+.+ ..+||+.|++.+++.++..+.. ++++|+|+...
T Consensus 111 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~- 185 (377)
T TIGR00890 111 IALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVIN---LEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLI- 185 (377)
T ss_pred hHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHHheecCchhcc-
Confidence 88888899986 679999999999999998877666666655 4689999998888776655544 34554432100
Q ss_pred cCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH
Q 041698 232 RGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN 311 (355)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (355)
+++ + +.+ +++.+.++.++++..+... ...+...........+.+.+.+
T Consensus 186 ~~~-~-------------~~~--------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 233 (377)
T TIGR00890 186 KTN-I-------------EVS--------------VKDYTVWEMLRTPQFWVLY----LSFFLNAVSGLLLIGLYKPYGQ 233 (377)
T ss_pred ccC-c-------------ccc--------------hhhhhHHHHHcCccHHHHH----HHHHHHhHHHHHHHHHHHHHHH
Confidence 000 0 000 0001122333333222211 1112221222223334455567
Q ss_pred hcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 312 TIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
+.|.++.+.+.......++.++++++.+++.||++||+.+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~ 275 (377)
T TIGR00890 234 SLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSI 275 (377)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 788888888899999999999999999999999999987654
No 37
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.95 E-value=2.8e-27 Score=212.34 Aligned_cols=289 Identities=16% Similarity=0.149 Sum_probs=220.0
Q ss_pred HHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhh
Q 041698 23 VLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASR 102 (355)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~ 102 (355)
.+.++..+++.++....|...++.... ..+++|.+....+.+.+.++++++++++.++++.
T Consensus 43 dl~i~~~~~~~y~~~~~d~~si~~a~l-------------------~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~ 103 (495)
T KOG2533|consen 43 DLFILPFLCYLYFHAYLDKSSIVNASL-------------------SGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGL 103 (495)
T ss_pred HHHHHHHHHHHHHHHhcchhcchhHHH-------------------cCCccccchhhhhhhhHHHHHHHHHHHHHhhHHH
Confidence 345555556666666666666544321 1246777899999999999999999999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHH
Q 041698 103 VTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGI 182 (355)
Q Consensus 103 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 182 (355)
+.||++..+.+....+.+++..++....+|++.+++.|++.|+.++..+|....+++.|+.+++|++.++++.+..++|.
T Consensus 104 L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~ 183 (495)
T KOG2533|consen 104 LGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGN 183 (495)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhh
Confidence 99999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCC---CccchHHHHhhhHHHHHHHHHH-hccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHH
Q 041698 183 LIANVLNYFFNKIH---GGWGWRLSLGGAMVPALIITVG-SMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDL 258 (355)
Q Consensus 183 ~~~~~i~~~~~~~~---~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (355)
++|++++..+.+.. +..||||.|++.++++++..+. ++++|+.|....-.++ +|..-..++.++.+
T Consensus 184 i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~-~ek~~~~~~~~~~~--------- 253 (495)
T KOG2533|consen 184 IFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTD-EEKELVVERLRESP--------- 253 (495)
T ss_pred HHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccch-HHHHHHHHHHHhcc---------
Confidence 99999999964322 2479999999999998876654 5678999863211111 11110011111000
Q ss_pred HHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHh-cCCCCcHHHHHHHHHHHHHHHHhhh
Q 041698 259 VAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNT-IGFGSDASLMSAVITGIVNVVATMV 337 (355)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 337 (355)
.....++.++.++.+..+.++ ++...++.++.....+.+.+|.|.++++ .|++..++..+.++..++++++.++
T Consensus 254 ----~~~~~~~~~~~~~~~a~~dp~-vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ 328 (495)
T KOG2533|consen 254 ----SGGIENKFKWKGFKEALKDPG-VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLIL 328 (495)
T ss_pred ----CCCcccccCHHHHHHHHhchh-HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHH
Confidence 000001123333333333333 5555666667777788899999999987 6699999999999999999999999
Q ss_pred hhheeccc
Q 041698 338 SIYGVDKW 345 (355)
Q Consensus 338 ~g~l~d~~ 345 (355)
+|.++||.
T Consensus 329 ag~lsdr~ 336 (495)
T KOG2533|consen 329 AGYLSDRL 336 (495)
T ss_pred HHHHHHHH
Confidence 99999994
No 38
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.95 E-value=1.7e-26 Score=211.34 Aligned_cols=248 Identities=15% Similarity=0.118 Sum_probs=173.9
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
++|+|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.++++|++.|++.+...
T Consensus 63 ~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~ 142 (476)
T PLN00028 63 RDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV 142 (476)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH
Confidence 33449999999999999999999999999999999999999999999999999999999999999999999999887643
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc----C--CCccchHHHHhhhHHHHHHHHHHhcccc-C
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK----I--HGGWGWRLSLGGAMVPALIITVGSMILP-D 224 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~----~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~-e 224 (355)
....++.|++|+++|++++++.....++|..+++.+...+.. . .+..+||+.|++.+++.++..+..++++ +
T Consensus 143 -~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~ 221 (476)
T PLN00028 143 -SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQD 221 (476)
T ss_pred -HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 456688999999999999999987777777777665544321 1 0124899999998888776655554444 3
Q ss_pred ChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHh
Q 041698 225 TPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMF 304 (355)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (355)
.|+. +.++. ++ +.+. ++......+++.++.+. .+..... ++...........
T Consensus 222 ~p~~-----~~~~~----~~---~~~~------------~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~ 273 (476)
T PLN00028 222 LPDG-----NYREL----KK---SGTM------------PKDSFSKVLRYGVTNYR---TWILALT-YGYSFGVELTMDN 273 (476)
T ss_pred CCCC-----chhhH----Hh---cCcc------------ccccHHHHHHHHHcCch---hHHHHHH-HHHHHHHHHHHHh
Confidence 3321 00000 00 0000 00000011223333222 2222222 2222222223444
Q ss_pred cHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCc
Q 041698 305 YAPVLF-NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRR 348 (355)
Q Consensus 305 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r 348 (355)
+.|.++ ++.|++...++....+..++.++++++.|+++||++||
T Consensus 274 ~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r 318 (476)
T PLN00028 274 IIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARR 318 (476)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 556555 55799999999999999999999999999999999876
No 39
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.95 E-value=4.3e-26 Score=205.42 Aligned_cols=277 Identities=13% Similarity=0.068 Sum_probs=204.7
Q ss_pred ChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHh
Q 041698 20 TPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLV 99 (355)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~ 99 (355)
+++.+...+...+..+...++...+.+. +|.+.+++ |+|..+.++..+.+.+++.+++++
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~------------------~~s~~~~~~~~~~~~~~~~~~~~~ 67 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPG--MLAVVEDF------------------NAGAEWVPTSMTAYLAGGMFLQWL 67 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcc--hHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666777767766666655 56666665 899999999999999999999999
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHH
Q 041698 100 ASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSIT 179 (355)
Q Consensus 100 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 179 (355)
.|+++||+|||+++.++.++.+++.+.+.++++++.+++.|+++|++.+...+....++.|.+|+++|.+..++......
T Consensus 68 ~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 147 (406)
T PRK15402 68 LGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVAL 147 (406)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888889999999999999999999988888
Q ss_pred HHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHH
Q 041698 180 VGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDL 258 (355)
Q Consensus 180 ~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (355)
+|..++|.+++.+.+ ..+||+.|++.++..++..+.. +..||+++... +..+ .++
T Consensus 148 ~~~~~g~~i~~~l~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----------------~~~- 203 (406)
T PRK15402 148 LAPLLGPLVGAALIH---VLPWRGMFVLFAALAALSFFGLWRAMPETAGRVG---EKLS-----------------LKE- 203 (406)
T ss_pred HHHHHHHHHHHHHHH---ccCccHHHHHHHHHHHHHHHHHHHhCCCCCcccc---cccc-----------------HHH-
Confidence 999999999998877 5689999998877766655433 44676643100 0000 000
Q ss_pred HHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHhhh
Q 041698 259 VAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-NTIGFGSDASLMSAVITGIVNVVATMV 337 (355)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~ 337 (355)
..++++..++++.. +.......+.. ........+.|.++ +++|+++.+.+.......++.+++.++
T Consensus 204 ---------~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~ 270 (406)
T PRK15402 204 ---------LGRDYKLVLKNRRF---VAGALALGLVS-LPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLT 270 (406)
T ss_pred ---------HHHHHHHHHcCcHH---HHHHHHHHHHH-HHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 01112333333322 22222111111 11122333455554 558999888888888888889999999
Q ss_pred hhheecccCCcccccc
Q 041698 338 SIYGVDKWGRRFLFLE 353 (355)
Q Consensus 338 ~g~l~d~~g~r~~~~~ 353 (355)
.+++.||+++|+.+.+
T Consensus 271 ~g~l~~r~~~~~~~~~ 286 (406)
T PRK15402 271 LARLTSRRPLRSLIRM 286 (406)
T ss_pred HHHHHHhcCHHHHHHH
Confidence 9999999999887643
No 40
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.94 E-value=6.5e-26 Score=204.08 Aligned_cols=264 Identities=13% Similarity=0.121 Sum_probs=192.8
Q ss_pred HHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 041698 28 IVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQF 107 (355)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~ 107 (355)
....+..+....+...+.+. +|.+.+++ |.+..+.++..+++.+++.+++++.|+++||+
T Consensus 19 ~~~~~~~~~~~~~~~~~~p~--l~~i~~~~------------------~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~ 78 (413)
T PRK15403 19 MALILYDFAAYLTTDLIQPG--IINVVRDF------------------NADVSLAPASVSLYLAGGMALQWLLGPLSDRI 78 (413)
T ss_pred HHHHHHHHHHHHHHHhhccC--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc
Confidence 33344445555555555555 55555555 88999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHH
Q 041698 108 GRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANV 187 (355)
Q Consensus 108 Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 187 (355)
|||++++.+.+++++++++++++++++.++++|+++|++.+...+....++.|++|+++|++.+++...+..+|..++|.
T Consensus 79 Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 158 (413)
T PRK15403 79 GRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPL 158 (413)
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988767777788999999999999999999999999999999
Q ss_pred HHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhh
Q 041698 188 LNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASR 266 (355)
Q Consensus 188 i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (355)
+++.+.+ ..+||+.|++.+++.++..+. .+.+||+++. +++..+ . +
T Consensus 159 lg~~l~~---~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~~--------------~-------------~ 205 (413)
T PRK15403 159 SGAALMH---FVHWKVLFAIIAVMGLIAFVGLLLAMPETVKR---GAVPFS--------------A-------------K 205 (413)
T ss_pred HHHHHHH---hcCHHHHHHHHHHHHHHHHHHHHHhCCCCccc---cCCCCC--------------h-------------H
Confidence 9998886 568999999988876665544 4457886531 000000 0 0
Q ss_pred ccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHh-cCCCCcHHHHHHHHHHHHHHHHhhhhhheecc-
Q 041698 267 QVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNT-IGFGSDASLMSAVITGIVNVVATMVSIYGVDK- 344 (355)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~- 344 (355)
...+.++.+++++ +.+. ..+..+........+..+.|.+.++ .|+++.+.++.......+..++..+.+++.++
T Consensus 206 ~~~~~~~~ll~~~---~~~~-~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~ 281 (413)
T PRK15403 206 SVLRDFRNVFRNR---LFLT-GAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP 281 (413)
T ss_pred HHHHHHHHHHcCH---HHHH-HHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 0011233334332 2222 2222222222333455566766655 68999999998888888888888888776544
Q ss_pred cCCc
Q 041698 345 WGRR 348 (355)
Q Consensus 345 ~g~r 348 (355)
.++|
T Consensus 282 ~~~~ 285 (413)
T PRK15403 282 TEPR 285 (413)
T ss_pred Cchh
Confidence 4444
No 41
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.94 E-value=2.7e-26 Score=203.76 Aligned_cols=245 Identities=14% Similarity=0.105 Sum_probs=184.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ-----AIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~g~~ 150 (355)
+.+..+.+++.+++.++..+++++.|+++||+|||++++.+.++..++.++.++.+ +++.+++.|++.|++.+..
T Consensus 30 ~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 109 (365)
T TIGR00900 30 TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFF 109 (365)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 77999999999999999999999999999999999999999999999998888888 9999999999999999999
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccc--cCChhH
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMIL--PDTPNS 228 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~e~~~~ 228 (355)
.+...+++.|++|+++|+++.++...+..+|.+++|.+++.+.+ ..+||+.|++.++..++..+..+.+ ||+++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (365)
T TIGR00900 110 TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA---TLGIKWAIWVDAVGFAISALLIVSVRIPELAAS 186 (365)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Confidence 99999999999999999999999999999999999999999987 5689999988776655544443333 332210
Q ss_pred HHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHH
Q 041698 229 IIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPV 308 (355)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (355)
++.+.. ++. .++.++.++..++++..+......++ ...........+.|+
T Consensus 187 ----~~~~~~-------------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 236 (365)
T TIGR00900 187 ----EIQALS-------------NAV----------LRDTREGIKFVLKNPLLRTLLLLALL---FNLVFAPAIVALFPY 236 (365)
T ss_pred ----cccccc-------------hhH----------HHHHHhHHHHHHcCcHHHHHHHHHHH---HHHHHHHHHHHHhHH
Confidence 000000 000 00001123334443332222222121 111111222356677
Q ss_pred HHHh-cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 309 LFNT-IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 309 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
+.++ +|.++.+.+.......++.+++.++.+++.||.+||+.+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 282 (365)
T TIGR00900 237 VQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTG 282 (365)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 7765 79999999999999999999999999999999999887653
No 42
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.94 E-value=1.1e-26 Score=207.35 Aligned_cols=252 Identities=16% Similarity=0.187 Sum_probs=182.2
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|+|..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++.+++++++.+++.|++.|++.+...+...
T Consensus 26 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 105 (379)
T TIGR00881 26 GLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCG 105 (379)
T ss_pred CCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHH-HHHHHhhcCCCccchHHHHhhhHHHHHHHHH-HhccccCChhHHHhcC
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIAN-VLNYFFNKIHGGWGWRLSLGGAMVPALIITV-GSMILPDTPNSIIERG 233 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~-~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~ 233 (355)
+++.|++|+++|+++.++...+..+|..+++ .++..+.+ ..+||+.|++.+++.++..+ ..++.+|+|+....+.
T Consensus 106 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (379)
T TIGR00881 106 RTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE---LYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPP 182 (379)
T ss_pred HHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCc
Confidence 9999999999999999999999999999999 46666655 46899999888777655443 3455677654211111
Q ss_pred ChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH-Hh
Q 041698 234 RHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-NT 312 (355)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 312 (355)
..++.. ++.+.+ ..+.+++.+..+...+.+++.+. ++...+..+...........+.|.+. +.
T Consensus 183 ~~~~~~---------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (379)
T TIGR00881 183 AEEMPN---------EEPDGD---AEKKEEELTKKQIFLQYVLLNKV----LWYISLGYVFVYVVRTGILDWSPLYLTQE 246 (379)
T ss_pred cccCcc---------cccccc---cccccccccchHHHHHHHHhcch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 000000 00000000011112233333332 22222222222223334555666665 45
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccC
Q 041698 313 IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWG 346 (355)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 346 (355)
.|+++.+.+.......++.+++.++.+++.||..
T Consensus 247 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~ 280 (379)
T TIGR00881 247 KGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLF 280 (379)
T ss_pred hCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHc
Confidence 7999999999999999999999999999999863
No 43
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.94 E-value=9.7e-27 Score=205.62 Aligned_cols=249 Identities=24% Similarity=0.420 Sum_probs=186.0
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
.+++|.|..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++..++++++.++++|++.|++.+...
T Consensus 24 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 103 (352)
T PF07690_consen 24 AEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFS 103 (352)
T ss_dssp HCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccccccc
Confidence 44559999999999999999999999999999999999999999999999997777777888899999999999999999
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccCChhHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPDTPNSII 230 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~ 230 (355)
+....++.|++|+++|++.+++...+..+|.+++|.+++.+.+ ..+||+.|++.+++.++..++ ..+++++++...
T Consensus 104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~ 180 (352)
T PF07690_consen 104 PASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS---YFGWRWAFLISAILSLIAAILFILFLPEPPPPRE 180 (352)
T ss_dssp HHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT
T ss_pred ccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh---ccccccccccccchhhhhhhhHhhhhhhcccccc
Confidence 9999999999999999999999999999999999999999986 578999999998887776654 344544432111
Q ss_pred hcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhcccc-chhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHH
Q 041698 231 ERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEH-PWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVL 309 (355)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
.+.+.++. ++.++... .++.+++++..+..+.. .+...........+.|.+
T Consensus 181 ~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 232 (352)
T PF07690_consen 181 RESPKESE------------------------SKKPKPLKPGFKSLFKNPVLWILLIA----FFLFFFVFSGFSFFLPLY 232 (352)
T ss_dssp --SSTTTT--------------------------HHHCCCH-CTHHHHHHCCHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred cccccccc------------------------cccccccccccccccccchhhhhhhh----hhHHHHHHHHhhcccchh
Confidence 11100000 00011111 13334333322211222 222222233466777776
Q ss_pred -HHhcCCC-CcHHHHHHHHHHHHHHHHhhhhhheecccCCcccc
Q 041698 310 -FNTIGFG-SDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLF 351 (355)
Q Consensus 310 -~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~ 351 (355)
.+++|++ ..+.+.......+..+++.++.+++.||+++|+..
T Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 276 (352)
T PF07690_consen 233 LQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRL 276 (352)
T ss_dssp CCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 5678888 68888899999999999999999999999986554
No 44
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.2e-27 Score=205.23 Aligned_cols=277 Identities=17% Similarity=0.283 Sum_probs=205.4
Q ss_pred HHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhh
Q 041698 23 VLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASR 102 (355)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~ 102 (355)
....+.+.++...++..|...+... .+. .++.+|++++..|++++.+.+.+++.+|+.|+
T Consensus 31 ~~~~l~il~~vnlmny~Dr~~iagv--~~~------------------v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gy 90 (493)
T KOG1330|consen 31 PTLTLVILCLVNLMNYADRYTIAGV--LKE------------------VQTYFNISDSELGLLQTVFIVVFMIASPLFGY 90 (493)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhh--hHH------------------HHHhcCCCchhccchhHHHHHHHHHHHHHHHH
Confidence 3455666777788888888775443 222 25556999999999999999999999999999
Q ss_pred hhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHH
Q 041698 103 VTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGI 182 (355)
Q Consensus 103 l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~ 182 (355)
++||+.||+++.+|..++.++.+++++++.+|++.++|.+.|+|++...+..+++++|.+|..+|++++++++.+..+|.
T Consensus 91 LadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGs 170 (493)
T KOG1330|consen 91 LADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGS 170 (493)
T ss_pred HHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041698 183 LIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAA 261 (355)
Q Consensus 183 ~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (355)
.+|.+++..+.+.+. .|||.|++.+++.+++.++. ++.+|++|. ..++.. + .
T Consensus 171 glG~vvgs~va~~~~--~Wr~af~~~avl~vi~~~L~~~f~~eP~rg-----a~~~~~-------~-------------~ 223 (493)
T KOG1330|consen 171 GLGYVVGSVVASLTF--WWRWAFRGSAVLGVIVGLLVFLFVREPERG-----ARDEVD-------G-------------E 223 (493)
T ss_pred ceeEEeeeeeccCcc--ceEEEEEeehHHHHHHHHHHHhhccCcccc-----cccccc-------c-------------C
Confidence 999999999988654 39999999999988776655 556666531 111100 0 0
Q ss_pred HHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH----HhcCCCCcHHHHHHHHHHHHHHHHhhh
Q 041698 262 SEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF----NTIGFGSDASLMSAVITGIVNVVATMV 337 (355)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~ 337 (355)
.+..+.....++++....+.+ ......+...........+.+|.|.+. +-.|++..+..++..+...++.+|.++
T Consensus 224 ~~~~~~~ts~~kDl~~l~~~~-v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~ 302 (493)
T KOG1330|consen 224 NKMVKPFTSVWKDLKVLAKIK-VFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLF 302 (493)
T ss_pred CcCCCCccchHHHHHHHHccC-ceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhhee
Confidence 000111122233333211101 111111112222222345555555443 335677778788889999999999999
Q ss_pred hhheecccCC
Q 041698 338 SIYGVDKWGR 347 (355)
Q Consensus 338 ~g~l~d~~g~ 347 (355)
+|.++||+.|
T Consensus 303 Ggiisd~~~~ 312 (493)
T KOG1330|consen 303 GGIISDKLSR 312 (493)
T ss_pred hHHHHHHHHH
Confidence 9999999543
No 45
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.94 E-value=3.7e-26 Score=203.98 Aligned_cols=244 Identities=17% Similarity=0.184 Sum_probs=186.8
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccc
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
++|+|..+.+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+.+.++++++.+++.|++.|++.+...+.
T Consensus 20 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 99 (377)
T PRK11102 20 DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVV 99 (377)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 33999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccCChhHHHhc
Q 041698 154 VPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPDTPNSIIER 232 (355)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~ 232 (355)
..+++.|++|+++|++++++...+..+|..++|.+++.+.+ ..+||+.|++.+++.++..+. .+++||+++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 173 (377)
T PRK11102 100 INALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV---WFSWHAIFWVLALAAILAAALVFFFIPETLPKE--- 173 (377)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcChHHHHHHHHHHHHHHHHHHHHhCCccCccc---
Confidence 99999999999999999999999999999999999999887 568999999887776665443 45567754210
Q ss_pred CChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHH-HHH
Q 041698 233 GRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPV-LFN 311 (355)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 311 (355)
++ ++ .+..+ ..+++++.++++. .+..... .+...........+.|. +.+
T Consensus 174 ~~-~~-----------~~~~~--------------~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 223 (377)
T PRK11102 174 RR-QP-----------FHLRT--------------TIRNFASLFRHKR---VLGYMLA-SGFSFAGMFSFLTAGPFVYIE 223 (377)
T ss_pred cc-CC-----------CChHH--------------HHHHHHHHHcChH---HHHHHHH-HHHHHHHHHHHHHcCHHHHHH
Confidence 00 00 00000 0011223333322 1222122 22222222333334444 445
Q ss_pred hcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 312 TIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
..|+++.+.+.......++.+++.++.+++.||+++|+.+..
T Consensus 224 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~ 265 (377)
T PRK11102 224 LNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRF 265 (377)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 689999999999999999999999999999999999987653
No 46
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.94 E-value=1.4e-25 Score=199.35 Aligned_cols=256 Identities=13% Similarity=0.083 Sum_probs=176.9
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhhhccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ-AIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~ 150 (355)
++++|+|..+.+++.+++.+++.+++++.|+++||+|||+.+.++.++.+++.+++++++ +++.+++.|+++|++.+ .
T Consensus 29 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~ 107 (366)
T TIGR00886 29 KDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-S 107 (366)
T ss_pred HHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-h
Confidence 344499999999999999999999999999999999999999999999999999999999 99999999999999865 4
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCC-------CccchHHHHh-hhHHHHHHH-HHHhcc
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIH-------GGWGWRLSLG-GAMVPALII-TVGSMI 221 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~-------~~~~w~~~~~-~~~~~~~~~-~~~~~~ 221 (355)
.+....++.|++|+++|+++.++.....++|..+++.+++.+.... .+.+||+.|+ ..+++..+. .+...+
T Consensus 108 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 187 (366)
T TIGR00886 108 FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFV 187 (366)
T ss_pred hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHh
Confidence 5667889999999999999999999777788777777766554310 1247999984 434443333 333445
Q ss_pred ccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccc
Q 041698 222 LPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINV 301 (355)
Q Consensus 222 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (355)
.+|+|+.. .+.++.. ..+..... +++...+..+.++++.. +.. .+..+........
T Consensus 188 ~~~~~~~~---~~~~~~~-------~~~~~~~~----------~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~ 243 (366)
T TIGR00886 188 GADTPPGK---PATGKLS-------FKGARWSV----------GTGALGDQLKVFRDRHT---WIL-ALLYSVTFGSFLG 243 (366)
T ss_pred cccCCccc---ccchhcc-------cccccccc----------cchhHHHHHHHHhccch---hhH-HHHHHHHHHHHHH
Confidence 56665311 0000000 00000000 00000012233333322 222 2222222223334
Q ss_pred hHhcHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 302 IMFYAPVLFN-TIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 302 ~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
...+.|.+.+ .+|+++.+++.......+..++++++.++++||+++|+.+.
T Consensus 244 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~ 295 (366)
T TIGR00886 244 VSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLL 295 (366)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHH
Confidence 5556666664 57999999998899999999999999999999999987543
No 47
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.94 E-value=2.3e-25 Score=199.87 Aligned_cols=239 Identities=17% Similarity=0.221 Sum_probs=181.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.|..+.++..+.+.++..+++++.|+++||+|||+.++.+.++..++.+++.++++++.+++.|+++|++.+...+...
T Consensus 34 ~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 113 (392)
T PRK10473 34 NASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAF 113 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccCChhHHHhcCC
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPDTPNSIIERGR 234 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~ 234 (355)
.++.|++|+++|+++.++.+....+|..++|.+++.+.+ ..+||+.|++.+++.++..+. .+.+||+++.. .+
T Consensus 114 ~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~---~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~ 187 (392)
T PRK10473 114 AILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML---KFPWQSLFYTMAAMGILVLLLSLFILKETRPAR---AP 187 (392)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcc---cC
Confidence 999999999999999999999999999999999988876 468999999887776655444 45567764210 00
Q ss_pred hHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH-Hhc
Q 041698 235 HEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-NTI 313 (355)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 313 (355)
++ ... .+..++.++++..........+.... ......+.|.+. ++.
T Consensus 188 -~~--------------~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 234 (392)
T PRK10473 188 -AA--------------SSK--------------PRENSESLLNRFFLSRLVITTLSVTV----ILTFVNTSPVLLMEQM 234 (392)
T ss_pred -Cc--------------cch--------------HHHHHHHHhCHHHHHHHHHHHHHHHH----HHHHHHhCHHHHHHHc
Confidence 00 000 00011122222111111111111111 112333445444 567
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 314 GFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 314 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
|+++.+.+.......++.+++.++.+++.||++||+.+..
T Consensus 235 g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~ 274 (392)
T PRK10473 235 GFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLT 274 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9998888989999999999999999999999999987654
No 48
>PRK10504 putative transporter; Provisional
Probab=99.93 E-value=3.8e-25 Score=203.18 Aligned_cols=294 Identities=16% Similarity=0.224 Sum_probs=206.1
Q ss_pred HhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhch
Q 041698 30 AAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGR 109 (355)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr 109 (355)
.+++.+...++....++. +|.+.+++ |.+..+.+++.+.+.++..++.+++|+++||+||
T Consensus 15 ~~~~~~~~~~~~~~~~~~--~p~~~~~~------------------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 74 (471)
T PRK10504 15 VAFGFFMQSLDTTIVNTA--LPSMAQSL------------------GESPLHMHMVIVSYVLTVAVMLPASGWLADRVGV 74 (471)
T ss_pred HHHHHHHHHHhHHHHHHH--HHHHHHHh------------------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 344556666766666554 67776665 9999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 041698 110 KLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLN 189 (355)
Q Consensus 110 r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~ 189 (355)
|++++.+.++.+++.+++.++++++.++++|+++|++.+...+....++.|++|+++|+++.++.....++|..++|.++
T Consensus 75 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 154 (471)
T PRK10504 75 RNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALG 154 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHHhcCChHHHHHHHH---------HHhCCCc--cHH-HHH
Q 041698 190 YFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSIIERGRHEEAREELR---------KVRGVND--VEE-EFN 256 (355)
Q Consensus 190 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~---------~~~~~~~--~~~-~~~ 256 (355)
+.+.+ +.+||+.|++......+..+.. ...|+++. .+.+.+....... ...+.+. ... ...
T Consensus 155 g~l~~---~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (471)
T PRK10504 155 GLLVE---YASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIA 228 (471)
T ss_pred HHHHh---hccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHH
Confidence 99987 5689999998776655544443 33454332 1112221110000 0001000 000 000
Q ss_pred H--------H---HHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH-hcCCCCcHHHHHH
Q 041698 257 D--------L---VAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN-TIGFGSDASLMSA 324 (355)
Q Consensus 257 ~--------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ 324 (355)
. . ..+++..+++..+. ++++++.. .. .....++..........+.|++++ ..|.++.++++..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~---~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 303 (471)
T PRK10504 229 GLVAVGVVALLLYLLHARNNNRALFSL-KLFRTRTF---SL-GLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMM 303 (471)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCccCH-HHhcccch---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 0 0 00011111111111 23333322 22 222222222234455667788876 4899999999999
Q ss_pred HHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 325 VITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 325 ~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
.+..++.+++.++.+++.||+++|+++..+
T Consensus 304 ~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~ 333 (471)
T PRK10504 304 IPMVLGSMGMKRIVVQVVNRFGYRRVLVAT 333 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 888898999999999999999999887643
No 49
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.93 E-value=4.8e-25 Score=196.89 Aligned_cols=258 Identities=15% Similarity=0.169 Sum_probs=186.8
Q ss_pred HhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhch
Q 041698 30 AAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGR 109 (355)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr 109 (355)
...+.++.+.+.+..++. +|.+.+++ |.|..+.|++.+.+.+++.+++++.|+++||+||
T Consensus 11 ~~~~~~~~~~~~~~~~~~--lp~~~~~~------------------~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~ 70 (381)
T PRK03633 11 LLCGLLLLTLAIAVLNTL--VPLWLAQE------------------HLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGF 70 (381)
T ss_pred HHHHHHHHHHhhhhHHHH--HHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334556666766666655 67776665 8899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 041698 110 KLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLN 189 (355)
Q Consensus 110 r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~ 189 (355)
|+++..+.++.+++.+++++++|++.++++|+++|++.+...+.....+.+..++++|+++++.+..+.++|..++|.++
T Consensus 71 k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 150 (381)
T PRK03633 71 NRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLV 150 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988888888888899999999999999999999999999999
Q ss_pred HHhhcCCCccchHHHHhhhHHHHHHHH-HHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhcc
Q 041698 190 YFFNKIHGGWGWRLSLGGAMVPALIIT-VGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQV 268 (355)
Q Consensus 190 ~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (355)
+.+.+. ..|... +..+....... +.....+|++. + +++
T Consensus 151 ~~l~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~-------------------------------~~~ 189 (381)
T PRK03633 151 SKVSTE---LMSVLP-WVTGLVLAAILPLLFTRILNQQA------E-------------------------------NHD 189 (381)
T ss_pred hccccc---ccchHH-HHHHHHHHHHHHHHHhcccCCCC------C-------------------------------CCC
Confidence 988652 112222 22222211111 11111222110 0 000
Q ss_pred ccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCc
Q 041698 269 EHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRR 348 (355)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r 348 (355)
+.+..+.++++..+......+. ..........+.|.+.++.|.++...+.......++.+++++..+++.||+++|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~ 265 (381)
T PRK03633 190 STSIWPMLKLRQARLGVNGCII----SGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRL 265 (381)
T ss_pred CCCHHHHHHhcchHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcH
Confidence 1122233333222211111111 111223344567888888899988889989999999999999999999999999
Q ss_pred cccc
Q 041698 349 FLFL 352 (355)
Q Consensus 349 ~~~~ 352 (355)
+.+.
T Consensus 266 ~~l~ 269 (381)
T PRK03633 266 LVLR 269 (381)
T ss_pred HHHH
Confidence 8764
No 50
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.93 E-value=9.1e-25 Score=202.88 Aligned_cols=267 Identities=20% Similarity=0.285 Sum_probs=199.1
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccc
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
.++.+.....+..+++++|.++|++++|+++||+|||++++++.++.+++.++.++++|++.+++.|+++|++.++....
T Consensus 112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~ 191 (521)
T KOG0255|consen 112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTV 191 (521)
T ss_pred eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcC
Q 041698 154 VPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERG 233 (355)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 233 (355)
...++.|+.++++|+.+..+ ......+..+++..++++.. +||+.+++..+++++.++..++.||+|||+..++
T Consensus 192 ~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-----~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g 265 (521)
T KOG0255|consen 192 GFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-----DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKG 265 (521)
T ss_pred hHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcC
Confidence 99999999999999999999 77777777778888887765 7999999999998887777666789999999999
Q ss_pred ChHHHHHHHHHHhCCC----ccHHHHHHHH--HHHHH-hhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcH
Q 041698 234 RHEEAREELRKVRGVN----DVEEEFNDLV--AASEA-SRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYA 306 (355)
Q Consensus 234 ~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (355)
+.+++.+.+++..+.+ +.++..+... +..+. ..+++..+.++++.+..++..+...+.++.. ....+-.
T Consensus 266 ~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~----~~~y~gl 341 (521)
T KOG0255|consen 266 RIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVF----SLVYYGL 341 (521)
T ss_pred chHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHH----hHHHHhh
Confidence 9999999888875433 2222222211 11111 1122345677776653333233333322211 1111112
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 307 PVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 307 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
+.... +++.. ........+.....+....+...|+.|||..+..
T Consensus 342 ~~~~~--~lg~~-~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~ 385 (521)
T KOG0255|consen 342 SLNVS--GLGGN-IYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFL 385 (521)
T ss_pred hhhhh--hcCch-HHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHH
Confidence 22222 23322 3455555666888888888899999999887653
No 51
>PRK10133 L-fucose transporter; Provisional
Probab=99.93 E-value=2.9e-25 Score=200.88 Aligned_cols=272 Identities=10% Similarity=0.095 Sum_probs=186.2
Q ss_pred HHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 041698 28 IVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQF 107 (355)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~ 107 (355)
....+..+..+++....+.. +|.+.+ ++|+|..+.+++.+.+.+++.+++++.|+++||+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~--~p~i~~------------------~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~ 88 (438)
T PRK10133 29 ALLCSLFFLWAVANNLNDIL--LPQFQQ------------------AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL 88 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHH------------------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444456666655444433 455444 4499999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHH
Q 041698 108 GRKLSMFFGGILFLAGALLN---GFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILI 184 (355)
Q Consensus 108 Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~ 184 (355)
|||+++..+.++.+++++++ .++++++.++++|+++|++.+...+....++.|+.++++|.+.++..+....+|..+
T Consensus 89 G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~ 168 (438)
T PRK10133 89 SYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII 168 (438)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875 467899999999999999999999999999999877777777899999999999999
Q ss_pred HHHHHHHhhcCC-C----------------c------cchHHHHhhhHHH-HHHHHHH-hccccCChhHHHhcCChHHHH
Q 041698 185 ANVLNYFFNKIH-G----------------G------WGWRLSLGGAMVP-ALIITVG-SMILPDTPNSIIERGRHEEAR 239 (355)
Q Consensus 185 ~~~i~~~~~~~~-~----------------~------~~w~~~~~~~~~~-~~~~~~~-~~~~~e~~~~~~~~~~~~~~~ 239 (355)
++.++..+.... + . .+||++|+....+ .++..+. ...+||.+.. +.+ ++
T Consensus 169 g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~---~~~-~~-- 242 (438)
T PRK10133 169 AVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHS-DA-- 242 (438)
T ss_pred HHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---ccc-cc--
Confidence 999887654100 0 0 2566667543333 2222222 2334543210 000 00
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHH-HH-hcCCCC
Q 041698 240 EELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVL-FN-TIGFGS 317 (355)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~~ 317 (355)
+..+..++.+++++.+..+...+..++ ..........|.+.+ .+ .+|+++
T Consensus 243 ------------------------~~~~~~~~~~~ll~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~~~g~s~ 294 (438)
T PRK10133 243 ------------------------KQGSFSASLSRLARIRHWRWAVLAQFC----YVGAQTACWSYLIRYAVEEIPGMTA 294 (438)
T ss_pred ------------------------cccchhhhHHHHHhCchHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhcCCCCH
Confidence 000001122334443332222222212 112222233344544 44 479999
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 318 DASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.+++.......++.++++++++++.||+++|+++..
T Consensus 295 ~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~ 330 (438)
T PRK10133 295 GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAA 330 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 999999999999999999999999999999987643
No 52
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.6e-26 Score=195.37 Aligned_cols=321 Identities=21% Similarity=0.271 Sum_probs=224.5
Q ss_pred CCCCChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHH
Q 041698 16 PGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALL 95 (355)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~ 95 (355)
.....|+....+.++.++.+.|+||..+++.+ .|.+..-+- ... ...=|++....+.+..+.++|.++
T Consensus 32 ~~g~qw~~fk~i~iAG~GfftDsYDlF~I~lV--t~il~~lY~----~~~------~~~g~~ps~i~~~Vn~~A~vGti~ 99 (538)
T KOG0252|consen 32 SEGLQWKHFKAIIIAGMGFFTDSYDLFSISLV--TKILGYLYY----HGD------ESGGHYPSGVLALVNAAALVGTIF 99 (538)
T ss_pred ccchhHHHHHHHHHhhhhhcccchhhhhHHHH--HHHHHHHhc----CCC------CCCCcCCchHHHHHHHHHHHHHHH
Confidence 33457888899999999999999999999877 444443331 111 111257888899999999999999
Q ss_pred HHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHhhhcccccccchhhhhhhcCCCCccc
Q 041698 96 SSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ-------AIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRG 168 (355)
Q Consensus 96 ~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~ 168 (355)
|+++.|+++|++|||+++...+++.+++++++++.. -.+++...|++.|+|.|+-+|...+..+|...++.||
T Consensus 100 GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RG 179 (538)
T KOG0252|consen 100 GQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRG 179 (538)
T ss_pred HHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcccc
Confidence 999999999999999999999999999999877642 2578999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhh----cCCC--------ccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCCh-
Q 041698 169 ALNIGFQLSITVGILIANVLNYFFN----KIHG--------GWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRH- 235 (355)
Q Consensus 169 ~~~~~~~~~~~~G~~~~~~i~~~~~----~~~~--------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~- 235 (355)
...+...+..+.|.+.|.+++..+. ...+ ..-||..+-+.++++++.+...+.+||++++.....+.
T Consensus 180 a~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~ 259 (538)
T KOG0252|consen 180 AFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKL 259 (538)
T ss_pred ceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCH
Confidence 9888877777777666666555443 2111 13599999999999998888888999999987433322
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccc---hhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHh
Q 041698 236 EEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHP---WKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNT 312 (355)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (355)
+.+. ++..+....+.+.+ ...+...+..+.+ +...+..+ .-+.++..+..++..-...+....+...+++.
T Consensus 260 ~~a~---~d~~k~~~~~~~~~--~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ 333 (538)
T KOG0252|consen 260 KQAA---GDMKKVLSVDIEAE--STAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA 333 (538)
T ss_pred hhhh---hccccccccccchh--hccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhhhhccccHHHHHHHh
Confidence 2222 22211111110000 0001111111112 22222222 22456777777888777788888888888888
Q ss_pred cCCCCcHHHH---------HHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 313 IGFGSDASLM---------SAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 313 ~g~~~~~~~~---------~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
.|+.+.+... ...+.....++|..+...++|++||++..+.|
T Consensus 334 ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~G 384 (538)
T KOG0252|consen 334 IGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMG 384 (538)
T ss_pred hccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhh
Confidence 7776544322 22233334455777888899999999987654
No 53
>PRK12382 putative transporter; Provisional
Probab=99.93 E-value=2.1e-24 Score=193.57 Aligned_cols=232 Identities=16% Similarity=0.182 Sum_probs=164.8
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHhhh
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF--------AQAIWMLIVGRLLLGF 145 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--------~~~~~~l~~~r~l~G~ 145 (355)
|+|+|..+.+++.+++.+++.+++++.|+++||+|||++++.+.+...++.+.... .++++.++++|+++|+
T Consensus 45 ~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 124 (392)
T PRK12382 45 DLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGF 124 (392)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHH
Confidence 34999999999999999999999999999999999999999998887776543321 3688999999999999
Q ss_pred cccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCC
Q 041698 146 GIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDT 225 (355)
Q Consensus 146 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~ 225 (355)
+.+...+...+++.|+.|+++|++++++...+...|..++|++++.+.+ ..+|++.+.+..+..++........||.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (392)
T PRK12382 125 GESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHS---HFGFAALALTTMVLPLLAWAFNGTVRKV 201 (392)
T ss_pred HHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHh---ccChHHHHHHHHHHHHHHHHHHHhccCC
Confidence 9998888888999999999999999999999999999999999998877 5689987776554433332222223332
Q ss_pred hhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhc
Q 041698 226 PNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFY 305 (355)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (355)
+.. + ++ +.+.++..+....+. ... ++. .........+
T Consensus 202 ~~~-----~-~~-------------------------------~~~~~~~~~~~~~~~-~~~-~l~----~~~~~~~~~~ 238 (392)
T PRK12382 202 PAH-----A-GE-------------------------------RPSLWSVVGLIWKPG-LGL-ALQ----GVGFAVIGTF 238 (392)
T ss_pred CCC-----c-cc-------------------------------CchHHHHHHHHHHhH-HHH-HHH----HHHHhHHHHH
Confidence 210 0 00 000111111111111 111 111 1112234455
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 306 APVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 306 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.+.++++.+++. .+.......++.+++.++.+++.||+++|+.+..
T Consensus 239 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~ 284 (392)
T PRK12382 239 VSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIV 284 (392)
T ss_pred HHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHH
Confidence 666666666653 4556666778889999999999999999887654
No 54
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.93 E-value=4.1e-25 Score=201.49 Aligned_cols=250 Identities=16% Similarity=0.111 Sum_probs=175.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ----AIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~ 151 (355)
|+|..+.+++.+++.+++.+++++.|+++||+|||++++++.++.+++.+++++++ +++.+++.|++.|++.+...
T Consensus 59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~ 138 (452)
T PRK11273 59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGW 138 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccc
Confidence 88999999999999999999999999999999999999999999999998888763 78889999999999999888
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHH-HHHHHHHHhhcCCCccchHHHHhhhHHHHHHHH-HHhccccCChhHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGIL-IANVLNYFFNKIHGGWGWRLSLGGAMVPALIIT-VGSMILPDTPNSI 229 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~e~~~~~ 229 (355)
+.....+.|++|+++|+++++++..+.++|.. .+|+++..+.. ..+||+.|++.+++.++.. +..+++||+|+..
T Consensus 139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~---~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~ 215 (452)
T PRK11273 139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW---FNDWHAALYMPAFAAILVALFAFAMMRDTPQSC 215 (452)
T ss_pred hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHccCCHhhc
Confidence 88888999999999999999999999999864 45554433332 2389999998877766543 4456678887532
Q ss_pred HhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhc--cCchhHHHHHHHHHHHHHcccccchHhcHH
Q 041698 230 IERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQ--KKYRPHLTMAVLIPFFQQFTGINVIMFYAP 307 (355)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (355)
..+ +.++..+ +..+ ..+.++.++.+.++.++ ..+.+. ++...+..+......+....+.|
T Consensus 216 ~~~-~~~~~~~---~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~P 277 (452)
T PRK11273 216 GLP-PIEEYKN---DYPD-------------DYNEKHEQELTAKQIFMQYVLPNKL-LWYIAIANVFVYLLRYGILDWSP 277 (452)
T ss_pred CCC-Chhhhhh---cccc-------------ccccccCCCccHHHHHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1111000 0000 00000001111222111 011122 22222222222233345566778
Q ss_pred HHHHh-cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccC
Q 041698 308 VLFNT-IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWG 346 (355)
Q Consensus 308 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 346 (355)
.++++ .|++..+++....+..++.+++.++.|+++||++
T Consensus 278 ~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~ 317 (452)
T PRK11273 278 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF 317 (452)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77765 7899888888888889999999999999999983
No 55
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.93 E-value=7.9e-25 Score=196.85 Aligned_cols=232 Identities=20% Similarity=0.218 Sum_probs=168.0
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHhhh
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA--------QAIWMLIVGRLLLGF 145 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------~~~~~l~~~r~l~G~ 145 (355)
++|.|..+.+++.+++.+++.+++++.|+++||+|||++++.+.++.+++.+.+.++ .+++.+++.|+++|+
T Consensus 45 ~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 124 (399)
T PRK05122 45 QLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGI 124 (399)
T ss_pred hcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHh
Confidence 348999999999999999999999999999999999999999999988877665543 257789999999999
Q ss_pred cccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCC
Q 041698 146 GIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDT 225 (355)
Q Consensus 146 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~ 225 (355)
+.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+ ..+|++.+++.++..++..+.....|++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (399)
T PRK05122 125 GESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH---WGGLAGLGLLIMLLALLGLLLARPRPAV 201 (399)
T ss_pred hHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999887 5789998887666554433333223332
Q ss_pred hhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhc
Q 041698 226 PNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFY 305 (355)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (355)
++. + ++ +.++++.++... .......+.. ........+
T Consensus 202 ~~~-----~-~~-------------------------------~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~ 238 (399)
T PRK05122 202 PPV-----K-GE-------------------------------RLPFRRVLGRVW--PYGMGLALAS----IGFGTIATF 238 (399)
T ss_pred CCC-----C-cc-------------------------------chhHHHHHHHHH--HHHHHHHHHH----HHHHHHHHH
Confidence 210 0 00 000111111110 0011111111 112233445
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 306 APVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 306 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.+.+..+.|++ +.+.......++.+++.++.+++.||+++|+.+..
T Consensus 239 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~ 284 (399)
T PRK05122 239 ITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIV 284 (399)
T ss_pred HHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 56566666663 34566677888899999999999999999887643
No 56
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.93 E-value=4.4e-25 Score=183.44 Aligned_cols=276 Identities=20% Similarity=0.246 Sum_probs=212.9
Q ss_pred ccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccc
Q 041698 71 TNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 71 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 150 (355)
.++.++.+..+..++....+.|..+++..+|.++|++|||+.+.+..+..++...+.+.++|+..+++.|.+.|+|.|+
T Consensus 104 l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg- 182 (528)
T KOG0253|consen 104 LDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG- 182 (528)
T ss_pred HHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-
Confidence 4666688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHH
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSII 230 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 230 (355)
.|...++-.|..|..+|...+-.. ..+.+|.++...++..... +.||||.......+..+.....+++||+||+..
T Consensus 183 ~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~---~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~ 258 (528)
T KOG0253|consen 183 LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMS---NFGWRYLLFTSSTPLMFAARFLVWVYESPRFYL 258 (528)
T ss_pred ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHhHHHHHHHHHhhcccCcchhh
Confidence 888899999999999999888777 8999999999999988877 578999988888777777778889999999999
Q ss_pred hcCChHHHHHHHHHHhCCCcc---------------HHHHHHHHHHH-HHhhccccchhhhhccCchhHHHHHHHHHHHH
Q 041698 231 ERGRHEEAREELRKVRGVNDV---------------EEEFNDLVAAS-EASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQ 294 (355)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (355)
.+++++++...++++...|.. |++..+..+.+ +..++.+....+++....+++.+.....++..
T Consensus 259 ~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgn 338 (528)
T KOG0253|consen 259 AKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGN 338 (528)
T ss_pred hcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhh
Confidence 999999999988888765521 11111111111 11122234456666666666666666665544
Q ss_pred HcccccchHhcHHHHHHhc--------------------CCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 295 QFTGINVIMFYAPVLFNTI--------------------GFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
.+..+..+. ..+.+.+.. ..+......-..+..+..++|.++.+++.||+|||+.+.
T Consensus 339 afsyyg~VL-lttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMa 415 (528)
T KOG0253|consen 339 AFSYYGSVL-LTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMA 415 (528)
T ss_pred HHHHHHHHH-HHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHH
Confidence 444333332 222222211 112223345567788999999999999999999999864
No 57
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.93 E-value=1.4e-24 Score=194.68 Aligned_cols=244 Identities=23% Similarity=0.339 Sum_probs=176.6
Q ss_pred CCcchhHHHHHH-----HHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHH--------HHHHHHHHh
Q 041698 77 YDSETLTMFTSS-----LYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIW--------MLIVGRLLL 143 (355)
Q Consensus 77 ~s~~~~~~~~s~-----~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~ 143 (355)
.++.+.+.+.+. .+++..+++++.|+++||+|||+++..+.++..++.++++++++++ .+++.|+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~ 106 (394)
T TIGR00883 27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ 106 (394)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence 344555554443 3344457899999999999999999999999999999999988875 588999999
Q ss_pred hhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCC-----CccchHHHHhhhHHHHHHHHHH
Q 041698 144 GFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIH-----GGWGWRLSLGGAMVPALIITVG 218 (355)
Q Consensus 144 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~~ 218 (355)
|++.+...+....++.|++|+++|++..+....+..+|.++++.++..+.... ..++||+.|++.+++.++....
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL 186 (394)
T ss_pred HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877654210 1468999998877666655544
Q ss_pred hccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHccc
Q 041698 219 SMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTG 298 (355)
Q Consensus 219 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (355)
....||++++...++ ++++.+.+.++.++++. ++.+... ...+.....
T Consensus 187 ~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~ 234 (394)
T TIGR00883 187 RRNLEETPVFEKAQE------------------------------KHKKKRGPIRETLTKHR-KPFLLGL-GLVIATTTT 234 (394)
T ss_pred HHhcCCChhHHHHHh------------------------------ccccccCCHHHHHHhch-HHHHHHH-HHHHHHHHH
Confidence 455677654211100 00111223333443322 1122222 222333333
Q ss_pred ccchHhcHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 299 INVIMFYAPVLF-NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 299 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
......+.|.+. ++.|.++.+.+.......+..+++.++.++++||++||+.+.
T Consensus 235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 289 (394)
T TIGR00883 235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLI 289 (394)
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 444556667666 568899999999999999999999999999999999998654
No 58
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.93 E-value=1.9e-25 Score=209.41 Aligned_cols=266 Identities=14% Similarity=0.159 Sum_probs=187.0
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh--------------------
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ-------------------- 131 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------------------- 131 (355)
+++++++..+.|++.+.+.++++++.++.++++||+|||+++.++.++.+++++++++.+
T Consensus 60 ek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~ 139 (633)
T TIGR00805 60 ERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSS 139 (633)
T ss_pred hhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccc
Confidence 445599999999999999999999999999999999999999999999999999988764
Q ss_pred -------------------------------HHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHH
Q 041698 132 -------------------------------AIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITV 180 (355)
Q Consensus 132 -------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 180 (355)
.+..++++|+++|+|.+..++...+++.|++|+++|++.++++..+..+
T Consensus 140 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~i 219 (633)
T TIGR00805 140 ANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVF 219 (633)
T ss_pred cccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHh
Confidence 2567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCcc-------------------chHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHH
Q 041698 181 GILIANVLNYFFNKIHGGW-------------------GWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREE 241 (355)
Q Consensus 181 G~~~~~~i~~~~~~~~~~~-------------------~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 241 (355)
|.++|+++++++.+...++ .|+..|++.+++.++..+.++++|++.+....+.+.++.++
T Consensus 220 G~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~- 298 (633)
T TIGR00805 220 GPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVNVDVHET- 298 (633)
T ss_pred hhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccchhhhhh-
Confidence 9999999999987532111 27777888887777665555666654311000000000000
Q ss_pred HHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH-hcCCCCcHH
Q 041698 242 LRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN-TIGFGSDAS 320 (355)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~ 320 (355)
+.... .+.+.. . ...+..+......+.+++.+ .++...+..+........+..+.|.+++ ++|+++.++
T Consensus 299 -~~~~~-~~~~~~-~---~~~~~~~~~~~~~~~Ll~n~----~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~a 368 (633)
T TIGR00805 299 -EKLEK-SEDKSR-K---KNSDITKDFPKIIKRLLCNP----IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEA 368 (633)
T ss_pred -hcccc-cccccc-h---hhhhhHHHHHHHHHHHHcCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 00000 000000 0 00000000011233344332 2333434444444455666777887775 589999999
Q ss_pred HHHHHHHHH-HHHHHhhhhhheecccCCc
Q 041698 321 LMSAVITGI-VNVVATMVSIYGVDKWGRR 348 (355)
Q Consensus 321 ~~~~~~~~~-~~~~~~~~~g~l~d~~g~r 348 (355)
+.+.....+ +.+++.+++|+++||++.+
T Consensus 369 g~l~~~~~i~~~~vG~~l~G~l~~r~~~~ 397 (633)
T TIGR00805 369 NFLIGVVNLPAAGLGYLIGGFIMKKFKLN 397 (633)
T ss_pred HHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence 998887776 5789999999999999854
No 59
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.93 E-value=2.6e-24 Score=193.40 Aligned_cols=241 Identities=14% Similarity=0.101 Sum_probs=172.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH---H-hhHHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNG---F-AQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++. + .++++.+++.|++.|++.+...
T Consensus 44 g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~ 123 (402)
T TIGR00897 44 GLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFA 123 (402)
T ss_pred CCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHH
Confidence 89999999999999999999999999999999999999999999998876553 3 2578899999999999988888
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHH-HHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHH-HhccccCChhHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGI-LIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITV-GSMILPDTPNSI 229 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~ 229 (355)
+.....+.+++|+++|++++++...+.++|. .++|.+++.+.+ ..+|+..++.......+..+ ..++.++.++..
T Consensus 124 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (402)
T TIGR00897 124 YSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIP---AFGEMNTLWSALAFVLTGGVIALFSNKDIFTPQ 200 (402)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---ccchHHHHHHHHHHHHHHHHHHHhccCCCCCcc
Confidence 8888888999999999999999999999996 688999888776 45655444433322222222 223344432100
Q ss_pred HhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHH
Q 041698 230 IERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVL 309 (355)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
.+++.++ .++ .++.++.+++++. .+..... .++..........+.|.+
T Consensus 201 -~~~~~~~-----------------~~~----------~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~p~~ 248 (402)
T TIGR00897 201 -HMQTREK-----------------FSE----------LGKAATILFTNPN---VLLGGMV-RIINTIGLFGFAVFLPMF 248 (402)
T ss_pred -cccCCcc-----------------hhh----------HHHHHHHHHcChh---HHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 0000000 000 0011223333322 2222222 223333345566788888
Q ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccc
Q 041698 310 FNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLF 351 (355)
Q Consensus 310 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~ 351 (355)
.+++|+++.+.+.......++.+++.++.|+++||++||+.+
T Consensus 249 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~ 290 (402)
T TIGR00897 249 VAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTV 290 (402)
T ss_pred HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 888999999988888889999999999999999999988754
No 60
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.93 E-value=1.6e-24 Score=193.95 Aligned_cols=241 Identities=15% Similarity=0.073 Sum_probs=176.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+..+.+++.+++.+++.+.++++|+++||+|||++++++.++.+++++++.++.+. ++.|+++|++.+...|+..
T Consensus 34 ~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~ 110 (393)
T PRK11195 34 HYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKY 110 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999999999999999999999999999999999998888777664 7889999999999999999
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCCh
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRH 235 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 235 (355)
+++.|++|+++|+++.++......+|.++||.+++.+.+ +.|+..+.+.+...++..+..+.+||+|++...++..
T Consensus 111 a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~----~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 186 (393)
T PRK11195 111 GILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD----PHAEAALAVCALIYLLAALFNLFIPRLGARRPGQSWN 186 (393)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCCC
Confidence 999999999999999999999999999999999999987 3477777666555444444456678765321111000
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH-HhcC
Q 041698 236 EEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-NTIG 314 (355)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g 314 (355)
.+ +. .++. +..++.+++++..+.......+.+.. .....+..+.+. +.+|
T Consensus 187 ~~--~~-------------~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~lg 237 (393)
T PRK11195 187 PI--AL-------------LRDF----------FHACRVLWRDKLGRFSLAGTTLFWGA----GATLRFLVLAWAPVALG 237 (393)
T ss_pred HH--HH-------------HHHH----------HHHHHHHHhCchhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcC
Confidence 00 00 0000 00122333333322222222221111 112223333333 4579
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 315 FGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
.++.+.+.......++.+++.++.+++.||.++|+.+.
T Consensus 238 ~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~ 275 (393)
T PRK11195 238 ITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLP 275 (393)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHH
Confidence 99999999999999999999999999999988877554
No 61
>PRK11043 putative transporter; Provisional
Probab=99.93 E-value=2e-24 Score=194.28 Aligned_cols=238 Identities=16% Similarity=0.206 Sum_probs=183.7
Q ss_pred ccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccccc
Q 041698 73 QYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQ 152 (355)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 152 (355)
+++|.+.++.+++.+++.++..++++++|+++||+|||+++..+.++..++.+++.++++++.+++.|+++|++.+...+
T Consensus 34 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~ 113 (401)
T PRK11043 34 ADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAV 113 (401)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHH
Confidence 34499999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred chhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhc
Q 041698 153 SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIER 232 (355)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 232 (355)
....++.|++|++++++..+.......+|..++|.+++.+.+ ..+||+.|++.+++.++..+..++++|+++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 186 (401)
T PRK11043 114 IWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN---HFGWQAIFATLFAITLLLILPTLRLKPSKKA---- 186 (401)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCChHHHHHHHHHHHHHHHHHHHHcCCCCCc----
Confidence 888899999999989999999888899999999999999887 5689999998887776665555555554321
Q ss_pred CChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHh
Q 041698 233 GRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNT 312 (355)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (355)
++.++ ++.++++.++++..+........ ..........+.|.+.++
T Consensus 187 ~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~ 232 (401)
T PRK11043 187 RKQSQ------------------------------DALTFKQLLKSKTYLGNVLIFAA----CSAAFFAWLTGSPFILEQ 232 (401)
T ss_pred cccch------------------------------HHHHHHHHHcChhHHHHHHHHHH----HHHHHHHHHHHhHHHHHH
Confidence 00000 01123333333222211111111 111223344567777788
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccc
Q 041698 313 IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLF 351 (355)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~ 351 (355)
.|+++.+.+.......++.+++.++.+++.||+++|+..
T Consensus 233 ~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~ 271 (401)
T PRK11043 233 MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL 271 (401)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 899999889888888889999999999999999988743
No 62
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.93 E-value=1.9e-24 Score=192.75 Aligned_cols=240 Identities=16% Similarity=0.205 Sum_probs=173.5
Q ss_pred ccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 73 QYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFF-GGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
+++|.|..+.+++.+++.++..+.+++.|+++||+||||.++. +.++..++.++++++++++.+++.|++.|.+.+...
T Consensus 26 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 105 (375)
T TIGR00899 26 EEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTAN 105 (375)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhH
Confidence 3449999999999999999999999999999999999887654 566666777888899999999999999998888888
Q ss_pred cchhhhhhhcCCCCcccch--hhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhH
Q 041698 152 QSVPLYLSEMAPYRFRGAL--NIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNS 228 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~ 228 (355)
|....+..|+.|+++|++. .+....+.++|..++|.+++.+.+ ..+||+.|++.+++.++..+.. +++||+|++
T Consensus 106 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
T TIGR00899 106 PQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL---GFGFTVMFLTAALAFVLCGVLVWLFLPSYPRG 182 (375)
T ss_pred HHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH---hcccHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 8888888998887777654 577888889999999999999887 5689999999888766555443 457887642
Q ss_pred HHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHH
Q 041698 229 IIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPV 308 (355)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (355)
...+. + +.+.++.++++..+......++.+. .......+.|.
T Consensus 183 ~~~~~---~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 224 (375)
T TIGR00899 183 APGAL---T-------------------------------RLEVRGLLASRDTRLLFVACTLMWG----CNILYIINMPL 224 (375)
T ss_pred ccccc---C-------------------------------cchhhhhhcCcchHHHHHHHHHHHH----HHHHHHhhhHH
Confidence 10000 0 0011112222222221222212111 11222334454
Q ss_pred HH-HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 309 LF-NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 309 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
+. ++.|.++.+.+.......+..+++.++.+++.||++||+.+.+
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~ 270 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLL 270 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHH
Confidence 44 5689999988888887777888899999999999999987653
No 63
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.93 E-value=2.7e-24 Score=195.94 Aligned_cols=255 Identities=16% Similarity=0.149 Sum_probs=176.7
Q ss_pred ccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHhhhcccccc
Q 041698 73 QYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIV-GRLLLGFGIGFAN 151 (355)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~ 151 (355)
+++|++.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.++++++++++++++.+++ .|++.|++.+...
T Consensus 47 ~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~ 126 (455)
T TIGR00892 47 QIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNF 126 (455)
T ss_pred HHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhh
Confidence 344999999999999999999999999999999999999999999999999999999999998875 5699999998877
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccc-cCChhHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMIL-PDTPNSII 230 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~ 230 (355)
+....++.++++ ++|+++.++...+..+|..++|.+++.+.+ ..+||+.|++.+++.++..+..+++ ++.+.+.
T Consensus 127 ~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~---~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~- 201 (455)
T TIGR00892 127 QPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFE---SFGWRGSFLILGGLLLHCCVCGALMRPVGPSQR- 201 (455)
T ss_pred hHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHH---HhChHHHHHHHHHHHHHHHHHHHHhCCCCcccc-
Confidence 777788899985 789999999999999999999999998887 5689999999888766554443333 3222110
Q ss_pred hcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH
Q 041698 231 ERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF 310 (355)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (355)
+.+.++. +.....+..++. .. .....+..+...+ +.++++ . ++......+...........+.+.+.
T Consensus 202 -~~~~~~~----~~~~~~~~~~~~--~~-~~~~~~~~~~~~~-~~~~~~---~-~~~~~~~~~l~~~~~~~~~~~l~~~~ 268 (455)
T TIGR00892 202 -VSKSKSK----EGLPPDGSTKKL--SK-KSTAEKINRFLDF-SLFTHR---G-FLVYLSGNVIMFLGFFAPIIFLVPYA 268 (455)
T ss_pred -ccccccc----ccCCCCCccccc--cc-cchhhhhhhhcch-HHhcCc---h-HHHHHHHHHHHHHHccchHHHHHHHH
Confidence 0000000 000000000000 00 0000000000011 233322 2 22222222222233344455666677
Q ss_pred HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheeccc
Q 041698 311 NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKW 345 (355)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 345 (355)
++.|++..+++...++.+++.++++++.+++.||.
T Consensus 269 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~ 303 (455)
T TIGR00892 269 KDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK 303 (455)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77899999999999999999999999999999973
No 64
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.92 E-value=1.6e-24 Score=194.45 Aligned_cols=267 Identities=12% Similarity=0.128 Sum_probs=189.7
Q ss_pred HHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 041698 29 VAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFG 108 (355)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G 108 (355)
.++...+..|++.+..++. +|.+.+++ |+|..+.+++.+.+.+++.+++++.|++.||+|
T Consensus 7 ~~~~~f~~~G~~~~~~~~l--~~~~~~~~------------------~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G 66 (410)
T TIGR00885 7 LITSLFALWGFANDITNPM--VPQFQQAF------------------TLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLS 66 (410)
T ss_pred HHHHHHHHHHHHHHhHHHH--HHHHHHHh------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455567777777666655 55655555 999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHH
Q 041698 109 RKLSMFFGGILFLAGALLNGF---AQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIA 185 (355)
Q Consensus 109 rr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~ 185 (355)
||+++.++.++.+++.+++.. .++++.+++.|++.|++.|..++....++.+..|+++|++.+++.+...++|..++
T Consensus 67 ~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g 146 (410)
T TIGR00885 67 YKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIG 146 (410)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988654 35899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCC-----------------------CccchHHHHhhhHHHHHHHHHHhcc--ccCChhHHHhcCChHHHHH
Q 041698 186 NVLNYFFNKIH-----------------------GGWGWRLSLGGAMVPALIITVGSMI--LPDTPNSIIERGRHEEARE 240 (355)
Q Consensus 186 ~~i~~~~~~~~-----------------------~~~~w~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~ 240 (355)
|.++..+.... +..+||+.|.+.+++.++..+...+ .||.++ ++ ++
T Consensus 147 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~-~~--- 217 (410)
T TIGR00885 147 MVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD-AK--- 217 (410)
T ss_pred HHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc-cc---
Confidence 99988875321 0136999998888776655444332 343211 00 00
Q ss_pred HHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhc--CCCCc
Q 041698 241 ELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTI--GFGSD 318 (355)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~ 318 (355)
+...+++.+++++++.........+++. ........+.+.+.++. +.+..
T Consensus 218 ------------------------~~~~~~~~~~~~~~~~~~~~~l~~f~yv----g~e~~~~s~l~~y~~~~~~~~~~~ 269 (410)
T TIGR00885 218 ------------------------QISFSASLSRLARIRHYREGVIAQFFYV----GVQIMCWTFIIQYAVRLIPGMTAG 269 (410)
T ss_pred ------------------------cccchhhHHHHHhChhHHHHHHHHHHHH----HHHHHHHHHHHHHHhhccCCCCHH
Confidence 0000111223333332222222222222 22223344555555544 33444
Q ss_pred HHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 319 ASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
.+............+|+++.+++.||+++|+.+.
T Consensus 270 ~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~ 303 (410)
T TIGR00885 270 FAANYNIGAMVIFFISRFIGTWLISYLAAHKVLM 303 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 4455666667888999999999999999988764
No 65
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.92 E-value=2.9e-24 Score=195.22 Aligned_cols=254 Identities=19% Similarity=0.157 Sum_probs=179.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA----QAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|+|.++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.++. ++++.+.+.|++.|++.+..+
T Consensus 57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~ 136 (438)
T TIGR00712 57 GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGW 136 (438)
T ss_pred CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcch
Confidence 8899999999999999999999999999999999999999999999998887764 467888899999999999999
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHH-HHhccccCChhHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIIT-VGSMILPDTPNSII 230 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~ 230 (355)
+.....+.|++|+++|++++++.+.+.++|..+++.+.+..... ..+||..|++.+++.++.. +..+++||+|+...
T Consensus 137 ~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~--~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~ 214 (438)
T TIGR00712 137 PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW--FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCG 214 (438)
T ss_pred HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcC
Confidence 98999999999999999999999999999999998877654331 3589999999888766644 34456788775321
Q ss_pred hcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccch-hhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHH
Q 041698 231 ERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPW-KNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVL 309 (355)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
. ++.++.++ +... +..+ +.+.+.+.+... +..++++. ++...+..++.....+....+.|.+
T Consensus 215 ~-~~~~~~~~---~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~ 277 (438)
T TIGR00712 215 L-PPIEEYRN---DYPD--DYNE-------KAEQELTAKEIFMQYVLPNKL----LWYIAIANVFVYLLRYGVLDWSPTY 277 (438)
T ss_pred C-CCchhccc---cccc--cccc-------ccccccchHHHHHHHHccCch----HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 0 01000000 0000 0000 000000000111 11223222 2222222222222334555677777
Q ss_pred HHh-cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCc
Q 041698 310 FNT-IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRR 348 (355)
Q Consensus 310 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r 348 (355)
+++ .|+++.++++...+..+..+++.++.++++||++++
T Consensus 278 l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~ 317 (438)
T TIGR00712 278 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKG 317 (438)
T ss_pred HHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 765 799999999999999999999999999999999643
No 66
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.92 E-value=9.6e-24 Score=190.41 Aligned_cols=239 Identities=13% Similarity=0.129 Sum_probs=165.9
Q ss_pred cCCcch-----hHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSET-----LTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~-----~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 150 (355)
|++..+ .+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++.+.++++.+++.|++.|++.+ .
T Consensus 45 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~ 123 (408)
T PRK09874 45 GVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-F 123 (408)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-h
Confidence 666443 5889999999999999999999999999999999999999999999999999999999999999755 5
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHH
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSI 229 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~ 229 (355)
.+....++.|++|+++|+++.++...+..+|..++|.+++.+.+ ..+||+.|++.+++.++..+.. ++++|+++..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (408)
T PRK09874 124 VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD---SYGLRPVFFITASVLFLCFLVTLFCIRENFQPV 200 (408)
T ss_pred HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 67777888999999999999999999999999999999999877 5689999998887766554443 4456543210
Q ss_pred HhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHH
Q 041698 230 IERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVL 309 (355)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
++.++ .+ . + +..+.++++.. +.......+...........+.+.+
T Consensus 201 ---~~~~~---------------~~------~-------~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (408)
T PRK09874 201 ---SKKEM---------------LH------M-------R-EVVTSLKNPKL---VLSLFVTTLIIQVATGSIAPILTLY 245 (408)
T ss_pred ---cchhh---------------hH------H-------H-HHHHhCcCCch---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00 0 0 00111222211 1111111111111112233344444
Q ss_pred HHhcCCCCc----HHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 310 FNTIGFGSD----ASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 310 ~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
..+.+.+.. ..+......+++.+++.+..+++.||++||+.+..
T Consensus 246 ~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~ 293 (408)
T PRK09874 246 VRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILIT 293 (408)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHH
Confidence 444332222 23455566678888899999999999999987654
No 67
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.92 E-value=1.1e-23 Score=186.51 Aligned_cols=237 Identities=16% Similarity=0.179 Sum_probs=175.1
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccc
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
|+|+|.++.+++.+.+.+++.+++++.|+++||+|||+++.++.++..++.+.+ ..++.+.+++.|++.|++.+...+.
T Consensus 29 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~ 107 (355)
T TIGR00896 29 ALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVL 107 (355)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhcc
Confidence 339999999999999999999999999999999999999999999888888777 7789999999999999999988888
Q ss_pred hhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcC
Q 041698 154 VPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERG 233 (355)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 233 (355)
...++.|++| ++|+++.++...+.++|..+++.+.+.+.+..+ .+||+.|...++..++.. ..++|+.++.
T Consensus 108 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~-~~w~~~f~~~~~~~~~~~--~~~~~~~~~~----- 178 (355)
T TIGR00896 108 LPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG-GHWQQALAWWALPALLAL--LAWIPQVRRR----- 178 (355)
T ss_pred chHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHH--HHHhhhhccc-----
Confidence 8888999886 689999999999999999999999888875321 249998876665443322 2233443210
Q ss_pred ChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhc
Q 041698 234 RHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTI 313 (355)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (355)
.++ +++..+...++.++++. .+ ...+..+...........+.|.+.++.
T Consensus 179 -~~~--------------------------~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~lp~~~~~~ 227 (355)
T TIGR00896 179 -VAA--------------------------NQTTTRLTPVRIWRSPL---AW-QVTVFFGLQSGLYYSLIGWLPAILISH 227 (355)
T ss_pred -cCC--------------------------CCCCCCCCCchhhcCHh---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 000 00000112223333322 22 222222222233345566788888888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhhhhhheecccC-Ccccc
Q 041698 314 GFGSDASLMSAVITGIVNVVATMVSIYGVDKWG-RRFLF 351 (355)
Q Consensus 314 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-~r~~~ 351 (355)
|++..+.+...+...++.++++++.|++.||++ ||+.+
T Consensus 228 g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~ 266 (355)
T TIGR00896 228 GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIV 266 (355)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHH
Confidence 999999999999999999999999999999995 44443
No 68
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.92 E-value=1.2e-23 Score=185.55 Aligned_cols=238 Identities=24% Similarity=0.444 Sum_probs=196.0
Q ss_pred hhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHH
Q 041698 33 GGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLS 112 (355)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~ 112 (355)
..+...++....++. .|.+.+++ |.+..+.+++.+.+.++..+++++.|+++||+|||+.
T Consensus 7 ~~~~~~~~~~~~~~~--~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~ 66 (352)
T cd06174 7 GFFLSGLDRGLLSPA--LPLLAEDL------------------GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRV 66 (352)
T ss_pred HHHHHHHhhhhhHhh--HHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchh
Confidence 344455555554444 55665554 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHh
Q 041698 113 MFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFF 192 (355)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~ 192 (355)
+.++.++..++.+...+.++++.+++.|++.|++.+...+....++.|++|+++|++.+++......+|..++|.+++.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 146 (352)
T cd06174 67 LLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLL 146 (352)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccch
Q 041698 193 NKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPW 272 (355)
Q Consensus 193 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (355)
.+ ..+||+.+++.+++.++..+...+++
T Consensus 147 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 174 (352)
T cd06174 147 AE---SLGWRWLFLILAILGLLLALLLLFLL------------------------------------------------- 174 (352)
T ss_pred HH---HhhHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
Confidence 87 45799999988877666555443332
Q ss_pred hhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhc-CCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcc-c
Q 041698 273 KNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTI-GFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRF-L 350 (355)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~-~ 350 (355)
++ ++......+...........+.+.+.++. |.++.+.+.......++.+++.++.+++.||++||+ .
T Consensus 175 ---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 244 (352)
T cd06174 175 ---------RL-LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLL 244 (352)
T ss_pred ---------HH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 11 22222333333344556666777777664 899999999999999999999999999999999998 5
Q ss_pred cc
Q 041698 351 FL 352 (355)
Q Consensus 351 ~~ 352 (355)
+.
T Consensus 245 ~~ 246 (352)
T cd06174 245 LL 246 (352)
T ss_pred HH
Confidence 54
No 69
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.92 E-value=1.1e-23 Score=189.04 Aligned_cols=232 Identities=17% Similarity=0.235 Sum_probs=175.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|+|..+.+++.+++.+++.+++++.|+++||+|||+++..+.++..++.+++.++++++.+++.|++.|++.+...+...
T Consensus 39 ~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 118 (394)
T PRK11652 39 NVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMAR 118 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHH-HhccccCChhHHHhcCC
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITV-GSMILPDTPNSIIERGR 234 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~ 234 (355)
.+..|.+++++|+++.+....+..+|..++|.+++.+.+ ..+||+.|++.++..++..+ ..+++||+++.. .+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~---~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 192 (394)
T PRK11652 119 TLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT---LFGWRACYLFLLLLGAGVTFSMARWMPETRPAD---AR 192 (394)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccChHHHHHHHHHHHHHHHHHHHHhCCccCccc---cc
Confidence 888999998999999999999999999999999999877 56899999987776554433 345567764210 00
Q ss_pred hHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHh-c
Q 041698 235 HEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNT-I 313 (355)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 313 (355)
.++ .+..+++.++++..+......+. ..........+.+.+.++ +
T Consensus 193 ~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 238 (394)
T PRK11652 193 RTR------------------------------VLASYRTLLSNRRFNCYLLMLIG----TLAGIAVFEACSGVLMGAVL 238 (394)
T ss_pred hhH------------------------------HHHHHHHHHcChHHHHHHHHHHH----HHHHHHHHHHhChHHHHHHc
Confidence 000 01112233333222221211111 111122333334445544 8
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhhhhhheecccCC
Q 041698 314 GFGSDASLMSAVITGIVNVVATMVSIYGVDKWGR 347 (355)
Q Consensus 314 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 347 (355)
|+++.+.+.......++.+++..+.+++.||.++
T Consensus 239 g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 272 (394)
T PRK11652 239 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST 272 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888888888899999999999998873
No 70
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.4e-23 Score=177.49 Aligned_cols=239 Identities=20% Similarity=0.232 Sum_probs=187.7
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHhhhccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQA---IWMLIVGRLLLGFGIG 148 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~g 148 (355)
++|+|+|+.|.+++.++..+...+..++.|.+.||+|.|++..++.++..+-++..+++.+ ++++++++.+.|++ |
T Consensus 41 ~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-G 119 (417)
T COG2223 41 KSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-G 119 (417)
T ss_pred ccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-c
Confidence 5666999999999999999999999999999999999999999999999999999998854 45999999999998 5
Q ss_pred ccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccc---hHHHHhhhHHHHHHHHHHh-ccccC
Q 041698 149 FANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWG---WRLSLGGAMVPALIITVGS-MILPD 224 (355)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~---w~~~~~~~~~~~~~~~~~~-~~~~e 224 (355)
..+.....++++|+|++++|.+++++. ..|+|..+...++..+.. ..+ |+....+.....++..+.. +.+.|
T Consensus 120 asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~---~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 120 ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAV---AFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 678888999999999999999999999 889999988888888776 345 8888887777766655444 45566
Q ss_pred ChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccc-cchhhhhccCchhHHHHHHHHHHHHHcccccchH
Q 041698 225 TPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVE-HPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIM 303 (355)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (355)
.|......+ +.+ .+.+.+++.++ .+.+.+..+..+..+..+.
T Consensus 196 ~p~~r~~~~---------------------------------~~~~~~~~~v~~~~~----~W~lsllY~~tFG~Fvgfs 238 (417)
T COG2223 196 VPEHRASVK---------------------------------PQLPAQLKAVFSNKD----TWLLSLLYFATFGGFVGFS 238 (417)
T ss_pred Chhhhcccc---------------------------------ccchhHHHHHhcCcc----hHHHHHHHHHHHHHHHHHH
Confidence 553210000 001 22333333332 2333333444455566777
Q ss_pred hcHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 304 FYAPVLF-NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 304 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
.+.|.++ +++|.++..++.......+.+.+.+.++|+++||+|.++.+.
T Consensus 239 ~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~ 288 (417)
T COG2223 239 AYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTL 288 (417)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHH
Confidence 7777666 569999999999999999999999999999999999887654
No 71
>PRK10054 putative transporter; Provisional
Probab=99.90 E-value=4.5e-23 Score=184.68 Aligned_cols=239 Identities=10% Similarity=0.029 Sum_probs=171.7
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccc
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
++|+|..+++++.+.+.+++.+++++.|+++||+|||++++++.++.+++.++.+++++++.++++|++.|.+.+...+.
T Consensus 37 ~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 116 (395)
T PRK10054 37 QYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTV 116 (395)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999887878888
Q ss_pred hhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChhHHHhc
Q 041698 154 VPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPNSIIER 232 (355)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~ 232 (355)
...+..|..|+++|++..++.....++|..++|.+++.+.+ .+|+..|++.++..++..+.. +++||+++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~----~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~---- 188 (395)
T PRK10054 117 LKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM----QSINLPFWLAAICSAFPLVFIQIWVQRSEKA---- 188 (395)
T ss_pred HHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCcHHHHHHHHHHHHHHHHHHHHhccccc----
Confidence 89999999999999999999999999999999999998874 479999998777766554433 445554311
Q ss_pred CChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH--
Q 041698 233 GRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-- 310 (355)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 310 (355)
++.++ ++ ..+.++.++++..+......++..+. ......+.+.+.
T Consensus 189 ~~~~~-------------------------~~----~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~ 235 (395)
T PRK10054 189 IATET-------------------------GS----VWSPSVLLQDKALLWFTCSGFLASFV----SGAFASCISQYVMV 235 (395)
T ss_pred cccch-------------------------hh----hhhhhhhccCceehHHHHHHHHHHHH----HHHhhhhHHHHHHH
Confidence 00000 00 00012233333222222221111111 111222223332
Q ss_pred -HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 311 -NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 311 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
++.+.+....+.......+.........+++.||.++|+.+..
T Consensus 236 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~ 279 (395)
T PRK10054 236 VADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTA 279 (395)
T ss_pred hcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHH
Confidence 2345555566777777777777778888999999998887643
No 72
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.90 E-value=9.9e-23 Score=186.99 Aligned_cols=241 Identities=13% Similarity=0.208 Sum_probs=171.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh-----chhHH-HHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHhhhc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQF-----GRKLS-MFFGGILFLAGALLNGFA---QAIWMLIVGRLLLGFG 146 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~ 146 (355)
|.|..+++.+ +.....+ ++.+++|+++||+ |||+. ++.+.+..+++..+.++. ++++.+.+.+++.|++
T Consensus 43 g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~ 120 (491)
T PRK11010 43 NIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFC 120 (491)
T ss_pred CCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 8888899987 4444444 6899999999999 99885 667777777777777775 5788999999999999
Q ss_pred ccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCCh
Q 041698 147 IGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTP 226 (355)
Q Consensus 147 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~ 226 (355)
.+...+...++..|++|+++|+++.++...+..+|.++++.++..+.+. ..|||..|++.++..++..+..+++||++
T Consensus 121 ~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~--~~GWr~~f~i~a~l~ll~~l~~~~~~e~~ 198 (491)
T PRK11010 121 SASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR--YLGWQGMYWLMAALLIPCIIATLLAPEPT 198 (491)
T ss_pred HHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999988762 24899999998887766655555678765
Q ss_pred hHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcH
Q 041698 227 NSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYA 306 (355)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (355)
+.. ++ ++. . +++...++++.++++..+......+. .............
T Consensus 199 ~~~---~~-~~~------------~-------------~~~~~~~l~~~~~~~~~~~~ll~~~l---~~~~~~~~~~~~~ 246 (491)
T PRK11010 199 DTI---PV-PKT------------L-------------EQAVVAPLRDFFGRNNAWLILLLIVL---YKLGDAFAMSLTT 246 (491)
T ss_pred ccc---cc-ccc------------h-------------hhhHHHHHHHHHcCcCHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 310 00 000 0 00001123444443332222222211 1111112223344
Q ss_pred HHHHHhcCCCCcHHHHHHH-HHHHHHHHHhhhhhheecccCCccccc
Q 041698 307 PVLFNTIGFGSDASLMSAV-ITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 307 ~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
|++.++.|++..+.+.... ...++.+++.+++|+++||+++|+.+.
T Consensus 247 ~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~ 293 (491)
T PRK11010 247 TFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALM 293 (491)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5555678999999998874 556899999999999999999887654
No 73
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.89 E-value=1.3e-22 Score=179.75 Aligned_cols=247 Identities=14% Similarity=0.149 Sum_probs=173.3
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh-----chhHH-HHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHhhh
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQF-----GRKLS-MFFGGILFLAGALLNGFA---QAIWMLIVGRLLLGF 145 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~ 145 (355)
+|+|.++.++..+. .+...+ .+++|+++||+ ||||. ++.+.++.+++....++. .+.+.+....++.++
T Consensus 18 ~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~ 95 (356)
T TIGR00901 18 KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAF 95 (356)
T ss_pred cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHH
Confidence 39999999999766 455554 99999999998 89887 567777777777777776 566777888888888
Q ss_pred cccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC-----ccchHHHHhhhHHHHHHHHHHhc
Q 041698 146 GIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHG-----GWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 146 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~-----~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
+.+...++..+++.|++|+++|+++.++...+..+|.++++.+++.+.+..+ .++||..|++.++..++..+..+
T Consensus 96 ~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 96 FSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999999999988876322 13399999988887666555444
Q ss_pred c-ccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccc
Q 041698 221 I-LPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGI 299 (355)
Q Consensus 221 ~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (355)
+ .||+++. +.+.++ + + ++.+..++++++++..++.+......++. ....
T Consensus 176 ~~~~e~~~~---~~~~~~----------------~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 225 (356)
T TIGR00901 176 FLAKEPQED---ASVPKP----------------L--------T--QAVLKPIREFFQRKNMIQALLLLLLIVLY-KLGD 225 (356)
T ss_pred HhccCCCcc---cccchh----------------H--------H--HHHHHHHHHHHHhcCchHHHHHHHHHHHH-HHHH
Confidence 3 4664321 000000 0 0 00011233444433322223232222222 2333
Q ss_pred cchHhcHHHHHHhcCCCCcHHHHHHHHHH-HHHHHHhhhhhheecccCCcccccc
Q 041698 300 NVIMFYAPVLFNTIGFGSDASLMSAVITG-IVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 300 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.....+.|.+.++.|+++++.+......+ +..+++.++++++.||+|+|+.+..
T Consensus 226 ~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~ 280 (356)
T TIGR00901 226 SAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLL 280 (356)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 44555667676678999999888777666 5788999999999999998877653
No 74
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.89 E-value=2.4e-23 Score=188.20 Aligned_cols=240 Identities=12% Similarity=0.069 Sum_probs=177.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF-----AQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~ 150 (355)
+.+..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+..+. .++++.+++.|++.|++.+..
T Consensus 48 ~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 127 (417)
T PRK10489 48 TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLG 127 (417)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 668899999999999999999999999999999999999988887777665442 467899999999999998888
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHH
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSII 230 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 230 (355)
.+...+++.|+.|+++|+++.++......+|..+||.+++.+.+ ..+|++.|++.++..++..+..+.+||+++..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 203 (417)
T PRK10489 128 VTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA---AGGVAWNYGLAAAGTFITLLPLLRLPALPPPP- 203 (417)
T ss_pred HHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC-
Confidence 88889999999999999999999999999999999999999876 45799999887777666655566677654210
Q ss_pred hcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH
Q 041698 231 ERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF 310 (355)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (355)
.+.++ ..++ .++.++..++++..+......+. .. . ......+.|.+.
T Consensus 204 --~~~~~----------------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~---~~-~-~~~~~~~~p~~~ 250 (417)
T PRK10489 204 --QPREH----------------PLRS----------LLAGFRFLLASPVVGGIALLGGL---LT-M-ASAVRVLYPALA 250 (417)
T ss_pred --ccccc----------------chHH----------HHHHHHHHHcChHHHHHHHHHHH---HH-H-HHhHHHhhHHHH
Confidence 00000 0000 00112222332222111111111 11 1 123445567677
Q ss_pred Hh-cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 311 NT-IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 311 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
++ .|.++...+.......++.+++.++.+++.||.++++.+.
T Consensus 251 ~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~ 293 (417)
T PRK10489 251 DEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLML 293 (417)
T ss_pred HhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHH
Confidence 66 8999999999999999999999999999999877666543
No 75
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.89 E-value=1.5e-21 Score=174.99 Aligned_cols=237 Identities=14% Similarity=0.189 Sum_probs=160.1
Q ss_pred ccccCCcchhHHHHHHHH-HHHHHHHHhhhhhhhhhchhHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccc
Q 041698 73 QYCQYDSETLTMFTSSLY-LAALLSSLVASRVTRQFGRKLSM-FFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~-l~~~~~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 150 (355)
+|+|+|.+++|++.+... .++.++.+++++ +||+||||.+ +.+.++.+++..+.+++++++.+++.+.+.|...+..
T Consensus 44 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 122 (393)
T PRK15011 44 DEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTA 122 (393)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 344999999999987654 466666666666 9999999875 5566666677788889999998877666555555567
Q ss_pred ccchhhhhhhcCCCCcc--cchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccCChh
Q 041698 151 NQSVPLYLSEMAPYRFR--GALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPDTPN 227 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~ 227 (355)
.+....+..|+.++++| +...+....+.++|.+++|++++.+.+ +.|||..|++.++..++..+. .+++||+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~---~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~ 199 (393)
T PRK15011 123 NPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAM---GFSFTVMYLSAAVAFIVCGVMVWLFLPSMRK 199 (393)
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHH---hcChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence 78888888888766655 344578888999999999999999987 568999999888776655444 455777652
Q ss_pred HHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHH
Q 041698 228 SIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAP 307 (355)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (355)
.. ++ ++ + + .. ...+++ +..+......... .........+.|
T Consensus 200 ~~---~~-~~-------------------------~-~---~~---~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~p 240 (393)
T PRK15011 200 EL---PL-AT-------------------------G-T---LE---APRRNR--RDTLLLFVICTLM-WGTNSLYIINMP 240 (393)
T ss_pred CC---cc-cc-------------------------c-c---cc---cccccc--ccHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 10 00 00 0 0 00 000011 1111111111111 122233344566
Q ss_pred HHH-HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 308 VLF-NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 308 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
.+. +++|+++.+.+.+.....++.+++.++.|+++||++||+.+.
T Consensus 241 ~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~ 286 (393)
T PRK15011 241 LFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMR 286 (393)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 555 568999888888888777888999999999999999998654
No 76
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.89 E-value=7.9e-22 Score=176.96 Aligned_cols=235 Identities=13% Similarity=0.163 Sum_probs=171.4
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccc
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
++|+|..+.|++.+...++..+.+++.|+++||+|||+++..+.++.+++.+.+.++++++.+++.|+++|++.+...+.
T Consensus 40 ~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~ 119 (400)
T PRK11646 40 QLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPP 119 (400)
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred hhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccCChhHHHhc
Q 041698 154 VPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPDTPNSIIER 232 (355)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~ 232 (355)
..+++.|++|+++|++++++.....++|..+||.+++.+.+ ++||+.|++.++..++..+. .++.||.+.
T Consensus 120 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~----~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~----- 190 (400)
T PRK11646 120 RTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ----YDFRLVCATGAVLFVLAAAFNAWLLPAYKL----- 190 (400)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHhCCcccc-----
Confidence 99999999999999999999999999999999999999874 58999999887765554433 344554311
Q ss_pred CChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHh
Q 041698 233 GRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNT 312 (355)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (355)
.+.++ +.++.+++.++++........... . .........+.|.+.++
T Consensus 191 ~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~p~~~~~ 237 (400)
T PRK11646 191 STVRT-----------------------------PVREGMTRVLRDKRFVTYVLTLTG-Y---YMLAVQVMLMLPIMVND 237 (400)
T ss_pred cccch-----------------------------hhHHHHHHHHcCchHHHHHHHHHH-H---HHHHHHHHHhhhhhHHh
Confidence 00000 001123333333222111111111 1 11111234567777777
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHhhhhhheec-ccCCccc
Q 041698 313 IGFGSDASLMSAVITGIVNVVATMVSIYGVD-KWGRRFL 350 (355)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~r~~ 350 (355)
.+.++.+.+.......+....+....++..| |.+.++.
T Consensus 238 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 276 (400)
T PRK11646 238 IAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHR 276 (400)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 6667778888877777776666555555554 4554443
No 77
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.89 E-value=4.3e-22 Score=177.82 Aligned_cols=238 Identities=11% Similarity=0.065 Sum_probs=168.2
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSM----FFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l----~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|+|..+++++.+++.+...++++++|+++||+||++.. ..+..+..+ ..+..+++++.+++.|.++|.+.+...
T Consensus 35 g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~ 112 (382)
T TIGR00902 35 GLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGM 112 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccch
Confidence 99999999999999999999999999999999985433 222222222 234467899999999999999888888
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHh
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIE 231 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 231 (355)
|...++..++ +++|++..+....+.++|.+++|++++.+.+ ..|||..|++.....++..+ .+.++|+++.
T Consensus 113 p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~---~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~--- 183 (382)
T TIGR00902 113 PIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIG---MFDEQNILAILTAGLAFMLI-GFLIKPTIPP--- 183 (382)
T ss_pred hHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHH---HcChhHHHHHHHHHHHHHHH-HHHcCCCCCC---
Confidence 8888887665 4778999999999999999999999999988 57899999876654333322 2233333210
Q ss_pred cCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH
Q 041698 232 RGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN 311 (355)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (355)
+++.++ ++.++.++.++++|++. .+......++ ..........+.|.+.+
T Consensus 184 ~~~~~~--------------------------~~~~~~~~~~~~l~~~~---~~~~l~~~~l-~~~~~~~~~~~~~~~l~ 233 (382)
T TIGR00902 184 KDAIPE--------------------------DESQGDSAFIALLKNPM---NLRFLAAVCL-IQGAHAAYYGFSAIYWQ 233 (382)
T ss_pred Cccccc--------------------------cccccchhHHHHHcChH---HHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 000000 00001122344444432 2222222222 22334455556677778
Q ss_pred hcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 312 TIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
+.|.++.+.+.......++.+++..+.+++.||+++|+++.++
T Consensus 234 ~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~ 276 (382)
T TIGR00902 234 AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLIS 276 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHH
Confidence 8999999999999999999999999999999999999877653
No 78
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.89 E-value=5.9e-22 Score=178.23 Aligned_cols=262 Identities=13% Similarity=0.163 Sum_probs=184.3
Q ss_pred hhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh-----ch
Q 041698 35 LIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQF-----GR 109 (355)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-----Gr 109 (355)
+..|...+..... +|.++++. |+|.+++|++..+... .+..+++|+++||+ ||
T Consensus 9 ~~~~~~~~~~~~~--~~~~l~~~------------------g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~ 66 (402)
T PRK11902 9 FASGLPLALTSGT--LQAWMTVE------------------GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGR 66 (402)
T ss_pred HHHhhhHHHHHHH--HHHHHHHc------------------CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCc
Confidence 3344444444433 67777665 9999999999777765 69999999999999 87
Q ss_pred hH-HHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHH
Q 041698 110 KL-SMFFGGILFLAGALLNGFA---QAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIA 185 (355)
Q Consensus 110 r~-~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~ 185 (355)
|| .++++.++.+++..+.++. ++++.+.+..++.++..+...++..+++.|+.|+++|+++.++...+..+|.+++
T Consensus 67 rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g 146 (402)
T PRK11902 67 RRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVS 146 (402)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHH
Confidence 75 7888888888888777776 4578888888888888888899999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Q 041698 186 NVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEAS 265 (355)
Q Consensus 186 ~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (355)
+.++..+.+. ..+||..|++.++..++..+..+++||++++. ++.++..
T Consensus 147 ~~l~~~l~~~--~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~~~-------------------------- 195 (402)
T PRK11902 147 GGLALWLADR--VLGWGNTYLLMAGLMLAGALTTLWAPEPEVPA---RPPRSLG-------------------------- 195 (402)
T ss_pred hHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cccchhH--------------------------
Confidence 9999888762 14899999988887666555555677764320 0000000
Q ss_pred hccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHH-HHHHHHhhhhhheecc
Q 041698 266 RQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITG-IVNVVATMVSIYGVDK 344 (355)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~ 344 (355)
++.++.++++++++..+......++...... .......+++.++.|+++++.+......+ ++.+++.++++++.||
T Consensus 196 ~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~---~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r 272 (402)
T PRK11902 196 EAVVGPLRDFFSRRGAWALLLLIVLYKLGDA---FAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR 272 (402)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHhHHH---HHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 0001124445554443332222222111111 11123345556678999998888876654 4689999999999999
Q ss_pred cCCccccc
Q 041698 345 WGRRFLFL 352 (355)
Q Consensus 345 ~g~r~~~~ 352 (355)
+++|+.+.
T Consensus 273 ~g~~~~l~ 280 (402)
T PRK11902 273 LGLYRSLM 280 (402)
T ss_pred HhHHHHHH
Confidence 99887654
No 79
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.88 E-value=8.1e-22 Score=176.12 Aligned_cols=237 Identities=15% Similarity=0.133 Sum_probs=166.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchh----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRK----LSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr----~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|.|..++|++.+++.++..++++++|+++||+||| +.+.+...+. .......++++|.+++.|++.|++.+...
T Consensus 35 g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~ 112 (382)
T PRK11128 35 GYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLV 112 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccc
Confidence 88999999999999999999999999999999984 3333222221 22223345889999999999999988888
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHh
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIE 231 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 231 (355)
+...++..++ +++|++..+......++|..++|++++++.+ +++||..|++.++..++..+..++.||+++.
T Consensus 113 ~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~---~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~--- 184 (382)
T PRK11128 113 PLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS---WFGEQAILWILTAGVASMLLGQLLRPTIMPQ--- 184 (382)
T ss_pred cHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH---HcChhHHHHHHHHHHHHHHHHHHccCCCCCc---
Confidence 9888887776 4568888899999999999999999999987 5789999987776544444333444543210
Q ss_pred cCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH
Q 041698 232 RGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN 311 (355)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (355)
++.++ +.++...+++++++++..+.... ..++.. ........+.+.+.+
T Consensus 185 -~~~~~--------------------------~~~~~~~~~~~i~~~~~~~~~~~---~~~l~~-~~~~~~~~~~~~~~~ 233 (382)
T PRK11128 185 -GESRQ--------------------------QESAGWPAWKALLKEPTVWRFLL---CVSLLQ-GSHAAYYGFSAIYWQ 233 (382)
T ss_pred -ccccc--------------------------ccccccchHHHHHcChhHHHHHH---HHHHHH-HHhHhHHHHHHHHHH
Confidence 00000 00001223455555443322222 222221 222334455566667
Q ss_pred hcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 312 TIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
+.|+++.+.+.......++.++..++.+++.||+++|+.+..
T Consensus 234 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~ 275 (382)
T PRK11128 234 AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLL 275 (382)
T ss_pred HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 789998889999898889999999999999999999987654
No 80
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.88 E-value=3.7e-21 Score=168.58 Aligned_cols=154 Identities=13% Similarity=0.156 Sum_probs=135.9
Q ss_pred cccccCCcch-hHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccc
Q 041698 72 NQYCQYDSET-LTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 72 ~~~~~~s~~~-~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 150 (355)
.+|+|+|.++ .|.+.++++.+++++.++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+.|++.|+++|+.
T Consensus 53 ~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~ 132 (511)
T TIGR00806 53 LTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAAR 132 (511)
T ss_pred HHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHh---hhHHHHHHHHHHhccccCChh
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLG---GAMVPALIITVGSMILPDTPN 227 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~---~~~~~~~~~~~~~~~~~e~~~ 227 (355)
. +...++.+|+|+++|+++.++..++..+|.+++++++..+. +++||+.+. +......+.++..+++|..++
T Consensus 133 ~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~----s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~ 207 (511)
T TIGR00806 133 I-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV----TLGWISYSTLNIISLVFMTFSVFLALFLKRPKR 207 (511)
T ss_pred H-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCchhHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 9 99999999999999999999999999999999999999944 367887554 334444445556678886665
Q ss_pred HHH
Q 041698 228 SII 230 (355)
Q Consensus 228 ~~~ 230 (355)
...
T Consensus 208 sl~ 210 (511)
T TIGR00806 208 SLF 210 (511)
T ss_pred hhh
Confidence 443
No 81
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.87 E-value=8e-22 Score=165.11 Aligned_cols=254 Identities=15% Similarity=0.167 Sum_probs=166.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
+.+....|.+.+.|.+.+.+.++.+|.++||+|||+++++|.+..++...+.+.++|+..+.++|++.|+..| ......
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~r 142 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIR 142 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHH
Confidence 4577889999999999999999999999999999999999999999999999999999777778999999976 566778
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc---CCCccchHHHHhhhHHHHHH-HHHHhccccCChhHHHh
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK---IHGGWGWRLSLGGAMVPALI-ITVGSMILPDTPNSIIE 231 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~---~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~ 231 (355)
++++|.+++++|+..++.....+++|.++||.+++++.+ ..+.+.+-.+-++..+.+.. .....+++||+-..
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~--- 219 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPL--- 219 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccc---
Confidence 999999999999999999999999999999999999987 33322222212222222222 33345678988321
Q ss_pred cCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhcc-Cchh--HHHHHHHHHHHHHcccccchHhcHHH
Q 041698 232 RGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQK-KYRP--HLTMAVLIPFFQQFTGINVIMFYAPV 308 (355)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (355)
+++.++... .++. .+.+.+..... +..+ . ...|. +... ..+..+.+..+.....+....++.+.
T Consensus 220 rk~~~~~~~-~~~~---~~~~~~~~~~~------~~~~--v-~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~ 286 (451)
T KOG2615|consen 220 RKRNDEHST-LQEA---ADDRLALLKFA------RIFK--V-AALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLF 286 (451)
T ss_pred hhhcccccc-hhhh---hhhhhhhcchh------hhhh--h-hhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 111111000 0000 00000000000 0000 0 00111 1111 11122222222222223334444444
Q ss_pred HH-HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccC
Q 041698 309 LF-NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWG 346 (355)
Q Consensus 309 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 346 (355)
+. ..+|+++.+.|.+.+..++.+.+.+....+..+|..
T Consensus 287 l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~ 325 (451)
T KOG2615|consen 287 LTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYK 325 (451)
T ss_pred hhcCccCCChhhheeeeehhhHHHHHHHHhccccccccc
Confidence 42 558999999999999999999999888888887765
No 82
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.2e-23 Score=175.34 Aligned_cols=276 Identities=16% Similarity=0.165 Sum_probs=207.2
Q ss_pred HHHHhhhhhhhhccccccccccCchhhhhhhcccccccccc--------------------------------ccccccc
Q 041698 27 CIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQA--------------------------------NESTNQY 74 (355)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~ 74 (355)
....+++.+.+.+......++ +|.|+.+...+-...++. .+..+++
T Consensus 23 lviv~ialllDnmL~~vivPi--iP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~ 100 (464)
T KOG3764|consen 23 LVIVSIALLLDNMLYTVIVPI--IPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAIS 100 (464)
T ss_pred EEEEehhhhccCccceeeecc--CccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhccC
Confidence 334555667888888888888 788887765200000000 0122456
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
.+-+.+++|++..++.+.+.+.+++.|.+.||+|+|..+++|+.....+++++++.++|++++++|.+||+|.+...+..
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg 180 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG 180 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCc-ccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcC
Q 041698 155 PLYLSEMAPYRF-RGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERG 233 (355)
Q Consensus 155 ~~~~~~~~~~~~-r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 233 (355)
.+++++.+|++. |++++|+...+.++|.++||.+++.+.+ ..|.+.+|.+.+++.++-..+.+++-|..+.
T Consensus 181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe---~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~----- 252 (464)
T KOG3764|consen 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYE---FAGKSAPFLVLAIVLLLDGALQLLVIEPTEM----- 252 (464)
T ss_pred HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHh---hcCCcCcHHHHHHHHHHHHHHHHheeCcccc-----
Confidence 999999999765 7999999999999999999999999988 5689999999999988877776665433210
Q ss_pred ChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHH---H-H
Q 041698 234 RHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAP---V-L 309 (355)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~ 309 (355)
++++..+..++.++++.+.. ........++. ..+.+.-| . .
T Consensus 253 ----------------------------~~~~~~~~~~~~~Ll~dP~I---~~~agai~~~n----~~lafLePtlslwm 297 (464)
T KOG3764|consen 253 ----------------------------DPDSTEQGTPMWSLLMDPYI---LLIAGAITFSN----SSLAFLEPTLSLWM 297 (464)
T ss_pred ----------------------------CccccccCccHHHHHhCchH---hhhhcchhhcc----chHHHhCcccHHHH
Confidence 00012223445556555432 22222222221 12222222 2 3
Q ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCC
Q 041698 310 FNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGR 347 (355)
Q Consensus 310 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 347 (355)
.+....+.-+.|..+...++...+++.+.|.+.||+++
T Consensus 298 ~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~ 335 (464)
T KOG3764|consen 298 LETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPH 335 (464)
T ss_pred HHhccCCCcceeeeecccccchhccCchHHHHHHhcCc
Confidence 34555445578899999999999999999999999984
No 83
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.86 E-value=1.3e-20 Score=169.22 Aligned_cols=244 Identities=16% Similarity=0.094 Sum_probs=159.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH---Hh-----hHHHHHHHHHHHhhhcc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNG---FA-----QAIWMLIVGRLLLGFGI 147 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~-----~~~~~l~~~r~l~G~~~ 147 (355)
|++..+.+++.+++.++..+++++.|+++||+|||+.++.+....+++..... +. +.+..+++.+++.|++.
T Consensus 34 g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 113 (396)
T TIGR00882 34 GLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVF 113 (396)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999887776655443221 11 23445667788899988
Q ss_pred cccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcc-ccCCh
Q 041698 148 GFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMI-LPDTP 226 (355)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~e~~ 226 (355)
+...+....+..|.. ++++...+......++|.+++|.+++.+.+ .+||..|++.+++.++..+..+. .||+|
T Consensus 114 ~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (396)
T TIGR00882 114 SAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS----IDPQIVFWLGSGFALILMLLLMFAKPKAP 187 (396)
T ss_pred ccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc----cCchHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 888888887777753 334566777888889999999999998764 58999999888777665544443 34443
Q ss_pred hHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcH
Q 041698 227 NSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYA 306 (355)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (355)
+.. +.+++ .+ .++++.+.++..++++++..+. .... .+.....+.....+.
T Consensus 188 ~~~----~~~~~-------~~--------------~~~~~~~~~~~~~~l~~~~~~~---~~l~-~~~~~~~~~~~~~~~ 238 (396)
T TIGR00882 188 SSA----TVANA-------LG--------------ANASAFSLKLALELFRQRKFWM---FVLY-VVGVACVYDVFDQQF 238 (396)
T ss_pred hhh----hhhcc-------cc--------------cccCCCCHHHHHHHHcCCcHHH---HHHH-HHHHHHHHHHHHHHH
Confidence 210 00000 00 0000011122344444433222 1111 111112222233344
Q ss_pred HHHHHhc----CCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 307 PVLFNTI----GFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 307 ~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
+.+.++. +.+....+...+...+..+++....+++.||+++|+.++++
T Consensus 239 ~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~ 290 (396)
T TIGR00882 239 ANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIA 290 (396)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 5444432 44556678888888889999999999999999999977543
No 84
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.86 E-value=2.3e-20 Score=189.26 Aligned_cols=248 Identities=13% Similarity=0.047 Sum_probs=170.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHhhhcccccccch
Q 041698 78 DSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNG---FAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 78 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
+....+++.+++.+++.++++++|+++||+|||++++++.++.+++.++.. .+++++.++++|+++|++.+...++.
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence 345679999999999999999999999999999999999877666655443 45789999999999999999999999
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCC------CccchHHHHhhhHHH-HHHHHHHhccccCChh
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIH------GGWGWRLSLGGAMVP-ALIITVGSMILPDTPN 227 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~------~~~~w~~~~~~~~~~-~~~~~~~~~~~~e~~~ 227 (355)
.+++.|++|+++|++++++...+..+|.++++.+++++.... +..+|++.+.+..+. .++.++..+.+||+|+
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA 204 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 999999999999999999999999999999999999987630 001344444333333 3333344456777764
Q ss_pred HHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHH
Q 041698 228 SIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAP 307 (355)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (355)
....+.+.++ ... .+.....++.+++.+..+..++...+.++ .......+.|
T Consensus 205 ~~~~~~~~~~-----------~~~-------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 256 (1146)
T PRK08633 205 AAPEVFDKKK-----------YLF-------------PKLLWRNLKLLRSDRVLWLAIIGLSYFWF----ISQLAQANFP 256 (1146)
T ss_pred CCcccccccc-----------ccc-------------HHHHHHHHHHHhcCcHHHHHHHHHHHHHH----HHHHHHHhhH
Confidence 2111000000 000 00001123333333322222222222111 1222333444
Q ss_pred HHH-HhcCCCCc-HHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 308 VLF-NTIGFGSD-ASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 308 ~~~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.+. +.+|++.. ..+++.+...++.+++.++.+++.||+++++.+.+
T Consensus 257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~ 304 (1146)
T PRK08633 257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPL 304 (1146)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhH
Confidence 444 56899988 88999999999999999999999999998876654
No 85
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.85 E-value=9.2e-21 Score=191.61 Aligned_cols=239 Identities=12% Similarity=0.051 Sum_probs=168.5
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhh
Q 041698 80 ETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFF---GGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPL 156 (355)
Q Consensus 80 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 156 (355)
...++..+++.+.+.++++++|+++||+|||+++.. +.++..+..+.....++++.++++|+++|++.+...|+..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 567888999999999999999999999999998643 22233333333334589999999999999999999999999
Q ss_pred hhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChH
Q 041698 157 YLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHE 236 (355)
Q Consensus 157 ~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 236 (355)
++.+++++++|++++++..++.++|.++||++++++.. ..+|++.|+..++..++.+++.+++|+++.... ..+.+
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 207 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI---SGNFVILVALLMGIAVLGWLASLFIPKTGNAAP-DLKID 207 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHHHhhCCCCCCCCC-CCeec
Confidence 99999999999999999999999999999999999987 468999986555555555555666776542100 00000
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH-hcCC
Q 041698 237 EAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN-TIGF 315 (355)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~ 315 (355)
.. ..++ ....++.+.+.+..+. ..+..+........+..+.|.+.+ .+|.
T Consensus 208 ~~---------------~~~~----------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~p~~~~~~~g~ 258 (1140)
T PRK06814 208 RN---------------IIRS----------TITLLKYAKADKRIWL----AILGISWFWLVGAVVLSQLPLLAKETLGG 258 (1140)
T ss_pred cc---------------hHHH----------HHHHHHHHhcCchHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHcCC
Confidence 00 0000 0012333333332222 222222222222344445666664 4799
Q ss_pred CCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccc
Q 041698 316 GSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLF 351 (355)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~ 351 (355)
++...+.+.+..+++.+++.++.+++.|+..+++.+
T Consensus 259 ~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~ 294 (1140)
T PRK06814 259 DENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYV 294 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeee
Confidence 999999999999999999999999999887766544
No 86
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.85 E-value=1.2e-19 Score=165.39 Aligned_cols=138 Identities=24% Similarity=0.368 Sum_probs=116.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhh
Q 041698 78 DSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLY 157 (355)
Q Consensus 78 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 157 (355)
+.....|+.+++.++..++.++.|+++|.||||.+++.+.++..+|+++++.++|...++++..+.|+|.|.... ....
T Consensus 76 ~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~ 154 (599)
T PF06609_consen 76 GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALA 154 (599)
T ss_pred CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHH
Confidence 457778999999999999999999999999999999999999999999999999999999999999999877664 4556
Q ss_pred hhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh
Q 041698 158 LSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS 219 (355)
Q Consensus 158 ~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 219 (355)
++|..|.|.|.....+...........++.++..+.. +.+|||.|++..+...+.++..
T Consensus 155 isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~---~~~WRw~~~~~~i~~~i~~vl~ 213 (599)
T PF06609_consen 155 ISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA---HSGWRWIFYIFIIWSGIALVLI 213 (599)
T ss_pred HHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc---CCCcchHHHHHHHHHHHHHHHH
Confidence 8999999999877776666655555567777766554 4589999998888766655443
No 87
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.85 E-value=9e-20 Score=154.73 Aligned_cols=266 Identities=13% Similarity=0.122 Sum_probs=202.1
Q ss_pred hhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchh
Q 041698 31 AMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRK 110 (355)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr 110 (355)
+.-.++.|+......+. +|.+++.| +++..+.+++..+++.|+.+.+++.|++.+|+|+|
T Consensus 19 t~lFfl~G~~~~l~diL--ip~l~~~f------------------~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk 78 (422)
T COG0738 19 TSLFFLWGFITCLNDIL--IPHLKEVF------------------DLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYK 78 (422)
T ss_pred HHHHHHHHHHhhcchhh--HHHHHHHh------------------CccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhH
Confidence 33345666655555555 66666666 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHH
Q 041698 111 LSMFFGGILFLAGALLNG---FAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANV 187 (355)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~ 187 (355)
+.+++++.+.++++.++. ..++|..++++-++.|.|.+...++...++....+++.-.+.+++.+...++|.+++|+
T Consensus 79 ~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~ 158 (422)
T COG0738 79 AGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPL 158 (422)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHH
Confidence 999999999999999884 66889999999999999999999999999999999988899999999999999999999
Q ss_pred HHHHhhcCC-----C-----------ccchHHHHhhhHHHHHHHHHHhcc--ccCChhHHHhcCChHHHHHHHHHHhCCC
Q 041698 188 LNYFFNKIH-----G-----------GWGWRLSLGGAMVPALIITVGSMI--LPDTPNSIIERGRHEEAREELRKVRGVN 249 (355)
Q Consensus 188 i~~~~~~~~-----~-----------~~~w~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (355)
+++.+.... + -..|+++|...+...+++.+.... .|+.+..
T Consensus 159 ~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~--------------------- 217 (422)
T COG0738 159 LGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA--------------------- 217 (422)
T ss_pred HHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc---------------------
Confidence 999887620 0 124788887777665555554433 3433210
Q ss_pred ccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHh-cCCCCcHHHHHHHHHH
Q 041698 250 DVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNT-IGFGSDASLMSAVITG 328 (355)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~ 328 (355)
.++..+.++....++++.++.+ ...++.++..........+.+.+..+ .|+++.++....+..+
T Consensus 218 -----------~~~~~~~~~~~~~~l~~~~~~~----~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~ 282 (422)
T COG0738 218 -----------APSLGASGSAGLSSLFQNKHLR----LGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFW 282 (422)
T ss_pred -----------cccccccccchHHHHHhChHHH----HHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 0000111111344555544333 33333444444555666777777766 8999999999999999
Q ss_pred HHHHHHhhhhhheecccCCccccc
Q 041698 329 IVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 329 ~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
++.++|++++-++..|+...|.+.
T Consensus 283 ~~~~vGRFig~~lm~~~~~~k~La 306 (422)
T COG0738 283 VGFMVGRFIGSALMSRIKPEKYLA 306 (422)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHH
Confidence 999999999999999998777654
No 88
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.85 E-value=1.2e-19 Score=164.37 Aligned_cols=244 Identities=17% Similarity=0.086 Sum_probs=146.2
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH---Hhh-----HHHHHHHHHHHhhhc
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNG---FAQ-----AIWMLIVGRLLLGFG 146 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~-----~~~~l~~~r~l~G~~ 146 (355)
+|+|..+.|++.+++.++..+++++.|+++||+|||++++++..+.+++..... .++ .....++++++.|.+
T Consensus 41 ~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (420)
T PRK09528 41 NGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFG 120 (420)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 399999999999999999999999999999999999999887666554433211 111 111123334444443
Q ss_pred ccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccc-cCC
Q 041698 147 IGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMIL-PDT 225 (355)
Q Consensus 147 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~e~ 225 (355)
.....+....+..+ . .+++++.++......++|..++|.+++.+.+ .+|++.|++.++..++..+..+++ +|+
T Consensus 121 ~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 194 (420)
T PRK09528 121 FLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN----INPQINFWLGSGSALILLVLLFFAKPDA 194 (420)
T ss_pred hccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh----cCchHhHHHHHHHHHHHHHHHhcccccc
Confidence 33333333333322 2 3456788888889999999999999998875 479999998887766655555444 343
Q ss_pred hhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhc
Q 041698 226 PNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFY 305 (355)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (355)
++....+++ ++ .++++...+...+.++++..+......+.... .......+
T Consensus 195 ~~~~~~~~~-~~------------------------~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~----~~~~~~~~ 245 (420)
T PRK09528 195 PSTAKVANA-LG------------------------ANASAVSLKDALALLKLPKFWFLVLYVIGVAC----FYDVFDQQ 245 (420)
T ss_pred cchhhhccc-hh------------------------cccccccHHHHHHHccCCCeEeehHHHHHHHH----HHHHHHHH
Confidence 321000000 00 00000001112233333322221211111111 11112222
Q ss_pred HHHHHH----hcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 306 APVLFN----TIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 306 ~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.|.+.. +.+.+..+.+...+...+..+++.++.|++.||+++|+.+.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~ 297 (420)
T PRK09528 246 FPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLL 297 (420)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHH
Confidence 333332 235666677888888899999999999999999999987654
No 89
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.83 E-value=8.2e-19 Score=160.49 Aligned_cols=135 Identities=16% Similarity=0.182 Sum_probs=121.4
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHhhhcccccc
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTRQ-FGRKLSMFFGGILFLAGALLNGFAQAIWM-LIVGRLLLGFGIGFAN 151 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~~g~~~ 151 (355)
++|++..+.+++.+.+.....+..+++|+++|| +||||+++++.++++++++.++++.+... +.++|+++|++.|...
T Consensus 44 ~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~ 123 (489)
T PRK10207 44 QLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFK 123 (489)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhcccccc
Confidence 349999999999999998888999999999999 99999999999999999999998876444 5589999999999999
Q ss_pred cchhhhhhhcCCCCc--ccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHH
Q 041698 152 QSVPLYLSEMAPYRF--RGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVP 211 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~ 211 (355)
+...+++.|.+|+++ |.++.++++.+.++|..++|.+++++.+ +.|||+.|++.++.
T Consensus 124 ~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~---~~gw~~~F~i~~i~ 182 (489)
T PRK10207 124 ANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD---KFGYSVTYNLCGAG 182 (489)
T ss_pred CCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH---hhChHHHHHHHHHH
Confidence 999999999998774 5789999999999999999999999988 57899999886543
No 90
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.83 E-value=8e-20 Score=166.05 Aligned_cols=270 Identities=20% Similarity=0.279 Sum_probs=194.3
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHhhhccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGR-LLLGFGIGFA 150 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r-~l~G~~~g~~ 150 (355)
+++++.+.++++|+.++......+..++.+.+.||+|.|.+.+.|.++..++.++.+|++++|.+++.. ++.|+|.|..
T Consensus 73 ~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~ 152 (509)
T KOG2504|consen 73 MDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLI 152 (509)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhh
Confidence 455588999999999999999999999999999999999999999999999999999999999998877 8899999999
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccc-cCChhHH
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMIL-PDTPNSI 229 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~e~~~~~ 229 (355)
+.+....+..++ +|+|+.+.++..++.++|..+-|.+..++.+ .+|||+.+++.+.+.+-.++....+ |.++...
T Consensus 153 ~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~---~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~ 228 (509)
T KOG2504|consen 153 YLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLS---KYGWRGALLIFGGISLNVLVAGALLRPLSPPKK 228 (509)
T ss_pred hcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHH---HhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCC
Confidence 999999999887 5779999999999999999999999999988 6899999998888876655554443 3222110
Q ss_pred HhcCChHHH--------HHHHH-HHhCCC--ccH---HHHHHHHHHHHHhh--ccccch----hhhhccCchhHHHHHHH
Q 041698 230 IERGRHEEA--------REELR-KVRGVN--DVE---EEFNDLVAASEASR--QVEHPW----KNLLQKKYRPHLTMAVL 289 (355)
Q Consensus 230 ~~~~~~~~~--------~~~~~-~~~~~~--~~~---~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~ 289 (355)
....++.+. ..... +....+ ... .+..+..+..+..+ ..+... .++++. +.++...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~----~~fl~~~ 304 (509)
T KOG2504|consen 229 PNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKD----PKFLLLA 304 (509)
T ss_pred chhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcC----chHHHHH
Confidence 000000000 00000 000000 000 00000000000000 001111 233333 3455555
Q ss_pred HHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcc
Q 041698 290 IPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRF 349 (355)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~ 349 (355)
+.......++.....++|.+.+..+++..++..+.++.++..++++++.|++.|+...++
T Consensus 305 ~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~ 364 (509)
T KOG2504|consen 305 LSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRA 364 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccch
Confidence 656666666777788888888899999999999999999999999999999999987443
No 91
>PTZ00207 hypothetical protein; Provisional
Probab=99.83 E-value=3.2e-19 Score=163.49 Aligned_cols=150 Identities=17% Similarity=0.145 Sum_probs=121.5
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHhhh
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA------QAIWMLIVGRLLLGF 145 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~l~~~r~l~G~ 145 (355)
++++|+|..+.+++.+.. ...+.++++.|+++||+|||+++.++.+++.++.++++++ ++++.+++.|++.|+
T Consensus 54 ~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~ 132 (591)
T PTZ00207 54 QARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTL 132 (591)
T ss_pred HHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 444499999999998874 4556778889999999999999999999999999999987 689999999999999
Q ss_pred cccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHH-HHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccc-
Q 041698 146 GIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILI-ANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MIL- 222 (355)
Q Consensus 146 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~- 222 (355)
+.+...+.....+.+|+| ++||++.++...+.++|.++ +++..+++.+ +|+..|++.+++.++..+.. .++
T Consensus 133 G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~-----~~~~~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 133 GCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD-----NTSAYFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred HHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHhhee
Confidence 999999999999999996 77999999999999999975 5555555443 57777777777766554433 333
Q ss_pred -cCChhH
Q 041698 223 -PDTPNS 228 (355)
Q Consensus 223 -~e~~~~ 228 (355)
|+.+++
T Consensus 207 ~p~~~~~ 213 (591)
T PTZ00207 207 LPPFHLT 213 (591)
T ss_pred CCcchhh
Confidence 444444
No 92
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.82 E-value=3e-18 Score=143.47 Aligned_cols=237 Identities=19% Similarity=0.213 Sum_probs=191.3
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
++|+|+|.+..|+++++..+...+.+++..+++.|+|.++.+..++++.+++.++-... +.+.++.+-.+.|.+.+...
T Consensus 39 r~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~n 117 (395)
T COG2807 39 RQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVIN 117 (395)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHH
Confidence 55669999999999999999999999999999999999999999999999999998877 77889999999999999999
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHh
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIE 231 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 231 (355)
...+.++.+.+|+ +-+..+++|....++|..+++.++..+.+.. .+||.....-+.++++.++.++ |...|.
T Consensus 118 VLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~--~gW~~aL~~WAl~allAl~~Wl--Pq~~r~--- 189 (395)
T COG2807 118 VLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHS--GGWRGALGFWALLALLALLIWL--PQALRE--- 189 (395)
T ss_pred HhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhh--ccHHHHHHHHHHHHHHHHHHHh--hhcccc---
Confidence 9999999999974 4699999999999999999999999998743 3799988887887777665543 332110
Q ss_pred cCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH
Q 041698 232 RGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN 311 (355)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (355)
+ ......+..+...+++++ ..+...+++..+...++....|+|.++.
T Consensus 190 --~---------------------------~~~~~~~~~~~~~vw~~~----~aW~vtLfmGlqS~~~Y~~~~WLP~ili 236 (395)
T COG2807 190 --Q---------------------------AASIATKLVSVRKVWRSP----LAWQVTLFMGLQSLLYYIVIGWLPAILI 236 (395)
T ss_pred --c---------------------------ccccccccccccccccCc----hhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 0 000111112223344443 3444455556666677888999999999
Q ss_pred hcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccc
Q 041698 312 TIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFL 350 (355)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~ 350 (355)
+.|+|+.+++.+.+...+..++.++....+.+|...++.
T Consensus 237 ~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~ 275 (395)
T COG2807 237 DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRP 275 (395)
T ss_pred HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 999999999999999999999999999999997654443
No 93
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.81 E-value=4.3e-18 Score=155.69 Aligned_cols=141 Identities=17% Similarity=0.239 Sum_probs=128.0
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccc
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQ-FGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
+|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++++++.+.++|++.|++.|...+.
T Consensus 43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 122 (475)
T TIGR00924 43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKAN 122 (475)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCC
Confidence 48999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCc---ccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH
Q 041698 154 VPLYLSEMAPYRF---RGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG 218 (355)
Q Consensus 154 ~~~~~~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 218 (355)
..++++|++|+++ |+++.++.+.+.++|.+++|.+++.+.+ +.+|++.|.+.++..++..+.
T Consensus 123 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~---~~g~~~~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 123 PSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE---NYGYHVGFNLAAVGMVIGLLT 187 (475)
T ss_pred HHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH---hcChHHHHHHHHHHHHHHHHH
Confidence 9999999998764 8889999999999999999999999987 568999998877554444333
No 94
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.80 E-value=3.9e-19 Score=160.28 Aligned_cols=241 Identities=8% Similarity=0.011 Sum_probs=155.5
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhch-hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGR-KLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 150 (355)
++++|++.+++|++.+++.++..++++++|+++||+|| |+++.++.++..++..+..+.++++.+.+.|++.|++.+..
T Consensus 30 ~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 109 (418)
T TIGR00889 30 SKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPT 109 (418)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccH
Confidence 34459999999999999999999999999999999964 78888888888888888889999999999999999987766
Q ss_pred ccchhhhhh--------hcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccc
Q 041698 151 NQSVPLYLS--------EMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMIL 222 (355)
Q Consensus 151 ~~~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 222 (355)
.+...++.. |......|.+..+ .+|.+++|.+++.+.. ...|+. |++.++..++..+..+++
T Consensus 110 ~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~---~~~~~~-f~~~~~~~~~~~~~~~~~ 179 (418)
T TIGR00889 110 IALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDI---ELSNIQ-LYITAGSSALLGVFALTL 179 (418)
T ss_pred HHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcc---cchhHH-HHHHHHHHHHHHHHHhcC
Confidence 665554432 2222233445444 3678888888887743 234554 445555555544455677
Q ss_pred cCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccch
Q 041698 223 PDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVI 302 (355)
Q Consensus 223 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (355)
||+|+.. ++.++ + . ++ ..+.+.++.+|.+.....+...++. . ......
T Consensus 180 ~e~~~~~---~~~~~------------~----------~-~~--~~~~~~~~~~k~~~~~~~~~~~~~~---~-~~~~~~ 227 (418)
T TIGR00889 180 PDIPVAK---STAKM------------S----------I-KV--MLGLDAFILFKNKRMAIFFFFSMLL---G-APLQIT 227 (418)
T ss_pred CCCCCCc---ccccc------------C----------H-HH--HhhhhHHHHhcCCCeeeHHHHHHHH---H-hHHHHH
Confidence 8875310 00000 0 0 00 0001122333333322222222221 1 111223
Q ss_pred HhcHHHHHHhcCCCC--------cHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 303 MFYAPVLFNTIGFGS--------DASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 303 ~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
..+.+.+.++.|.++ ...+...+...+..+++.+..++++||+|+|+++..+
T Consensus 228 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~ 287 (418)
T TIGR00889 228 NIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLS 287 (418)
T ss_pred HHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 344455566666443 5568888889999999999999999999999887643
No 95
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.79 E-value=5.7e-19 Score=160.82 Aligned_cols=246 Identities=13% Similarity=0.136 Sum_probs=163.5
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhhh----hchh-HHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHH
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTRQ----FGRK-LSMFFGGILFLAGALLNGFAQA------IWMLIVGRLL 142 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l 142 (355)
++|++..++|++.++..+..++..++.|+++|| +||| +.++++....+++.+++.+.++ .+.+++.+++
T Consensus 29 ~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (437)
T TIGR00792 29 VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYIL 108 (437)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 349999999999999999999999999999998 6874 5677888888888777766543 4667778888
Q ss_pred hhhcccccccchhhhhhhcC-CCCcccchhhHHHHHHHHHHHHHHHHHHHhhcC----CCccchHHHHhhhHHHHHHHHH
Q 041698 143 LGFGIGFANQSVPLYLSEMA-PYRFRGALNIGFQLSITVGILIANVLNYFFNKI----HGGWGWRLSLGGAMVPALIITV 217 (355)
Q Consensus 143 ~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~----~~~~~w~~~~~~~~~~~~~~~~ 217 (355)
.+++.+...++..++..|.. ++++|++..++...+..+|..+++.+.+.+... .+..+||+.+.+.+++.++..+
T Consensus 109 ~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~ 188 (437)
T TIGR00792 109 LGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLI 188 (437)
T ss_pred HHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHH
Confidence 89988888888888888887 468899999999888888887777665554421 1246899999888887666554
Q ss_pred H-hccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHc
Q 041698 218 G-SMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQF 296 (355)
Q Consensus 218 ~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (355)
. .+.++|+++. .+.++ +++.+.++.++++++++.. +..... .+...
T Consensus 189 ~~~~~~~e~~~~----~~~~~-------------------------~~~~~~~~~~~~l~~~~~~---~~~~~~-~~~~~ 235 (437)
T TIGR00792 189 ICFFGTKERYSE----IPKNI-------------------------EKKLSLKQIFKALFKNDQL---LILCLA-YLFYN 235 (437)
T ss_pred HHHcCCEecCCC----CCccc-------------------------ccCCCHHHHHHHHhCCHHH---HHHHHH-HHHHH
Confidence 4 4556765420 00000 0000001122333333222 222212 11111
Q ss_pred ccccchHhcHHHHHHh-cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 297 TGINVIMFYAPVLFNT-IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 297 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
........+.+++.+. .+ ++...+.......++.+++.++.++++||+|+|+.+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~ 292 (437)
T TIGR00792 236 LAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAG 292 (437)
T ss_pred HHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 2222222233444332 33 34556677777789999999999999999999987654
No 96
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.76 E-value=1e-17 Score=154.41 Aligned_cols=170 Identities=16% Similarity=0.161 Sum_probs=131.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHhhhccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALL---NGFAQAIWMLIVGRLLLGFGIGFANQ 152 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~G~~~g~~~~ 152 (355)
|++..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+. ...+++...+++++++.|++.+....
T Consensus 282 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 361 (490)
T PRK10642 282 HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTG 361 (490)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 777778888888889999999999999999999999988887655443332 22234577788899999887777777
Q ss_pred chhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhc
Q 041698 153 SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIER 232 (355)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 232 (355)
....++.|.+|++.|+++++.......++..++|.+.+++.+.. .+|+..++...+++++.++..+++||+|+++.++
T Consensus 362 ~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~--~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~ 439 (490)
T PRK10642 362 VMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST--QNLMMPAYYLMVVAVIGLITGVTMKETANRPLKG 439 (490)
T ss_pred HHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHHHHhccccCCCCCC
Confidence 77888899999999999999754445566678888888876532 2577776666666666666666789999987754
Q ss_pred -----CChHHHHHHHHHHhC
Q 041698 233 -----GRHEEAREELRKVRG 247 (355)
Q Consensus 233 -----~~~~~~~~~~~~~~~ 247 (355)
++.||+++.+.++++
T Consensus 440 ~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 440 ATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred ccccccchhhHHHHhhcccc
Confidence 888999999888863
No 97
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.76 E-value=1e-17 Score=150.14 Aligned_cols=265 Identities=11% Similarity=-0.002 Sum_probs=173.1
Q ss_pred HhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHH--HHHHHHHHHHHHHhh-hhhhhh
Q 041698 30 AAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMF--TSSLYLAALLSSLVA-SRVTRQ 106 (355)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~s~~~l~~~~~~~~~-g~l~dr 106 (355)
+...++..|...+...+. +|.+.++. |.|.+++|++ .+.+.+...+.+++. ++..||
T Consensus 6 ~~~ly~~~g~~~~~~~p~--lp~~l~~~------------------g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~ 65 (390)
T TIGR02718 6 LGLLYLSQGIPIGLAMDA--LPTLLRED------------------GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR 65 (390)
T ss_pred HHHHHHHHHhHHHHHHHH--HHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 334456677766666555 67777666 8999999997 466778887888888 557999
Q ss_pred hchhHHHHHHHHHH-HHHHHHHH---HhhH-HHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHH
Q 041698 107 FGRKLSMFFGGILF-LAGALLNG---FAQA-IWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVG 181 (355)
Q Consensus 107 ~Grr~~l~~~~~~~-~~~~~~~~---~~~~-~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 181 (355)
+||||..++...+. .+.....+ ...+ ...++..-++.++..+...+....+..|..++++++...+....+..+|
T Consensus 66 ~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG 145 (390)
T TIGR02718 66 LGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIG 145 (390)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHH
Confidence 99998876665332 22222222 1222 3344455555666677777778888888888888888888888888999
Q ss_pred HHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041698 182 ILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAA 261 (355)
Q Consensus 182 ~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (355)
.++++...+.+.+ ..+||..|++.++..++..+..++++|+++. +.+.++
T Consensus 146 ~~~g~~~~~~l~~---~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~~------------------------ 195 (390)
T TIGR02718 146 FFGGGAGTLVLFG---KFGQRPAFLLVACVPLASLVCVLWLKDRAVA---SPEAPL------------------------ 195 (390)
T ss_pred HHHHHHHHHHHHH---HhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC---ccccch------------------------
Confidence 9999988888877 5789999999888776655555444443210 000000
Q ss_pred HHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHH-HHHHHhhhhhh
Q 041698 262 SEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGI-VNVVATMVSIY 340 (355)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~ 340 (355)
++..+.++.+|++..+......++.. ........+.+.+.++.|+++++.+......++ ..+++.++.|+
T Consensus 196 -----~~~~~~~~~l~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~ 266 (390)
T TIGR02718 196 -----ARRASLFRFFRRPLAWSLLALALLSA----MTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAW 266 (390)
T ss_pred -----hhHHHHHHHHcCcCHHHHHHHHHHHH----HHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 00112344454443332222222221 222233345566667789999999998887764 66777899999
Q ss_pred eecccCCcccccc
Q 041698 341 GVDKWGRRFLFLE 353 (355)
Q Consensus 341 l~d~~g~r~~~~~ 353 (355)
+.||+++|+.+..
T Consensus 267 l~~r~g~~~~l~~ 279 (390)
T TIGR02718 267 LVRRAGLWRTFIL 279 (390)
T ss_pred HHHHhhHHHHHHH
Confidence 9999999987653
No 98
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.75 E-value=3.6e-17 Score=149.55 Aligned_cols=243 Identities=17% Similarity=0.192 Sum_probs=172.4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA-----QAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~ 150 (355)
.-|...++++..+..+...+.++++|.++||+.|||+++.+.++.++..++.++. .+.+.+++.-++.|++.+..
T Consensus 41 t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~ 120 (524)
T PF05977_consen 41 TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFF 120 (524)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHH
Confidence 4488999999999999999999999999999999999999998887766555432 47889999999999999999
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHH
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSII 230 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 230 (355)
.|+..+++.|..|+++...+.++.....++..++||.++|.+.. ..|-.+.|.+.++..++........+.+++.
T Consensus 121 ~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva---~~G~~~~f~inalsfl~~i~~l~~~~~~~~~-- 195 (524)
T PF05977_consen 121 NPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVA---FFGAAAAFLINALSFLISILALLRWKPPPPP-- 195 (524)
T ss_pred HHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHccccccc--
Confidence 99999999999999999999999999999999999999999876 3456777777665544433333333322110
Q ss_pred hcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH
Q 041698 231 ERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF 310 (355)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (355)
+...+| +. .+++ +..++-+.+.+..+..+....+ +. .....+...+|.+.
T Consensus 196 -~~~~~e--~~-------------~~~l----------~~G~ryv~~~~~l~~~l~~~~~-~~---l~~~a~~aLlPl~a 245 (524)
T PF05977_consen 196 -SSLPRE--RF-------------FSAL----------REGLRYVRSSPPLRSVLLRSFL-FN---LFASAVWALLPLFA 245 (524)
T ss_pred -cccchh--hh-------------hhhH----------HHHHHHHhcchHHHHHHHHHHH-HH---HhhhHHHHhhhHHH
Confidence 000000 00 0000 1111111122222221211111 11 11223334567666
Q ss_pred H-hcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 311 N-TIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 311 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
+ .+|.++...|++.+..+++.++|.++.+++.+|+++++++..
T Consensus 246 ~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~ 289 (524)
T PF05977_consen 246 RDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLL 289 (524)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHH
Confidence 4 588899999999999999999999999999999988776543
No 99
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.73 E-value=3.6e-16 Score=143.87 Aligned_cols=138 Identities=15% Similarity=0.216 Sum_probs=118.2
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhhhcccccc
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTRQ-FGRKLSMFFGGILFLAGALLNGFAQ-AIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~ 151 (355)
++|++..+.+++.+.+........+++|+++|| +|||++++++.++.+++..++++++ +.+.+.++|+++|++.|...
T Consensus 51 ~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~ 130 (500)
T PRK09584 51 QLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFK 130 (500)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhccc
Confidence 349999999999888776766777899999999 5999999999999999999888874 56677789999999999999
Q ss_pred cchhhhhhhcCCCCc--ccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHH
Q 041698 152 QSVPLYLSEMAPYRF--RGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALI 214 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~ 214 (355)
+...+++.|++|+++ |..+.++++.+.++|..++|.+++++.+ +.|||+.|.+.++..++
T Consensus 131 ~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~---~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 131 ANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAA---KYGWSVAFALSVVGMLI 192 (500)
T ss_pred CCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHH---hhCHHHHHHHHHHHHHH
Confidence 999999999998654 4567889999999999999999999987 57899999987754443
No 100
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.67 E-value=8.6e-16 Score=140.23 Aligned_cols=258 Identities=12% Similarity=-0.027 Sum_probs=160.8
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhc-----hhHHHHHHHHHHH-HHHHHHHHhhHH-HHHHHHHHHhhhcc
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQFG-----RKLSMFFGGILFL-AGALLNGFAQAI-WMLIVGRLLLGFGI 147 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-----rr~~l~~~~~~~~-~~~~~~~~~~~~-~~l~~~r~l~G~~~ 147 (355)
+|+|.++++...+...+...+-.+ +|+++||++ ||+.++++.++.. ++....+..++. ....+..++.+++.
T Consensus 56 lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 134 (468)
T TIGR00788 56 LGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAK 134 (468)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 399999999999999999999666 999999997 7788888877763 333333333454 34444889999999
Q ss_pred cccccchhhhhhhcCCCCcccch---hhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccC
Q 041698 148 GFANQSVPLYLSEMAPYRFRGAL---NIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPD 224 (355)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~r~~~---~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (355)
+...++..++..|..+ +++... .+......++|.++++.+++.+.+ ..+|+..|++.++..++..+..++++|
T Consensus 135 a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~---~~~~~~~f~~~a~l~ll~~~~~~~~~E 210 (468)
T TIGR00788 135 ALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD---KTLTRILFLITAALLLLQLFVSNLSKE 210 (468)
T ss_pred HHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH---hcCcchHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999998 544443 334444456899999999999887 568999999888877766555677788
Q ss_pred ChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHh
Q 041698 225 TPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMF 304 (355)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (355)
++.....+.+ ++.. ... .... ....+..++........++++..++.+...++.+ ..... .....
T Consensus 211 ~~~~~~~~~~-~~~~-----~~~---~~~~----~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~-~~~~~-~~~~~ 275 (468)
T TIGR00788 211 RRAFVRPRIG-TYLE-----MNM---ALLT----LGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSY-ANLPG-ASGSV 275 (468)
T ss_pred cccccccccc-ccch-----hhh---hhhh----hhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH-hhcCC-CCcee
Confidence 6410000000 0000 000 0000 0000000000011222233322222122222201 11111 11111
Q ss_pred cHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 305 YAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 305 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
+. +..+..|+++...|....+.+++.+++..+.+++.+|++.|+++.+
T Consensus 276 f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~ 323 (468)
T TIGR00788 276 FC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGV 323 (468)
T ss_pred EE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 11 2224589999999999999999999999999999999998887654
No 101
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.66 E-value=3.8e-15 Score=134.12 Aligned_cols=151 Identities=17% Similarity=0.221 Sum_probs=116.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhh----hhchhHHHHHH-HHHHHHHHHHHHHhhHHH----------------
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTR----QFGRKLSMFFG-GILFLAGALLNGFAQAIW---------------- 134 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~~~~~~---------------- 134 (355)
|.+..+.+++..+..+...+.+++.|+++| |+||||.++++ ....+++.++.+++++.+
T Consensus 35 g~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i 114 (477)
T TIGR01301 35 GIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAI 114 (477)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHH
Confidence 889999999999999999999999999999 59999998875 555666667777766542
Q ss_pred -HHHHHHHHhhhcccccccchhhhhhhcCCCCcc--cchhhHHHHHHHHHHHHHHHHHHHhh--cCC--------C--cc
Q 041698 135 -MLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFR--GALNIGFQLSITVGILIANVLNYFFN--KIH--------G--GW 199 (355)
Q Consensus 135 -~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~i~~~~~--~~~--------~--~~ 199 (355)
.++++-.+..++.....++..+++.|..|+++| +.+.++.....++|.++++.++++.. +.. + ..
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~ 194 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCA 194 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccc
Confidence 233333444557777888889999999998876 57899999999999999999998752 110 0 12
Q ss_pred chHHHHhhhHHHHHHHHHH-hccccCCh
Q 041698 200 GWRLSLGGAMVPALIITVG-SMILPDTP 226 (355)
Q Consensus 200 ~w~~~~~~~~~~~~~~~~~-~~~~~e~~ 226 (355)
+.|..|++.++..++..+. .+.++|.|
T Consensus 195 ~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 195 NLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 6788999887776665544 46678876
No 102
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.65 E-value=7.9e-16 Score=117.00 Aligned_cols=136 Identities=25% Similarity=0.368 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCC
Q 041698 86 TSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYR 165 (355)
Q Consensus 86 ~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~ 165 (355)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34567888999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc-cccC
Q 041698 166 FRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM-ILPD 224 (355)
Q Consensus 166 ~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~e 224 (355)
+|++..++......+|..+++.+.+.+.+ ..+|++.+++.+...++..+..+ ..||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQ---FLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhc---ccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999886 56799999887777666555443 3454
No 103
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.65 E-value=5.1e-15 Score=127.62 Aligned_cols=283 Identities=11% Similarity=0.106 Sum_probs=191.4
Q ss_pred CCCChhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHH
Q 041698 17 GNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLS 96 (355)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~ 96 (355)
.|..+++|.+++++++-.+.+++.--.++++ ..+.+.+. + +.+..-|+..+|.+.+...
T Consensus 37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i---~n~~~~~Y-----------------g-s~~~~~wlsmIym~v~vp~ 95 (480)
T KOG2563|consen 37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPI---NNYVNSFY-----------------G-SSSAADWLSMIYMVVSVPF 95 (480)
T ss_pred cccchhHhHHHHHHHHHHhcCcchheeehhH---HHHHHHHh-----------------c-chHHHHHHHHHHHHHHHHH
Confidence 4566677877777777667666655444433 34555543 6 7788889999999999999
Q ss_pred HHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh------hHHH--HHHHHHHHhhhcccccccchhhhhhhcCCCCccc
Q 041698 97 SLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA------QAIW--MLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRG 168 (355)
Q Consensus 97 ~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~--~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~ 168 (355)
.+.+-|+.|++|-|...+++..+.++++.+-..+ +.++ ..+.+..+.+.++-.+...-..+..-|++++||.
T Consensus 96 gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra 175 (480)
T KOG2563|consen 96 GFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRA 175 (480)
T ss_pred hhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhh
Confidence 9999999999999999999999999999887765 3455 7778999999988877777778888999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhcCC---CccchHH--HHhhhHHHHHHHHHH-hccccCChhHHHhcCChHHHHHHH
Q 041698 169 ALNIGFQLSITVGILIANVLNYFFNKIH---GGWGWRL--SLGGAMVPALIITVG-SMILPDTPNSIIERGRHEEAREEL 242 (355)
Q Consensus 169 ~~~~~~~~~~~~G~~~~~~i~~~~~~~~---~~~~w~~--~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~ 242 (355)
.+..+-..+..+|.+++.++...+.... ++..|.. .|+....++.+.++. .+..++.|+.... .+
T Consensus 176 ~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps-----~s---- 246 (480)
T KOG2563|consen 176 IATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPS-----AS---- 246 (480)
T ss_pred hhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc-----hh----
Confidence 9999999999999999998888876544 2345654 354444443333322 3334443321000 00
Q ss_pred HHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHH
Q 041698 243 RKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLM 322 (355)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 322 (355)
+..+.+..-.++.++.++.. + +....++.......++.....+...+...|++...+|.
T Consensus 247 -----------------~~~~~~~~f~~si~~~~~n~---~-F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ 305 (480)
T KOG2563|consen 247 -----------------QAALQDASFPKSIKSCFKNR---Q-FIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGY 305 (480)
T ss_pred -----------------HhhhhcCcHHHHHHHHHcCc---c-HHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccch
Confidence 00000011122233333332 2 33333333333333344444444334456787788999
Q ss_pred HHHHHHHHHHHHhhhhhheecccCCccc
Q 041698 323 SAVITGIVNVVATMVSIYGVDKWGRRFL 350 (355)
Q Consensus 323 ~~~~~~~~~~~~~~~~g~l~d~~g~r~~ 350 (355)
......++++++..+.|.+.||.++-+.
T Consensus 306 ig~l~iv~Gmlga~~~gii~Dktk~fk~ 333 (480)
T KOG2563|consen 306 IGALMIVAGMLGALASGIIADKTKKFKL 333 (480)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 9999999999999999999999876443
No 104
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.64 E-value=4.9e-15 Score=131.72 Aligned_cols=244 Identities=16% Similarity=0.164 Sum_probs=162.2
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhc-hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFG-RKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
|+|..|+|.+.+...+...++++++|.++||.+ +||.+.+..++.++........++++.+++..++..+...+..|..
T Consensus 33 G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~ 112 (400)
T PF03825_consen 33 GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLS 112 (400)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHH
Confidence 899999999999999999999999999999986 6788888888888877777788899988888888888888888888
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHH-HHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcC
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVL-NYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERG 233 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 233 (355)
.++..+... +++.-.+-.....++|.+++... +..+....+..+....+++.+...++.....+.+|+.|.....+.
T Consensus 113 dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~~ 190 (400)
T PF03825_consen 113 DSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPKRSAKE 190 (400)
T ss_pred HHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCccccccCC
Confidence 888887765 33444555555556665555432 222222111112234555555555444444556787762100000
Q ss_pred ChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhc
Q 041698 234 RHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTI 313 (355)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (355)
+ .++....+..+++|++.. ...... .+...........+.+.++++.
T Consensus 191 ~-----------------------------~~~~~~~~~~~llk~~~~---~~Fll~-~~l~~~~~~~~~~f~~~yl~~~ 237 (400)
T PF03825_consen 191 S-----------------------------VKKLLGLDALKLLKNPRF---LVFLLA-AFLIGISHAAYYTFFSIYLQEL 237 (400)
T ss_pred C-----------------------------cccccchHHHHHhcCccH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHc
Confidence 0 000001112234444332 222222 2233334556677778888887
Q ss_pred C-CCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 314 G-FGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 314 g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
| .+....+...++..++.++.-...+++.+|+|.|+++.++
T Consensus 238 gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a 279 (400)
T PF03825_consen 238 GGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLA 279 (400)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7 7778888888888999999999999999999999887654
No 105
>PRK09669 putative symporter YagG; Provisional
Probab=99.63 E-value=1.7e-15 Score=138.11 Aligned_cols=242 Identities=13% Similarity=0.028 Sum_probs=149.0
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhh----hchh-HHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHh
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQ----FGRK-LSMFFGGILFLAGALLNGFAQ------AIWMLIVGRLLL 143 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~------~~~~l~~~r~l~ 143 (355)
+|++..++|.+.++.-+..++..|+.|+++|| +||| +.++++.+..+++.++....+ ..+.+++..++.
T Consensus 40 ~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~ 119 (444)
T PRK09669 40 FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILL 119 (444)
T ss_pred cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 39999999999999999999999999999998 7874 556677777777665544433 245666667777
Q ss_pred hhcccccccchhhhhhhcC-CCCcccchhhHHHHHHHHHHHHHHHHHHHhhcC----CCccchHHHHhhhHHHHHHHHHH
Q 041698 144 GFGIGFANQSVPLYLSEMA-PYRFRGALNIGFQLSITVGILIANVLNYFFNKI----HGGWGWRLSLGGAMVPALIITVG 218 (355)
Q Consensus 144 G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~----~~~~~w~~~~~~~~~~~~~~~~~ 218 (355)
+.+......+..++..|+. ++++|.+..+....+..+|..+++.+...+... ....+|+..+.+.+++.++..+.
T Consensus 120 ~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~ 199 (444)
T PRK09669 120 SLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC 199 (444)
T ss_pred HHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 7777777777888999988 458899888888888888877777654443321 11357888888777776555443
Q ss_pred -hccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcc
Q 041698 219 -SMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFT 297 (355)
Q Consensus 219 -~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (355)
.+..+|.++. .+ + ++.+.++..+++++++..+......++.....
T Consensus 200 ~~~~~~e~~~~----~~--~--------------------------~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~-- 245 (444)
T PRK09669 200 CFFMTKERYTP----EV--D--------------------------NSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAV-- 245 (444)
T ss_pred HhCCeEEecCC----CC--c--------------------------CCCCHHHHHHHHhCCchHHHHHHHHHHHHHHH--
Confidence 3445554210 00 0 00001122333444333222222212111111
Q ss_pred cccchHhcHHHHHHhcCCC-CcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 298 GINVIMFYAPVLFNTIGFG-SDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.......+++.+. .++ ++..+.......+..+++.++.++++||+|+|+.+..
T Consensus 246 --~~~~~~~~y~~~~-~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~ 299 (444)
T PRK09669 246 --VTRGGATLYYVNY-VLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKW 299 (444)
T ss_pred --HHHhhhhheeeee-ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 1111222222222 222 2333445555567788888999999999999987653
No 106
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.62 E-value=4.8e-15 Score=134.49 Aligned_cols=244 Identities=14% Similarity=0.207 Sum_probs=168.4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhh----hhchhHH-HHHHHHHHHHHHHHHHHh-h-------HHHHHHHHHHH
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTR----QFGRKLS-MFFGGILFLAGALLNGFA-Q-------AIWMLIVGRLL 142 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d----r~Grr~~-l~~~~~~~~~~~~~~~~~-~-------~~~~l~~~r~l 142 (355)
|++....+.+..+.-+..++..|+.|.++| |+||||. ++++.+..+++.++.... + ....+.+..++
T Consensus 33 gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l 112 (428)
T PF13347_consen 33 GLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYIL 112 (428)
T ss_pred CCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999 8997655 456778888777766655 3 23445777777
Q ss_pred hhhcccccccchhhhhhhcCC-CCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC---c-cchHHHHhhhHHHHHHHHH
Q 041698 143 LGFGIGFANQSVPLYLSEMAP-YRFRGALNIGFQLSITVGILIANVLNYFFNKIHG---G-WGWRLSLGGAMVPALIITV 217 (355)
Q Consensus 143 ~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~---~-~~w~~~~~~~~~~~~~~~~ 217 (355)
..++......+..++..|..+ +++|.+..+.-..+..+|.++...+...+.+..+ . .+|++...+.+++.++..+
T Consensus 113 ~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~ 192 (428)
T PF13347_consen 113 FDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFL 192 (428)
T ss_pred HHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhh
Confidence 788999999999999999997 5789999999999888988766666666654322 1 2799999888888776555
Q ss_pred Hh-ccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHc
Q 041698 218 GS-MILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQF 296 (355)
Q Consensus 218 ~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (355)
.. +..+|+++. . ++++++.+-++.++++++.+... ......+...
T Consensus 193 i~~~~~ke~~~~------~------------------------~~~~~~~~~~~~~~~~~~nr~~~----~l~~~~~~~~ 238 (428)
T PF13347_consen 193 ITFFFVKERSVE------V------------------------TEQEKKISLRDSLRSLFRNRPFR----ILLLAFFLQW 238 (428)
T ss_pred hhhheeeecccc------c------------------------cccccccccccchhhhcccchHH----HHHHHHHHHH
Confidence 44 556772110 0 00011111233344444433222 2222233333
Q ss_pred ccccchHhcHHHHHHh-cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 297 TGINVIMFYAPVLFNT-IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 297 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
..........+++.+. .|.+ ...+.......++.+++.++.++++||+|+|+.+..+
T Consensus 239 ~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~ 296 (428)
T PF13347_consen 239 LAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIG 296 (428)
T ss_pred hhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhh
Confidence 3334444455555554 4444 5567777788999999999999999999999987654
No 107
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.62 E-value=2.2e-14 Score=129.76 Aligned_cols=136 Identities=17% Similarity=0.285 Sum_probs=113.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhhhcccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQF-GRKLSMFFGGILFLAGALLNGFAQ-AIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
|++..+.+.+.+.+.....++++++|+++||+ ||||+++++.++.+++.++.+..+ +...+.++..+.+++.|...+.
T Consensus 41 gls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~ 120 (493)
T PRK15462 41 KYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSN 120 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhccccccc
Confidence 89999999999999999999999999999999 999999999999999987776543 2233444444555666777788
Q ss_pred hhhhhhhcCCCC--cccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHH
Q 041698 154 VPLYLSEMAPYR--FRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALI 214 (355)
Q Consensus 154 ~~~~~~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~ 214 (355)
..++++|.+|++ +|..+.++.+.+.++|..++|.+.+++.+ +.||++.|.+.++..++
T Consensus 121 ~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~---~~Gw~~~F~iaaigm~l 180 (493)
T PRK15462 121 VSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE---EYSWAMGFGLAAVGMIA 180 (493)
T ss_pred HHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh---hhChHHHHHHHHHHHHH
Confidence 889999999875 68999999999999999999999999987 57899999876554333
No 108
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.61 E-value=2.6e-15 Score=137.80 Aligned_cols=246 Identities=12% Similarity=0.063 Sum_probs=153.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhh----hhch-hHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHhh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTR----QFGR-KLSMFFGGILFLAGALLNGFAQ------AIWMLIVGRLLLG 144 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~~~------~~~~l~~~r~l~G 144 (355)
|++...+|.+..+.-+.-++..|+.|+++| |+|| |+.++++.+..+++.++.-..+ .+..+++..++.+
T Consensus 38 Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~ 117 (473)
T PRK10429 38 GLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWG 117 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 6698 5666777777777765553322 2445666667778
Q ss_pred hcccccccchhhhhhhcC-CCCcccchhhHHHHHHHHHHHHHHHHHHHhhc----CCCccchHHHHhhhHHHHHHHHHH-
Q 041698 145 FGIGFANQSVPLYLSEMA-PYRFRGALNIGFQLSITVGILIANVLNYFFNK----IHGGWGWRLSLGGAMVPALIITVG- 218 (355)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~----~~~~~~w~~~~~~~~~~~~~~~~~- 218 (355)
++.....++..++..|.. ++++|.+..++-..+.++|..+.+.+...+.+ .....+|+....+.+++.++..+.
T Consensus 118 ~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~ 197 (473)
T PRK10429 118 MTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIIT 197 (473)
T ss_pred HHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999998 58999999888777777776665554443221 111236887777776665554433
Q ss_pred hccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccC-chhHHHHHHHHHHHHHcc
Q 041698 219 SMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKK-YRPHLTMAVLIPFFQQFT 297 (355)
Q Consensus 219 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 297 (355)
.+..+|.+... +.+ .+++++.++++.++.. ++++....+.. .+....
T Consensus 198 ~~~~~e~~~~~----~~~---------------------------~~~~~~~~~~~~~~~~~~n~~~~~ll~~-~~~~~~ 245 (473)
T PRK10429 198 LRNVHEVYSSD----NQV---------------------------SAEGSHLTLKDIVALIYKNDQLSCLLGM-ALAYNI 245 (473)
T ss_pred HcCceecCCcc----ccc---------------------------cccccCCCHHHHHHHHhcCHHHHHHHHH-HHHHHH
Confidence 34466653110 000 0000112233333211 12222222222 222222
Q ss_pred cccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 298 GINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.......+.+++.+....++...+.......++.+++.++.+++.||+|+|+.+.+
T Consensus 246 ~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~ 301 (473)
T PRK10429 246 ASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAG 301 (473)
T ss_pred HHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 22333334444444332334455666666778899999999999999999988653
No 109
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.59 E-value=6.7e-14 Score=125.60 Aligned_cols=145 Identities=16% Similarity=0.155 Sum_probs=121.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|++..+.+++.+...++..++.++.|+++||+|||+.+..+.+...+........++.+.+++.+++.+++.+...+...
T Consensus 248 ~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~ 327 (393)
T PRK15011 248 HLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGM 327 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999998888888889999999999999999988887766666555555677888888899998888777777777
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccC
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPD 224 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (355)
.+..|..|+ +|+++.++++....+|..+++.+++.+.+ ..+|+..|++.+++.++.++..++.||
T Consensus 328 ~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 328 LYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAE---IWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 888999875 58999999999999999999999999987 568999998888777776666666654
No 110
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.58 E-value=1.6e-14 Score=136.79 Aligned_cols=142 Identities=15% Similarity=0.006 Sum_probs=123.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhh
Q 041698 81 TLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSE 160 (355)
Q Consensus 81 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~ 160 (355)
...+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++++++.|++.++.++...++++|
T Consensus 596 ~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aE 675 (742)
T TIGR01299 596 MIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVE 675 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667789999999999999999999999999999999999999999888888899999999888889999999999
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCCh
Q 041698 161 MAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTP 226 (355)
Q Consensus 161 ~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~ 226 (355)
++|+++|++++++......+|.+++|.+++.+.. .+...+|++.+++.++..++.+++||+.
T Consensus 676 l~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~----~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 676 LYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG----ITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999988765 2345677777777666666666779875
No 111
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.56 E-value=7.4e-14 Score=126.04 Aligned_cols=149 Identities=13% Similarity=0.184 Sum_probs=125.2
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHhhhccccccc
Q 041698 77 YDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ----AIWMLIVGRLLLGFGIGFANQ 152 (355)
Q Consensus 77 ~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~ 152 (355)
++..+.+...++..++..++.++.|+++||+|||+++.++.++.+++..+..... +++.+++.+++.|++.+...+
T Consensus 248 ~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~ 327 (418)
T TIGR00889 248 FVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI 327 (418)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3457789999999999999999999999999999999999999988876666532 346677889999999998888
Q ss_pred chhhhhhhcCCCCcccchhhHHH-HHHHHHHHHHHHHHHHhhcCCCc---cchHHHHhhhHHHHHHHHHH-hccccCC
Q 041698 153 SVPLYLSEMAPYRFRGALNIGFQ-LSITVGILIANVLNYFFNKIHGG---WGWRLSLGGAMVPALIITVG-SMILPDT 225 (355)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~i~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~-~~~~~e~ 225 (355)
....++.|++|+++|++..++.+ ...++|..++|.+++.+.+..+. .||+..|.+.+++.++..+. .++++|+
T Consensus 328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 98999999999999999999997 67899999999999999875432 57999998887776665544 4556766
No 112
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.56 E-value=1.5e-13 Score=121.77 Aligned_cols=185 Identities=15% Similarity=0.217 Sum_probs=141.5
Q ss_pred HHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhh
Q 041698 24 LVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRV 103 (355)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l 103 (355)
|..+.++.+..++.+.+.+++.+. +-+|.++. |.+-+.+..|++.++..++.+++++.+|++
T Consensus 33 wrsi~l~~~~sfl~~v~~sI~~~s--~wpYl~~l----------------D~~A~~~ffG~viaa~slg~~i~~liF~~W 94 (488)
T KOG2325|consen 33 WRSIYLALLNSFLVAVQFSIYLTS--MWPYLQKL----------------DPTATATFFGLVIAASSLGHAIFSLIFGIW 94 (488)
T ss_pred hHhHHHHHHHHHHHhhhheEEEee--cchhhhhc----------------CCCCCcchhhHHHHHHHHHHHhcchhhccc
Confidence 334455555567777777777666 66777664 226688999999999999999999999999
Q ss_pred hhhhch-hHHHHHHHHHHHHHHHHH-HHh---h-HHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHH
Q 041698 104 TRQFGR-KLSMFFGGILFLAGALLN-GFA---Q-AIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLS 177 (355)
Q Consensus 104 ~dr~Gr-r~~l~~~~~~~~~~~~~~-~~~---~-~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 177 (355)
+.|.+. |+.++.+.++.++++++. +.. + .-+.++++|++.|+|.| .....-+|+++....++|.++++....+
T Consensus 95 s~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~ 173 (488)
T KOG2325|consen 95 SNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGG 173 (488)
T ss_pred ccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhH
Confidence 999986 899999999999999888 332 3 67899999999999976 4566789999998899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCC-------cc---chHHHHhhhHHHHHHHHHH-hccccCChh
Q 041698 178 ITVGILIANVLNYFFNKIHG-------GW---GWRLSLGGAMVPALIITVG-SMILPDTPN 227 (355)
Q Consensus 178 ~~~G~~~~~~i~~~~~~~~~-------~~---~w~~~~~~~~~~~~~~~~~-~~~~~e~~~ 227 (355)
..+|.++||.+...+..... +. -+..+-|+.++..++.++. .+++.|.++
T Consensus 174 ~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 174 FVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 99999999998887764321 01 1234445555555554444 355677764
No 113
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=99.55 E-value=6.4e-16 Score=141.87 Aligned_cols=268 Identities=14% Similarity=0.179 Sum_probs=3.0
Q ss_pred ccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh-------------------
Q 041698 71 TNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ------------------- 131 (355)
Q Consensus 71 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~------------------- 131 (355)
+++.|+++..+.|++.+.+-++..+..++..++.+|..|-|.+-+|.++.+++++++++-+
T Consensus 29 iErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~ 108 (539)
T PF03137_consen 29 IERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSS 108 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccc
Confidence 3566699999999999999999999999999999998888999999999999998876411
Q ss_pred -------------------------------HHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHH
Q 041698 132 -------------------------------AIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITV 180 (355)
Q Consensus 132 -------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 180 (355)
-+..+++++++.|+|....++...+|+-|..++++-+..+|+..+...+
T Consensus 109 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~l 188 (539)
T PF03137_consen 109 ISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSIL 188 (539)
T ss_dssp -------------------------------------------SSS----------------------------------
T ss_pred cccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhc
Confidence 1367889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCC---------------cc----chHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHH
Q 041698 181 GILIANVLNYFFNKIHG---------------GW----GWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREE 241 (355)
Q Consensus 181 G~~~~~~i~~~~~~~~~---------------~~----~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 241 (355)
|.++|-++++.+.+... +. .|..-|.+.+...++..+.++++|++.....+..+.++..
T Consensus 189 GPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~-- 266 (539)
T PF03137_consen 189 GPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKESS-- 266 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhhh--
Confidence 99999999988775310 11 2555555556555555555666665532210000000000
Q ss_pred HHHHhCCCccHHHHHHHHHHHHHhhccccchhhhh---ccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH-hcCCCC
Q 041698 242 LRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLL---QKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN-TIGFGS 317 (355)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ 317 (355)
+...++..+++ . .+++..+......++++ ++....+.+....+...........+..+.|.+++ +++.++
T Consensus 267 --~~~~~~~~~~~---~-~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sa 340 (539)
T PF03137_consen 267 --ERKEEDSDKDS---F-KDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSA 340 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --hcchhhhhhhc---c-cccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 00000000000 0 00000000111222222 23333445666666666666667777778887775 589998
Q ss_pred cHHHHHHHHHHH-HHHHHhhhhhheecccC
Q 041698 318 DASLMSAVITGI-VNVVATMVSIYGVDKWG 346 (355)
Q Consensus 318 ~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g 346 (355)
.++..+.....+ +..+|.+++|++.+|++
T Consensus 341 s~A~~l~G~v~ip~~~~G~llGG~ivkk~k 370 (539)
T PF03137_consen 341 SQASLLTGIVSIPGAALGILLGGYIVKKFK 370 (539)
T ss_dssp ------------------------------
T ss_pred HHHHHHHhhhhcchhheehheEEEEEEEec
Confidence 888887766655 67788999999999874
No 114
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.54 E-value=1e-13 Score=125.62 Aligned_cols=148 Identities=17% Similarity=0.203 Sum_probs=126.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
+.+..+.+.+.++..++..++.++.|+++||+|||+.+.++.++.+++.++.+++++.+.+++.+++.|++.+...+...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677889999999999999999999999999999999999999999888888999999999999999998888878888
Q ss_pred hhhhhcCCCCcccchhhH-HHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCCh
Q 041698 156 LYLSEMAPYRFRGALNIG-FQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTP 226 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~ 226 (355)
.++.|.+|++.|+...+. ++....+|.++++.+.+.+.+ ..||+..|.+.+++.++..+.. +.+++++
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~---~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD---SIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH---hhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 899999999988877655 677788999999999999988 5689999998777766544443 3444443
No 115
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.53 E-value=1.9e-13 Score=120.49 Aligned_cols=143 Identities=24% Similarity=0.327 Sum_probs=133.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKL-SMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
|.+..+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.+...+.++.+.+.+..++.|++.+...+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 286 (352)
T cd06174 207 GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhH
Confidence 778999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcc
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMI 221 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 221 (355)
..++.|..|+++|++.+++......+|..+++.+.+.+.+ ..+|+..+.+.+++.++..+..++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~---~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD---TGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCcchHHHHHHHHHHHHHHHhee
Confidence 9999999999999999999999999999999999999987 568999999888887776665544
No 116
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.52 E-value=2.2e-13 Score=122.67 Aligned_cols=142 Identities=18% Similarity=0.219 Sum_probs=122.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhh
Q 041698 81 TLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSE 160 (355)
Q Consensus 81 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~ 160 (355)
+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.......|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45666778889999999999999999999999999988888888888888888888899999999999888888888889
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCC
Q 041698 161 MAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDT 225 (355)
Q Consensus 161 ~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~ 225 (355)
..|+++|+++.++++....+|..+++.+.+.+.+ ..+|+..|++.++..++..+..++++++
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS---WFGYPSIFLAAALAALLGLALTWLLYRR 391 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999998887 5689999998887777666555555443
No 117
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.2e-14 Score=117.68 Aligned_cols=257 Identities=14% Similarity=0.113 Sum_probs=161.2
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHhhhcc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQ-FGRKLSMFFGGILFLAGALLNG---FAQAIWMLIVGRLLLGFGI 147 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~ 147 (355)
+.+.+++.++..++.+.|.....+-++++|++.|| +|.|..-++-+....++.++++ ..+.+|+++++|++-|+|.
T Consensus 71 k~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGg 150 (459)
T KOG4686|consen 71 KLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGG 150 (459)
T ss_pred hcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCc
Confidence 55568888999999999999999999999999997 6888777777777778887776 4689999999999999998
Q ss_pred cccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh---ccccC
Q 041698 148 GFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS---MILPD 224 (355)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~---~~~~e 224 (355)
-....+-..|..-|+..|+.+.++|+......+|..+--.+..++.+..+ -++-...-+.+.+... ..+..
T Consensus 151 ESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~------~~~~~~ghT~LG~~l~~~~~tc~~ 224 (459)
T KOG4686|consen 151 ESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG------RMFPGVGHTLLGLWLCFEVKTCKQ 224 (459)
T ss_pred hhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH------HhcccchHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999998776666555544111 0110000011100000 00000
Q ss_pred ChhHHHhcCChH-HHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchH
Q 041698 225 TPNSIIERGRHE-EAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIM 303 (355)
Q Consensus 225 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (355)
+--.....+-.+ ++++.+. .++....+.....+. ....++.+....++.......+..+.
T Consensus 225 slical~lg~~D~rAerilh-----------------~e~g~~Ge~pkLtdv--~~f~ppfw~~~iicv~yyva~fPFi~ 285 (459)
T KOG4686|consen 225 SLICALSLGLSDDRAERILH-----------------LEEGFLGEEPKLTDV--NTFYPPFWVLVIICVLYYVAWFPFIT 285 (459)
T ss_pred HHHHHHHhhhhhhHHHHHHh-----------------hhcCcccCCcccccc--cccCccHHHHHHHHHHHHHHHHHHhh
Confidence 000000011111 1111111 011000001111111 11223334433333332222222222
Q ss_pred hcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 304 FYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 304 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.-...+.+++|+|+..++.+.+.......+...+.|.++||+|++...+.
T Consensus 286 lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~ 335 (459)
T KOG4686|consen 286 LGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVA 335 (459)
T ss_pred hhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHH
Confidence 22234446699999999999999999999999999999999999876543
No 118
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.51 E-value=1.4e-13 Score=118.87 Aligned_cols=191 Identities=9% Similarity=-0.016 Sum_probs=136.2
Q ss_pred HHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC----------
Q 041698 128 GFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHG---------- 197 (355)
Q Consensus 128 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~---------- 197 (355)
+..++|+.++++-++.|.|.+..++..+.++++..+++++.+.+++.+..+++|..++|++++.+.....
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 3567899999999999999999999999999999999999999999999999999999999998873210
Q ss_pred ---ccchHHHHhhhHHHHHHHHHHhcc--ccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccch
Q 041698 198 ---GWGWRLSLGGAMVPALIITVGSMI--LPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPW 272 (355)
Q Consensus 198 ---~~~w~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (355)
..+|+++|++.+.+.++..+.+.+ +||.++ ++.++. .+ ++ ....
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~~-----------------------~~-~~--~~~~ 133 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVARV-----------------------SS-GD--TTQK 133 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----cccccc-----------------------cc-cc--ccch
Confidence 137999998666664444444333 354321 000000 00 00 0000
Q ss_pred hhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHh---cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcc
Q 041698 273 KNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNT---IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRF 349 (355)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~ 349 (355)
+..++ ++ .++...+..++..........|.+.++++ +|+++.+++...+....+.++|+++.+++.||+++|+
T Consensus 134 ~~~~~---~~-~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~ 209 (310)
T TIGR01272 134 TSAFQ---FT-HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR 209 (310)
T ss_pred hhHHh---hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 11121 12 23334444555555566777788877754 5899999999999999999999999999999999888
Q ss_pred cccc
Q 041698 350 LFLE 353 (355)
Q Consensus 350 ~~~~ 353 (355)
.+.+
T Consensus 210 ~l~~ 213 (310)
T TIGR01272 210 YLAF 213 (310)
T ss_pred HHHH
Confidence 7643
No 119
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.50 E-value=2.1e-13 Score=121.53 Aligned_cols=137 Identities=12% Similarity=-0.014 Sum_probs=119.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHhhhcccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAI--WMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~ 153 (355)
+.+..+.+.+.+.+.++..++.++.|+++||+|||+.+.++.++.+++.+...+.++. ..+.+..++.|++.+...+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 315 (377)
T TIGR00890 236 GLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISL 315 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhc
Confidence 7788889999999999999999999999999999999999999988888877776543 33456678888888888888
Q ss_pred hhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHH
Q 041698 154 VPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALII 215 (355)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~ 215 (355)
...++.|.+|+++|++..++......+|..++|.+.+.+.+ +.||++.|.+.+++.++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 316 FPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT---EIGFEYTFIVTGAFALTS 374 (377)
T ss_pred cHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh---hhchhhHHHHHHHHHHHh
Confidence 88899999999999999999999999999999999999887 568999998877665543
No 120
>PRK11462 putative transporter; Provisional
Probab=99.50 E-value=4.8e-13 Score=122.13 Aligned_cols=240 Identities=11% Similarity=0.076 Sum_probs=149.2
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhh----hchhH-HHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHhh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQ----FGRKL-SMFFGGILFLAGALLNGFAQA------IWMLIVGRLLLG 144 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G 144 (355)
|++...+|.+..+.-+.-++.-|+.|.++|| +|||| .++++.+..+++.+++-..++ ...+.+.-++..
T Consensus 41 Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~ 120 (460)
T PRK11462 41 GIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLT 120 (460)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996 68764 455666777776655443332 445666667778
Q ss_pred hcccccccchhhhhhhcCC-CCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC----ccchHHHHhhhHHHHHHHHHHh
Q 041698 145 FGIGFANQSVPLYLSEMAP-YRFRGALNIGFQLSITVGILIANVLNYFFNKIHG----GWGWRLSLGGAMVPALIITVGS 219 (355)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~----~~~w~~~~~~~~~~~~~~~~~~ 219 (355)
++......+..++..|..+ +++|++..++...+..+|..+++.+...+.+..+ ..+|+....+.+++.++.....
T Consensus 121 ~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~ 200 (460)
T PRK11462 121 LLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFC 200 (460)
T ss_pred HHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 8888888888899999987 7889999999999999988888776554433211 2468877777666655544333
Q ss_pred -ccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHccc
Q 041698 220 -MILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTG 298 (355)
Q Consensus 220 -~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (355)
...+|.++. +.+ +.+.++..+..++.+..+......++........
T Consensus 201 ~~~~kE~~~~-----~~~----------------------------~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~ 247 (460)
T PRK11462 201 FFTTKERVEA-----PPT----------------------------TTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVR 247 (460)
T ss_pred HhcceeccCC-----Ccc----------------------------CCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 334554310 000 0000111223332222111111111211111111
Q ss_pred ccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 299 INVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 299 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
.....++..+. .|. +...+.......++.+++.+++++++||+++|+.+.
T Consensus 248 ~~~~~y~~~y~---~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~ 297 (460)
T PRK11462 248 GGAMMYYVTWI---LGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFW 297 (460)
T ss_pred HhHhhhhhhhh---cCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 12222222222 222 233345666778888999999999999999987754
No 121
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.50 E-value=8.4e-13 Score=117.76 Aligned_cols=145 Identities=17% Similarity=0.227 Sum_probs=122.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+..+.+++.+.......++.++.|++.||+|||+.+.++.+...+......+.++.+.+.+.+++.|++.+...+...
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 310 (375)
T TIGR00899 231 GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGM 310 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999988888778888999999999999999999888777666666666778888888899999999888888888
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccC
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPD 224 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (355)
.++.|..|+ +++++.+++.....+|..++|.+++.+.+ ..+|+..|++.++..++..+...+++|
T Consensus 311 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 311 LYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAE---RWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hccchhHHHHHHHHHHHHHHHHheecC
Confidence 889998875 56799999999999999999999999887 567999999888777766666555543
No 122
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.50 E-value=2e-13 Score=125.91 Aligned_cols=262 Identities=15% Similarity=0.166 Sum_probs=186.5
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh--------------------
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ-------------------- 131 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------------------- 131 (355)
.+.++++.++.|++.+.+-++..+...+..+..-|.-|-+.+-+|.++.+++++++++-+
T Consensus 124 ErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~ 203 (735)
T KOG3626|consen 124 ERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENP 203 (735)
T ss_pred hhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCC
Confidence 555699999999999999999999999999999999999999999999999999987632
Q ss_pred -----------------------------H--HH-HHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHH
Q 041698 132 -----------------------------A--IW-MLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSIT 179 (355)
Q Consensus 132 -----------------------------~--~~-~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 179 (355)
+ ++ .++++.++.|+|....++...+|+-|...+++-+..+++......
T Consensus 204 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~ 283 (735)
T KOG3626|consen 204 SSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAI 283 (735)
T ss_pred ccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHH
Confidence 0 23 667889999999999999999999999999988999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCc------------c----chHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHH
Q 041698 180 VGILIANVLNYFFNKIHGG------------W----GWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELR 243 (355)
Q Consensus 180 ~G~~~~~~i~~~~~~~~~~------------~----~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 243 (355)
+|.++|-++++++.+.... . -|..-|++.+.+.++..+.++++|...+...++ +..+ ..+
T Consensus 284 lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~-~~~~---~~~ 359 (735)
T KOG3626|consen 284 LGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKR-KRAR---DLH 359 (735)
T ss_pred hhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcccccc-chhh---hhc
Confidence 9999999999998753211 1 256666677777777667777777654321111 0000 000
Q ss_pred HHhCCCccHHHHHHHHHHHHHhhccccchhhhh---ccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH-hcCCCCcH
Q 041698 244 KVRGVNDVEEEFNDLVAASEASRQVEHPWKNLL---QKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN-TIGFGSDA 319 (355)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~ 319 (355)
....+++ ..+......+..+++. ++....+++....+...+....+..+..|+|-+++ ++|.++..
T Consensus 360 ~~k~~~~----------~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~ 429 (735)
T KOG3626|consen 360 VLKTESG----------GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASL 429 (735)
T ss_pred ccccccc----------cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHH
Confidence 0000000 0000000011122222 22223345666666666777777788888887775 58999999
Q ss_pred HHHHHHHHHH-HHHHHhhhhhheecccCC
Q 041698 320 SLMSAVITGI-VNVVATMVSIYGVDKWGR 347 (355)
Q Consensus 320 ~~~~~~~~~~-~~~~~~~~~g~l~d~~g~ 347 (355)
+..++....+ +..+|.+++|++++|+.-
T Consensus 430 An~l~G~i~vp~~~~Gi~lGG~iikkfkl 458 (735)
T KOG3626|consen 430 ANILTGSIGVPAAAVGIFLGGLIIKKFKL 458 (735)
T ss_pred HHHHhhhhhhhhhhhhhhccceeeeeecc
Confidence 8888865554 467788999999998753
No 123
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.49 E-value=5.1e-13 Score=120.55 Aligned_cols=147 Identities=10% Similarity=0.055 Sum_probs=122.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+..++.|++.+...+...
T Consensus 251 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 330 (406)
T PRK11551 251 GLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLY 330 (406)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHH
Confidence 88999999999999999999999999999999999999887777777777777777888788888888988877888888
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccC
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPD 224 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (355)
++..|.+|+++|++..++......+|..++|.+.+.+.+.. .+|...++......++..+..+++.+
T Consensus 331 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 331 ALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG--RSTVGVIGASIPVILVAALAALLLVS 397 (406)
T ss_pred HHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC--CchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999987632 25666666665555554444444433
No 124
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.49 E-value=1.5e-14 Score=126.57 Aligned_cols=244 Identities=17% Similarity=0.176 Sum_probs=138.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHH--HHH-HHHHHh----hHH-HHHHHHHHHhhhcc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFL--AGA-LLNGFA----QAI-WMLIVGRLLLGFGI 147 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~--~~~-~~~~~~----~~~-~~l~~~r~l~G~~~ 147 (355)
|+|.+++|.+.++..+...+.+++.|.++||+|.||-+++...+.. .+. +...+. .|. ...+++-...|+..
T Consensus 39 GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f 118 (412)
T PF01306_consen 39 GLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVF 118 (412)
T ss_dssp ---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999997665554433322 222 222222 222 22333334445555
Q ss_pred cccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccc-cCCh
Q 041698 148 GFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMIL-PDTP 226 (355)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~e~~ 226 (355)
....++..++..++. ++.+.-.|-.....++|.+++..++|.+.+ .+-...|++....+++..++.++. |+.+
T Consensus 119 ~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~----i~p~~~fwi~s~~~~il~lll~~~~~~~~ 192 (412)
T PF01306_consen 119 NAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN----INPNIIFWIASAAAIILLLLLLLLKPDVP 192 (412)
T ss_dssp TTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHSS---SS
T ss_pred cccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee----eCccHHHHHHHHHHHHHHHHHHHcCCcCc
Confidence 555566666666654 334677778888899999999999998876 344667776665555544443333 3333
Q ss_pred hHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcH
Q 041698 227 NSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYA 306 (355)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (355)
+.....+.. ..++++.+.+++++..+.++.+.......... ..+..+-...
T Consensus 193 ~~~~~~~~~----------------------------~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~-~~Y~vfdqqf 243 (412)
T PF01306_consen 193 PQAEVADAL----------------------------GAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVA-AIYDVFDQQF 243 (412)
T ss_dssp SSS-SSTTS----------------------------SS------HHHHHHHTTSHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred hhhhhhccc----------------------------ccCCCCCcHHHHHHHhcchhHHHHHHHHHHHH-HHHHHHHHHH
Confidence 211000000 00111222333333333334333332222211 2223333233
Q ss_pred HHHHHh----cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 307 PVLFNT----IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 307 ~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
+.+... .+.+....|.+.+...+..++...+..++.+|+|.|+.++++
T Consensus 244 ~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Llla 295 (412)
T PF01306_consen 244 PIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLA 295 (412)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHH
Confidence 444433 333445678888889999999999999999999999887754
No 125
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.48 E-value=4.3e-12 Score=115.14 Aligned_cols=247 Identities=18% Similarity=0.203 Sum_probs=164.8
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHH-HHHHHHHHHHHHHHHHh--hHHHHHHHHHHHhhhcccccccchh
Q 041698 79 SETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSM-FFGGILFLAGALLNGFA--QAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 79 ~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l-~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
.+..++..++..+..++..|+.|.++|+-|+||.+ .+...+..+++....+. ++++...+..++.-++.+.......
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999999999999866555 55555556666666663 4455566666777778888888999
Q ss_pred hhhhhcCCCCcc--------------------------cchhhHHHHHHHHHHHHHHHHHHHhhcCCC-----ccchHHH
Q 041698 156 LYLSEMAPYRFR--------------------------GALNIGFQLSITVGILIANVLNYFFNKIHG-----GWGWRLS 204 (355)
Q Consensus 156 ~~~~~~~~~~~r--------------------------~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~-----~~~w~~~ 204 (355)
+++.|..+++++ ++..+.-.....+|.++.-++...+....+ ..+-|..
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~ 228 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA 228 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence 999999999888 999999999999998888777666543221 2345887
Q ss_pred HhhhHHHHHH-HHHHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhH
Q 041698 205 LGGAMVPALI-ITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPH 283 (355)
Q Consensus 205 ~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (355)
+.+.++.-++ .+..++++||.|+....+....-..... ++-..++++.. +.+.
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~-----------------------~~l~~t~k~~~---~~~~ 282 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGF-----------------------KRLWRTFKEIR---KLRQ 282 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHH-----------------------HHHHHHHHHHH---hChH
Confidence 8777777544 4445667888875210000000000000 00011222221 1222
Q ss_pred HHHHHHHHHHHHcccccchHhcHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCc--cccc
Q 041698 284 LTMAVLIPFFQQFTGINVIMFYAPVLF-NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRR--FLFL 352 (355)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r--~~~~ 352 (355)
...+++.++...-+.+.+......+. ++.|++..+.........+.+++|+++.+++.||+|.| +.++
T Consensus 283 -~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~ 353 (477)
T PF11700_consen 283 -LFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLL 353 (477)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence 33334444443344455555555555 47999999999999999999999999999999999988 5544
No 126
>PRK12382 putative transporter; Provisional
Probab=99.48 E-value=6.3e-13 Score=119.35 Aligned_cols=135 Identities=15% Similarity=0.207 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhc
Q 041698 82 LTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEM 161 (355)
Q Consensus 82 ~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~ 161 (355)
.++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..++.|++.+...+.....+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45666778888899999999999999999999999999988888888888888888999999999988888888888999
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh
Q 041698 162 APYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS 219 (355)
Q Consensus 162 ~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 219 (355)
+|+++|++..++++....+|..++|.+.+.+.+ +.||+..|.+.+...++..+..
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~---~~g~~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT---SFGYPSVFLAGAISAVLGIIVT 385 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987 5689999998887766655544
No 127
>PRK09848 glucuronide transporter; Provisional
Probab=99.45 E-value=8.8e-13 Score=120.51 Aligned_cols=242 Identities=10% Similarity=0.047 Sum_probs=135.8
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh----chhHHH-HHHHHHHHHHHHHH-HHh----h--HHHHHHHHHHH
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQF----GRKLSM-FFGGILFLAGALLN-GFA----Q--AIWMLIVGRLL 142 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~----Grr~~l-~~~~~~~~~~~~~~-~~~----~--~~~~l~~~r~l 142 (355)
+|++..++|.+.+...+..++..++.|+++||. ||||.. +++.+...+..++. ... + ..+.+.+..++
T Consensus 39 ~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (448)
T PRK09848 39 AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMG 118 (448)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHH
Confidence 389999999999999999999999999999996 777654 55555555444432 211 1 23334555567
Q ss_pred hhhcccccccchhhhhhhcCCC-CcccchhhHHHHH-----HHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHH
Q 041698 143 LGFGIGFANQSVPLYLSEMAPY-RFRGALNIGFQLS-----ITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIIT 216 (355)
Q Consensus 143 ~G~~~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~-----~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 216 (355)
.+++.+...++..++..+..+. ++|.+..+.-..+ ..++..++|.++....... ..+|.....+.+++.++..
T Consensus 119 ~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~-~~~~~~~~~~~~v~~~~~~ 197 (448)
T PRK09848 119 LGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEM-VSVYHFWTIVLAIAGMVLY 197 (448)
T ss_pred HHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-hhhHHHHHHHHHHHHHHHH
Confidence 7888888888777777776654 6787776655433 3455666676665432110 0122222222233322222
Q ss_pred -HHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHH
Q 041698 217 -VGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQ 295 (355)
Q Consensus 217 -~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (355)
+.....||++.. +. ++...+..++.+++++.... ..+..++.
T Consensus 198 ~~~~~~~~e~~~~---~~------------------------------~~~~~~~~~~~l~~n~~f~~----~~~~~~~~ 240 (448)
T PRK09848 198 FICFKSTRENVVR---IV------------------------------AQPSLKISLQTLKRNRPLFM----LCIGALCV 240 (448)
T ss_pred HHHHcCcEeccCC---Cc------------------------------cCCCHHHHHHHHhCCchHHH----HHHHHHHH
Confidence 223345554310 00 00000112334444333222 22212222
Q ss_pred cccccchHhcHHHHHHh-cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 296 FTGINVIMFYAPVLFNT-IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 296 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
...........+++.++ .|.++...+.......++.+++.++.+++.||+++|+.+.+|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g 300 (448)
T PRK09848 241 LISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIG 300 (448)
T ss_pred HHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 22222333345555543 566655555545544677888999999999999999877643
No 128
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.45 E-value=1e-11 Score=109.30 Aligned_cols=143 Identities=22% Similarity=0.337 Sum_probs=126.1
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHhhhcccccc
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQF-GRKLSMFFGGILFLAGALLNGFAQ--AIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~ 151 (355)
+|+|+++..-+.++|.--.=+...++|+++||+ |+|+++.++.++.++|.++.+.++ +...+.++-.+.++|.|..=
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 679999999999999888888999999999995 999999999999999999999884 78899999999999999999
Q ss_pred cchhhhhhhcCCCCc--ccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc
Q 041698 152 QSVPLYLSEMAPYRF--RGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
+...+++.|.+|+++ |-...++++++.++|++++|++.+++.+ +++|...|...++-....++.++
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~---~~g~~~gF~~aavGm~~gl~~f~ 203 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI---NYGWHVGFGLAAVGMIIGLVIFL 203 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH---hhCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998644 5778889999999999999999999998 68899999877665555444433
No 129
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.44 E-value=4e-12 Score=113.71 Aligned_cols=138 Identities=11% Similarity=0.039 Sum_probs=123.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+..+.+.+.+...++..++.++.+++.||+|+|+.+.++.+..++..+..+++++.+.+++.++++|+..+...+...
T Consensus 236 g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~ 315 (382)
T TIGR00902 236 GISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAM 315 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCcccchhhHHH-HHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH
Q 041698 156 LYLSEMAPYRFRGALNIGFQ-LSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG 218 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 218 (355)
.++.+. |+++|++..++++ ...++|..+++.++|.+.+ +.++ ..|+..+.++++.++.
T Consensus 316 ~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~---~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 316 RYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP---TLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccH-HHHHHHHHHHHHHHHH
Confidence 999998 8889999999876 5788999999999999998 4565 4566666665554443
No 130
>PRK03699 putative transporter; Provisional
Probab=99.43 E-value=3.7e-12 Score=114.44 Aligned_cols=144 Identities=17% Similarity=0.040 Sum_probs=119.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|+|..+.+.+.+.+.++..++.++.|+++||++||+.+.....+..+...+....++.+.+.+..++.|++.+..++...
T Consensus 237 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 316 (394)
T PRK03699 237 GMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTII 316 (394)
T ss_pred CCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999888877777766666777777777778889998888888888
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcccc
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILP 223 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 223 (355)
++..|..| +++++..+.......+|..++|.+.+.+.+ ..||+..+++.+++.++..+....++
T Consensus 317 ~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 317 TLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVA---HFGLQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred HHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHH---HhCchhhhhhhHHHHHHHHHHHHHHH
Confidence 88888775 446778888888899999999999999988 56799998887777666655444443
No 131
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.42 E-value=1.1e-12 Score=121.52 Aligned_cols=133 Identities=11% Similarity=-0.022 Sum_probs=106.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHhhhcccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA--QAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
|++..+.+++.+...++..++.++.|+++||+|||+++..+.++..+..+..... .+.+.+.+..++.+.......+.
T Consensus 307 g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (496)
T PRK03893 307 GYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGL 386 (496)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchh
Confidence 8899999999999999999999999999999999999988877766665444332 34444445555544433344567
Q ss_pred hhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHH
Q 041698 154 VPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVP 211 (355)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~ 211 (355)
...++.|.+|+++|++.+++......+|..++|.+++.+.+ ..+|+..+...+..
T Consensus 387 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~---~~g~~~~~~~~~~~ 441 (496)
T PRK03893 387 LPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQ---RLDLGTALASLSFS 441 (496)
T ss_pred hHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhc---cCChHHHHHHHHHH
Confidence 77889999999999999999999999999999999999988 56788777654443
No 132
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.42 E-value=4.1e-12 Score=114.70 Aligned_cols=137 Identities=20% Similarity=0.118 Sum_probs=120.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhh
Q 041698 81 TLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSE 160 (355)
Q Consensus 81 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~ 160 (355)
..+.+.++..++..++.+..|+++||+|||+.+..+..+..++.+...+.++.+.+++.+++.|++.+...+.....+.+
T Consensus 259 ~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 338 (408)
T PRK09874 259 ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVY 338 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 34666677788889999999999999999999999998888888877778888889999999999999999999999999
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc
Q 041698 161 MAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 161 ~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
..|+++|++.+++......+|..++|.+++.+.+ ..+|+..|++.++..++..+..+
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~---~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA---NYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred hCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh---hcchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987 56899999988887776655543
No 133
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=99.41 E-value=8e-12 Score=106.06 Aligned_cols=233 Identities=13% Similarity=0.164 Sum_probs=147.3
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
+|++..|++.+....+...++..++.|.++||+|||+.-+...++.+++++ +-..++++.++++|++.|++.+..+.+-
T Consensus 64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~F 142 (354)
T PF05631_consen 64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAF 142 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 399999999999999999999999999999999999999999999999886 4456889999999999999999998888
Q ss_pred hhhhh-hcC----CCCcccchhhHHH-HHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc-cccCChh
Q 041698 155 PLYLS-EMA----PYRFRGALNIGFQ-LSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM-ILPDTPN 227 (355)
Q Consensus 155 ~~~~~-~~~----~~~~r~~~~~~~~-~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~e~~~ 227 (355)
.+++. |.- |++..+...+... ...++-.+.+.+++..+.+..+ .|-..+|.......++..+.+. ..+|.+.
T Consensus 143 EsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~-~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 143 ESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG-FGPVAPFDAAIVLLAVAAVLILKTWPENYG 221 (354)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHHHHhcccccCC
Confidence 88764 332 2222222222222 2233344555556655554222 2346677776666555544443 3455532
Q ss_pred HHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHH
Q 041698 228 SIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAP 307 (355)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (355)
....+ .+. .+.-+..++.+.+ .++.+.......+.....+..+..|.|
T Consensus 222 ~~~~~---~~~--------------------------~~~~~~a~~~i~~---d~ril~LG~~qslFE~smy~FVflWtP 269 (354)
T PF05631_consen 222 DTSSS---SSL--------------------------SGSFREAWRAILS---DPRILLLGLIQSLFEGSMYLFVFLWTP 269 (354)
T ss_pred Ccccc---cch--------------------------HHHHHHHHHHHHc---CchhHHHHHHHHHHHHHHHHheeeeec
Confidence 10000 000 0000111222222 234455556666666665666667777
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheec
Q 041698 308 VLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVD 343 (355)
Q Consensus 308 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 343 (355)
.+..+ -.....|++++.+.++.++|+.+..++..
T Consensus 270 aL~~~--~~~~P~GlIFssFM~a~MlGS~lf~~l~s 303 (354)
T PF05631_consen 270 ALDPD--DEELPLGLIFSSFMVAMMLGSSLFSRLLS 303 (354)
T ss_pred eecCC--CCCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 66521 12334678888888888888877755443
No 134
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.41 E-value=1.3e-12 Score=119.30 Aligned_cols=139 Identities=9% Similarity=0.032 Sum_probs=115.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhh--hchhHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQ--FGRKLSMFF--GGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr--~Grr~~l~~--~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|++..+.+++.++..++..+++++.|+++|| +++|+...+ +.++.+++.++....++++.+++.+++.|++.+...
T Consensus 272 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~ 351 (455)
T TIGR00892 272 GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVG 351 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHH
Confidence 8899999999999999999999999999997 344443333 344444555566678889999999999999999999
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIIT 216 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 216 (355)
+...+++.|.+|++++++..+++.....+|..++|.+++.+.+..+ +|+..|++.++..++..
T Consensus 352 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g--~~~~~f~~~~~~~li~~ 414 (455)
T TIGR00892 352 ALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK--NYKYIFYASGSIVVSAG 414 (455)
T ss_pred HHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC--CcchHHHHhhHHHHHHH
Confidence 9999999999999999999999999999999999999999887332 58888888777655443
No 135
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.40 E-value=6.6e-12 Score=112.28 Aligned_cols=140 Identities=16% Similarity=0.125 Sum_probs=114.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+..+.+++.+...++..+++++.|+++||+|+|+++..+..+..++.+... + ........++.|++.....|...
T Consensus 231 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g~~~~~~~p~~~ 307 (381)
T PRK03633 231 GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILGAAGFTLYPVAM 307 (381)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHHHHHHhHHHHHH
Confidence 78888999999999999999999999999999999999888888777665443 2 23344567777887777788888
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcc
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMI 221 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 221 (355)
..+.|..|+++++...+......++|..++|.+++.+.+ +.+|++.|.+.+.+.++..+..++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~---~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 308 AWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ---NYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCccHHHHHHHHHHHHHHHHHHh
Confidence 999999988888888888888999999999999999988 567999998877776655544443
No 136
>PRK09952 shikimate transporter; Provisional
Probab=99.40 E-value=1.1e-11 Score=112.95 Aligned_cols=149 Identities=13% Similarity=0.099 Sum_probs=109.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH---h-hHHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF---A-QAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~-~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|.+......+.....+...++.++.|+++||+|||++++.+.++..++.+.... . ++.+.+++..++.+++.+...
T Consensus 282 g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 361 (438)
T PRK09952 282 GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVV 361 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 667766655666666777888999999999999999998887766655443322 1 234455556677788888888
Q ss_pred cchhhhhhhcCCCCcccchhhHHH-HHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCC
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQ-LSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDT 225 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~ 225 (355)
+...+++.|.+|++.|+...++.. .+..+|..++|.+.+.+.+..+ .+|+..+...++..++..+..+.++|+
T Consensus 362 ~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~-~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 362 CVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG-GSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 888899999999999988888754 4455899999999999876432 358888877777666666655556654
No 137
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.40 E-value=1.2e-11 Score=106.79 Aligned_cols=249 Identities=13% Similarity=0.145 Sum_probs=158.6
Q ss_pred ccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhc-----hhHHHH-HHHHHHHHHHHHHHHh-----h--------
Q 041698 71 TNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFG-----RKLSMF-FGGILFLAGALLNGFA-----Q-------- 131 (355)
Q Consensus 71 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-----rr~~l~-~~~~~~~~~~~~~~~~-----~-------- 131 (355)
|..|++++....+.+.+.+++.+. ..+.+|+.||+.+ ||..++ .|.++...+..+.+++ .
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 355679999999999999888776 5899999999998 886554 4555555555554442 2
Q ss_pred H-H--HHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhh
Q 041698 132 A-I--WMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGA 208 (355)
Q Consensus 132 ~-~--~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~ 208 (355)
. . ....+...+.|++.+...++..++++|..|+++|+++.++......+|.+++..+.+.+.+......-.-++...
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~ 164 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGV 164 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence 1 2 234456678899999999999999999999999999999999999999999999999887632111111122222
Q ss_pred HHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHH
Q 041698 209 MVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAV 288 (355)
Q Consensus 209 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (355)
++++++..+...+=.|+++....+. .++++...+..++++...+..++++...
T Consensus 165 a~i~~~l~~ia~wg~E~r~~~~~~~---------------------------~~~~~~~f~~a~~~~~~~~~a~~f~~fl 217 (403)
T PF03209_consen 165 ALIALLLNLIALWGQEPRRSRRAAA---------------------------AERPRPPFREAWRQVWASPQARRFFVFL 217 (403)
T ss_pred HHHHHHHHHHHHHhcccCCcccccC---------------------------CCCCCccHHHHHHHHHhCCChhHHHHHH
Confidence 3333222223333344332111000 0001111123455555555555555554
Q ss_pred HHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheec-ccCCccc
Q 041698 289 LIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVD-KWGRRFL 350 (355)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~r~~ 350 (355)
++..+..+. --...-||=-+.+|++..++..+....+.+.++|..+.+++.. |.++++.
T Consensus 218 ~l~t~a~~~---QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~ 277 (403)
T PF03209_consen 218 FLGTLAFFM---QDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRT 277 (403)
T ss_pred HHHHHHHHh---hHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 443332211 1111223333558999999999999999999999999997766 5555554
No 138
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.40 E-value=4.9e-12 Score=114.58 Aligned_cols=148 Identities=16% Similarity=0.103 Sum_probs=125.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+..+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+...++.++.|++.+...+...
T Consensus 255 g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 334 (417)
T PRK10489 255 QMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQY 334 (417)
T ss_pred CCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999998888888888888888888888888888888899999998887777888
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHH-HHhccccCCh
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIIT-VGSMILPDTP 226 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~e~~ 226 (355)
+++.|..|++.|+++.+++.....+|..+++.+.+.+.+ ..+++..+...++..++.. +....++|.+
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 335 TLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA---MMTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH---HhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 899999999999999999999999999999999999988 4567777776666544433 3345556654
No 139
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.40 E-value=2.9e-12 Score=113.50 Aligned_cols=246 Identities=16% Similarity=0.138 Sum_probs=166.4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhh----hchh-HHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHhh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQ----FGRK-LSMFFGGILFLAGALLNGFAQ------AIWMLIVGRLLLG 144 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~------~~~~l~~~r~l~G 144 (355)
|++...+|.+..+-=+--++.-|+.|.++|| +||+ +.++++.+..++.+.++-.++ +....++...+.+
T Consensus 44 Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~ 123 (467)
T COG2211 44 GLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLG 123 (467)
T ss_pred CCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999996 7864 666777788888887776665 3566677788889
Q ss_pred hcccccccchhhhhhhcCC-CCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC----ccchHHHHhhhHHHHHHHHHHh
Q 041698 145 FGIGFANQSVPLYLSEMAP-YRFRGALNIGFQLSITVGILIANVLNYFFNKIHG----GWGWRLSLGGAMVPALIITVGS 219 (355)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~----~~~w~~~~~~~~~~~~~~~~~~ 219 (355)
++......+..++..|+.+ ++||.+..+.-..+.++|.++...+...+....+ ..||+....+.+++.++..+..
T Consensus 124 l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~ 203 (467)
T COG2211 124 LGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFC 203 (467)
T ss_pred HHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 9999998888899998875 6889999999999988887766665555543221 3588888888887766655544
Q ss_pred -ccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhc-cCchhHHHHHHHHHHHHHcc
Q 041698 220 -MILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQ-KKYRPHLTMAVLIPFFQQFT 297 (355)
Q Consensus 220 -~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 297 (355)
+.++|.+... .+.++..+.++++.+. ..++++ +...++..++...
T Consensus 204 ~~~v~ER~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~Nrp-~~~~l~~~l~~~~ 250 (467)
T COG2211 204 FFNVKERVVET--------------------------------QPTKTGVKLKLKDSFLLIFKNRP-LLLLLLMNLLLFI 250 (467)
T ss_pred HHHhhcccCcc--------------------------------ccCcccccccHHHHHHHHHccch-HHHHHHHHHHHHH
Confidence 4466654200 0000011222332221 111122 2222223333333
Q ss_pred cccchHhcHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 298 GINVIMFYAPVLFN-TIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 298 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
..+.......++.+ ..|.++............+.+++.++..++.+|+|+|+++.++
T Consensus 251 ~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~ 308 (467)
T COG2211 251 AFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIG 308 (467)
T ss_pred HHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHH
Confidence 33333434444443 2566667777777777888888899999999999999988654
No 140
>PRK03545 putative arabinose transporter; Provisional
Probab=99.38 E-value=2.2e-11 Score=109.24 Aligned_cols=140 Identities=19% Similarity=0.130 Sum_probs=114.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGA-LLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
|.|..+.+++.+...++..+++++.|+++||+|||+.. .+..+..++. ......++.+.++++.++.|++.+...+..
T Consensus 237 g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 315 (390)
T PRK03545 237 GLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAM 315 (390)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHH
Confidence 88899999999999999999999999999999988754 4444444443 334456778888889999999887777777
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
...+.+..| ++|+++++++.....+|..+||++++.+.+ +.+++..|++.+.+.++.++...
T Consensus 316 ~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~---~~g~~~~~~~~~~~~~~~~~~~~ 377 (390)
T PRK03545 316 QVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSL---HLGLSSIGYVGAALALAALVWSI 377 (390)
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccChhHHHHHHHHHHHHHHHHHH
Confidence 788888876 678999999999999999999999999998 67899999988887776655543
No 141
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.38 E-value=1e-11 Score=114.11 Aligned_cols=145 Identities=15% Similarity=0.036 Sum_probs=108.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHhhhcccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALL--NGFAQAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~--~~~~~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
|+|..+.++..+...++..++.+++|+++||+|||+.+.....+..++... ....++.+.+.+.+++.|+........
T Consensus 290 g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 369 (467)
T PRK09556 290 GFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLL 369 (467)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHH
Confidence 889999999999999999999999999999999998876655444443322 223456666778888888654333333
Q ss_pred hhhhhhhcCCCCcccchhhHHHHHHHH-HHHHHHHHHHHhhcC-C--------CccchHHHHhhhHHHHHHHHHHhc
Q 041698 154 VPLYLSEMAPYRFRGALNIGFQLSITV-GILIANVLNYFFNKI-H--------GGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~i~~~~~~~-~--------~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
......|.+|++.|+++.++.+....+ |..++|.+.|.+.+. . ...+|+..|++..+..++..+..+
T Consensus 370 ~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 370 IGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 345677999999999999999988886 779999999999871 0 024699999877666665544443
No 142
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.38 E-value=3.4e-12 Score=114.40 Aligned_cols=133 Identities=13% Similarity=0.069 Sum_probs=106.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHH--HHHHH--hhHHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGA--LLNGF--AQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~--~~~~~--~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+..+..+.. +...+ .++.+.+.+..++.|++.+...
T Consensus 251 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 330 (394)
T TIGR00883 251 GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYT 330 (394)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh
Confidence 7888999999999999999999999999999999998876655544433 22222 2466777788888999888899
Q ss_pred cchhhhhhhcCCCCcccchhhH-HHHHHHHHHHHHHHHHHHhhcCCCccc-hHHHHhhhHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIG-FQLSITVGILIANVLNYFFNKIHGGWG-WRLSLGGAMVP 211 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~i~~~~~~~~~~~~-w~~~~~~~~~~ 211 (355)
+...+++.|.+|+++|+++.++ ...+..+|..++|.+++.+.+. .+ |+..++...+.
T Consensus 331 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~---~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 331 GPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM---TGDWYAIGYYLAAL 389 (394)
T ss_pred hhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH---cCcchhHHHHHHHH
Confidence 9999999999999999999997 4566678999999999999873 44 77766655443
No 143
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.36 E-value=1e-11 Score=111.26 Aligned_cols=139 Identities=14% Similarity=0.108 Sum_probs=103.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhH--HHH------HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKL--SMF------FGGILFLAGALLNGFAQAIWMLIVGRLLLGFGI 147 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~--~l~------~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 147 (355)
|.+..+.+++.+...++..++.++.|+++||+|||+ ... .+.++..+........++.+..+....+.+.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (399)
T TIGR00893 247 GLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGL 326 (399)
T ss_pred cccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhch
Confidence 788899999999999999999999999999999996 111 111111111111222334454554555555554
Q ss_pred cccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccc-hHHHHhhhHHHHHHHHHH
Q 041698 148 GFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWG-WRLSLGGAMVPALIITVG 218 (355)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~~ 218 (355)
+ ..+....++.|..|+++|++..++......+|..++|.+.+.+.+ ..+ |+..|++.++..++..+.
T Consensus 327 ~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~---~~g~~~~~~~~~~~~~~~~~~~ 394 (399)
T TIGR00893 327 G-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAA---TTGSFAGALMVVAALALIGALS 394 (399)
T ss_pred h-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhcc---CCCchhHHHHHHHHHHHHHHHH
Confidence 4 788899999999999999999999999999999999999999987 455 888888777766655443
No 144
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.36 E-value=3.2e-11 Score=108.22 Aligned_cols=147 Identities=14% Similarity=0.058 Sum_probs=113.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ-AIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
|.+..+.+...+.+.++..++.++.|++.||+|||+.+..+..+..++..+....+ +...+ .-++.|++.+...+..
T Consensus 236 g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~ 313 (393)
T PRK09705 236 GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLC 313 (393)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHH
Confidence 88999999999999999999999999999999999999998888777766554322 22222 2245688877777877
Q ss_pred hhhhhhcCC-CCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccCCh
Q 041698 155 PLYLSEMAP-YRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPDTP 226 (355)
Q Consensus 155 ~~~~~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~ 226 (355)
.....+..+ +++|++..++.+....++..++|.+.+++.+..+ +|...|.+.+...++...+ ..+.||++
T Consensus 314 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 314 LLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG--NYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 766667764 5778999999999999999999999999988544 4777777766665554444 34567765
No 145
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.35 E-value=1.7e-11 Score=112.87 Aligned_cols=148 Identities=13% Similarity=0.010 Sum_probs=114.4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh-----h------HHHHHHHHHHHhh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA-----Q------AIWMLIVGRLLLG 144 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~------~~~~l~~~r~l~G 144 (355)
|++..+.++......++..++.++.|+++||+|||+.+.++.++.+++.++.++. + +...+....++.+
T Consensus 315 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (481)
T TIGR00879 315 GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIA 394 (481)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHH
Confidence 7888888999999999999999999999999999999999988888877666521 1 2333333333333
Q ss_pred hcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-cccc
Q 041698 145 FGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILP 223 (355)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~ 223 (355)
.......+....++.|.+|+++|++++++.....++|.+++|.+.+.+.+ +.+|++.|++.++++++..+.. ++.|
T Consensus 395 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~---~~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 395 FFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE---SIGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred HHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCccceehhHHHHHHHHHHHHheecc
Confidence 33333446667778999999999999999999999999999999998877 4679988888877766655554 4556
Q ss_pred CCh
Q 041698 224 DTP 226 (355)
Q Consensus 224 e~~ 226 (355)
|++
T Consensus 472 ~~~ 474 (481)
T TIGR00879 472 ETK 474 (481)
T ss_pred cCC
Confidence 654
No 146
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.35 E-value=4.2e-11 Score=110.51 Aligned_cols=151 Identities=15% Similarity=0.081 Sum_probs=109.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh--H-H-HHHHHHHHHhhhcccc-c
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ--A-I-WMLIVGRLLLGFGIGF-A 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~-~-~~l~~~r~l~G~~~g~-~ 150 (355)
|.+.....+......++..++.++.|+++||+|||+.++.+.++.+++.++.+... + . .....+.++.+.+.+. .
T Consensus 302 g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (479)
T PRK10077 302 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW 381 (479)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccc
Confidence 77777777777788889999999999999999999999999999888887765432 1 1 1222333444444333 2
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc---CCCccchHHHHhhhHHHHHHHHHHh-ccccCCh
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK---IHGGWGWRLSLGGAMVPALIITVGS-MILPDTP 226 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~---~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~ 226 (355)
.+....++.|.+|+++|++++++......+|..+++.+...+.+ ..++.+|++.|++.+++.++..+.. ++.||++
T Consensus 382 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 382 GPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred cchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 36678999999999999999999999999999888766654441 0114678888888777666555544 4567764
No 147
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.34 E-value=1.3e-11 Score=111.24 Aligned_cols=129 Identities=12% Similarity=0.034 Sum_probs=107.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGAL-LNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
|++..+.+++.+...++..++.++.|+++||+|||+.+.++.++..+..+ .....++.+.+.+..++.|+..+...+..
T Consensus 270 g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (405)
T TIGR00891 270 GLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGIL 349 (405)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhH
Confidence 88999999999999999999999999999999999999888776543332 33344566777777777787777777888
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccc-hHHHHhh
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWG-WRLSLGG 207 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~-w~~~~~~ 207 (355)
..++.|.+|+++|++++++.+....+|..++|++.+.+.+. .| |+..+..
T Consensus 350 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~---~g~~~~~~~~ 400 (405)
T TIGR00891 350 PKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR---LDEYGTALAS 400 (405)
T ss_pred HHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh---ccccchhHHh
Confidence 89999999999999999999999999999999999999883 44 6655543
No 148
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.32 E-value=5.5e-11 Score=107.12 Aligned_cols=141 Identities=11% Similarity=0.109 Sum_probs=108.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHH-HHHHHHHHHHHHHHH-----hhHHHHHHHHHHHhhhcccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMF-FGGILFLAGALLNGF-----AQAIWMLIVGRLLLGFGIGF 149 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~ 149 (355)
|++..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+.... .++.+.+++..++.|++.+.
T Consensus 253 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 332 (402)
T TIGR00897 253 GFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAG 332 (402)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999988764 333333443333322 24567777888888988776
Q ss_pred cccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcc
Q 041698 150 ANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMI 221 (355)
Q Consensus 150 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 221 (355)
..+ ....+.|.. +++|+++.++.+....+|..++|.+++.+.+ ..||+..+++.++..++..+...+
T Consensus 333 ~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~---~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 333 YVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIG---FFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcchHHHHHHHHHHHHHHHHHHHH
Confidence 544 445667765 4689999999999999999999999999988 567999998888776665554443
No 149
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.31 E-value=7.1e-11 Score=101.80 Aligned_cols=248 Identities=15% Similarity=0.146 Sum_probs=163.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhhhhhhhchh-HHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHhhhcccccccc
Q 041698 78 DSETLTMFTSSLYLAALLSSLVASRVTRQFGRK-LSMFFGGILFLAGALLNGFAQA---IWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 78 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr-~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~g~~~~~ 153 (355)
+.+..+...++..+..++-+|+.|.++|+.|+| +.+-....+..++.++..++++ ++..++...+..++.......
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 456788888999999999999999999999955 5555666666666666666654 455566668888888889999
Q ss_pred hhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHh--hc-------------CCCccchHHHHhhhHHHHHHHHH-
Q 041698 154 VPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFF--NK-------------IHGGWGWRLSLGGAMVPALIITV- 217 (355)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~--~~-------------~~~~~~w~~~~~~~~~~~~~~~~- 217 (355)
..+++.+..++++-++..++......+|..+.-++.... .. ..+...=|..+.+.++.-++..+
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 999999999998889888887777777776655443111 11 01134567778777777555443
Q ss_pred HhccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcc
Q 041698 218 GSMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFT 297 (355)
Q Consensus 218 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (355)
.++.+++.++-. ....+.. . ..-++.+.++++..+++. .+......++.+ -
T Consensus 216 m~~~v~~~~~~~---~~~~~~l------------~----------~g~k~L~~t~k~i~~~~~---i~~FLiA~~~~~-D 266 (438)
T COG2270 216 MILNVHDAEKIS---SPPPTAL------------R----------NGFKELKSTFKEIRGRKN---LVLFLIARFFYI-D 266 (438)
T ss_pred HHhccccccccc---ccchHHH------------H----------HHHHHHHHHHHHHhcccc---hHHHHHHHHHHH-h
Confidence 445566654310 0000000 0 000111233444443332 222333333333 3
Q ss_pred cccchHhcHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 298 GINVIMFYAPVLF-NTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 298 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
+.+........+- .++|++..+...+.....+.+++|+++.|++.||+|.|++++.+
T Consensus 267 Gv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~ 324 (438)
T COG2270 267 GVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIG 324 (438)
T ss_pred hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHH
Confidence 3444444555554 47999999999999999999999999999999999999877653
No 150
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.30 E-value=5.6e-11 Score=107.99 Aligned_cols=152 Identities=16% Similarity=0.195 Sum_probs=131.1
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchh--HHHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHH
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRK--LSMFFGGILFLAGALLNGF--------AQAIWMLIVGRL 141 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~--------~~~~~~l~~~r~ 141 (355)
++++|++..+...+.-...+..++|++++|++.||+|.| ++++++.+++.+..+...+ .++.+.+.+.-+
T Consensus 309 ~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~ 388 (477)
T PF11700_consen 309 TEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAV 388 (477)
T ss_pred HHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHH
Confidence 345599999999999999999999999999999999999 8999998888777766666 678888999999
Q ss_pred HhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcc
Q 041698 142 LLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMI 221 (355)
Q Consensus 142 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 221 (355)
+.|+..|..++..-++.+|..|+++.+...|++....-....+||++.+.+.+.++ +-|+.+....++.++.+++.++
T Consensus 389 ~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg--~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 389 LIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG--SQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999998765 4666666666666666666666
Q ss_pred ccCC
Q 041698 222 LPDT 225 (355)
Q Consensus 222 ~~e~ 225 (355)
++++
T Consensus 467 v~~~ 470 (477)
T PF11700_consen 467 VDVE 470 (477)
T ss_pred ccch
Confidence 6544
No 151
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.28 E-value=1.4e-10 Score=103.83 Aligned_cols=136 Identities=20% Similarity=0.122 Sum_probs=114.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+..+.+.+.+...++..+..++.|++.||+|+|+.+..+.+..+++.+..++.++.+.+++..++.|++.+...+...
T Consensus 236 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 315 (382)
T PRK11128 236 GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAM 315 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88989999999999999999999999999999999999999999998888888899999999999999999998889999
Q ss_pred hhhhhcCCCCcccchhhHHH-HHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHH
Q 041698 156 LYLSEMAPYRFRGALNIGFQ-LSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIIT 216 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 216 (355)
.++.+. +++++++..+... ....+|..++|.++|.+.+ ..++ ..++..++++++.+
T Consensus 316 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~---~~g~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 316 RYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ---HLGA-GVFWVMALVALPAL 372 (382)
T ss_pred HHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccH-HHHHHHHHHHHHHH
Confidence 998887 4556788888775 5567888999999999988 4456 35555555554433
No 152
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.28 E-value=1.2e-10 Score=108.10 Aligned_cols=141 Identities=16% Similarity=0.085 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHhhhcccccccchhhhhhhcC
Q 041698 87 SSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQA----IWMLIVGRLLLGFGIGFANQSVPLYLSEMA 162 (355)
Q Consensus 87 s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~----~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~ 162 (355)
....++..++.++.++++||+|||+.++++.++.+++.++.++..+ ...+...-+...++.....+....+.+|.+
T Consensus 342 ~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ 421 (502)
T TIGR00887 342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF 421 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence 3445566778899999999999999999888887777666554321 111111111112222234456667789999
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC-------ccchHHHHhhhHHHHHHHHHHhccccCChh
Q 041698 163 PYRFRGALNIGFQLSITVGILIANVLNYFFNKIHG-------GWGWRLSLGGAMVPALIITVGSMILPDTPN 227 (355)
Q Consensus 163 ~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~-------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~ 227 (355)
|++.|+++.++......+|.+++|.+.+.+.+..+ +.++...|++.++..++..+..+++||++.
T Consensus 422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~ 493 (502)
T TIGR00887 422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKG 493 (502)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCCC
Confidence 99999999999999999999999999998876321 134556677777666665555567798753
No 153
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.27 E-value=1e-10 Score=107.43 Aligned_cols=139 Identities=19% Similarity=0.309 Sum_probs=126.4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+....|++.+++.+|..+|+++.+++.+|+++++.+..+.++.+++.+..+++++.+..++..++.|++.....+...
T Consensus 250 ~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~ 329 (524)
T PF05977_consen 250 GGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLN 329 (524)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHH
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITV 217 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 217 (355)
+.+.+..|++.|||+++++.+....+..+|..+.|.+.+ ..|-+..+.+.++..++..+
T Consensus 330 t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~---~~g~~~al~~a~~~lll~~~ 388 (524)
T PF05977_consen 330 TLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD---HFGVRTALLIAGAALLLSAL 388 (524)
T ss_pred HHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988 56788877766655444333
No 154
>PRK10504 putative transporter; Provisional
Probab=99.26 E-value=5.4e-11 Score=109.53 Aligned_cols=119 Identities=11% Similarity=0.073 Sum_probs=103.2
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHhhhccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA---QAIWMLIVGRLLLGFGIGFANQ 152 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~ 152 (355)
|.+..+.++......++..++.++.|++.||+|||+++..+.++.+++..+..+. ++.+.+.+..++.|++.+...+
T Consensus 293 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 372 (471)
T PRK10504 293 GFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFS 372 (471)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999999999999999999988888877666653 3344455667788888888888
Q ss_pred chhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 153 SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
....+..+..|+++|+...++.+....+|..+|+.+++.+.+
T Consensus 373 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~ 414 (471)
T PRK10504 373 SMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG 414 (471)
T ss_pred HHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999988765
No 155
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.25 E-value=2.6e-10 Score=103.67 Aligned_cols=125 Identities=12% Similarity=0.034 Sum_probs=94.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHhhhcccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ--AIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+.++.++..+.....+ +...+.+..+..+.+..+..+.
T Consensus 262 g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (426)
T PRK12307 262 GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGL 341 (426)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHH
Confidence 77888899999999999999999999999999999999988877766655444332 2222222222222232333455
Q ss_pred hhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHH
Q 041698 154 VPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRL 203 (355)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~ 203 (355)
.+.++.|.+|+++|++++++......+|..++|.+.+.+.+ ..++..
T Consensus 342 ~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~---~~g~~~ 388 (426)
T PRK12307 342 VPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGI---TMGLGA 388 (426)
T ss_pred HHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH---cccHHH
Confidence 66788999999999999999999999999999999999987 445544
No 156
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.24 E-value=3.5e-10 Score=98.39 Aligned_cols=143 Identities=13% Similarity=0.153 Sum_probs=120.2
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhccccccc
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA-QAIWMLIVGRLLLGFGIGFANQ 152 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~ 152 (355)
..|+|.+.++++.-.+.++..+|+++.|+++|| +.|+.+.....+.++..+...+. ++.+..++.-++.|++.+....
T Consensus 241 v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~ 319 (394)
T COG2814 241 VAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQ 319 (394)
T ss_pred ccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhh
Confidence 338999999999999999999999999999999 99999999988888877776654 5566677777778888777666
Q ss_pred chhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcc
Q 041698 153 SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMI 221 (355)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 221 (355)
.....+++ ..++.+..+.+++....++|..+|..+++.+.+ ++|+....++.++..++.+...+.
T Consensus 320 ~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~---~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 320 GLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLD---ALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred HHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhchHHHHHHHHHHHHHHHHHHHH
Confidence 66666667 446778999999999999999999999999998 688999999988887776665543
No 157
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.23 E-value=2.3e-10 Score=105.45 Aligned_cols=146 Identities=11% Similarity=0.115 Sum_probs=113.7
Q ss_pred cCCcchhHHHHH-HHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHH---HHh-hHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTS-SLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLN---GFA-QAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s-~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~l~G~~~g~~ 150 (355)
|++..+.+++.. ...++..++.++.|+++||+|+|+.+.++.++.+++.++. +.. ++.+.+.+.-++..+..|..
T Consensus 254 G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~ 333 (491)
T PRK11010 254 GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMG 333 (491)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 899999999974 6668999999999999999999998877766655544332 232 34555555566655555555
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccC
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPD 224 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (355)
.+...++..+..+++.+++..++.+...++|..+++.++|.+.+ ..||+..|.+.++.+++..+....+++
T Consensus 334 ~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~---~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 334 TAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE---AHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66678888899999999999999999999999999889999988 568999998888887776666555544
No 158
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.23 E-value=2.8e-10 Score=103.52 Aligned_cols=146 Identities=12% Similarity=-0.020 Sum_probs=93.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH--H--hhHHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNG--F--AQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~--~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|.+..+.+...+...++..+++++.|+++||+|||+.+.++.++.++...... . .++....+..-.+.+...+...
T Consensus 275 g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (432)
T PRK10406 275 GMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYT 354 (432)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 78888889988888888899999999999999999988777665444332221 1 1222222222222223333334
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHH-HHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccC
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITV-GILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPD 224 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (355)
+....+..|++|++.|+.++++.+...++ .....|.+.+.+.. .+ .|...++..++..++..+..+++++
T Consensus 355 ~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~-~g--~~~~~~~~~~~~~~i~~~~~~~l~~ 425 (432)
T PRK10406 355 SISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKS-IG--METAFFWYVTLMAVVAFLVSLMLHR 425 (432)
T ss_pred HHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHH-hC--CCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 45667889999999999999998765443 34457777775543 11 3555555555555555444444433
No 159
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.23 E-value=1.5e-10 Score=102.70 Aligned_cols=119 Identities=18% Similarity=0.119 Sum_probs=110.4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQA-IWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
|.+..+.+.+.+...++..++.++.+++.||+|||+.+..+..+.+++..+..+.++ .+.+.+..++.|++.+...+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 322 (365)
T TIGR00900 243 GRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQ 322 (365)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999888888888887777774 8888899999999999999999
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
.+++.|..|+++|++..++......+|..++|.+++.+.+
T Consensus 323 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 323 GTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876
No 160
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.22 E-value=1.9e-10 Score=105.22 Aligned_cols=142 Identities=13% Similarity=0.072 Sum_probs=98.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh--chhHHH-HHHHHHHHHHHHHHHH--hhHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQF--GRKLSM-FFGGILFLAGALLNGF--AQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~ 150 (355)
|++..+.++....+.++..++.++.|+++||+ |||+.. .....+..++.+...+ .++.+..+++.++.|.+....
T Consensus 285 g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 364 (452)
T PRK11273 285 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGP 364 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhH
Confidence 78888999999999999999999999999999 555432 2222333333332222 234444445555555543322
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHH-HHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGIL-IANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
......+..|.+|+++|++++++.+....+|.. ++|.+.+.+.+ ..||+..|++.++.+++.++...
T Consensus 365 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~---~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 365 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD---FFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH---HhcchHHHHHHHHHHHHHHHHHH
Confidence 333345677999999999999999988888765 47999999987 56799999887777666555443
No 161
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.22 E-value=2.7e-10 Score=102.51 Aligned_cols=140 Identities=15% Similarity=0.196 Sum_probs=118.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
+.+....+.+.+...+...++.+..|++.||+|||+.+.++.++.++...+...+++.+.+++.++++|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788899999999999999999999999999999999998888888878888999999999999998776666666
Q ss_pred hhhhhcCCCCcccchhhH-HHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH
Q 041698 156 LYLSEMAPYRFRGALNIG-FQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG 218 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 218 (355)
.+..+..+++.++...+. .+....+|..+++.+++++.+ ..||+..|.+.+++.++..+.
T Consensus 330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~---~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD---SIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH---hcccHHHHHHHHHHHHHHHHH
Confidence 777888887777776665 678899999999999999988 568999999888776665443
No 162
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=99.21 E-value=1.3e-10 Score=104.43 Aligned_cols=239 Identities=16% Similarity=0.201 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh--cccccccchhhhhhhcCCCC
Q 041698 88 SLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGF--GIGFANQSVPLYLSEMAPYR 165 (355)
Q Consensus 88 ~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~--~~g~~~~~~~~~~~~~~~~~ 165 (355)
...+...+.++..|.++||+|||..+.+......+..++..+.. +|.++ +.++ +.+.......++++|....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence 34677789999999999999999999999999999888877766 44433 4444 23456778889999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccCChhHHHhcCChHHHHHHHHH
Q 041698 166 FRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPDTPNSIIERGRHEEAREELRK 244 (355)
Q Consensus 166 ~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~ 244 (355)
+|....++.......+..++|.+++.+.+ ..+.-..|.+..+..++..+. .+++||+-...... ++ ..++
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~---~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~---~~---~~~~ 215 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLVK---FLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS---DA---TLRE 215 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH---hcCchHHHHHHHHHHHHHHHHHhhccccccCccccc---cc---cccc
Confidence 99999999999999999999999999988 467778888888777666554 46678875311110 00 0000
Q ss_pred HhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHH-HhcCCCCcHHHHH
Q 041698 245 VRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLF-NTIGFGSDASLMS 323 (355)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~ 323 (355)
....... .......++...+....+..+......++....-.....-..++++ ..+++++++.+.+
T Consensus 216 ~~~~~~~-------------~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~ 282 (463)
T KOG2816|consen 216 LTPGSLD-------------SSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDL 282 (463)
T ss_pred cCCCccc-------------chhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHH
Confidence 0000000 0000111111111111222233233323222221111110112222 4589999999999
Q ss_pred HHHHHHHHHHHhhhhh-heecccCCcccccc
Q 041698 324 AVITGIVNVVATMVSI-YGVDKWGRRFLFLE 353 (355)
Q Consensus 324 ~~~~~~~~~~~~~~~g-~l~d~~g~r~~~~~ 353 (355)
.+..+....++.++.. .+...++.|+....
T Consensus 283 ~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~l 313 (463)
T KOG2816|consen 283 LSLVSILGIISQLLLLPLLSSILGEKRLISL 313 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhhH
Confidence 9999999999988887 66666777764433
No 163
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.21 E-value=2.1e-10 Score=105.45 Aligned_cols=143 Identities=14% Similarity=0.064 Sum_probs=99.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchh-------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRK-------LSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIG 148 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 148 (355)
|++..+.+.+.+++.++..++.+++|+++||+||| ....+..++.++..++....++.+...+.-++.+++.+
T Consensus 284 g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 363 (476)
T PLN00028 284 GLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQ 363 (476)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999875 23333333333334444555666655556666666655
Q ss_pred ccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcccc
Q 041698 149 FANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILP 223 (355)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 223 (355)
...+....+..+.. +++|+...++...+..+|..+++.+.+ ..+..+|+..|++.+++.++..++.++++
T Consensus 364 ~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~----~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 364 AACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF----TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH----hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 55555556666655 468999999988877777777776543 11234699999888877776666555544
No 164
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.21 E-value=6.7e-10 Score=99.72 Aligned_cols=139 Identities=17% Similarity=0.078 Sum_probs=106.8
Q ss_pred cCCcchhHHHHHHHH-HHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHhhhccc
Q 041698 76 QYDSETLTMFTSSLY-LAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF------AQAIWMLIVGRLLLGFGIG 148 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~-l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~l~~~r~l~G~~~g 148 (355)
|++.++.+++..... ....++.++.|++.||+|+|+.+..+..+.++..+.... .++...+.....+.+++.+
T Consensus 239 G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 318 (390)
T TIGR02718 239 GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITG 318 (390)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHH
Confidence 899999999988876 466778999999999999999998877766443332221 1233344555566667777
Q ss_pred ccccchhhhhhhcCCC-CcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHH
Q 041698 149 FANQSVPLYLSEMAPY-RFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITV 217 (355)
Q Consensus 149 ~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 217 (355)
...+.......+..++ +++++.+++.+...++|..++|.+++.+.+ ..||+..|...+++.++..+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~---~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 319 ITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD---RFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHccHHHHHHHHHHHHHHHH
Confidence 7777777787777766 788999999999999999999999999987 56788888887766655443
No 165
>TIGR00898 2A0119 cation transport protein.
Probab=99.19 E-value=2.5e-10 Score=106.14 Aligned_cols=136 Identities=25% Similarity=0.172 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHhhhcccccccchhhhhhhcCC
Q 041698 86 TSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAI--WMLIVGRLLLGFGIGFANQSVPLYLSEMAP 163 (355)
Q Consensus 86 ~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~ 163 (355)
.....+...++.++.+++.||+|||+.+.++.++.+++.++..+.++. +...+.-++.+++.+...+....+..|.+|
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 440 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP 440 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344567778889999999999999999999999999888877776543 455556667777777778888899999999
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCCh
Q 041698 164 YRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTP 226 (355)
Q Consensus 164 ~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~ 226 (355)
++.|+.++++......+|.+++|.+.+ +.+ .++...+.+.+...++..+..+++||+.
T Consensus 441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 441 TVVRNLGVGVCSTMARVGSIISPFLVY-LGE----KWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH----HHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 999999999999999999999999988 433 4566677777777666666667788875
No 166
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=99.19 E-value=1.2e-09 Score=89.83 Aligned_cols=149 Identities=17% Similarity=0.170 Sum_probs=114.7
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHhh
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA-------QAIWMLIVGRLLLG 144 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G 144 (355)
++.+|+|.+|...+.++..+|..+| ++.|.+.|++|++.++.+|.+...+|......+ .++|.+.+..++.|
T Consensus 29 k~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~ 107 (250)
T PF06813_consen 29 KSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGG 107 (250)
T ss_pred HHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHc
Confidence 4455999999999999999999875 889999999999999999999999999776653 36788888888888
Q ss_pred hcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccC
Q 041698 145 FGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPD 224 (355)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e 224 (355)
.+.+....+......+.+| ++||.+.++.-...++++.+-..+...+.+. ..-...+.....+.++.++..++++.
T Consensus 108 ~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~---~~~~fll~la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 108 NSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD---DPSSFLLFLAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred ccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHHHhhheec
Confidence 8877777777777788887 5799999999999999988877666655542 22334444444444444444444443
Q ss_pred C
Q 041698 225 T 225 (355)
Q Consensus 225 ~ 225 (355)
.
T Consensus 184 ~ 184 (250)
T PF06813_consen 184 V 184 (250)
T ss_pred c
Confidence 3
No 167
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.18 E-value=1.8e-10 Score=99.44 Aligned_cols=152 Identities=20% Similarity=0.218 Sum_probs=131.5
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
.+++|++..+...+.....+..++|++++|++.||+|.|+++.++.++..+.++..-+...-..+.++-.+.|.+.|+.+
T Consensus 280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~q 359 (438)
T COG2270 280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQ 359 (438)
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHH
Confidence 34569999999999999999999999999999999999999999999999999888887777777788889999999999
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCC
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDT 225 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~ 225 (355)
+.+-+|..+..|+++-++..+++....-.+..+||.+.+.+.+.++ +-|.-+....++..+.++....+|++
T Consensus 360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg--~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG--SSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc--chhhHHHHHHHHHHhhHhhEEeecCC
Confidence 9999999999999999999999999999999999999999998776 35555555444444455555666655
No 168
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.17 E-value=4.3e-10 Score=102.40 Aligned_cols=140 Identities=16% Similarity=0.043 Sum_probs=97.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh--ch-hHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHhhhcccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQF--GR-KLSMFFGG---ILFLAGALLNGFAQAIWMLIVGRLLLGFGIGF 149 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~--Gr-r~~l~~~~---~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 149 (355)
|++..+.+...+.+.++..++.++.|+++||+ ++ |....... .+..++..... ..+...+.+..+..|++...
T Consensus 275 g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~ 353 (434)
T PRK11663 275 GVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-FASYVMQAACFFTIGFFVFG 353 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHHHhh
Confidence 88999999999999999999999999999999 33 33222211 11111111111 22333333444445543322
Q ss_pred cccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh
Q 041698 150 ANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS 219 (355)
Q Consensus 150 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 219 (355)
..........|.+|+++|++++++.+....+|..++|.+.+.+.+ +.+|+..|++.+++.++..+..
T Consensus 354 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~---~~g~~~~f~~~~~~~~~~~~~~ 420 (434)
T PRK11663 354 PQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLE---IWHWTGFFVVISIAAGISALLL 420 (434)
T ss_pred HHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHH---hcccHHHHHHHHHHHHHHHHHH
Confidence 222334567899999999999999999999999999999999988 5789999988887766655444
No 169
>PRK15075 citrate-proton symporter; Provisional
Probab=99.16 E-value=1.2e-09 Score=99.42 Aligned_cols=121 Identities=13% Similarity=0.093 Sum_probs=89.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHH-HH---HhhHHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALL-NG---FAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~-~~---~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|++..+.++....+.++..++.++.|+++||+|||+.+..+..+..+.... .. ..+++..+.+..++.|++.+...
T Consensus 270 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 349 (434)
T PRK15075 270 HLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYN 349 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH
Confidence 888888899988999999999999999999999999988765544332221 11 12344444455555666666666
Q ss_pred cchhhhhhhcCCCCcccchhhHHHH-HHHHHHHHHHHHHHHhhcCC
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQL-SITVGILIANVLNYFFNKIH 196 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~i~~~~~~~~ 196 (355)
+....++.|.+|+++|+...++... +..++..++|.+.+.+.+..
T Consensus 350 ~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~ 395 (434)
T PRK15075 350 GAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT 395 (434)
T ss_pred hhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence 6677889999999999999998544 44455778999999888743
No 170
>TIGR00895 2A0115 benzoate transport.
Probab=99.14 E-value=3.7e-10 Score=101.46 Aligned_cols=117 Identities=9% Similarity=0.083 Sum_probs=99.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+..+.++..+...++..++.++.|+++||+|||+.+...........++....++.+.+++..++.|++.+...+...
T Consensus 281 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 360 (398)
T TIGR00895 281 GFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLY 360 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999555444443333333333356777788888999999999999999
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHh
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFF 192 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~ 192 (355)
+++.|.+|+++|+++.++......+|..++|.+++.+
T Consensus 361 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 361 ALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 9999999999999999999999999999999998865
No 171
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=99.14 E-value=1.2e-09 Score=95.56 Aligned_cols=269 Identities=12% Similarity=0.142 Sum_probs=169.1
Q ss_pred ccCCcchhH-HHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccc
Q 041698 75 CQYDSETLT-MFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 75 ~~~s~~~~~-~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
.|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+..+.++...+-+..++.|++.+. ..+
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-eva 113 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVA 113 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHH
Confidence 477777765 344455566778889999999999999999999999999999999999999999999999998764 777
Q ss_pred hhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcC
Q 041698 154 VPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERG 233 (355)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 233 (355)
..+|+-...++++--++.+...++..+|..++.+++-.+.... ..+++...++......+.++..+++|..++...-++
T Consensus 114 y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~-~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r 192 (412)
T PF01770_consen 114 YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFG-GVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHR 192 (412)
T ss_pred HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceec
Confidence 7888888888887788888888888888888888877776533 356777777777666666677778887665432222
Q ss_pred ChHHHHHHHHHHhCCC--ccHHHHHHH-HHHHHHhhccccc----hhhhhccCchhHHHHHHHHHHHHHcccccchHhcH
Q 041698 234 RHEEAREELRKVRGVN--DVEEEFNDL-VAASEASRQVEHP----WKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYA 306 (355)
Q Consensus 234 ~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (355)
+.++... .++...++ +.+++.++. ++....+...+.. ++++.+ -...+.++...+.+.....++..+.+|.
T Consensus 193 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~y~~~~ll~WSlWWa~atcgy~qv~nYv 270 (412)
T PF01770_consen 193 KPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKS-CYSNPRLLLWSLWWAFATCGYYQVINYV 270 (412)
T ss_pred cCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHHHH-HhcCchHHHHHHHHHHHHhHHHHHHHHH
Confidence 2111110 00000000 000000000 0000000000111 122211 1112223333344444445556666677
Q ss_pred HHHHHhc---CCCCcHHHHHHHHHHHHHHHHhhhhhheecccCC
Q 041698 307 PVLFNTI---GFGSDASLMSAVITGIVNVVATMVSIYGVDKWGR 347 (355)
Q Consensus 307 ~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~ 347 (355)
..+.++. +-.....|..-+...+.+.++.+..|++..+..+
T Consensus 271 Q~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~ 314 (412)
T PF01770_consen 271 QSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDR 314 (412)
T ss_pred HHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHH
Confidence 6666654 3344556777888888888888888888444443
No 172
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.13 E-value=2.6e-09 Score=95.94 Aligned_cols=134 Identities=10% Similarity=0.063 Sum_probs=107.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGIL-FLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
|++..+.+.+.+.+.++..++.++.+++.||.+ |+.++.+..+ .....++....++.+.+.+..++.|++.+...+..
T Consensus 248 g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~ 326 (394)
T PRK10213 248 GFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGW 326 (394)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHH
Confidence 889999999999999999999999999999965 4444444444 34434444566778888888999999999889988
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHH
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALI 214 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~ 214 (355)
.+++.+..| +++++..+.......+|..+|+.+++.+.+ ..|++..+...+++.++
T Consensus 327 ~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~---~~g~~~~~~~~~~~~~~ 382 (394)
T PRK10213 327 STWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALD---NIGLTSPLMLSGTLMLL 382 (394)
T ss_pred HHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccChhhHHHHHHHHHHH
Confidence 888998886 556788888888899999999999999988 56788888776655443
No 173
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.13 E-value=1.1e-09 Score=98.60 Aligned_cols=138 Identities=14% Similarity=0.068 Sum_probs=108.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhhhhh-hhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhh
Q 041698 78 DSETLTMFTSSLYLAALLSSLVASRVTR-QFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPL 156 (355)
Q Consensus 78 s~~~~~~~~s~~~l~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 156 (355)
++.+.+++.+...++...+..+.+++.| |++.++.+..+.++.+++.++.+++++++.+.+..++.|++.+...|...+
T Consensus 241 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~ 320 (400)
T PRK11646 241 SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARET 320 (400)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHH
Confidence 6678888888887777666666666665 467677778888888888888888888888888888889988888889999
Q ss_pred hhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccch-HHHHhhhHHHHHHH
Q 041698 157 YLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGW-RLSLGGAMVPALII 215 (355)
Q Consensus 157 ~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w-~~~~~~~~~~~~~~ 215 (355)
++.+..|+++|++.+++.+....+|..+||.+++.+.+..+..+. ...++..+...++.
T Consensus 321 ~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 380 (400)
T PRK11646 321 LSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLIT 380 (400)
T ss_pred HHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875432232 34444434444433
No 174
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.12 E-value=1.7e-09 Score=98.58 Aligned_cols=118 Identities=25% Similarity=0.334 Sum_probs=100.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhcccccccchhh
Q 041698 78 DSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA-QAIWMLIVGRLLLGFGIGFANQSVPL 156 (355)
Q Consensus 78 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~ 156 (355)
+..+.+++.+...++..++.+++++++||+|+|+++.++.++.+++.++..+. ++.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888899999999999999999999999999998888887776665 46677778888899999988888889
Q ss_pred hhhhcCC-------CCcccchhhHHHHHHHHHHHHHHHHHHHhhcC
Q 041698 157 YLSEMAP-------YRFRGALNIGFQLSITVGILIANVLNYFFNKI 195 (355)
Q Consensus 157 ~~~~~~~-------~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~ 195 (355)
+++|..+ ++++|...++.+....+|..+++.+.+.+.+.
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~ 380 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI 380 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888765 45569999999999999999999999988763
No 175
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.11 E-value=1.5e-09 Score=110.81 Aligned_cols=136 Identities=17% Similarity=0.154 Sum_probs=117.4
Q ss_pred cCCcc-hhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSE-TLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~-~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
|++.. +.+++.+...++.++++++.|+++||+++|+.+.++.++.+++.++..+..+.+.++++.++.|++.+...+..
T Consensus 264 g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 343 (1146)
T PRK08633 264 GLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPL 343 (1146)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 88888 99999999999999999999999999999999999998888888888888899989999999999999999999
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHH
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPAL 213 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~ 213 (355)
.+++.+..|++.|++++++.+....+|.++++.+++.+... .+++...+++.+.+.+
T Consensus 344 ~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~ 400 (1146)
T PRK08633 344 NALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGL--GLSPAGLFYLIALVTL 400 (1146)
T ss_pred HHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888887766541 2356556655554433
No 176
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.10 E-value=1.6e-09 Score=96.00 Aligned_cols=121 Identities=18% Similarity=0.074 Sum_probs=97.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQF-GRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
|.+..+.+.+.+...++..++.++.|++.||+ +||+.+.++.++.+++.++..+.++.+... .-++.|++.+...+..
T Consensus 228 g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~ 306 (355)
T TIGR00896 228 GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLA 306 (355)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHH
Confidence 88999999999999999999999999999999 567777788888888777776655433322 4467899998888887
Q ss_pred hhhhhhcCC-CCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 041698 155 PLYLSEMAP-YRFRGALNIGFQLSITVGILIANVLNYFFNKIHG 197 (355)
Q Consensus 155 ~~~~~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~ 197 (355)
.+.+.+..+ +++++...++.+....+|..++|.+.+.+.+..+
T Consensus 307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 307 LTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777665544 4566888898888888999999999999988554
No 177
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.09 E-value=1.3e-09 Score=99.30 Aligned_cols=148 Identities=11% Similarity=0.067 Sum_probs=97.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHH---HHHHHHHH--hhHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFL---AGALLNGF--AQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~---~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~ 150 (355)
|.+..+.++..+.+.++..++.++.|+++||+++++....+..+.. ++.+.... ..+.+...+..++.|++....
T Consensus 283 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 362 (438)
T TIGR00712 283 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGP 362 (438)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccH
Confidence 8888899999999999999999999999999975432222322221 11121112 123343344445555543222
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHH-HHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccCCh
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVG-ILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPDTP 226 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G-~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~ 226 (355)
.........|.+|+++|+++.++.+....+| ..++|.+.+.+.+ +.+|...+++..+..++..+. .+.+||++
T Consensus 363 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 363 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD---FFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHH---hccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2222345679999999999999998877776 5789999999987 457888888776665555444 34566653
No 178
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.09 E-value=5.5e-09 Score=94.36 Aligned_cols=134 Identities=20% Similarity=0.146 Sum_probs=105.4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA-----QAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~ 150 (355)
|++..+.++......++..++.++.|+++||+|+|+.+.++.++..++.++..+. ++++.+++..++.|++.+..
T Consensus 247 g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~ 326 (406)
T PRK15402 247 QLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLA 326 (406)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHH
Confidence 7888889998888888999999999999999999999999888887777666553 35666778888999998887
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHH
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPAL 213 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~ 213 (355)
.+......... ++++|++..+..+....+|..+|+.+++.+.+. .++....+..++.++
T Consensus 327 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~ 385 (406)
T PRK15402 327 NAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG---GGNGLFNLFNLANGL 385 (406)
T ss_pred hhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccC---CchHHHHHHHHHHHH
Confidence 77666555443 458899999999999999999999999998763 344444443333333
No 179
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.07 E-value=9.1e-10 Score=101.82 Aligned_cols=119 Identities=18% Similarity=0.183 Sum_probs=105.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF----AQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|.+..+.++......++..++.++.|++.||+|||+.+.++..+.+++..+..+ ..+++.+....++.|++.+...
T Consensus 287 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~ 366 (485)
T TIGR00711 287 GYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFF 366 (485)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999888888877663 2356677777889999999888
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
+.......+..|+++|+.+.++.+....+|..+|+.+.+.+.+
T Consensus 367 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 367 MPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888999999999999999999999999999888765
No 180
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.05 E-value=4.1e-09 Score=91.21 Aligned_cols=128 Identities=13% Similarity=0.044 Sum_probs=103.4
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
+|++..+.+...+.+..+..+|.++.+++.||+|+|+.+.++..+..++.++....++...+ .+-++.|++.+..+|..
T Consensus 173 ~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~ 251 (310)
T TIGR01272 173 LGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTI 251 (310)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999998888888877666555543332 35557899999999999
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhh
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGA 208 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~ 208 (355)
.+...+..|++ .+.+.++. ....+|..+.|.+.|.+.+ ..+.+..|++.
T Consensus 252 ~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad---~~g~~~a~~v~ 300 (310)
T TIGR01272 252 FSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLAD---CLGIQLAFALP 300 (310)
T ss_pred HHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHH---hccchHHHHHH
Confidence 99988887654 45666665 5667899999999999987 45677777643
No 181
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.04 E-value=9.1e-09 Score=92.40 Aligned_cols=133 Identities=12% Similarity=0.008 Sum_probs=107.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+..+.|++.+...++..+++++.+++.||.++|+++..+.. .++...+.++.++++...+..++.|++.+...+...
T Consensus 237 g~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~ 315 (393)
T PRK11195 237 GITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMN 315 (393)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 8899999999999999999999999999999999988887753 444455556677888778888899999988888888
Q ss_pred hhhhhcCCCCc-ccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHH
Q 041698 156 LYLSEMAPYRF-RGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVP 211 (355)
Q Consensus 156 ~~~~~~~~~~~-r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~ 211 (355)
+.+.+..|++. +|++.++.+....+|..++..+.+.+... ...++..+...+.+
T Consensus 316 ~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 370 (393)
T PRK11195 316 ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKL--GVPVVAVIVGFGLL 370 (393)
T ss_pred HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHH
Confidence 88888766654 79999999999999999999998877542 13455555545544
No 182
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.04 E-value=4.1e-09 Score=86.06 Aligned_cols=149 Identities=13% Similarity=0.035 Sum_probs=109.4
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHhhhccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGA-LLNGFAQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G~~~g~~ 150 (355)
++.+|+|....+.+.+....-.++.+++.|.++|++|++-..+.+..+..+.. ....| +.+.=.....+.|++.+..
T Consensus 292 ~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysll 369 (459)
T KOG4686|consen 292 QKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLL 369 (459)
T ss_pred HHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHH
Confidence 44559999999999999999999999999999999999977766655444433 33333 2233345666778877666
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhh-hHHHHHHHHHHhccc
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGG-AMVPALIITVGSMIL 222 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~~ 222 (355)
.......++...|+++.|++.+..++..++|..+.|++++++.+..+++.|--.|.. .+.+++....+.+.+
T Consensus 370 AcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 370 ACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 555666777888889999999999999999999999999999987765666555553 333344433333333
No 183
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.04 E-value=2.6e-09 Score=93.92 Aligned_cols=147 Identities=17% Similarity=0.242 Sum_probs=124.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
+.+....|.+.+...+.-.+.-.+..++.+|+|.|+.++++.++.++=-++++++++.+.+.+.+.+.|+-.+.......
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCcccchhhH-HHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCC
Q 041698 156 LYLSEMAPYRFRGALNIG-FQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDT 225 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~ 225 (355)
.|+++.+|+|..++...+ ...+..+|..+.+.++|.+.+ +.|.+..|++.+.+.+...+.. +.++++
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd---~~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD---RIGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh---hcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 999999998877676666 467889999999999999988 7889999988888877665554 445443
No 184
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.03 E-value=1e-09 Score=100.38 Aligned_cols=146 Identities=16% Similarity=0.175 Sum_probs=131.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhc--hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFG--RKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
+.+..+.+.+.++..+...++.++.|+++|+.. ++.+..++.+..+++.+.++++++++.++..-.+.|+..|.....
T Consensus 329 g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l 408 (509)
T KOG2504|consen 329 GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSL 408 (509)
T ss_pred CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999987 667778889999999999999999999999999999999999888
Q ss_pred hhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcccc
Q 041698 154 VPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILP 223 (355)
Q Consensus 154 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 223 (355)
....+.|....++-..+.|+.....+++.++||++++.+.+.++ +|...|+..++..++....++..+
T Consensus 409 ~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg--~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 409 TPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG--NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC--CeeeehhhcChHHHHHHHHHHHhH
Confidence 88899999999999999999999999999999999998888665 488888888887777666665555
No 185
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.03 E-value=2.9e-09 Score=108.52 Aligned_cols=134 Identities=14% Similarity=0.119 Sum_probs=111.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh--------------------hHHHH
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA--------------------QAIWM 135 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--------------------~~~~~ 135 (355)
|.+..+.+++.+.+.++.++++++.|+++|+.++++.+..+.++.+++.+..++. ++.+.
T Consensus 257 g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1140)
T PRK06814 257 GGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWR 336 (1140)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHH
Confidence 8899999999999999999999999999999887777766666666655544443 67788
Q ss_pred HHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHH
Q 041698 136 LIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVP 211 (355)
Q Consensus 136 l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~ 211 (355)
++++.++.|++.+...+...+++.+.+|+++||+++++.+....+|..+++++.+.+... ..++...+++.+..
T Consensus 337 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~--~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 337 ILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL--GFSIPWIILFIALA 410 (1140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh--ccCHHHHHHHHHHH
Confidence 888899999999999999999999999999999999999999999999999999888642 23566665544443
No 186
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.03 E-value=1.8e-09 Score=93.16 Aligned_cols=141 Identities=19% Similarity=0.212 Sum_probs=112.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh--chhHHH-HHHHHHHHHHHHHHHHhh--HHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQF--GRKLSM-FFGGILFLAGALLNGFAQ--AIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~--Grr~~l-~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~ 150 (355)
|+|..+.++..+.+=++...|++++|+++||+ |||... ++.+++..++.+..-.++ |+++..++-++.|+..-+.
T Consensus 284 ~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGP 363 (448)
T COG2271 284 GFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGP 363 (448)
T ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999995 777655 444444444444444554 5688888999999987776
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHH-HHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITV-GILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS 219 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 219 (355)
.-..-....|..|++--|.+.|+...+..+ |...+....+.+.+ .+||...|++..+.+++..+..
T Consensus 364 qmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d---~~gW~g~Fi~~~~~a~l~~lll 430 (448)
T COG2271 364 QMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIAD---TWGWDGGFIVLSIAALLAILLL 430 (448)
T ss_pred HHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEe---cCCCcchHHHHHHHHHHHHHHH
Confidence 767777788999999999999999999888 88888888888777 5789998887766666554443
No 187
>PRK10054 putative transporter; Provisional
Probab=99.03 E-value=2.4e-09 Score=96.21 Aligned_cols=147 Identities=8% Similarity=-0.002 Sum_probs=116.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA-QAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
+.+....+.+.+.+.+.....+++.|++.||+++|+.+..+..+..++.....+. ++.+.++++.++.|++.+...|..
T Consensus 240 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~ 319 (395)
T PRK10054 240 DFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGE 319 (395)
T ss_pred chHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhH
Confidence 5566777888888888888888999999999999999999988888888777664 577777888899999998888888
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHH-HhccccCCh
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITV-GSMILPDTP 226 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~ 226 (355)
..++.+..|++.|++..+... ...+|..+||.+++.+.+ +.+....|++.+....+..+ ......|+|
T Consensus 320 ~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (395)
T PRK10054 320 YMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILT---TLPPWSLFVILALAIVAAWLLMLKGMRARP 388 (395)
T ss_pred HHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHH---HcChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence 899999999999999888655 556899999999999988 55677777766555443333 334455554
No 188
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.02 E-value=3e-09 Score=98.48 Aligned_cols=119 Identities=16% Similarity=0.071 Sum_probs=106.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHhhhccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA---QAIWMLIVGRLLLGFGIGFANQ 152 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~ 152 (355)
|.|..+.+.....+.++..++.++.|++.||+|+|+.+..+.++.+++.++.... ++.+...+..++.|++.|...+
T Consensus 291 g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~ 370 (495)
T PRK14995 291 GLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALL 370 (495)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHH
Confidence 8899999999999999999999999999999999999999988888777665442 4566677788999999999999
Q ss_pred chhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 153 SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
.....+.+..|+++++.+.++.+....+|..+|+.+.+.+.+
T Consensus 371 ~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 371 ASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999888754
No 189
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.02 E-value=3e-09 Score=94.28 Aligned_cols=104 Identities=13% Similarity=0.153 Sum_probs=90.1
Q ss_pred cCCcchhHHHHHHHH-HHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh-----------hHHHHHHHHHHHh
Q 041698 76 QYDSETLTMFTSSLY-LAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA-----------QAIWMLIVGRLLL 143 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~-l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----------~~~~~l~~~r~l~ 143 (355)
|++.++.+.+.++.. ++..++.+++|++.||+|||+.+.++.++.+++..+..+. ++.+.+..+.++.
T Consensus 240 g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (356)
T TIGR00901 240 GFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLE 319 (356)
T ss_pred CCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHH
Confidence 889999998887766 6788999999999999999999998888888777655543 4567788889999
Q ss_pred hhcccccccchhhhhhhcCCCCcccchhhHHHHHHH
Q 041698 144 GFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSIT 179 (355)
Q Consensus 144 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 179 (355)
+++.+...+...+++.|.+|+++|++.+++.+...+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 320 AVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 999999999999999999999999999999887654
No 190
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.02 E-value=1.1e-08 Score=91.21 Aligned_cols=149 Identities=19% Similarity=0.306 Sum_probs=118.3
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh-hHHHHHHH----HHHHhhhcccccc
Q 041698 77 YDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA-QAIWMLIV----GRLLLGFGIGFAN 151 (355)
Q Consensus 77 ~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~----~r~l~G~~~g~~~ 151 (355)
.+....+.+.+...++-.+.-.+.+++..|+|.|+++.++.+..++=..+.+.. ++.+...+ ...++|+..+...
T Consensus 240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~ 319 (400)
T PF03825_consen 240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFH 319 (400)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHH
Confidence 667777888888888899999999999999999999999999999988888877 45444333 3557999999999
Q ss_pred cchhhhhhhcCCCCcccchhhHHHH-HHHHHHHHHHHHHHHhhcCCC---ccchHHHHhhhHHHHHHHHHHh-ccccCC
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQL-SITVGILIANVLNYFFNKIHG---GWGWRLSLGGAMVPALIITVGS-MILPDT 225 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~G~~~~~~i~~~~~~~~~---~~~w~~~~~~~~~~~~~~~~~~-~~~~e~ 225 (355)
.+...++.+..|++.|+++.+++.. ..++|..+|..++|.+.+..+ ...|...+.+.+.+.++..+.+ ++++|+
T Consensus 320 ~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 320 AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9999999999999999999998776 468999999999999987432 1345566666666655554443 334443
No 191
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.01 E-value=3.8e-09 Score=97.15 Aligned_cols=146 Identities=18% Similarity=0.092 Sum_probs=98.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHH--------HHHHHHH--HHHHHHHHH-hhHHHHHHHHHHHhh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSM--------FFGGILF--LAGALLNGF-AQAIWMLIVGRLLLG 144 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l--------~~~~~~~--~~~~~~~~~-~~~~~~l~~~r~l~G 144 (355)
|.+..+.+++.++..++..++.++.|+++||+++|+.. ..+.... ++..++... ..+.+..+++-.+.+
T Consensus 293 g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 372 (465)
T TIGR00894 293 RVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLAN 372 (465)
T ss_pred CcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 88999999999999999999999999999998755221 1111111 111111122 223444445555556
Q ss_pred hcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccc
Q 041698 145 FGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMIL 222 (355)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 222 (355)
.+.+...+.......|..|+ .+|.+.++.+....+|..++|.+.+.+.+.....+|+..|.+.++..++..+...++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 373 AVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred HHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence 55555555555555676654 789999999999999999999999988763322358899988887777666555444
No 192
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.01 E-value=1.1e-08 Score=91.57 Aligned_cols=140 Identities=11% Similarity=0.125 Sum_probs=102.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNG-FAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
|.+..+.+++.+...++..++.++.|++.||+|+|+.+..+..+.+++.++.. ..++.+..++..++.+.+.....+..
T Consensus 231 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 310 (382)
T PRK10091 231 GFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPL 310 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHH
Confidence 88999999999999999999999999999999999999998888887776554 34555666666666666655444444
Q ss_pred hh-hhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh
Q 041698 155 PL-YLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS 219 (355)
Q Consensus 155 ~~-~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 219 (355)
.. ...+..+++.++.. .......+|..+||.+++.+.+.. .+|+..+.+.+...++.....
T Consensus 311 ~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~--~~~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 311 QILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLG--LAYNYVALPAALLSFAAMSSL 372 (382)
T ss_pred HHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcc--cCcchHHHHHHHHHHHHHHHH
Confidence 43 33444444444443 346678899999999999988742 468888887776655544443
No 193
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.00 E-value=3.4e-08 Score=88.40 Aligned_cols=127 Identities=19% Similarity=0.310 Sum_probs=97.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA-----QAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~ 150 (355)
|.+..+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++.++..+. ++...+.+..++.|++.+..
T Consensus 238 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 317 (385)
T TIGR00710 238 GVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMI 317 (385)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999998888887777666543 23455566678889988888
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHH-HHHHHHHHHHHhhcCCCccchHHHHhh
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITV-GILIANVLNYFFNKIHGGWGWRLSLGG 207 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~i~~~~~~~~~~~~w~~~~~~ 207 (355)
.+....+..|..| ++|+++.++.+..... |.+.++.++ ...+ ..+|...+..
T Consensus 318 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~---~~~~~~~~~~ 370 (385)
T TIGR00710 318 SSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIHG---NTAWPMSLSC 370 (385)
T ss_pred HHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hccc---cChHHHHHHH
Confidence 8888888888876 6789999988766654 555555544 4433 2345544443
No 194
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.00 E-value=1e-08 Score=92.38 Aligned_cols=138 Identities=13% Similarity=0.127 Sum_probs=99.8
Q ss_pred cCCcchhHHHHHHH-HHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHH---HHh-hHHHHHHHHHH----Hhhhc
Q 041698 76 QYDSETLTMFTSSL-YLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLN---GFA-QAIWMLIVGRL----LLGFG 146 (355)
Q Consensus 76 ~~s~~~~~~~~s~~-~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~----l~G~~ 146 (355)
|++..+.+++.+.. .++..++.++.|++.||+|+|+.+.++.++..+..+.. ++. ++.+.+++.-+ ..|++
T Consensus 241 G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 320 (402)
T PRK11902 241 GFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMG 320 (402)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 88999999998665 45689999999999999999999887777766655433 343 45566665554 44555
Q ss_pred ccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc
Q 041698 147 IGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 147 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
.+...+....++.+.+|.++ .+......++|..+++.+++.+.+ ..||+..|.+.++++++..+..+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~---~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 321 TAAFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVE---AYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHH---HhChHHHHHHHHHHHHHHHHHHH
Confidence 55566666667777666554 455566667788777778988888 67899999988887776655543
No 195
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.99 E-value=1e-09 Score=97.78 Aligned_cols=127 Identities=17% Similarity=0.203 Sum_probs=94.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhc-hhHH-HHHHH-HHHHHHHHHHHH--hhHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFG-RKLS-MFFGG-ILFLAGALLNGF--AQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-rr~~-l~~~~-~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~ 150 (355)
|.+..+.++..+.+.++..++.++.|+++||.+ ||+. +.... ....++...... ..+.+..++..++.|+.....
T Consensus 248 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 327 (379)
T TIGR00881 248 GFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGP 327 (379)
T ss_pred CCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhh
Confidence 889999999999999999999999999999864 3332 22222 122222222222 235556666677777766566
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHH
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSL 205 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~ 205 (355)
.+....+..|..|+++|+++.++.+....+|..++|.+.+.+.+ +.||++.|
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~f 379 (379)
T TIGR00881 328 QMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD---GFGWAGAF 379 (379)
T ss_pred hHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH---hhcccccC
Confidence 66667788999999999999999999999999999999999988 56787653
No 196
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.99 E-value=4.4e-09 Score=95.04 Aligned_cols=134 Identities=10% Similarity=0.051 Sum_probs=90.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLS-MFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~-l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
+.+..+.+...+...++..++.++.|+++||++||+. +....++.+++..+.....+....+++-.+.+++.....+..
T Consensus 275 ~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 354 (412)
T TIGR02332 275 GSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIF 354 (412)
T ss_pred CCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHH
Confidence 5577888999999999999999999999999997764 333433433333222222222222222222233322233334
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHH
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVP 211 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~ 211 (355)
.....|.+|+++|+.+.++.+....+|.+++|.+.+.+.+..+ +|++.+++.++.
T Consensus 355 ~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g--~~~~~~~~~~~~ 409 (412)
T TIGR02332 355 WTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG--SFNSGLWFVAAL 409 (412)
T ss_pred HhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC--CCchhHHHHHHH
Confidence 4555678899999999999999999999999999999887433 588877765543
No 197
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.97 E-value=2.4e-08 Score=88.67 Aligned_cols=141 Identities=11% Similarity=0.044 Sum_probs=93.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhch---hHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGR---KLSMFF-GGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr---r~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|.+.. .+...+...+...++ .++++||..| |+.... ..++.++.....++..+.+..++.-++.|++.....
T Consensus 223 g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 298 (368)
T TIGR00903 223 GLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAY 298 (368)
T ss_pred CCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhH
Confidence 55543 455555555554444 4677777654 333332 344444444444555555555556667777777777
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCC
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDT 225 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~ 225 (355)
+...++.+|.+|++.|++++++.+....+|..++|.+.+.+.. +-+..|.+.+++.++..+....++++
T Consensus 299 ~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-----~~~~~f~~~~~~~~i~~~~~~~~~~~ 367 (368)
T TIGR00903 299 AIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-----SAEAYFTFLAILITIAFAIALLLPND 367 (368)
T ss_pred HHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 7788899999999999999999999999999999988887763 45666776666666655544444543
No 198
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.96 E-value=1.1e-08 Score=88.14 Aligned_cols=133 Identities=28% Similarity=0.389 Sum_probs=112.2
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhhhcccccccchhhh
Q 041698 80 ETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQA--IWMLIVGRLLLGFGIGFANQSVPLY 157 (355)
Q Consensus 80 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~g~~~~~~~~~ 157 (355)
...++..+.+.++..++.++.|.++||+|||+.+..+.....++.++..+..+ .+.+++.|+++|++.+...+....+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 57899999999999999999999999999998888888776666677777665 9999999999999999999999999
Q ss_pred hhhcCCC-CcccchhhHHHH-HHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHH
Q 041698 158 LSEMAPY-RFRGALNIGFQL-SITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPAL 213 (355)
Q Consensus 158 ~~~~~~~-~~r~~~~~~~~~-~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~ 213 (355)
+.|+.|+ ++|+...+.... ...+|..+++.+++.+... ...+||..|........
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 175 (338)
T COG0477 119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLAALLGL 175 (338)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence 9999987 678888888888 5888889998888777654 34689997766655543
No 199
>PRK09848 glucuronide transporter; Provisional
Probab=98.93 E-value=2.3e-08 Score=91.55 Aligned_cols=119 Identities=14% Similarity=0.174 Sum_probs=97.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHhhhcccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA--QAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
|.+....++......++..++.++.+++.||+|+|+.+.++.++.+++.++..+. ++++.+.+..++.|+|.+...+.
T Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~ 339 (448)
T PRK09848 260 NDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTV 339 (448)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555567788999999999999999999999999888888777664 36777777888899999999999
Q ss_pred hhhhhhhcCCCC-------cccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 154 VPLYLSEMAPYR-------FRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 154 ~~~~~~~~~~~~-------~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
..+...|..+.+ ++|...++.+....+|..+++.+.+.+.+
T Consensus 340 ~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 340 MWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred HHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998887654 34888999999999999999998888754
No 200
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.92 E-value=1.3e-07 Score=89.19 Aligned_cols=144 Identities=16% Similarity=0.258 Sum_probs=117.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHhhhc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQ-FGRKLSMFFGGILFLAGALLNGFAQ--------AIWMLIVGRLLLGFG 146 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~--------~~~~l~~~r~l~G~~ 146 (355)
|++......+...+....-+..+++|.++|+ +||++.++++.++..++.++.++.. .....+++-.+.++|
T Consensus 19 g~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G 98 (654)
T TIGR00926 19 GFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALG 98 (654)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhh
Confidence 8888888999999888888999999999997 6999999999999999998877642 123466777888899
Q ss_pred ccccccchhhhhhhcCCCCc---ccchhhHHHHHHHHHHHHHHHHHHHhhcCC----CccchHHHHhhhHHHHHHHHHHh
Q 041698 147 IGFANQSVPLYLSEMAPYRF---RGALNIGFQLSITVGILIANVLNYFFNKIH----GGWGWRLSLGGAMVPALIITVGS 219 (355)
Q Consensus 147 ~g~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~ 219 (355)
.|++-+...+...|.+++++ |-....+++.+.++|.++++.+..++.+.. ...+|...|.+.++..++.++.+
T Consensus 99 ~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf 178 (654)
T TIGR00926 99 TGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVF 178 (654)
T ss_pred ccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987543 567888999999999999999988886421 12469999988887766655544
No 201
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.92 E-value=3.7e-09 Score=89.50 Aligned_cols=133 Identities=17% Similarity=0.073 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCccc
Q 041698 89 LYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRG 168 (355)
Q Consensus 89 ~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~ 168 (355)
..+.-..|.++.+.+.||+|||+.+..+.+++++..+....+.+-..+.+.-+..-++.++.+.+.++|..|.+|.+-|+
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa 469 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA 469 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence 34667789999999999999999999999999999988877754433333333333334455667889999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCCh
Q 041698 169 ALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTP 226 (355)
Q Consensus 169 ~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~ 226 (355)
...|....+.-+|+++.|+++ ...+ .+-.....+.+...++..++..++|-.+
T Consensus 470 tgvGtcSsmaRIggI~~p~iA-~~~e----~s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 470 TGVGTCSSMARIGGIFSPVIA-MRAE----LSTSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred cchhhhhhHHhhhhhhhhHHH-HHhc----cceeehHHHHHHHHHHHHHHheeeeecc
Confidence 999999999999999999999 3332 2233344555666666666666776443
No 202
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.92 E-value=1.9e-07 Score=84.03 Aligned_cols=147 Identities=17% Similarity=0.151 Sum_probs=110.2
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh---hHHH------HHHHHHHHhhhc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA---QAIW------MLIVGRLLLGFG 146 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~------~l~~~r~l~G~~ 146 (355)
|++..+..++.....+...+..+.+..+.||+|||+.++.+..+..+..+++... .+.. ..+++.++..++
T Consensus 301 G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~ 380 (485)
T KOG0569|consen 301 GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIIS 380 (485)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999999999999999988776653 1211 223444444333
Q ss_pred ccc-cccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-hccccC
Q 041698 147 IGF-ANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-SMILPD 224 (355)
Q Consensus 147 ~g~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e 224 (355)
.+. .-|...-+.+|.+|++.|+.++++.....-++..+-...-..+.+..+ = +.|....+++++..+. ++.+||
T Consensus 381 f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g---~-~~filF~i~~~~~~i~~~~~lPE 456 (485)
T KOG0569|consen 381 FAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG---P-YVFILFVIPLAIFLIYLYRYLPE 456 (485)
T ss_pred hhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---c-hhhHHHHHHHHHHHHHHHHhCcc
Confidence 222 356777888999999999999999888888877776666666655322 2 5666666666655544 567899
Q ss_pred Ch
Q 041698 225 TP 226 (355)
Q Consensus 225 ~~ 226 (355)
++
T Consensus 457 Tk 458 (485)
T KOG0569|consen 457 TK 458 (485)
T ss_pred cC
Confidence 86
No 203
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.88 E-value=7.6e-09 Score=93.61 Aligned_cols=148 Identities=20% Similarity=0.178 Sum_probs=111.7
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh-----chhHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHH
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQF-----GRKLSMFFGGILFLAGALLNGFA----QAIWMLIVGRLL 142 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-----Grr~~l~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l 142 (355)
++++|+++.+.....+...+...+ .++.|.++|.+ .||+-++++.++..++.+..+.. .+.....++-++
T Consensus 17 ~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~l 95 (433)
T PF03092_consen 17 KDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFL 95 (433)
T ss_pred HHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHH
Confidence 444599999999888877776654 67889999986 35666677777776666655543 356667777788
Q ss_pred hhhcccccccchhhhhhhcCC--CCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc
Q 041698 143 LGFGIGFANQSVPLYLSEMAP--YRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 143 ~G~~~g~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
..++.........+.+.|... ++.|+...+.......+|.+++..++|.+.+ ..+++..|.+.+++..+..+..+
T Consensus 96 a~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~---~~~~~~~f~i~~~~~~l~~~~~~ 172 (433)
T PF03092_consen 96 ASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLD---SFGPQGVFLISAALPLLMLIVAL 172 (433)
T ss_pred HHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh---cCCCeEEehHHHHHHHHHHHHHH
Confidence 888999999999999999874 3336788888888999999999999999887 56788888887777666555444
Q ss_pred ccc
Q 041698 221 ILP 223 (355)
Q Consensus 221 ~~~ 223 (355)
++.
T Consensus 173 ~~~ 175 (433)
T PF03092_consen 173 FLL 175 (433)
T ss_pred Hhh
Confidence 443
No 204
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.86 E-value=2.9e-08 Score=91.44 Aligned_cols=117 Identities=12% Similarity=0.150 Sum_probs=93.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHhhhccccccc
Q 041698 78 DSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF-----AQAIWMLIVGRLLLGFGIGFANQ 152 (355)
Q Consensus 78 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~ 152 (355)
+....+++.+...++..++.+++++++||+|+|+.+.++.++.+++.+...+ .++.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777889999999999999999999999888877766655432 34567777788889999998898
Q ss_pred chhhhhhhcCCC-------CcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 153 SVPLYLSEMAPY-------RFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 153 ~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
...++++|..+. +..|...+......-+|..+++.+.+.+.+
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999988652 222568889999999999999999888765
No 205
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.86 E-value=1.6e-08 Score=92.76 Aligned_cols=151 Identities=12% Similarity=0.063 Sum_probs=119.2
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHh
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF----------AQAIWMLIVGRLLL 143 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~l~ 143 (355)
++|+++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++...... .++.+.++..-++.
T Consensus 282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~ 361 (468)
T TIGR00788 282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIA 361 (468)
T ss_pred cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHH
Confidence 45999999999999999999999999999999999999999999999988755431 13444566677888
Q ss_pred hhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC----ccchHHHHh-hhHHHHHHHHHH
Q 041698 144 GFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHG----GWGWRLSLG-GAMVPALIITVG 218 (355)
Q Consensus 144 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~----~~~w~~~~~-~~~~~~~~~~~~ 218 (355)
+++.+....+...++.+..|+++++...++..+..++|..+++.+++.+.+..+ +++.++... +..+..++.+..
T Consensus 362 ~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~ 441 (468)
T TIGR00788 362 EVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPL 441 (468)
T ss_pred HHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 999889999999999999999999999999999999999999999999887432 233333333 223333333334
Q ss_pred hccccC
Q 041698 219 SMILPD 224 (355)
Q Consensus 219 ~~~~~e 224 (355)
.+++|+
T Consensus 442 ~~llP~ 447 (468)
T TIGR00788 442 LHLLPR 447 (468)
T ss_pred HHhCCC
Confidence 456786
No 206
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.86 E-value=9.4e-08 Score=85.89 Aligned_cols=114 Identities=11% Similarity=0.156 Sum_probs=79.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+..+.+.+.+...++..++.++.+++.||+|||+.+.++..+..++.++..+.++.+..+..-.+.+.+.+...+.
T Consensus 235 g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-- 312 (392)
T PRK10473 235 GFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGV-- 312 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--
Confidence 888889999999999999999999999999999999999999988888888777666554444444444443333332
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
....+..|.++|+ +.......++..+++.+++++.+
T Consensus 313 ~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~ 348 (392)
T PRK10473 313 AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAA 348 (392)
T ss_pred HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334455555553 33334445566666666666655
No 207
>PRK10133 L-fucose transporter; Provisional
Probab=98.85 E-value=3.5e-08 Score=89.76 Aligned_cols=130 Identities=8% Similarity=-0.037 Sum_probs=103.4
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
+|++..+.++....+.++..++.++.|++.||+|+|+++..+.++..++..+..+.++.+ .+..-.+.|++.+..+|..
T Consensus 290 ~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~P~~ 368 (438)
T PRK10133 290 PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQYPTI 368 (438)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999998888777766666655532 3456678899999999999
Q ss_pred hhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccc-hHHHHhhhHH
Q 041698 155 PLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWG-WRLSLGGAMV 210 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~-w~~~~~~~~~ 210 (355)
.+...|..++ +.+.+.++... ..+|..++|.+.+.+.+ ..| -|..|++..+
T Consensus 369 ~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~---~~g~~~~~~~v~~~ 420 (438)
T PRK10133 369 FSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSD---AAGNIPTAELIPAL 420 (438)
T ss_pred HHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHH---hccchHHHHHHHHH
Confidence 9999998765 35677777764 44677888888888877 344 5666664443
No 208
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.85 E-value=2e-07 Score=79.14 Aligned_cols=142 Identities=18% Similarity=0.126 Sum_probs=115.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccch
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQF-GRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
|+|..+.|++.+...+.+...++....+.+|. .+|+..+....+..++.+.+.+.+.-..+.- -++.|++.|..++..
T Consensus 239 G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~la 317 (395)
T COG2807 239 GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLA 317 (395)
T ss_pred CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHH
Confidence 99999999999999999999999999999975 5778888888888888888888765444433 489999999999999
Q ss_pred hhhhhhcCCCCcc-cchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc
Q 041698 155 PLYLSEMAPYRFR-GALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 155 ~~~~~~~~~~~~r-~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
..++.+..+..++ ++..++.+....+=..+||.+.|++-+..+ +|+......+...++..+.-+
T Consensus 318 L~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g--sw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 318 LTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG--SWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred HHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC--ChHHHHHHHHHHHHHHHHHHh
Confidence 9999887765444 677777777777778889999999988776 788888777666665554433
No 209
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.85 E-value=6.6e-08 Score=87.93 Aligned_cols=116 Identities=22% Similarity=0.328 Sum_probs=104.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHhhhcccccccchhhh
Q 041698 80 ETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ--AIWMLIVGRLLLGFGIGFANQSVPLY 157 (355)
Q Consensus 80 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~ 157 (355)
...+.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++..+.+ +.+.+++.-++.|++.+...+...++
T Consensus 260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 5778888899999999999999999999999999999999999999988886 99999999999999999999999999
Q ss_pred hhhcCCC-------CcccchhhHHHHHHHHHHHHHHHHHHHhhcC
Q 041698 158 LSEMAPY-------RFRGALNIGFQLSITVGILIANVLNYFFNKI 195 (355)
Q Consensus 158 ~~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~ 195 (355)
++|..+. ++.|...+.......+|..+++.+.+.+.+.
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~ 384 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL 384 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9988863 2238889999999999999999988887653
No 210
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.83 E-value=3e-07 Score=82.13 Aligned_cols=114 Identities=12% Similarity=0.191 Sum_probs=82.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF----AQAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|++..+.+++.+...++..++.++.|++.||+|||+.+.++..+..+..+.... ..+++.+.++-.+.+.+.+...
T Consensus 226 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (377)
T PRK11102 226 GVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMIS 305 (377)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 889999999999999999999999999999999999999888765554433222 2244555555545555555555
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHH-HHHHHHHHHHHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLS-ITVGILIANVLNY 190 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~G~~~~~~i~~ 190 (355)
.....++.|..| ++|+++.+..... ..+|..+++.++.
T Consensus 306 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 306 SNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666667777765 7888888876543 4567777776654
No 211
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.82 E-value=5.3e-08 Score=85.91 Aligned_cols=111 Identities=23% Similarity=0.387 Sum_probs=97.9
Q ss_pred cCC-cchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHhhhcccccc
Q 041698 76 QYD-SETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA---QAIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s-~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~ 151 (355)
|.+ ..+.+.+.+...++..++.++.|+++||+|+|+...+......++.+...+. ++....++.-++.|++.+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 317 (352)
T PF07690_consen 238 GFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVF 317 (352)
T ss_dssp HCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 788 7899999999999999999999999999999888877777777776665543 355777778888999999999
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIAN 186 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~ 186 (355)
+....++.|..|+++|+++.++.....++|..++|
T Consensus 318 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 318 PILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999987
No 212
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.80 E-value=5.3e-08 Score=84.28 Aligned_cols=138 Identities=12% Similarity=0.045 Sum_probs=109.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh-------H----HHHHHHHHHHhh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ-------A----IWMLIVGRLLLG 144 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-------~----~~~l~~~r~l~G 144 (355)
+.+..+.+.....+.+...+..+.+|+++||+|.+|++.......+++..+..+.. + +..++...+..|
T Consensus 250 g~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G 329 (417)
T COG2223 250 GLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAG 329 (417)
T ss_pred CCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999999999999998888887777653 2 344556667777
Q ss_pred hcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc
Q 041698 145 FGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
+|+|..+- .+..++| ++-|.+.++.....++|+..-|..-+...+.++ .+...|++.....+++.+..+
T Consensus 330 ~GnGsvfk----~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg--~~~~~f~~~~~~~~~a~v~~~ 398 (417)
T COG2223 330 LGNGSVFK----MIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG--SYTGAFMLLLAFYLVALVLTW 398 (417)
T ss_pred cCcchhee----echHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHH
Confidence 77775544 4555554 367999999999999999999988888877554 588888887777666655443
No 213
>PRK11043 putative transporter; Provisional
Probab=98.80 E-value=3.9e-07 Score=82.13 Aligned_cols=118 Identities=11% Similarity=0.033 Sum_probs=93.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH---H--hhHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNG---F--AQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~---~--~~~~~~l~~~r~l~G~~~g~~ 150 (355)
|++..+.++......++..++.++.+++.||+|+|+.+....+..+++.+... . .++.+.+++...+.|++.+..
T Consensus 234 g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (401)
T PRK11043 234 GYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAI 313 (401)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Confidence 88999999988888899999999999999999999877666555555443322 2 345566666777888888888
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
.+.......|..| ++|+++.++.+.....+...++.+.+.+.+
T Consensus 314 ~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 314 YPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred HHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 8888888777775 579999999999888888888888888765
No 214
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.78 E-value=1.8e-07 Score=84.31 Aligned_cols=133 Identities=9% Similarity=-0.093 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH-Hh-----hHHHHHHHHHHHhhhcccccccchhhhhh
Q 041698 86 TSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNG-FA-----QAIWMLIVGRLLLGFGIGFANQSVPLYLS 159 (355)
Q Consensus 86 ~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~~~ 159 (355)
..+..+...+..+++|+++||+|+|+++.++.+...++..... .. .+++.+.+..+...++.|.-......++.
T Consensus 292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip 371 (462)
T PRK15034 292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA 371 (462)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence 3445677888999999999999999999999887777764322 22 24555555544444444444445566666
Q ss_pred hcCCC---------------------CcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH
Q 041698 160 EMAPY---------------------RFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG 218 (355)
Q Consensus 160 ~~~~~---------------------~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 218 (355)
+.+|+ ++-|.+.|+......+|+.+-|.+-+...+..+ ++...|++..+..+++...
T Consensus 372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g--~~~~~~~~~~~~~~~~~~~ 449 (462)
T PRK15034 372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG--SPVGAMKVFLIFYIVCVLL 449 (462)
T ss_pred HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHH
Confidence 66653 134678888999999999999977777666544 5777777777666655554
Q ss_pred hc
Q 041698 219 SM 220 (355)
Q Consensus 219 ~~ 220 (355)
.+
T Consensus 450 ~w 451 (462)
T PRK15034 450 TW 451 (462)
T ss_pred HH
Confidence 33
No 215
>PRK09669 putative symporter YagG; Provisional
Probab=98.72 E-value=5.5e-07 Score=82.35 Aligned_cols=115 Identities=18% Similarity=0.298 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHhhhcccccccchhhhh
Q 041698 81 TLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF--AQAIWMLIVGRLLLGFGIGFANQSVPLYL 158 (355)
Q Consensus 81 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~~ 158 (355)
..+.+.....++..++.+++++++||+|+|+.+.++.++.+++.....+ .++.+.+++..++.|++.+...+...+.+
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677888899999999999999999999888766654443332 35777788888999999999999999999
Q ss_pred hhcCCC-------CcccchhhHHHHHHHHHHHHHHHHHHHhhcC
Q 041698 159 SEMAPY-------RFRGALNIGFQLSITVGILIANVLNYFFNKI 195 (355)
Q Consensus 159 ~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~ 195 (355)
+|..+. +..|...+.......+|..+++.+++.+.+.
T Consensus 345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~ 388 (444)
T PRK09669 345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW 388 (444)
T ss_pred HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988752 2225677888888899999999999887663
No 216
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.71 E-value=2.5e-07 Score=85.07 Aligned_cols=135 Identities=19% Similarity=0.195 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhch-----hHHH--HHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHhhh
Q 041698 82 LTMFTSSLYLAALLSSLVASRVTRQFGR-----KLSM--FFGGILFLAGALLNGF---------AQAIWMLIVGRLLLGF 145 (355)
Q Consensus 82 ~~~~~s~~~l~~~~~~~~~g~l~dr~Gr-----r~~l--~~~~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~ 145 (355)
.+++.+...+...+.+++..++-.+.+| +... .+|.++.+++.+..++ ..|+++++...++.++
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 6788888888888888776544333333 3333 7788888888777764 4689999999999999
Q ss_pred cccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh
Q 041698 146 GIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS 219 (355)
Q Consensus 146 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 219 (355)
|+....|...+++.+..|++.||+.++++..+..+|..+++.+...... ..+|...|...++..++..+..
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 464 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAV---PQGVTGVFGKIGLVTLLVGVVM 464 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998887765 3467777776666655544443
No 217
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.68 E-value=2.5e-07 Score=85.62 Aligned_cols=135 Identities=12% Similarity=0.086 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHHHHHHhh----hhhhhhhchhHHHHHHHHHHHHHHHHHHHhhH---------HHHHHHHHHHhhhccc
Q 041698 82 LTMFTSSLYLAALLSSLVA----SRVTRQFGRKLSMFFGGILFLAGALLNGFAQA---------IWMLIVGRLLLGFGIG 148 (355)
Q Consensus 82 ~~~~~s~~~l~~~~~~~~~----g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~---------~~~l~~~r~l~G~~~g 148 (355)
.++..+...+...+..++. +++.||++.++.+.++.++.+++.+..+++.+ .++++..+++.|+++.
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 4555566665555555555 67777777778899999999999988877765 4678899999999999
Q ss_pred ccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc---CCC----ccchHHHHhhhHHHHHHHH
Q 041698 149 FANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK---IHG----GWGWRLSLGGAMVPALIIT 216 (355)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~---~~~----~~~w~~~~~~~~~~~~~~~ 216 (355)
...|...+++.+..|++.||+.+|.+..+..+|..++..+...... ..+ ..+....|...++.+++..
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a 472 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIA 472 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888888888777754321 000 1135667766666554433
No 218
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=3.8e-08 Score=84.32 Aligned_cols=140 Identities=17% Similarity=0.107 Sum_probs=111.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhc--hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFG--RKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
..+..+.|...--..+.+.++..+.|.++||++ |-.....+++..++++....+++++.++++-++..|++.+.....
T Consensus 302 ~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~das 381 (464)
T KOG3764|consen 302 FTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADAS 381 (464)
T ss_pred cCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHH
Confidence 445568888888888999999999999999999 655556777777777888889999999999999888887777655
Q ss_pred hhhhhhhcCCCC------cccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH
Q 041698 154 VPLYLSEMAPYR------FRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG 218 (355)
Q Consensus 154 ~~~~~~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 218 (355)
..-.+.+....+ --|...++...++++|..+||.+++.+.+ ..|++|.-.+.++..++....
T Consensus 382 l~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~---~iGF~wl~~iig~~n~iyapv 449 (464)
T KOG3764|consen 382 LIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVE---AIGFEWLMTIIGILNLIYAPV 449 (464)
T ss_pred HhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhee---ehhHHHHHHHHHHHHHHHHHH
Confidence 555544444332 34788999999999999999999999988 678999888777776654433
No 219
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.61 E-value=2.7e-06 Score=76.53 Aligned_cols=118 Identities=19% Similarity=0.174 Sum_probs=91.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHH-HHHHHHHHHHH--hhHHHHHHHHHHHhhhccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGI-LFLAGALLNGF--AQAIWMLIVGRLLLGFGIGFANQ 152 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~-~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~ 152 (355)
|.+..+.+++.....++..+++++.+++.||++++........ ...+....... ..+.+.+++..++.|++.+...+
T Consensus 239 g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 318 (394)
T PRK11652 239 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFP 318 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999984433322222 22122122222 23567778888999999999999
Q ss_pred chhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 153 SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
....+..|..| ++++...++......+|..+++.+++.+..
T Consensus 319 ~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 319 LATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred HHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999886 578999999999999999999999988765
No 220
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.60 E-value=1.9e-07 Score=84.60 Aligned_cols=151 Identities=16% Similarity=0.125 Sum_probs=104.3
Q ss_pred chhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhch---------hHHHHHHHHHH
Q 041698 50 MPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGR---------KLSMFFGGILF 120 (355)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr---------r~~l~~~~~~~ 120 (355)
+|.|.++-+ |.+..+.|++.++..+...+..+++|.++||.-+ |..=.++....
T Consensus 281 ~PtY~~~VL-----------------~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ 343 (466)
T KOG2532|consen 281 LPTYLKEVL-----------------GFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGP 343 (466)
T ss_pred hhHHHHHHh-----------------CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHH
Confidence 788887765 9999999999999999999999999999998754 22224444444
Q ss_pred HHHHHHHHHhhH--H----HHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 121 LAGALLNGFAQA--I----WMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 121 ~~~~~~~~~~~~--~----~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
+++.++.++.++ . ..+.+.-.+.|+..++ ...-..+.. +++-+.++++.+....+..+++|.+.+.+..
T Consensus 344 ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~G----f~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~ 418 (466)
T KOG2532|consen 344 AVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISG----FYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVT 418 (466)
T ss_pred HHHHHeeeecCCCcchHHHHHHHHHHHHcccchhh----hHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence 444555555542 1 2222222333333222 222223333 4667999999999999999999999999985
Q ss_pred CCCccchHHHHhhhHHHHHHHHHHhccc
Q 041698 195 IHGGWGWRLSLGGAMVPALIITVGSMIL 222 (355)
Q Consensus 195 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 222 (355)
......||++|++.+++.++..+.+.++
T Consensus 419 ~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 419 DNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred CCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 2224689999999988877766555443
No 221
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=98.59 E-value=5.1e-06 Score=75.16 Aligned_cols=117 Identities=11% Similarity=0.142 Sum_probs=93.1
Q ss_pred CcchhHHHHHHHHHHHHHH-HHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh----h---------------------
Q 041698 78 DSETLTMFTSSLYLAALLS-SLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA----Q--------------------- 131 (355)
Q Consensus 78 s~~~~~~~~s~~~l~~~~~-~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~----~--------------------- 131 (355)
+.+.+.++.+...+...+. .++.+++++|++|++++.+....+.....++++. +
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 4478999999888887777 8999999999999999988888777777666654 1
Q ss_pred ------HHHHHHHHHHHhhhccccccc-chhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 132 ------AIWMLIVGRLLLGFGIGFANQ-SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 132 ------~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
+.|...+..+...+-.....+ ....+.+|.++.+|-.|..++...+.++|.++++.+..++.+
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134444555555555555555 677889999999999999999999999999999999888763
No 222
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.58 E-value=8e-07 Score=80.22 Aligned_cols=128 Identities=10% Similarity=-0.028 Sum_probs=96.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhh
Q 041698 78 DSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLY 157 (355)
Q Consensus 78 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 157 (355)
+....+...+.+..+..+|.++++++.||+++|+++.++.++..+..++..+.++... ..+-++.|++.+..+|+..+.
T Consensus 267 ~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl 345 (410)
T TIGR00885 267 TAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGI 345 (410)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4444455666677888999999999999999999999999999998888888776544 566777888889999999999
Q ss_pred hhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC--cc-chHHHHhhh
Q 041698 158 LSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHG--GW-GWRLSLGGA 208 (355)
Q Consensus 158 ~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~--~~-~w~~~~~~~ 208 (355)
..+..+++.+... +...+ ..+|..+.|.+.|.+.+..+ +. +.+..|++.
T Consensus 346 ~~~~~g~~~~~~s-~~l~~-~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~ 397 (410)
T TIGR00885 346 ALKGLGQDTKYGA-AGLVM-AIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILP 397 (410)
T ss_pred HHhhhhhhhhhhH-HHHHH-HHhccchHHHHHHHHHHHhcccccCccchHHHHH
Confidence 9999876543323 33333 34999999999999988321 11 356666553
No 223
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.58 E-value=2e-06 Score=76.87 Aligned_cols=120 Identities=18% Similarity=0.271 Sum_probs=99.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHhhhcccccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ--AIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
|.++....+.......+..++.+++.++++|+|+|+++.++.++.+++.++.-+.+ +.+.+++..++.+++.+...+.
T Consensus 268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l 347 (467)
T COG2211 268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPL 347 (467)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccc
Confidence 55677777888888888889999999999999999999999999999999888865 7888999999999999999998
Q ss_pred hhhhhhhcCC------CCcc-cchhhHHHHHHHHHHHHHHHHHHHhhcC
Q 041698 154 VPLYLSEMAP------YRFR-GALNIGFQLSITVGILIANVLNYFFNKI 195 (355)
Q Consensus 154 ~~~~~~~~~~------~~~r-~~~~~~~~~~~~~G~~~~~~i~~~~~~~ 195 (355)
..+.++|..+ .++| |...+......=+|..++..+.++....
T Consensus 348 ~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~ 396 (467)
T COG2211 348 PWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA 396 (467)
T ss_pred cHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888876654 2223 6777777777788888888777776653
No 224
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=3.2e-06 Score=75.60 Aligned_cols=108 Identities=19% Similarity=0.216 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCC
Q 041698 86 TSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYR 165 (355)
Q Consensus 86 ~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~ 165 (355)
.++.+....+++++.+.+.|+.|.|..+.++......-.+.+-+ .|-+.+++.-.+.|+|.+..+..--.|++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 77888899999999999999999999999999998887776655 44667888999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 166 FRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 166 ~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
.+.+..++.......+.++|..+...+..
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~ 163 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQ 163 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeE
Confidence 99999999999999998888776655543
No 225
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.52 E-value=2.7e-06 Score=64.83 Aligned_cols=117 Identities=20% Similarity=0.234 Sum_probs=98.4
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhh
Q 041698 77 YDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPL 156 (355)
Q Consensus 77 ~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 156 (355)
+++..--.-.++.+....+++++.+.+.+++|.|+.++++.+...+-.... +-++.+.++.+-++.|++.+..++..-.
T Consensus 34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 344444455666777788888999999999999999999999988654443 5577889999999999999999999999
Q ss_pred hhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 157 YLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 157 ~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
++.+..+++.|++..+++......+.++|.++..++.+
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999887776644
No 226
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=98.49 E-value=4.6e-07 Score=60.59 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=60.9
Q ss_pred ccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 041698 71 TNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLI 137 (355)
Q Consensus 71 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~ 137 (355)
+++|.++|..+.+++.++.++||.+|++...++.++..+++.+..+.+...+..+.+++.++.+.+.
T Consensus 18 M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 18 MQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 3455599999999999999999999999999999999999999999999999999999998877653
No 227
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.46 E-value=1.8e-07 Score=83.27 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=122.5
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
+-.+...|........+-++.-++.+++.+++|+-+++.+++....+=.+..++.+|.|+.+-..+++|+..+.++.+..
T Consensus 402 ~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~ 481 (618)
T KOG3762|consen 402 GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAII 481 (618)
T ss_pred CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHH
Confidence 55666677777777888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCcccchhhHHH-HHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc
Q 041698 156 LYLSEMAPYRFRGALNIGFQ-LSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~-~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
+|++...||+.|..+.++.. ...++|.-+|.++++.+.+ ..+=|..|.+.++.+++.++...
T Consensus 482 sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~---~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 482 SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE---RFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe---eehhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888655 4458888899999999988 56678888877777666555443
No 228
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.42 E-value=1.5e-06 Score=77.24 Aligned_cols=105 Identities=18% Similarity=0.119 Sum_probs=78.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH--hh--HHHHHHHHHHHhhhcccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF--AQ--AIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~--~~--~~~~l~~~r~l~G~~~g~~~ 151 (355)
|.+..+.+.+.+...++..++.++.|+++||+|||+.+..+..+...+..+..+ .+ +.+.+.+.-.+.+++.|...
T Consensus 257 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 336 (366)
T TIGR00886 257 GLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGN 336 (366)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcccc
Confidence 888999999999999999999999999999999998888777776666655543 22 55554455555555555555
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVG 181 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 181 (355)
+.....+.+..| ++++...++.....++|
T Consensus 337 ~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 337 GSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred chhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 566667777776 68899999888766554
No 229
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.41 E-value=1.7e-06 Score=79.71 Aligned_cols=138 Identities=16% Similarity=0.172 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhchhHH-------HHHHHHHHHHHHHHHH-----Hh-----hHHHHHHHHHHHhh
Q 041698 82 LTMFTSSLYLAALLSSLVASRVTRQFGRKLS-------MFFGGILFLAGALLNG-----FA-----QAIWMLIVGRLLLG 144 (355)
Q Consensus 82 ~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~-------l~~~~~~~~~~~~~~~-----~~-----~~~~~l~~~r~l~G 144 (355)
.+++.+...+...+.+++.+++.||+|+|+. +.+|.++.+++.+..+ ++ .+++.++...++.|
T Consensus 311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g 390 (489)
T PRK10207 311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS 390 (489)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence 4556666777788889999999999999873 6777777776654321 21 35777888999999
Q ss_pred hcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC-------ccchHHHHhhhHHHHHHHHH
Q 041698 145 FGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHG-------GWGWRLSLGGAMVPALIITV 217 (355)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~-------~~~w~~~~~~~~~~~~~~~~ 217 (355)
+|++...+...+++.+..|++.++.+++++.....+|..++..++........ .....+.|...++.+++..+
T Consensus 391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v 470 (489)
T PRK10207 391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV 470 (489)
T ss_pred HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988876632110 01245566665655554444
Q ss_pred Hh
Q 041698 218 GS 219 (355)
Q Consensus 218 ~~ 219 (355)
..
T Consensus 471 ~~ 472 (489)
T PRK10207 471 VM 472 (489)
T ss_pred HH
Confidence 43
No 230
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.39 E-value=2.2e-05 Score=68.52 Aligned_cols=147 Identities=16% Similarity=0.146 Sum_probs=121.6
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhh-hhchhHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHhhhcc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTR-QFGRKLSMFFGGILFLAGALLNGF---AQAIWMLIVGRLLLGFGI 147 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~ 147 (355)
.|-||++..+...++..+..|..++....|++.. |.++|+.-.+++...+++..+..+ ..+.+.+-..-++.|++.
T Consensus 236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~ 315 (403)
T PF03209_consen 236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGN 315 (403)
T ss_pred hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence 4456999999999999999999999999999988 678888888888888887755443 467899999999999999
Q ss_pred cccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCC-------CccchHHHHhhhHHHHHHHHHH
Q 041698 148 GFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIH-------GGWGWRLSLGGAMVPALIITVG 218 (355)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~-------~~~~w~~~~~~~~~~~~~~~~~ 218 (355)
|.+.....+.+.+...+++-|..+|.|.....++..++..+++.+.+.. ...+|-.+|.+.++..++.+.+
T Consensus 316 G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 316 GLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred hHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888899999999999999999999998876521 2346777777766655544433
No 231
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.33 E-value=1.3e-06 Score=76.51 Aligned_cols=137 Identities=15% Similarity=0.039 Sum_probs=103.4
Q ss_pred HHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHhhh-cccccccchhhhhhhcCCCC
Q 041698 91 LAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQA----IWMLIVGRLLLGF-GIGFANQSVPLYLSEMAPYR 165 (355)
Q Consensus 91 l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~----~~~l~~~r~l~G~-~~g~~~~~~~~~~~~~~~~~ 165 (355)
.++..|-.+...+.|+.|||++.+.+.++..+..+..++..| -..+++...+..+ ++-+.......+-+|.+|.+
T Consensus 359 ~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPar 438 (538)
T KOG0252|consen 359 CSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPAR 438 (538)
T ss_pred HccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHH
Confidence 334456777888999999999999999999999988887655 2222222222222 22234556667779999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhcC--CCccchHHHHhhhHHHHHHHHHHhccccCChh
Q 041698 166 FRGALNIGFQLSITVGILIANVLNYFFNKI--HGGWGWRLSLGGAMVPALIITVGSMILPDTPN 227 (355)
Q Consensus 166 ~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~ 227 (355)
-|+..-++..+..-+|++++...-.++.+. ....+.+..+++.+...++..+..+++||+.+
T Consensus 439 vR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 439 VRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred HhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 999999999999999999998877777651 12357889999998888888787888998864
No 232
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.32 E-value=7e-05 Score=69.84 Aligned_cols=147 Identities=16% Similarity=0.109 Sum_probs=93.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHH-------------HHHHHHHHH
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAI-------------WMLIVGRLL 142 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~-------------~~l~~~r~l 142 (355)
+.+... .+...+..+...++..+...+.||+|||+.++.+.....++.++.+..... ..+...-+.
T Consensus 326 g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (513)
T KOG0254|consen 326 GLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLF 404 (513)
T ss_pred CCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHH
Confidence 444333 555666677777888888999999999999999999999999887754221 112222222
Q ss_pred hhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHH--Hhc
Q 041698 143 LGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITV--GSM 220 (355)
Q Consensus 143 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~--~~~ 220 (355)
......+..+....+.+|.+|.+.|+++.++......+...+-...-..+.+ ..++...|...+....+... ..+
T Consensus 405 v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~---~~~~~~~f~~f~~~~~~~~~~fv~~ 481 (513)
T KOG0254|consen 405 IFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITE---ALGIGGTFGYFGGICLLSLIIFVFF 481 (513)
T ss_pred HHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---hccccchHHHHHHHHHHHHHHHheE
Confidence 2223333445555788999999999999888776666555444333333333 11234455555555444444 456
Q ss_pred cccCCh
Q 041698 221 ILPDTP 226 (355)
Q Consensus 221 ~~~e~~ 226 (355)
++||+.
T Consensus 482 ~~pETk 487 (513)
T KOG0254|consen 482 FVPETK 487 (513)
T ss_pred EcccCC
Confidence 789985
No 233
>PRK11462 putative transporter; Provisional
Probab=98.27 E-value=3.7e-05 Score=70.57 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=77.7
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHhhhcccccccchhhh
Q 041698 80 ETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ--AIWMLIVGRLLLGFGIGFANQSVPLY 157 (355)
Q Consensus 80 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~ 157 (355)
...+.+.+.+.++.+++.+++++++||+|+|+.+..+..+.++..++..+.+ +...+++.-++.|++.+...+...++
T Consensus 263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m 342 (460)
T PRK11462 263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVM 342 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788889999999999999999999988766555444444333322 23334445566777776666666667
Q ss_pred hhhcCCC-----Ccc--cchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 158 LSEMAPY-----RFR--GALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 158 ~~~~~~~-----~~r--~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
+.|..+. .+| |...+.......+|..+++.+++.+..
T Consensus 343 ~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 343 MSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred HHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766542 123 455667677888888888888877764
No 234
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.26 E-value=1.1e-05 Score=69.76 Aligned_cols=125 Identities=11% Similarity=0.137 Sum_probs=105.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+..+.+...+.+..+.++|.+++.++..|+...|.+.+..+...+-++..+++++...+ .+-++.|+..+..+|+..
T Consensus 268 g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~-~~l~~ig~F~simfPTIf 346 (422)
T COG0738 268 GLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVAL-YALFLIGLFNSIMFPTIF 346 (422)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHH-HHHHHHHHHhHHHHHHHH
Confidence 8899999999999999999999999999999999999999998888888888898885544 445667999999999999
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHh
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLG 206 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~ 206 (355)
+...+..+ + -....+..-+...+|+++-|.+-|++.+ ..+-+..+.
T Consensus 347 slal~~l~-~-~ts~~s~~l~maivGGAiiP~l~G~i~d---~~g~~~~~~ 392 (422)
T COG0738 347 SLALKNLG-E-HTSVGSGLLVMAIVGGAIIPPLQGVIAD---MFGIQLTFL 392 (422)
T ss_pred HHHHhccC-c-cccccceeeeeheecchHHHHHHHHHHH---hhhhHHHHH
Confidence 99999998 3 3455556666778899999999999998 445555555
No 235
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=98.24 E-value=0.00013 Score=65.46 Aligned_cols=258 Identities=10% Similarity=0.026 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH------h--h----HHHHH---HHHHHHhhhcc
Q 041698 83 TMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF------A--Q----AIWML---IVGRLLLGFGI 147 (355)
Q Consensus 83 ~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~------~--~----~~~~l---~~~r~l~G~~~ 147 (355)
+...-.-.+..++.++..|.+.||..|.+++..+.+..-++..+.+. . + +.+.. .+.-.+.|...
T Consensus 41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 120 (432)
T PF06963_consen 41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIE 120 (432)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHH
Confidence 33333345667788888999999999999887776655444332221 1 1 11222 22222222211
Q ss_pred ccc-ccchhhhhhhcC------CCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH-h
Q 041698 148 GFA-NQSVPLYLSEMA------PYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG-S 219 (355)
Q Consensus 148 g~~-~~~~~~~~~~~~------~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~ 219 (355)
... .....+.=.||. +++.+.+..+...-.--+.-+++|++.|.+.. ..+.+....+.++..++.... .
T Consensus 121 ~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t---~~s~~~~~~~i~~~N~~S~~vEy 197 (432)
T PF06963_consen 121 RLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMT---FASPVIAAIFIAGWNLASVFVEY 197 (432)
T ss_pred HHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCHHHHHHHHHHHHHHHHHHHH
Confidence 111 111111223442 23444666777777778889999999999987 345666555555555444332 1
Q ss_pred cc---c-cCChhHHHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHH
Q 041698 220 MI---L-PDTPNSIIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQ 295 (355)
Q Consensus 220 ~~---~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (355)
++ + ...|. +..+++.++.....+. .+..+.+.+........+.-++....|+..++.+-...-+...++ .
T Consensus 198 ~~l~~VY~~~P~-L~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalL----Y 271 (432)
T PF06963_consen 198 FLLARVYNSVPA-LAVKKRSSESESSSDE-ESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALL----Y 271 (432)
T ss_pred HHHHHHHHhChH-hcCCCCCccccccccc-cccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHH----H
Confidence 11 1 22222 1111111111000000 000000111111111111112223445555554433332222222 2
Q ss_pred cccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccc
Q 041698 296 FTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFL 350 (355)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~ 350 (355)
++.. .+...+..|+...|+++...+..-....+.++.|+++..++.+|+|..+.
T Consensus 272 ~TVL-sf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~ 325 (432)
T PF06963_consen 272 FTVL-SFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRA 325 (432)
T ss_pred HHHh-cCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 2211 22334445556679999999999999999999999999999999986553
No 236
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.16 E-value=0.00011 Score=66.46 Aligned_cols=118 Identities=11% Similarity=0.179 Sum_probs=80.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNG-----FAQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~r~l~G~~~g~~ 150 (355)
|.+..+.++.......+..+++.+.+.+.++.++++.+.....+..++..+.. ..++++..++..++.++|.+..
T Consensus 250 g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~ 329 (413)
T PRK15403 250 GMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLI 329 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHH
Confidence 88999999998888888889888888876555444443333333333332222 1234444567888889888888
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
.+......- ......+|++.++.......+..+++..++++..
T Consensus 330 ~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~ 372 (413)
T PRK15403 330 FPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWF 372 (413)
T ss_pred hHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777764332 1223347999999999888888899998888865
No 237
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=98.15 E-value=8.4e-06 Score=71.56 Aligned_cols=117 Identities=18% Similarity=0.276 Sum_probs=90.7
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhh----hchhHHHHHH-HHHHHHHHHHHHHhhHH-----------------
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQ----FGRKLSMFFG-GILFLAGALLNGFAQAI----------------- 133 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~Grr~~l~~~-~~~~~~~~~~~~~~~~~----------------- 133 (355)
|++....+.+--+..+...+.+++.|..+|| +||||.++.. .++..++.++..++.+.
T Consensus 63 Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai 142 (498)
T KOG0637|consen 63 GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAI 142 (498)
T ss_pred CCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHH
Confidence 8888888888888888889999999999996 7988766555 45555555666666533
Q ss_pred HHHHHHHHHhhhcccccccchhhhhhhcCCCCcccc-hhhHHHHHHHHHHHHHHHHHHHh
Q 041698 134 WMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGA-LNIGFQLSITVGILIANVLNYFF 192 (355)
Q Consensus 134 ~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~G~~~~~~i~~~~ 192 (355)
..++++..+.=++......++-+++.|....+++.+ +.+.+....++|..+|...+.+.
T Consensus 143 ~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 143 VLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred HHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 344445555555677788899999999998777766 99999999999999998888754
No 238
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.09 E-value=5.5e-08 Score=89.14 Aligned_cols=136 Identities=22% Similarity=0.131 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH--H---hhH----HHHHHHHHHHhhhccc-ccccchhhh
Q 041698 88 SLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNG--F---AQA----IWMLIVGRLLLGFGIG-FANQSVPLY 157 (355)
Q Consensus 88 ~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~--~---~~~----~~~l~~~r~l~G~~~g-~~~~~~~~~ 157 (355)
...+...++.++...+.||+|||+.++.+..+.+++.+..+ . .++ -...+++-.+...+.+ +..+....+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~ 373 (451)
T PF00083_consen 294 ILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIY 373 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccc
Confidence 33455566777778999999999999999999888887664 1 111 1111222222222222 344566688
Q ss_pred hhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHH-HHHHhccccCCh
Q 041698 158 LSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALI-ITVGSMILPDTP 226 (355)
Q Consensus 158 ~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~e~~ 226 (355)
..|.+|.+.|++..++......++..+++.+...+.+. .+-...+.+.+.+.++ .....+++||+.
T Consensus 374 ~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~---~~~~~~~~i~~~~~~i~~i~~~~~lpET~ 440 (451)
T PF00083_consen 374 TAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN---LGGWGVFLIFAGVCLIAIIFVYFFLPETK 440 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccc---ccccccchhhHHHHHHHHhheeEEEeeCC
Confidence 89999999999999999998888888888877666652 2212233343444333 334457789985
No 239
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.07 E-value=0.00011 Score=67.05 Aligned_cols=143 Identities=13% Similarity=0.041 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhc-hhHHHHHHHHHHHHHHHHHHHhhH---------------------HHHHHHHH
Q 041698 83 TMFTSSLYLAALLSSLVASRVTRQFG-RKLSMFFGGILFLAGALLNGFAQA---------------------IWMLIVGR 140 (355)
Q Consensus 83 ~~~~s~~~l~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~~---------------------~~~l~~~r 140 (355)
.+....+.+...+.+++..++.+++| ||++..++.++.+++.+...+.++ .+..++.-
T Consensus 308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (477)
T TIGR01301 308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF 387 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence 34444555555688888899999999 577779998888888877776553 37778888
Q ss_pred HHhhhcccccccchhhhhhhcCCCC--cccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHH
Q 041698 141 LLLGFGIGFANQSVPLYLSEMAPYR--FRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVG 218 (355)
Q Consensus 141 ~l~G~~~g~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 218 (355)
.+.|+..+..+..-++++++..+++ +.|..+|+.+.+..+..++..+..+.+.+..+ .+-...+.+.++..++..+.
T Consensus 388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g-~~~~~~~~~~gv~~~~aa~~ 466 (477)
T TIGR01301 388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG-GGNLPAFVVGAVAAFVSGLL 466 (477)
T ss_pred HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC-CCCeeHHHHHHHHHHHHHHH
Confidence 9999999999999999999999854 44999999999999999999988887655443 23455677777776665554
Q ss_pred h-ccccCCh
Q 041698 219 S-MILPDTP 226 (355)
Q Consensus 219 ~-~~~~e~~ 226 (355)
. +.+|+++
T Consensus 467 ~~~~~~~~~ 475 (477)
T TIGR01301 467 ALILLPRPR 475 (477)
T ss_pred HHHhCCCCC
Confidence 4 5567654
No 240
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.03 E-value=1.7e-05 Score=52.63 Aligned_cols=45 Identities=11% Similarity=0.330 Sum_probs=41.0
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHH
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILF 120 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 120 (355)
|+|..++|.+.++..+...++++++|.++||+++++.++....+.
T Consensus 31 Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 31 GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 999999999999999999999999999999999988877765543
No 241
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.00 E-value=4.3e-05 Score=70.97 Aligned_cols=149 Identities=14% Similarity=0.118 Sum_probs=110.4
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhch-hHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHhhhcccccccchhh
Q 041698 80 ETLTMFTSSLYLAALLSSLVASRVTRQFGR-KLSMFFGGILFLAGALLNGF--AQAIWMLIVGRLLLGFGIGFANQSVPL 156 (355)
Q Consensus 80 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~ 156 (355)
...++....+.++..+++.+.|.+..+++| |+.++++.++..++..+++. .+|....+..-++.|++.|........
T Consensus 349 ~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~ 428 (599)
T PF06609_consen 349 TEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIV 428 (599)
T ss_pred ceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHH
Confidence 356788888899999999999999998876 45556676666654444433 245566678888999999988888888
Q ss_pred hhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcC-----------------------------------------
Q 041698 157 YLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKI----------------------------------------- 195 (355)
Q Consensus 157 ~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~----------------------------------------- 195 (355)
...-..|++.-+.+.++..+.-.+|+.+|..+-.-+.+.
T Consensus 429 ~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~ 508 (599)
T PF06609_consen 429 IAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAA 508 (599)
T ss_pred eeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhh
Confidence 888888888889999999888888888877654332110
Q ss_pred -CC-----------------ccchHHHHhhhHHHHHHHHHHhccccCChhH
Q 041698 196 -HG-----------------GWGWRLSLGGAMVPALIITVGSMILPDTPNS 228 (355)
Q Consensus 196 -~~-----------------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~ 228 (355)
.+ ..++|++|+....++++.+++.+++++..++
T Consensus 509 iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~~ 559 (599)
T PF06609_consen 509 IPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDKY 559 (599)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHh
Confidence 00 1368999998888888888888888776543
No 242
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=97.96 E-value=0.0017 Score=59.40 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=86.0
Q ss_pred CcchhHHHHHHHHH-HHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHh--h-----------------------
Q 041698 78 DSETLTMFTSSLYL-AALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFA--Q----------------------- 131 (355)
Q Consensus 78 s~~~~~~~~s~~~l-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~----------------------- 131 (355)
+.+.+..+-....+ ...+...+..+++++++|.+++-+....+.....++++. +
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 66777777775555 555668889999999999999887777776666555542 0
Q ss_pred ------HHHHHHHHHHHhhhccccccc-chhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 132 ------AIWMLIVGRLLLGFGIGFANQ-SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 132 ------~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
+.|.+.+..++.-+-.....+ .-..+.+|.++.+|-.|..+++..+.++|.++++.+..++.+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234444444444443333333 456788999999999999999999999999999998888877
No 243
>PF12832 MFS_1_like: MFS_1 like family
Probab=97.85 E-value=1.3e-05 Score=53.24 Aligned_cols=57 Identities=16% Similarity=0.343 Sum_probs=50.0
Q ss_pred ccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 297 TGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
.....+.-|.+.+.++.|+++.+.|.+.++..+..+++.++.|+++||.++++..+.
T Consensus 14 ~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~ 70 (77)
T PF12832_consen 14 AALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILL 70 (77)
T ss_pred HHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHH
Confidence 344566778888888999999999999999999999999999999999999887653
No 244
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.83 E-value=0.00038 Score=63.26 Aligned_cols=122 Identities=13% Similarity=0.165 Sum_probs=107.7
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhh-hhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVAS-RVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g-~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 150 (355)
+..++++..+.+...+.......+++++.. .+...+|-|+++.+|+....+...+.+++++.|+......+.++. +..
T Consensus 269 ~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~~~ 347 (463)
T KOG2816|consen 269 KAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-GIV 347 (463)
T ss_pred eeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-cch
Confidence 445599999999888888888888887777 777788999999999999999999999999999999999887775 567
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
.+...+.++.+..++++|++.++.....++...++|.+-+.+..
T Consensus 348 ~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 348 FPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred hHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 88889999999999999999999999999999999988777643
No 245
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.80 E-value=8.1e-05 Score=68.10 Aligned_cols=131 Identities=11% Similarity=0.016 Sum_probs=83.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhh----hchhHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQ----FGRKLSMFFGGILFLAGA-LLNGFAQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr----~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G~~~g~~ 150 (355)
|+|..+.+.+.+.+.++.+++.+++|+++|| ..+|......+.+..+.. +......+......+-.....+....
T Consensus 305 ~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~ 384 (495)
T KOG2533|consen 305 GYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIAT 384 (495)
T ss_pred CcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHH
Confidence 7899999999999999999999999999999 677777766666665555 33333333333333334444445556
Q ss_pred ccchhhhhhhcCCCCcc-cchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhh
Q 041698 151 NQSVPLYLSEMAPYRFR-GALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGA 208 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~ 208 (355)
.+......++....+.| -...+....+.+.+.+++|.+-... ..+.+.|...|...
T Consensus 385 ~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~--~ap~y~~~~~f~~~ 441 (495)
T KOG2533|consen 385 AIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSL--DAPRYGWGAVFYML 441 (495)
T ss_pred HHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccc--cCcchhhhhHHHHH
Confidence 66666777776655444 4445555555555555554432221 12246788877433
No 246
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=97.79 E-value=0.00034 Score=65.46 Aligned_cols=135 Identities=23% Similarity=0.248 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHhhhcccccccchhhhhhhcCCCC
Q 041698 89 LYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIW---MLIVGRLLLGFGIGFANQSVPLYLSEMAPYR 165 (355)
Q Consensus 89 ~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~---~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~ 165 (355)
............+...|++|||.....+..+..++.++.++..... ...+...+...+.+..+.....+.+|.+|..
T Consensus 359 ~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~ 438 (521)
T KOG0255|consen 359 SGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTV 438 (521)
T ss_pred HHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 3335556666668999999999999999999999999999876543 3556666666666667777799999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHH-HHHHhccccCChh
Q 041698 166 FRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALI-ITVGSMILPDTPN 227 (355)
Q Consensus 166 ~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~e~~~ 227 (355)
.|..+.+...+...+|.+++|.+......... .+.... .+....+ ..+...++||+..
T Consensus 439 ~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~--~~~~~~--~~~~~~l~~~~~~~~lpet~~ 497 (521)
T KOG0255|consen 439 VRNTAVGAISAAARLGSILAPLFPLLLRQMFP--LLGLIL--FGWLALLLGLLSLLLLPETKG 497 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cchHHH--HHHHHHHHHHHHHhcCcccCC
Confidence 99999999999999999999998876654211 222222 2333333 3344477898853
No 247
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.72 E-value=0.00084 Score=61.65 Aligned_cols=135 Identities=16% Similarity=0.130 Sum_probs=97.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhch--h----H-HHHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHhh
Q 041698 81 TLTMFTSSLYLAALLSSLVASRVTRQFGR--K----L-SMFFGGILFLAGALLNGFA---------QAIWMLIVGRLLLG 144 (355)
Q Consensus 81 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Gr--r----~-~l~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G 144 (355)
..+|.++...+...+.+|+.+++=.|.+| | + =+.+|+++.+++.++..++ .+.+++++..++++
T Consensus 309 p~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t 388 (493)
T PRK15462 309 PTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMG 388 (493)
T ss_pred CHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence 46677788888888888877777566532 2 1 1667788888877666432 26677899999999
Q ss_pred hcccccccchhhhhhhcCCCCcccchhhHHHHH-HHHHHHHHHHHHHHhhcCCC---------ccchHHHHhhhHHHHHH
Q 041698 145 FGIGFANQSVPLYLSEMAPYRFRGALNIGFQLS-ITVGILIANVLNYFFNKIHG---------GWGWRLSLGGAMVPALI 214 (355)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~G~~~~~~i~~~~~~~~~---------~~~w~~~~~~~~~~~~~ 214 (355)
+|+-+..|...+.+++..|++.|++.++.+... ..+|..++..++........ ...+.-.|...+..+++
T Consensus 389 ~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 468 (493)
T PRK15462 389 FAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALA 468 (493)
T ss_pred HHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999774 36887777777776642110 01355566666665544
Q ss_pred H
Q 041698 215 I 215 (355)
Q Consensus 215 ~ 215 (355)
+
T Consensus 469 ~ 469 (493)
T PRK15462 469 C 469 (493)
T ss_pred H
Confidence 4
No 248
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=97.66 E-value=0.00046 Score=60.97 Aligned_cols=137 Identities=17% Similarity=0.186 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhh
Q 041698 81 TLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSE 160 (355)
Q Consensus 81 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~ 160 (355)
-.+.+.-+-.+...+..+.+.+..+|+..+.=...+.++..++.++.+++++.+.=+++-++.+++.|........+..
T Consensus 60 ~t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~- 138 (402)
T PF02487_consen 60 STGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH- 138 (402)
T ss_pred cchHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-
Confidence 3455555666777788888888999988666666677788888999999999999999999999999988888777644
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcc-ccC
Q 041698 161 MAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMI-LPD 224 (355)
Q Consensus 161 ~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~e 224 (355)
.+++ ...+.+.++.+.++++|+..-..+.+ . ..+-|..+.+...+.++..+.+++ +|.
T Consensus 139 ~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~-g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 139 FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-L-GLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred hcCc----cccccccCCcChhhHHHHHHHHHHHH-h-CcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5543 35788888999999999887666655 2 245577777666555544444443 443
No 249
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=97.59 E-value=0.00025 Score=63.28 Aligned_cols=108 Identities=19% Similarity=0.363 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---------HHHHHHHHHHHhhhcccccccchhhhhhhcCCCCc---ccchhhHHHHHH
Q 041698 111 LSMFFGGILFLAGALLNGFAQ---------AIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRF---RGALNIGFQLSI 178 (355)
Q Consensus 111 ~~l~~~~~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~ 178 (355)
|+++++.++..+|.++..++. +.+.+.++..+.++|.|+.-|....+++|.+++++ |.+...+++.+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 677888889999988855442 23678899999999999999999999999998763 467778899999
Q ss_pred HHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcc
Q 041698 179 TVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMI 221 (355)
Q Consensus 179 ~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 221 (355)
++|..++..+.+++.+ +++|.+.|.+.++..++.++.++.
T Consensus 82 n~G~~~~~~~~~~i~~---~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQ---NYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHH---CS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhcc---ccchhhhhhHHHHHHHHHHHHHHh
Confidence 9999999999999987 678999999888776666555433
No 250
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.54 E-value=0.0002 Score=61.72 Aligned_cols=122 Identities=19% Similarity=0.184 Sum_probs=108.3
Q ss_pred ccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhc--hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccc
Q 041698 73 QYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFG--RKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 150 (355)
+.+|.++.|.|-+.+...++..+.+....+..||.. -+-.+..++.+..-..++.+.+++...+.++-.+-.+..+..
T Consensus 290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~ 369 (451)
T KOG2615|consen 290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASV 369 (451)
T ss_pred CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHh
Confidence 456899999999999999999999999999999987 677777777777777777788888888999999999988888
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
.+....++....|.++||.+.|+......++-++||+++|.+..
T Consensus 370 vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 370 VTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred hHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 99999999999999999999999999999999999999988765
No 251
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=97.48 E-value=0.00034 Score=57.41 Aligned_cols=86 Identities=15% Similarity=0.244 Sum_probs=66.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
+....+++.+.-+.+-..++...+.|-++|+.|||+.-+.-++...++++ .-.++.|-.++++|.+-|++.+..+.+..
T Consensus 68 gFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLFSaFE 146 (454)
T KOG4332|consen 68 GFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLFSAFE 146 (454)
T ss_pred CccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHHHHHH
Confidence 77788888888777777888888899999999999976554444444332 33567899999999999999888887777
Q ss_pred hhh-hhcC
Q 041698 156 LYL-SEMA 162 (355)
Q Consensus 156 ~~~-~~~~ 162 (355)
++. .|.-
T Consensus 147 sWliaEHn 154 (454)
T KOG4332|consen 147 SWLIAEHN 154 (454)
T ss_pred HHHHHHhh
Confidence 654 4544
No 252
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=97.43 E-value=0.00039 Score=59.14 Aligned_cols=246 Identities=11% Similarity=0.088 Sum_probs=147.2
Q ss_pred HHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchh
Q 041698 92 AALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALN 171 (355)
Q Consensus 92 ~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~ 171 (355)
.+.+.-.+.=.+.|..-.|+++++-.+.......+.-+.++.+.+=+.-++.|...+ ...+.++++-+..+++++-++.
T Consensus 54 SYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqrvt 132 (433)
T KOG3810|consen 54 SYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKRVT 132 (433)
T ss_pred HHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHHHH
Confidence 344555555568999999999998888888888888899999999999999998754 5667788898999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHHHHHHHHHHhCCCcc
Q 041698 172 IGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEEAREELRKVRGVNDV 251 (355)
Q Consensus 172 ~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (355)
+...++.-.|...|..++-.+.... ..++...-.+......+......++|..+|...-+.+.++.. ..+..+.+..
T Consensus 133 ~y~RaA~L~g~~~g~vlaQlLvs~~-~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~--v~~~e~~~~~ 209 (433)
T KOG3810|consen 133 GYCRAAFLVGKFVGSVLAQLLVSLE-TLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKIS--VGDLEEMNPQ 209 (433)
T ss_pred HHhHHHHHHHhHHHhHHHHHHhhhc-ccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccce--eccchhcCcc
Confidence 9999999888888888887776533 245555555555555555566677887765443333222211 0111111100
Q ss_pred HHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcC--CCCcHHHHHHHHHHH
Q 041698 252 EEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIG--FGSDASLMSAVITGI 329 (355)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~ 329 (355)
....+-+... -..-...+.+..+.+ .+....+.+.....+++-+.+|...+-++.. -.....|..=++..+
T Consensus 210 ~~~~~~l~~~---~~~l~~~l~~~y~np----~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tl 282 (433)
T KOG3810|consen 210 ASYMSYLRGA---FVLLWRDLQECYSNP----RLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTL 282 (433)
T ss_pred chhhHHHHHH---HHHHHHHHHHHhcCc----hhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHH
Confidence 0000000000 000001122222222 1222223333333455566667666666543 111223455566677
Q ss_pred HHHHHhhhhhheecccCCc
Q 041698 330 VNVVATMVSIYGVDKWGRR 348 (355)
Q Consensus 330 ~~~~~~~~~g~l~d~~g~r 348 (355)
.++++.+..|.+.-...|+
T Consensus 283 LGa~~~~~~g~l~i~w~r~ 301 (433)
T KOG3810|consen 283 LGAIAALAAGYLNINWNRW 301 (433)
T ss_pred HHHHHHHHHHheeeccchh
Confidence 7888888999886655554
No 253
>PTZ00207 hypothetical protein; Provisional
Probab=97.38 E-value=0.0026 Score=59.65 Aligned_cols=134 Identities=10% Similarity=0.029 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhchh--------H-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 85 FTSSLYLAALLSSLVASRVTRQFGRK--------L-SMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 85 ~~s~~~l~~~~~~~~~g~l~dr~Grr--------~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
+++...++..+|-+..|.++...-+| + .+.+..+ ..++.++.++.-....+.+.-++.|++.|..++...
T Consensus 396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~ 474 (591)
T PTZ00207 396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIA 474 (591)
T ss_pred ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHH
Confidence 67778888888888888777222121 2 2333333 555666666554336899999999999999999999
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHH-HHHHHHhhcCCC----------ccchHHHHhhhHHHHHHHHHHhc
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIA-NVLNYFFNKIHG----------GWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~-~~i~~~~~~~~~----------~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
..++|.|- |+-|+...+...+..+|..+- ..+.|.+.+... ..=+|..|++.+.++++..+...
T Consensus 475 ~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~ 549 (591)
T PTZ00207 475 LVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITST 549 (591)
T ss_pred HHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHh
Confidence 99999998 888999999888888888776 456665543211 12268888888888777666543
No 254
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=97.34 E-value=0.023 Score=51.19 Aligned_cols=118 Identities=12% Similarity=0.156 Sum_probs=88.0
Q ss_pred CCcchhHHHHHHHHH-HHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh------------------------
Q 041698 77 YDSETLTMFTSSLYL-AALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ------------------------ 131 (355)
Q Consensus 77 ~s~~~~~~~~s~~~l-~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~------------------------ 131 (355)
.+++.+.++-+...+ +..+..++.+++.+++-|.+++-+.+..+....+++++.=
T Consensus 58 ~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~ 137 (509)
T COG3202 58 QGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMF 137 (509)
T ss_pred CcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcc
Confidence 367788888888888 7789999999999999999999888888877777776531
Q ss_pred --------HHHHHHHHHHHhhhccccccc-chhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 132 --------AIWMLIVGRLLLGFGIGFANQ-SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 132 --------~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
+.|...+...+.=+-.+.... .-.....|.+..+|-.|..++++.+.+++..++..+..++.+
T Consensus 138 l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 138 LKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred ceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 113333333333332222222 334556788888888999999999999999999999998876
No 255
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=97.29 E-value=0.017 Score=54.17 Aligned_cols=140 Identities=16% Similarity=0.192 Sum_probs=109.9
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHHhhH----------------------
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQF-GRKLSMFFGGILFLAGALLNGFAQA---------------------- 132 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~---------------------- 132 (355)
|.+...+.-.++.+.-......++++.++|-| ||-+++.++.++..++.++...+..
T Consensus 69 ~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s 148 (571)
T KOG1237|consen 69 HASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPS 148 (571)
T ss_pred ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcc
Confidence 77778888888888888889999999999975 9999999999999988765544321
Q ss_pred ---HHHHHHHHHHhhhcccccccchhhhhhhcCC---CCc---ccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHH
Q 041698 133 ---IWMLIVGRLLLGFGIGFANQSVPLYLSEMAP---YRF---RGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRL 203 (355)
Q Consensus 133 ---~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~---~~~---r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~ 203 (355)
...+..+.-+..+|.|+.-+....+-+|-++ +++ +...+.++....++|..++..+..+..+ +.+|.+
T Consensus 149 ~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~---~~~w~l 225 (571)
T KOG1237|consen 149 KLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQD---NVGWKL 225 (571)
T ss_pred hHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhh---ccccee
Confidence 1356666677888999999999999999988 322 2467889999999999999998888876 568988
Q ss_pred HHhhhHHHHHHHHHH
Q 041698 204 SLGGAMVPALIITVG 218 (355)
Q Consensus 204 ~~~~~~~~~~~~~~~ 218 (355)
-|-+..+.-.+++++
T Consensus 226 gf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 226 GFGIPTVLNALAILI 240 (571)
T ss_pred eccHHHHHHHHHHHH
Confidence 888776665444433
No 256
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.01 Score=51.51 Aligned_cols=137 Identities=20% Similarity=0.221 Sum_probs=84.9
Q ss_pred HhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhh----
Q 041698 30 AAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTR---- 105 (355)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d---- 105 (355)
..+-+...|...+..+ . +|-+++.- |.|.++.+...-++. -.---+++.++.|
T Consensus 36 Ll~LYllQGiP~GL~~-~--iP~lL~ak------------------~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~ 92 (510)
T KOG3574|consen 36 LLFLYLLQGIPLGLIG-A--IPLLLQAK------------------GVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYS 92 (510)
T ss_pred HHHHHHHcCCchhHhh-h--hHHHhcCC------------------Ccchhhhhhhhhhhh--HHHHHHHHHhhhHHHHH
Confidence 3334577888777776 2 67666643 777777665543322 1123577888888
Q ss_pred -hhchhHHHHH-HHHHHHHHHHHHHH-----------hhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhh
Q 041698 106 -QFGRKLSMFF-GGILFLAGALLNGF-----------AQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNI 172 (355)
Q Consensus 106 -r~Grr~~l~~-~~~~~~~~~~~~~~-----------~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~ 172 (355)
|+||||.-++ +..+.+......+. .++...+....++.-+.++.-..+.-.+.-.+..+++.|-+..
T Consensus 93 k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST 172 (510)
T KOG3574|consen 93 KRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYAST 172 (510)
T ss_pred HhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhH
Confidence 9999876332 23333333322222 1344444445555566666666677777777888888898888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041698 173 GFQLSITVGILIANVLN 189 (355)
Q Consensus 173 ~~~~~~~~G~~~~~~i~ 189 (355)
....+.+.|..++..+-
T Consensus 173 ~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 173 CQSVGQTAGYFLGNVVF 189 (510)
T ss_pred HHHHHHhhhHHhhccee
Confidence 88888888888776543
No 257
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.03 E-value=0.0017 Score=59.02 Aligned_cols=151 Identities=13% Similarity=0.116 Sum_probs=109.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHhhh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF----------AQAIWMLIVGRLLLGF 145 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~l~G~ 145 (355)
|.|....+.+..+..++..+|..+..+...+..-|+++.++.++.++..+.-.. .++.+..+.--++..+
T Consensus 251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~ 330 (433)
T PF03092_consen 251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV 330 (433)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence 588999999998899999999999999988889999998888877766653221 1222333444455666
Q ss_pred cccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC-----ccchHHHHhhhHHHHHHHHHHhc
Q 041698 146 GIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHG-----GWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 146 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~-----~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
..+..+.+...+++|..|+..-|...++.....++|..++..++..+.+..+ ..+-.+..++.....++.+....
T Consensus 331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~ 410 (433)
T PF03092_consen 331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLF 410 (433)
T ss_pred HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 6666677778889999999999999999999999999999999988876432 11222334444444444444455
Q ss_pred cccCCh
Q 041698 221 ILPDTP 226 (355)
Q Consensus 221 ~~~e~~ 226 (355)
++|++.
T Consensus 411 lLp~~~ 416 (433)
T PF03092_consen 411 LLPPQK 416 (433)
T ss_pred HcCCCc
Confidence 677654
No 258
>PRK03612 spermidine synthase; Provisional
Probab=97.01 E-value=0.06 Score=50.18 Aligned_cols=117 Identities=17% Similarity=0.149 Sum_probs=70.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHH---HHHHH----HHhhHH-HHHHHHHHHhhhcc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLA---GALLN----GFAQAI-WMLIVGRLLLGFGI 147 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~---~~~~~----~~~~~~-~~l~~~r~l~G~~~ 147 (355)
|-+..+.+.+.+++.+|.++|+.+++++.++.-++.. .+-..+..+ +..+. ++.... ..+...-++.++..
T Consensus 46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (521)
T PRK03612 46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI 124 (521)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999999999999988754333322 221111111 11111 111111 22233445667777
Q ss_pred cccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 148 GFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
|+..|....+..+... ++-++..+-.+....+|+++|.++.+++.-
T Consensus 125 G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl 170 (521)
T PRK03612 125 GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLL 170 (521)
T ss_pred HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence 8777777766655332 223566677777788888888877777653
No 259
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.84 E-value=0.02 Score=51.60 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=93.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH---h---h----HHHHHHHHHHHhhh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF---A---Q----AIWMLIVGRLLLGF 145 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~---~---~----~~~~l~~~r~l~G~ 145 (355)
|++...+|..-+...+....+.+...++.+|+|..|.=+++......+..++.. . + +...++.+-++.-+
T Consensus 289 G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~ 368 (432)
T PF06963_consen 289 GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRI 368 (432)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988888877665554433332 1 1 34455555555556
Q ss_pred cccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 146 GIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 146 ~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
|.=++..+..-++.|..|+++||...+.-....++-.++...++-.+.+
T Consensus 369 GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~ 417 (432)
T PF06963_consen 369 GLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPR 417 (432)
T ss_pred HHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 6666777888899999999999999999999999988888777655443
No 260
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=96.80 E-value=0.027 Score=50.91 Aligned_cols=139 Identities=19% Similarity=0.208 Sum_probs=98.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhchh-------HHHHHHHHHHHHHHHHHHHh----------hHHHHHHHHHHH
Q 041698 80 ETLTMFTSSLYLAALLSSLVASRVTRQFGRK-------LSMFFGGILFLAGALLNGFA----------QAIWMLIVGRLL 142 (355)
Q Consensus 80 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l 142 (355)
-..++.++...+..++.+++..++-.+.++| .-+-+++.+.+.+.++.... .+.++++...++
T Consensus 324 vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l 403 (498)
T COG3104 324 VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVL 403 (498)
T ss_pred cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH
Confidence 3446667777777777777777777774443 33556666666666555543 267899999999
Q ss_pred hhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc---CCCccchHHHHhhhHHHHHHHHHH
Q 041698 143 LGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK---IHGGWGWRLSLGGAMVPALIITVG 218 (355)
Q Consensus 143 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~---~~~~~~w~~~~~~~~~~~~~~~~~ 218 (355)
+++|+=+..|+..+++....|++-.+..++.+......|..++..+++.... ......-...|+..+..+++....
T Consensus 404 ~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~ 482 (498)
T COG3104 404 QSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGIL 482 (498)
T ss_pred HHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999988999999998888888888777773221 000123444566555555544433
No 261
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=96.78 E-value=0.023 Score=51.35 Aligned_cols=52 Identities=15% Similarity=0.079 Sum_probs=35.7
Q ss_pred HhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhh
Q 041698 142 LLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFN 193 (355)
Q Consensus 142 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~ 193 (355)
+.-+-++---.++-.+.-.+.++++++.+......+.+.|..++..+--.+.
T Consensus 127 ~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlaln 178 (544)
T PF13000_consen 127 ILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALN 178 (544)
T ss_pred HHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhC
Confidence 3333334444555666667777888999999999888888888766544443
No 262
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=96.64 E-value=0.037 Score=50.32 Aligned_cols=91 Identities=12% Similarity=0.087 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCc---cch--HHHHh
Q 041698 132 AIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGG---WGW--RLSLG 206 (355)
Q Consensus 132 ~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~---~~w--~~~~~ 206 (355)
.++..++.-++.|++.+..+.....+.+. +|++ .+..+..+.+++++++.++.-.......+ ..+ ...|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~~-fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAGV-FPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhccc-CCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 57777788888999999888888888774 5543 34555566666666655443322111101 122 22333
Q ss_pred hhHHHHHHHHHHhccccCChh
Q 041698 207 GAMVPALIITVGSMILPDTPN 227 (355)
Q Consensus 207 ~~~~~~~~~~~~~~~~~e~~~ 227 (355)
+..++.+++++....++..|.
T Consensus 180 ~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 180 TPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred HHHHHHHHHHHHHHHHhcCHH
Confidence 444444445555555666664
No 263
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=96.63 E-value=0.16 Score=44.97 Aligned_cols=91 Identities=12% Similarity=0.091 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCC--CccchHHHHhhhH
Q 041698 132 AIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIH--GGWGWRLSLGGAM 209 (355)
Q Consensus 132 ~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~--~~~~w~~~~~~~~ 209 (355)
.++..++.-.+.+.+.|..+.......++. |++.-. ....+.++++.+..+..-...... ...+=...|.+..
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ytq----avm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~ 190 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYTQ----AVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITST 190 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHHH----HHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHH
Confidence 567777788888999888888888777765 444322 223334444444333322221111 1123333444444
Q ss_pred HHHHHHHHHhccccCChh
Q 041698 210 VPALIITVGSMILPDTPN 227 (355)
Q Consensus 210 ~~~~~~~~~~~~~~e~~~ 227 (355)
++.+++.++...+|..|-
T Consensus 191 ~~~llC~i~y~~l~~lpf 208 (406)
T KOG1479|consen 191 VILLLCFVLYLVLPKLPF 208 (406)
T ss_pred HHHHHHHHHHHHhhcchH
Confidence 444445555555676664
No 264
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=96.42 E-value=0.0036 Score=56.69 Aligned_cols=79 Identities=16% Similarity=0.311 Sum_probs=58.0
Q ss_pred hhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhH
Q 041698 32 MGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKL 111 (355)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~ 111 (355)
+.+++.+..++.+-+. ++.|.++. |++..+.|.+...--+..+++.|++|+++||+-+||
T Consensus 18 ~f~~~~~~~~g~l~pl--l~vy~kQL------------------Gl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r 77 (618)
T KOG3762|consen 18 LFYLFFGARFGSLFPL--LAVYFKQL------------------GLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRR 77 (618)
T ss_pred eeeeeeeecccccchH--HHHHHHHc------------------CCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 3445555555555444 56666665 999999999999999999999999999999998665
Q ss_pred HHHHH-HHHHHHHHHHHHHh
Q 041698 112 SMFFG-GILFLAGALLNGFA 130 (355)
Q Consensus 112 ~l~~~-~~~~~~~~~~~~~~ 130 (355)
.++++ ++.....+++..+.
T Consensus 78 ~lllgsl~~~v~a~fll~fv 97 (618)
T KOG3762|consen 78 PLLLGSLLLSVTATFLLVFV 97 (618)
T ss_pred chhHHHHHHHHHHHHheeec
Confidence 55554 55555555655554
No 265
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=96.21 E-value=0.037 Score=49.19 Aligned_cols=113 Identities=16% Similarity=0.149 Sum_probs=83.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHH--H---HHHHHHHhhHHHHHHHHHHHhhhccccccc
Q 041698 78 DSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFL--A---GALLNGFAQAIWMLIVGRLLLGFGIGFANQ 152 (355)
Q Consensus 78 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~--~---~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 152 (355)
..++..+...+|.+|-.++.--...+ |+ |+..+.+.+... + .....-+.++.|..++.-+..|+..|..+.
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 45677888888888877765433222 33 444333332222 2 222333568899999999999999999999
Q ss_pred chhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 153 SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
-....+.|-.++++|..+++....+.++|..++.+++..+.+
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998877653
No 266
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.12 E-value=0.078 Score=47.36 Aligned_cols=149 Identities=15% Similarity=0.021 Sum_probs=88.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhc-hhHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFG-RKLSMFFGGILFLAGALLNGFAQ----AIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~ 150 (355)
|.+....|++.....++.++++.+.|.+.||.. -|.++++......++.......+ +.+.+...-.+.|++....
T Consensus 297 gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~ 376 (480)
T KOG2563|consen 297 GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGY 376 (480)
T ss_pred cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCC
Confidence 556678899999999999999999999999986 46666666666666643322222 2344445556677777888
Q ss_pred ccchhhhhhhcC-CCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHH-HHHHHHHhccccCC
Q 041698 151 NQSVPLYLSEMA-PYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVP-ALIITVGSMILPDT 225 (355)
Q Consensus 151 ~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~e~ 225 (355)
.|...-+-.|.. |..+ +...|+......+-..+-..+-+...+..+..+|.....+.... .++..+...+++|+
T Consensus 377 ~Pig~ElgvE~TyPv~E-~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~ 452 (480)
T KOG2563|consen 377 LPIGFELGVETTYPVAE-GTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPD 452 (480)
T ss_pred CCcceeeeeeeccccCC-cccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence 898888888775 5555 44445444443333334444444444322223444433333333 33333333444444
No 267
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.31 Score=44.29 Aligned_cols=104 Identities=22% Similarity=0.299 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhh---hchhHHHHHHHHHHHHHHHHHHHh------------------hHHHHHHHHHHHhh
Q 041698 86 TSSLYLAALLSSLVASRVTRQ---FGRKLSMFFGGILFLAGALLNGFA------------------QAIWMLIVGRLLLG 144 (355)
Q Consensus 86 ~s~~~l~~~~~~~~~g~l~dr---~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l~G 144 (355)
.-...+|..++..+.+.+++| +||++.+.++..+..++.++.-.. +++...++.-++.|
T Consensus 285 ~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G 364 (461)
T KOG3098|consen 285 SIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLG 364 (461)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHh
Confidence 333445566666677777754 799999999998888888776542 25667788889999
Q ss_pred hcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHH
Q 041698 145 FGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNY 190 (355)
Q Consensus 145 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~ 190 (355)
++-+......+.++...+ +++|..+.++...-..++..++-....
T Consensus 365 ~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 365 FGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred hHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999 567888888777777777666544433
No 268
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=95.24 E-value=0.016 Score=55.57 Aligned_cols=68 Identities=12% Similarity=0.000 Sum_probs=53.7
Q ss_pred HHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 287 AVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
...+..+.+...........+.+.++++++..+.|++.+...++..++.++.+++.||.+||+.+.+|
T Consensus 37 ~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g 104 (633)
T TIGR00805 37 LLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIG 104 (633)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEec
Confidence 33334444444444555566777788999999999999999999999999999999999999988765
No 269
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=94.69 E-value=0.058 Score=49.03 Aligned_cols=55 Identities=9% Similarity=0.074 Sum_probs=48.4
Q ss_pred cchHhcHHHHHHhcCCCCcH-HHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 300 NVIMFYAPVLFNTIGFGSDA-SLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 300 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
....+..|++.+++|++.++ .+.+......+..+..+..|+++||+|.|+++.++
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~ 98 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQ 98 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 34556677888899999999 99999999999999999999999999999987653
No 270
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=94.03 E-value=0.054 Score=49.32 Aligned_cols=75 Identities=12% Similarity=0.133 Sum_probs=56.8
Q ss_pred HHHHHHH-HHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHH
Q 041698 134 WMLIVGR-LLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVP 211 (355)
Q Consensus 134 ~~l~~~r-~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~ 211 (355)
+.+++.+ ++.|++.-.......++-+|...+++++...+++......+..++|++....-. ..|.|++..+.+..
T Consensus 388 ~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~---~~g~~~v~~~~~~~ 463 (488)
T KOG2325|consen 388 ILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFT---LSGPRPVWIILLCL 463 (488)
T ss_pred hhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHH---hcCccHHHHHHHHH
Confidence 4445554 456777766677788888999999999999999999999999999999888776 34555555444333
No 271
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=93.70 E-value=0.064 Score=36.07 Aligned_cols=51 Identities=12% Similarity=-0.016 Sum_probs=43.3
Q ss_pred hHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 302 IMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 302 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
++-..|.+.++.++|..+.+++.+.+.++.++|.+...++.++.++++.+.
T Consensus 11 yTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~ 61 (85)
T PF06779_consen 11 YTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLR 61 (85)
T ss_pred HHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 344678888999999999999999999999999999999988866665543
No 272
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=92.98 E-value=0.1 Score=43.37 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=50.2
Q ss_pred HHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 294 QQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
......+.+..|.|.+.+++|++.++...+.....++..+| ++.|.+.|+.|.+..+.+|
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG 72 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIG 72 (250)
T ss_pred HhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHH
Confidence 33456778889999999999999999888888888888764 8889999999998877655
No 273
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=92.94 E-value=0.16 Score=44.10 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=38.6
Q ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 310 FNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 310 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
.+++|++..+.+.++....+...+...+.|.+.||+|||+.-+
T Consensus 61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl 103 (354)
T PF05631_consen 61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACL 103 (354)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 3679999999999999999999999999999999999998644
No 274
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=92.69 E-value=0.21 Score=44.87 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=45.4
Q ss_pred cchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 300 NVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 300 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
+.+..-.+-..+.+|.++...|++.....+...++.+++|++.||++|++++.+|
T Consensus 50 ~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG 104 (493)
T KOG1330|consen 50 YTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVG 104 (493)
T ss_pred hhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeH
Confidence 3333334444455899999999999999999999999999999999999998765
No 275
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=91.27 E-value=0.39 Score=43.16 Aligned_cols=116 Identities=13% Similarity=0.015 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhh
Q 041698 81 TLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSE 160 (355)
Q Consensus 81 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~ 160 (355)
.-.|-..++.+...+.+....+++||+|-|+.+..+...+.++..+.+..++.+....-+-..|+-.+....+-...+++
T Consensus 333 ~G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~ 412 (498)
T KOG0637|consen 333 MGCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALAL 412 (498)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHH
Confidence 33444556778888999999999999998888877777788888888888888888888888886555554443333322
Q ss_pred cC---------------------CCC--cccchhhHHHHHHHHHHHHHHHHHHHhhcCC
Q 041698 161 MA---------------------PYR--FRGALNIGFQLSITVGILIANVLNYFFNKIH 196 (355)
Q Consensus 161 ~~---------------------~~~--~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~ 196 (355)
+. ... -+|...++.++...+-.++.....|.+.+..
T Consensus 413 y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~ 471 (498)
T KOG0637|consen 413 YAILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLF 471 (498)
T ss_pred HHHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhc
Confidence 11 111 1355666677776666666666666665543
No 276
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=91.09 E-value=0.064 Score=46.50 Aligned_cols=82 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCc--cchHHHHhhhHHHHHHHHHH
Q 041698 141 LLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGG--WGWRLSLGGAMVPALIITVG 218 (355)
Q Consensus 141 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~~ 218 (355)
++.|.+.+..+.....+.+. +|++. ......+.++++++..++.-......++ .+-...|.+..++.+++++.
T Consensus 5 ~~~~~~~~~~q~s~~glas~-~p~~y----~~a~~~Gq~~aGv~~s~l~ii~~~~~~~~~~~a~~yF~~a~~i~i~~~~~ 79 (309)
T PF01733_consen 5 ALIGFANAVLQSSLFGLASL-FPPKY----TQAVMIGQGLAGVIVSLLRIITKASGSDVKTSAFIYFIIAVLIVILCIIL 79 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEHhhhHHHhccHHHHHhc-CCHHH----HHHHHhhccHHHHHHHHHHHHHHHhhhccchhhhhHHHHHHHHHHHHHHH
Confidence 45677777777777777775 55543 3334445555555544333311111111 12222333344444444445
Q ss_pred hccccCChh
Q 041698 219 SMILPDTPN 227 (355)
Q Consensus 219 ~~~~~e~~~ 227 (355)
++.++..|.
T Consensus 80 ~~~l~~~~~ 88 (309)
T PF01733_consen 80 YFILPRSPF 88 (309)
T ss_dssp ---------
T ss_pred HHHhccChH
Confidence 555665553
No 277
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=90.22 E-value=4.6 Score=36.14 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=78.5
Q ss_pred CcchhHHHHHH-HHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHhhhcccc
Q 041698 78 DSETLTMFTSS-LYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNG-------FAQAIWMLIVGRLLLGFGIGF 149 (355)
Q Consensus 78 s~~~~~~~~s~-~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~-------~~~~~~~l~~~r~l~G~~~g~ 149 (355)
++...-.+... +++.-.+|.+.+.++-+.=.|+.......=+..+-.+..+ +-.+-+.+++...+.|+.+|-
T Consensus 280 ~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGY 359 (406)
T KOG1479|consen 280 GDWYALLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGY 359 (406)
T ss_pred chhhHHHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccch
Confidence 34455555566 8888999977777766654444333333333333333322 235667888999999999999
Q ss_pred cccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHH
Q 041698 150 ANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNY 190 (355)
Q Consensus 150 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~ 190 (355)
.....+.+..+-.+++++..+..+.......|...|..++.
T Consensus 360 ltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~ 400 (406)
T KOG1479|consen 360 LTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW 400 (406)
T ss_pred HhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999888888888887888777766543
No 278
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=89.75 E-value=7.9 Score=33.60 Aligned_cols=73 Identities=25% Similarity=0.317 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcC
Q 041698 89 LYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMA 162 (355)
Q Consensus 89 ~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~ 162 (355)
..+.-+.++++.+.+..++|-|.++.++....... +..-+-+.+..++-.-...|++.+..+..--+|+++.-
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence 44556667777779999999999998887776552 22334467888889999999999999887777776554
No 279
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=89.41 E-value=3.8 Score=34.49 Aligned_cols=133 Identities=17% Similarity=0.122 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhchh--HHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHhhhcccccc
Q 041698 81 TLTMFTSSLYLAALLSSLVASRVTRQFGRK--LSMFFGGILFLAGALLNGFAQ-------AIWMLIVGRLLLGFGIGFAN 151 (355)
Q Consensus 81 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~ 151 (355)
--|.+.+.+.++.++|+-+..++..|-..| ..+.+..+..++...+..... +...-+++.++.-.+.|..+
T Consensus 283 PhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfw 362 (454)
T KOG4332|consen 283 PHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFW 362 (454)
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcc
Confidence 348899999999999999998888775544 555555555554443332221 22233555566666788899
Q ss_pred cchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC-ccchHHHHhhhHHHHHHHHH
Q 041698 152 QSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHG-GWGWRLSLGGAMVPALIITV 217 (355)
Q Consensus 152 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~ 217 (355)
|..+.+-+...|++.|...+.++..-.++-..++-. -.+..+ ..+-|..|-++.+...+..+
T Consensus 363 PSimkmRsqyIPEearstimNfFRvPLnifvClvLy----nlh~~~~p~~tr~mf~icS~~~~~a~i 425 (454)
T KOG4332|consen 363 PSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLY----NLHVDAFPTTTRNMFGICSAFLFVASI 425 (454)
T ss_pred hHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhhe----ecccccCccccchhhhhhHHHHHHHHH
Confidence 999999999999999999998887665544333211 111111 23556777776666555433
No 280
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=89.09 E-value=3.8 Score=37.47 Aligned_cols=111 Identities=17% Similarity=0.172 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhchh--HHHHH--HHHHHHHHHHHHHH---------hhHHHHHHHHHHHhhhcc
Q 041698 81 TLTMFTSSLYLAALLSSLVASRVTRQFGRK--LSMFF--GGILFLAGALLNGF---------AQAIWMLIVGRLLLGFGI 147 (355)
Q Consensus 81 ~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr--~~l~~--~~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~~~ 147 (355)
..-.+...++++-.+|..+..+.. .-++| .+++. .-+++.-..++|.. -++-+..++..++.|+.+
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn 386 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN 386 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence 445566777788888877554331 11222 33322 22233333333332 246677778899999999
Q ss_pred cccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHh
Q 041698 148 GFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFF 192 (355)
Q Consensus 148 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~ 192 (355)
|-.......+..+..++++|..+..+...+..+|..+|..++..+
T Consensus 387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888776544
No 281
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=88.36 E-value=1.2 Score=36.93 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=36.1
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHhhcC--CCccchHHHHhhhHHHHHHHHHHhccc
Q 041698 165 RFRGALNIGFQLSITVGILIANVLNYFFNKI--HGGWGWRLSLGGAMVPALIITVGSMIL 222 (355)
Q Consensus 165 ~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~ 222 (355)
|+|+..+.+...+.++|.++.-..-..-.+. ....+|++++.+.+++.++-++....+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888888888888888765432111010 012469999988887766655554433
No 282
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=87.97 E-value=9.4 Score=34.41 Aligned_cols=98 Identities=13% Similarity=0.056 Sum_probs=71.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 78 DSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMF--FGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 78 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~--~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
+...-|.+-++..+...++++..|++..++.+-.-+. ...++.+...+++++.+|.|...++.++.+.......+...
T Consensus 283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~ 362 (412)
T PF01770_consen 283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIAS 362 (412)
T ss_pred CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455688888899999999999999977777754443 33444455556677889999999999888877777777777
Q ss_pred hhhhhcCCCCcccchhhHHH
Q 041698 156 LYLSEMAPYRFRGALNIGFQ 175 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~ 175 (355)
.-++.....+.-+...|+..
T Consensus 363 ~qIA~~l~~e~yaLVFGiNt 382 (412)
T PF01770_consen 363 FQIAKNLSEERYALVFGINT 382 (412)
T ss_pred HHHHHhccccceeeeeeeHH
Confidence 66776665554466666554
No 283
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=87.63 E-value=1.8 Score=37.04 Aligned_cols=114 Identities=16% Similarity=0.166 Sum_probs=77.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhh
Q 041698 80 ETLTMFTSSLYLAALLSSLVASRVTRQF-GRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYL 158 (355)
Q Consensus 80 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~ 158 (355)
.|.-|....|.+|..++.--....--++ =--.++..-.+++.+...+..+.+++|...+.-+.-|+-.|..++-..--+
T Consensus 288 sqYRwyqvlYQlGVFiSRSS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i 367 (409)
T KOG3880|consen 288 SQYRWYQVLYQLGVFISRSSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNI 367 (409)
T ss_pred hcchhhheeeeeeEEEEeccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHH
Confidence 3566777777776544322211111110 001122223344444556667788999988888999998888888777777
Q ss_pred hhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhh
Q 041698 159 SEMAPYRFRGALNIGFQLSITVGILIANVLNYFFN 193 (355)
Q Consensus 159 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~ 193 (355)
.+-.++++|-.+++....+-.+|..++.+++-.+-
T Consensus 368 ~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh 402 (409)
T KOG3880|consen 368 HKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH 402 (409)
T ss_pred hhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence 77778899999999999999999999888876653
No 284
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=84.92 E-value=1 Score=38.51 Aligned_cols=134 Identities=13% Similarity=0.105 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhc
Q 041698 82 LTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEM 161 (355)
Q Consensus 82 ~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~ 161 (355)
.|.+.-+-.+-..+..+.+....||+---.-..+..++.+.+.++.+++++.++-+.+-.+..++.|.-......+-+.
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~- 142 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR- 142 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-
Confidence 3444445556667777778888888643333344566777778888999999999999999999888777665555333
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhcc
Q 041698 162 APYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMI 221 (355)
Q Consensus 162 ~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 221 (355)
++ ....+.+..+.+.++++|..--.++.+.. +.+-|-..++...+.++.....++
T Consensus 143 Y~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~-~~spk~Tlli~l~lP~lfa~~yf~ 197 (409)
T KOG3880|consen 143 YP----SIVIAGWSSGTGGAGLIGASSYAFLTSWA-NLSPKSTLLIMLFLPALFAFAYFF 197 (409)
T ss_pred CC----CceeccccCCCCcchhhhhhHHHHHhhhc-CCChhhHHHHHHHHHHHHHHHHHh
Confidence 32 23445566666666777766555555422 245566666555554444444443
No 285
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.93 E-value=6.8 Score=27.42 Aligned_cols=45 Identities=18% Similarity=0.111 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHHHH
Q 041698 81 TLTMFTSSLYLAALLSSLVASRVTRQF-GRKLSMFFGGILFLAGAL 125 (355)
Q Consensus 81 ~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~ 125 (355)
....-.++-+++..+.....||+.||| |.++..++..++.+.+.-
T Consensus 43 ~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG 88 (116)
T COG5336 43 AQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAG 88 (116)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 344555667777788888889999996 777776666655555443
No 286
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=82.57 E-value=41 Score=31.19 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=49.8
Q ss_pred HHhhhcccccccchhhhhhhcCC-CCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHH
Q 041698 141 LLLGFGIGFANQSVPLYLSEMAP-YRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALI 214 (355)
Q Consensus 141 ~l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~ 214 (355)
++.|+.....+..--..+.+.+| +++|+..++-+....++..++..++++.+.+ ..||.....+.-++.++
T Consensus 274 i~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~---~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 274 IAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIR---KYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHH
Confidence 44566666666666677778776 4557888888888888888777777777777 67898776655444433
No 287
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=81.94 E-value=17 Score=31.94 Aligned_cols=85 Identities=18% Similarity=0.059 Sum_probs=61.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHH----HHH-HH----hhHHHHHHHHHHHhhhc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGA----LLN-GF----AQAIWMLIVGRLLLGFG 146 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~----~~~-~~----~~~~~~l~~~r~l~G~~ 146 (355)
|-+.-|.+.+.+.|....++|+...-++.|.--.-+.+..-.++..++. ++. .| .++-+.+.++-++.|.-
T Consensus 39 G~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~L 118 (508)
T COG4262 39 GGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVL 118 (508)
T ss_pred CCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 5577899999999999999999999999886544444333333333221 111 23 35678888999999999
Q ss_pred ccccccchhhhhhh
Q 041698 147 IGFANQSVPLYLSE 160 (355)
Q Consensus 147 ~g~~~~~~~~~~~~ 160 (355)
.|...|..+.++..
T Consensus 119 VG~EiPL~mrml~~ 132 (508)
T COG4262 119 VGAEIPLLMRMLQR 132 (508)
T ss_pred HhcchHHHHHHHHH
Confidence 99999999888776
No 288
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=81.34 E-value=14 Score=30.71 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=12.4
Q ss_pred hhhhheecccCCccccccCC
Q 041698 336 MVSIYGVDKWGRRFLFLEGG 355 (355)
Q Consensus 336 ~~~g~l~d~~g~r~~~~~~~ 355 (355)
+.+-.++.|+..|++.+.|+
T Consensus 258 igGk~lAskIS~rtVt~~gg 277 (294)
T KOG2881|consen 258 IGGKYLASKISVRTVTLIGG 277 (294)
T ss_pred hhhHHHhhhheeEEEEEecc
Confidence 33335667777777776654
No 289
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=80.85 E-value=7.9 Score=28.06 Aligned_cols=47 Identities=21% Similarity=0.370 Sum_probs=34.3
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHH
Q 041698 79 SETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGAL 125 (355)
Q Consensus 79 ~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 125 (355)
....+...+...++..++..+.+.+.|..|.+..+.+......++.+
T Consensus 86 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (141)
T TIGR00880 86 GVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFI 132 (141)
T ss_pred hHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 34566677778888899999999999998887776665555444433
No 290
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=75.30 E-value=42 Score=27.09 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhhhhh
Q 041698 87 SSLYLAALLSSLVASRV 103 (355)
Q Consensus 87 s~~~l~~~~~~~~~g~l 103 (355)
....+++.+|..+.+.+
T Consensus 53 ~~~i~~F~~G~~~~~~i 69 (209)
T PF06912_consen 53 LLAILSFILGAFLAGLI 69 (209)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445556666666666
No 291
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=74.03 E-value=0.98 Score=39.17 Aligned_cols=108 Identities=18% Similarity=0.245 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHH--HHHHHHHHHHH----------HHhhHHHHHHHHHHHhhhccccc
Q 041698 84 MFTSSLYLAALLSSLVASRVTRQ-FGRKLSMFFG--GILFLAGALLN----------GFAQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 84 ~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~--~~~~~~~~~~~----------~~~~~~~~l~~~r~l~G~~~g~~ 150 (355)
.+...++++-.+|..+.++..-+ ..+|+....+ -+++.-..++| .+.++-+..++..++.|+.+|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 45667888888988887764221 1344443321 22222222222 12345577788899999999999
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHH
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYF 191 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~ 191 (355)
....+.+..+..++++|..+..+...+..+|..+|..++..
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~ 306 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL 306 (309)
T ss_dssp -HHHH------------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888888888888888776543
No 292
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=73.85 E-value=53 Score=27.62 Aligned_cols=104 Identities=13% Similarity=0.153 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHH----HHHHHHHHHHHHHHH-h----hHHHHHHHHHHHhhhccccc
Q 041698 81 TLTMFTSSLYLAALLSSLVASRVTRQ-FGRKLSMF----FGGILFLAGALLNGF-A----QAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 81 ~~~~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~----~~~~~~~~~~~~~~~-~----~~~~~l~~~r~l~G~~~g~~ 150 (355)
......-++..|..+|.+..|++... +.||+.+. .+.++..++.++... . .+...+++.-++.|...=+.
T Consensus 142 ~~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~Wgi 221 (267)
T PF07672_consen 142 IIPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGI 221 (267)
T ss_pred hhHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666777888888888988875 56666554 334444444444212 1 24666777888888764333
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHH
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIA 185 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~ 185 (355)
++....+ ..-++...+.+..-.++..+++|.++-
T Consensus 222 Q~ViL~l-PhEyK~~~pk~ig~~Fg~iWGfGY~~y 255 (267)
T PF07672_consen 222 QGVILNL-PHEYKGYNPKKIGIQFGLIWGFGYIFY 255 (267)
T ss_pred hHHHhcC-hhhhcCCCcceehhHHHHHHHHHHHHH
Confidence 4333222 222333334455556666667776554
No 293
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=66.29 E-value=1.2e+02 Score=28.50 Aligned_cols=70 Identities=17% Similarity=0.165 Sum_probs=46.7
Q ss_pred HHhhhcccccccchhhhhhhcCCC-CcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHH
Q 041698 141 LLLGFGIGFANQSVPLYLSEMAPY-RFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPAL 213 (355)
Q Consensus 141 ~l~G~~~g~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~ 213 (355)
+..|+........--..+.+.+|. +++...+|-+....++-.++-.++++.+.+ ..||+....+.-++.+
T Consensus 290 i~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir---~~GW~~~AlitPiv~l 360 (491)
T PF03219_consen 290 IAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIR---RFGWRTAALITPIVIL 360 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHhHHHHH
Confidence 445555555566666667777764 445777777777777777777778777777 6789887766543333
No 294
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=65.16 E-value=2.1 Score=40.35 Aligned_cols=68 Identities=13% Similarity=-0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHHcccccchHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 287 AVLIPFFQQFTGINVIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
..++..+.+......+..-.+.+.+++++++.++|++.+..-++.++..++..++.+|.+|-+.+-+|
T Consensus 7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g 74 (539)
T PF03137_consen 7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIG 74 (539)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeec
Confidence 33444444555555556666777788999999999999999999999999999999887776665444
No 295
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=63.75 E-value=46 Score=29.51 Aligned_cols=95 Identities=13% Similarity=0.101 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhchh--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhh
Q 041698 82 LTMFTSSLYLAALLSSLVASRVTRQFGRK--LSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLS 159 (355)
Q Consensus 82 ~~~~~s~~~l~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~ 159 (355)
-|..-.+..+..+++.+..|++--++.|. ..+.++.+..+...++++.+++.|...++.++-+.......+.+..-++
T Consensus 273 NG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA 352 (433)
T KOG3810|consen 273 NGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIA 352 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHH
Confidence 35666777788889999999998887765 3444445555555566777888888888888887777777777777777
Q ss_pred hcCCCCcccchhhHHHH
Q 041698 160 EMAPYRFRGALNIGFQL 176 (355)
Q Consensus 160 ~~~~~~~r~~~~~~~~~ 176 (355)
+....+.-|...|+...
T Consensus 353 ~nL~~e~~gLvFGiNTF 369 (433)
T KOG3810|consen 353 RNLSSELFGLVFGINTF 369 (433)
T ss_pred HhhhhhhheeeeehHHH
Confidence 77766666777776653
No 296
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=60.47 E-value=45 Score=26.33 Aligned_cols=24 Identities=4% Similarity=0.283 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhch
Q 041698 86 TSSLYLAALLSSLVASRVTRQFGR 109 (355)
Q Consensus 86 ~s~~~l~~~~~~~~~g~l~dr~Gr 109 (355)
+.-|.+++.+++.+.|++.||.-+
T Consensus 88 TgGyL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 88 TGGYLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhc
Confidence 355789999999999999999885
No 297
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=60.33 E-value=18 Score=30.29 Aligned_cols=52 Identities=15% Similarity=0.168 Sum_probs=38.2
Q ss_pred chHhcHHHHHHhcCCCC--cHHHHHHHHHHHHHHHHhhhhhheecccCCccccc
Q 041698 301 VIMFYAPVLFNTIGFGS--DASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFL 352 (355)
Q Consensus 301 ~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~ 352 (355)
......+.+..+.+.+. ...+.......+...++.++.|++.||.|||+.+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 73 (338)
T COG0477 20 LLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLI 73 (338)
T ss_pred hHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHH
Confidence 33444555555555554 36788888888999999999999999999886554
No 298
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=60.06 E-value=63 Score=30.13 Aligned_cols=60 Identities=8% Similarity=0.110 Sum_probs=44.4
Q ss_pred HHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 135 MLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 135 ~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
.+++...+.-+..-..+.+..++-+.+..|..-|+.|.+.+...|+|+-.-..+.-.+.+
T Consensus 407 lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD 466 (544)
T PF13000_consen 407 LVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD 466 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence 334455777777777888889999999999999999999998888886544444444433
No 299
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=56.74 E-value=61 Score=24.60 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q 041698 86 TSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLN 127 (355)
Q Consensus 86 ~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~ 127 (355)
+.-|.+|+.+.+.+.|++.+|..+++..........++..++
T Consensus 59 TgGyl~gf~~~a~i~g~~~~~~~~~~~~~~~~~~~~~g~~ii 100 (148)
T PF02632_consen 59 TGGYLLGFPLAALIIGLLAERLKRSRSFLRLILAMLVGLLII 100 (148)
T ss_pred CChHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 355789999999999999999887643333333334444333
No 300
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=55.12 E-value=1.3e+02 Score=25.90 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=34.9
Q ss_pred HHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhh
Q 041698 136 LIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFN 193 (355)
Q Consensus 136 l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~ 193 (355)
--..|.+.|+-. ..+.+.+++++-.+|++++--..--...+.+++.++.|+++-.+.
T Consensus 22 ~~~lr~~~g~~~-vlf~PGy~l~~~lfp~~~~l~~~er~~ls~glSi~~~~~~g~~l~ 78 (287)
T PF07760_consen 22 IPPLRVILGFPF-VLFLPGYALVAALFPRKHDLDGIERLALSVGLSIAIVPLIGLLLN 78 (287)
T ss_pred hhHHHHHHHHHH-HHHhccHHHHHHHccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777654 345667888888998665533333334445555566666665554
No 301
>PRK11469 hypothetical protein; Provisional
Probab=54.46 E-value=85 Score=24.96 Aligned_cols=45 Identities=18% Similarity=0.193 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHH-HHHHhhhhhhhhhchhHHHHHHHHHHHHHHH
Q 041698 81 TLTMFTSSLYLAAL-LSSLVASRVTRQFGRKLSMFFGGILFLAGAL 125 (355)
Q Consensus 81 ~~~~~~s~~~l~~~-~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 125 (355)
..........+... .|..++.++.+++|+|.-++-+.++..++.-
T Consensus 135 ~~~~~ig~~s~~~~~~G~~lG~~~g~~~g~~a~~lgG~iLI~iGi~ 180 (188)
T PRK11469 135 ATALAIGCATLIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQ 180 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444333333 4444555566778888777777777776653
No 302
>COG4769 Predicted membrane protein [Function unknown]
Probab=53.65 E-value=21 Score=27.30 Aligned_cols=51 Identities=24% Similarity=0.282 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Q 041698 89 LYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGF 145 (355)
Q Consensus 89 ~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 145 (355)
+.+...+.+.+.-++..++|+|..-+++. +..-++.+|..++++++++.+-
T Consensus 82 ~sfaG~i~S~L~m~~l~~f~~k~~S~lgi------S~mGaF~hNl~QLivas~Lv~~ 132 (181)
T COG4769 82 YSFAGAILSTLFMYFLYQFGPKYLSLLGI------SVMGAFTHNLGQLIVASFLVFT 132 (181)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEeeeeh------hhHHHHHHhHHHHHHHHHHHhc
Confidence 44555566666677888899887744443 2345688999999999998774
No 303
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=52.76 E-value=21 Score=29.97 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=38.2
Q ss_pred chHhcHHHHHHhcCCCCcHHHHHHHHHHHHHHHHhhhhhhe---------ecccCCccc
Q 041698 301 VIMFYAPVLFNTIGFGSDASLMSAVITGIVNVVATMVSIYG---------VDKWGRRFL 350 (355)
Q Consensus 301 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l---------~d~~g~r~~ 350 (355)
....|.-.++++.|.++.....++....+...+..++.|.+ .||+|||+.
T Consensus 35 cWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~ 93 (412)
T KOG4830|consen 35 CWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS 93 (412)
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence 33445556667788988888888988999999998888644 478888865
No 304
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=51.27 E-value=24 Score=33.58 Aligned_cols=65 Identities=22% Similarity=0.254 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCC
Q 041698 132 AIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIH 196 (355)
Q Consensus 132 ~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~ 196 (355)
|.++++=-.++.|++.........-+..+-+|++.|+.+.+++....++|..+...+.......+
T Consensus 457 Si~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t 521 (571)
T KOG1237|consen 457 SILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFST 521 (571)
T ss_pred eHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667777799999999999999999999999999999999999999999999998887665543
No 305
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=51.21 E-value=12 Score=30.52 Aligned_cols=99 Identities=10% Similarity=0.044 Sum_probs=59.0
Q ss_pred ccccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccc
Q 041698 71 TNQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 71 ~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 150 (355)
+.|.+|.+..+.--+.+.|.+|..+|.++.+.++.-+ ..+.. +. =.+.-.-.|+|.|..
T Consensus 130 I~ekYGldSpEgrGVl~~Yi~GTvfGtiffsllas~~-------------------a~~~~-fh-P~ALAMasGvGSgSM 188 (241)
T PF11299_consen 130 ISEKYGLDSPEGRGVLGVYIIGTVFGTIFFSLLASLL-------------------ASLGI-FH-PYALAMASGVGSGSM 188 (241)
T ss_pred eehhcCCCCccccceEEEeeehhhHHHHHHHHHHHHH-------------------HhccC-CC-HHHHHHHcCCcHHHH
Confidence 4455677666666666777777777777666554311 11000 00 011222368999999
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHH
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYF 191 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~ 191 (355)
+.++..-+.+.+| +......++..+...+....|-.+.-+
T Consensus 189 MaAa~~aL~~~~P-~~a~~i~A~AaaSNllt~~~G~Y~~if 228 (241)
T PF11299_consen 189 MAAASGALAAAYP-EMADQILAFAAASNLLTSVTGLYMSIF 228 (241)
T ss_pred HHHHHHHHHHHCc-chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999996 445566666666666655555444443
No 306
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=50.31 E-value=1.4e+02 Score=27.18 Aligned_cols=30 Identities=10% Similarity=-0.073 Sum_probs=17.8
Q ss_pred hcCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 041698 160 EMAPYRFRGALNIGFQLSITVGILIANVLN 189 (355)
Q Consensus 160 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~ 189 (355)
|...-++---+.++...+...|.+..++.+
T Consensus 315 ~~~~iDD~~~~~~vHg~~Gi~G~i~~glf~ 344 (404)
T TIGR03644 315 DKLKIDDPVGAISVHGVAGIWGTLVVPITN 344 (404)
T ss_pred HhCCCCCCcCchHhhhHHHHHHHHHHHHhc
Confidence 444445545666777766666666665554
No 307
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=49.62 E-value=38 Score=33.17 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=35.8
Q ss_pred ccCCcchhHHHHHHHH-HHHHHHHHhhhhhhhhh--chhHHHHHHHHHHHHHH
Q 041698 75 CQYDSETLTMFTSSLY-LAALLSSLVASRVTRQF--GRKLSMFFGGILFLAGA 124 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~-l~~~~~~~~~g~l~dr~--Grr~~l~~~~~~~~~~~ 124 (355)
++.+.+.+..+.+... .+.++|.+++|++..|+ ..|....+.++...++.
T Consensus 423 fg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l 475 (735)
T KOG3626|consen 423 FGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSL 475 (735)
T ss_pred cCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHH
Confidence 4999999999986655 45568999999999987 45555555544444433
No 308
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=46.87 E-value=54 Score=29.52 Aligned_cols=121 Identities=12% Similarity=0.079 Sum_probs=73.1
Q ss_pred cccCCcchhHHHHHHHHHHHHHHHHhhhhhhh------hhchhHHHHHHHHHHHHHHH-HHH-Hh-------hH-HHHHH
Q 041698 74 YCQYDSETLTMFTSSLYLAALLSSLVASRVTR------QFGRKLSMFFGGILFLAGAL-LNG-FA-------QA-IWMLI 137 (355)
Q Consensus 74 ~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~d------r~Grr~~l~~~~~~~~~~~~-~~~-~~-------~~-~~~l~ 137 (355)
|.|++.++.+++.-...-.+++.+...|++.. ++-|+-.+-+.......... ... +. .. +..++
T Consensus 294 e~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i 373 (510)
T KOG3574|consen 294 EHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLI 373 (510)
T ss_pred HcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHH
Confidence 33888888887764444444444555554433 22222222222211111111 111 11 12 33344
Q ss_pred HHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 138 VGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 138 ~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
....+.+...-..+...++..+...+|+..|..|++.+.-.++|.-.-..++..+.+
T Consensus 374 ~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D 430 (510)
T KOG3574|consen 374 TSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD 430 (510)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence 456677766667778888899999999999999999999999998877777777776
No 309
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=46.40 E-value=1.3e+02 Score=22.95 Aligned_cols=52 Identities=17% Similarity=0.062 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHH
Q 041698 131 QAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIA 185 (355)
Q Consensus 131 ~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~ 185 (355)
+++..++..-.+.|+|. ....+.+++.-+.+++-|..+|+-..-.+++.+.-
T Consensus 95 P~~~~~~~S~~~Fg~gl---lGisYGilSaSWD~~r~GSllG~~e~~~N~~r~~~ 146 (153)
T PF11947_consen 95 PPWAVLLVSLVFFGLGL---LGISYGILSASWDPEREGSLLGWEEFKRNWGRMWE 146 (153)
T ss_pred CchHHHHHHHHHHHHHH---HhhhhhhcccccCCCCCCCcccHHHHHHhHHHHHH
Confidence 34455555444444432 22444455555666767999999888888876654
No 310
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=45.70 E-value=66 Score=19.35 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHH
Q 041698 87 SSLYLAALLSSLVASRVTRQ-FGRKLSMFFGGILFLA 122 (355)
Q Consensus 87 s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~ 122 (355)
.....+..+.....|+..|+ ++.++...+..++.++
T Consensus 7 g~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~ 43 (55)
T PF09527_consen 7 GFTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGI 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 34455566666777788776 5775555444444433
No 311
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=44.95 E-value=96 Score=20.98 Aligned_cols=43 Identities=14% Similarity=0.107 Sum_probs=32.3
Q ss_pred HHHHHHHHhhhhhhhhhch-------hHHHHHHHHHHHHHHHHHHHhhHH
Q 041698 91 LAALLSSLVASRVTRQFGR-------KLSMFFGGILFLAGALLNGFAQAI 133 (355)
Q Consensus 91 l~~~~~~~~~g~l~dr~Gr-------r~~l~~~~~~~~~~~~~~~~~~~~ 133 (355)
.+...+.+.++++.+|..+ ++.+.++.++...+.++++..+|.
T Consensus 29 a~~ta~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~ig~~gGfl~ayqrS~ 78 (86)
T PF10785_consen 29 AGATAASPPLGYYMERSAPSRVGRGGGPAMRLAGAIGFFGGFLLAYQRSS 78 (86)
T ss_pred HHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666777777777654 788888888888888888876654
No 312
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=42.52 E-value=47 Score=23.39 Aligned_cols=50 Identities=12% Similarity=0.097 Sum_probs=40.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q 041698 80 ETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF 129 (355)
Q Consensus 80 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 129 (355)
...|-+..+|.-.+++.++++++..|+.-+-+.=.+|..+..++..+..+
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEe
Confidence 45577888999999999999999999998877777777777776655433
No 313
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=42.46 E-value=61 Score=31.61 Aligned_cols=62 Identities=23% Similarity=0.244 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhh
Q 041698 132 AIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFN 193 (355)
Q Consensus 132 ~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~ 193 (355)
+.++.+--.++.+++.........-+-.+-.|++.+....+++.+..++|..+...+..+-.
T Consensus 564 ~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~ 625 (654)
T TIGR00926 564 SILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFEN 625 (654)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555556677777777777777777778889999999999999999999988877766543
No 314
>PRK03612 spermidine synthase; Provisional
Probab=41.05 E-value=3.2e+02 Score=25.89 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=18.5
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhhhhhchhH
Q 041698 79 SETLTMFTSSLYLAALLSSLVASRVTRQFGRKL 111 (355)
Q Consensus 79 ~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~ 111 (355)
...++.......+|+.++..+.....+++...-
T Consensus 53 ~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e 85 (521)
T PRK03612 53 STVIGLMLFAMGVGALLSKYLLRDAAAGFVAVE 85 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 345555666666666666555555555555443
No 315
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=40.61 E-value=2.8e+02 Score=25.13 Aligned_cols=48 Identities=8% Similarity=-0.049 Sum_probs=26.0
Q ss_pred hhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHH
Q 041698 143 LGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNY 190 (355)
Q Consensus 143 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~ 190 (355)
.|+..|.........+.+...-++---+.++...+...|.+..++.+.
T Consensus 280 iG~iag~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~ 327 (399)
T PF00909_consen 280 IGAIAGLISYFGVSWLLKRLKIDDPVGAFAVHGVGGIWGTILTGLFAS 327 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS-HTTGHHHHCHHHHHHHHHHHHHHCC
T ss_pred hhhhHhhhhhhheecccceeEeccccceEeeeeccHHHHHHHHHHHhc
Confidence 344333333333334555555555556777777776666666665543
No 316
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=39.64 E-value=1.7e+02 Score=24.57 Aligned_cols=23 Identities=4% Similarity=-0.239 Sum_probs=11.6
Q ss_pred hHHHHhhhHHHHHHHHHHhcccc
Q 041698 201 WRLSLGGAMVPALIITVGSMILP 223 (355)
Q Consensus 201 w~~~~~~~~~~~~~~~~~~~~~~ 223 (355)
..+.-++..++.++....+.+++
T Consensus 114 ~~~Ln~~G~~l~~~~~~~f~fik 136 (254)
T PF07857_consen 114 SPWLNYIGVALVLVSGIIFSFIK 136 (254)
T ss_pred hhHHHHHHHHHHHHHHHheeeec
Confidence 44444555555555555555553
No 317
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=38.78 E-value=35 Score=32.16 Aligned_cols=75 Identities=13% Similarity=0.241 Sum_probs=35.0
Q ss_pred ccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCC-CCcHHH----HHHHHHHHHHHHHhhhhhheec
Q 041698 269 EHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGF-GSDASL----MSAVITGIVNVVATMVSIYGVD 343 (355)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~----~~~~~~~~~~~~~~~~~g~l~d 343 (355)
|.-..|++|.+..+. ++..++....|..... ....++...|+ ++...+ .......+.+.++...++++-.
T Consensus 248 KlvhgDVFR~P~~~~-lls~lvG~G~Qll~~~----~~~~~~a~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk 322 (521)
T PF02990_consen 248 KLVHGDVFRPPKHPM-LLSALVGTGIQLLFMA----LVTLFFAALGFLSPNNRGSLLTAAIILYALTSFIAGYVSARLYK 322 (521)
T ss_pred hhhhHHHhcCcCCch-HHHhHhcchhhhhHHH----HHHHHHHHhhhccccCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334567788776544 4444444444433222 22222333332 333223 3344445556666666666655
Q ss_pred ccCCc
Q 041698 344 KWGRR 348 (355)
Q Consensus 344 ~~g~r 348 (355)
.++.+
T Consensus 323 ~~~g~ 327 (521)
T PF02990_consen 323 SFGGK 327 (521)
T ss_pred HcCCC
Confidence 55543
No 318
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=38.20 E-value=3.4e+02 Score=25.34 Aligned_cols=76 Identities=13% Similarity=-0.176 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHH
Q 041698 115 FGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNY 190 (355)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~ 190 (355)
.+.+..++.+++..+..++..++-.--+..-..-.....+..++.---|+.+|..-..+..-...+-..+.-++..
T Consensus 338 ~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPiKvpl~~p~~~~~~~i~lvvip 413 (479)
T KOG1287|consen 338 PALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPIKVPLFIPILFLLICIFLVVIP 413 (479)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCEeeeeehHHHHHHHHHHHhhee
Confidence 3555555556666666655554433222221111223344455555566777765555544444443333333333
No 319
>PRK02237 hypothetical protein; Provisional
Probab=37.96 E-value=85 Score=22.23 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=39.4
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q 041698 80 ETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGF 129 (355)
Q Consensus 80 ~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 129 (355)
+..|-+..+|.-.+++.++++++..|+.-+-+.=.+|..+..++..+..+
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 34688889999999999999999999988777767777776666655433
No 320
>PRK14229 camphor resistance protein CrcB; Provisional
Probab=37.05 E-value=1.5e+02 Score=21.02 Aligned_cols=48 Identities=17% Similarity=-0.018 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCC
Q 041698 116 GGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAP 163 (355)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~ 163 (355)
..+...+++++.++......---.|.+.+.|.-+..++..++..|...
T Consensus 32 Tl~vNi~G~fllG~~~~~~~~~~~~~~l~tGf~GgfTTFSTf~~e~~~ 79 (108)
T PRK14229 32 TLIANLLGCFLIGVFYNHVESKEVYAILATGFCGGLTTFSTLNDELQR 79 (108)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHhhHccccccHHHHHHHHHH
Confidence 445666666666554322110113333444444556777777777764
No 321
>COG2119 Predicted membrane protein [Function unknown]
Probab=36.63 E-value=1.7e+02 Score=23.19 Aligned_cols=40 Identities=30% Similarity=0.464 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHH
Q 041698 86 TSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGAL 125 (355)
Q Consensus 86 ~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~ 125 (355)
.....+...++.+.+.++++|+..|++-.++.+++.+..+
T Consensus 140 ~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal 179 (190)
T COG2119 140 TLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFAL 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 3445577778888899999999999998888777766553
No 322
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=35.99 E-value=1.3e+02 Score=19.81 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=13.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhhcccccccc
Q 041698 122 AGALLNGFAQAIWMLIVGRLLLGFGIGFANQS 153 (355)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 153 (355)
+|.+.-.+......+.++-++.-+.....+|.
T Consensus 27 ~Gy~~q~~~~~~~~~~~g~~~~~lv~vP~Wp~ 58 (76)
T PF06645_consen 27 VGYITQSFSYTFYIYGAGVVLTLLVVVPPWPF 58 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhheeCCcHh
Confidence 33333333344444444444444443344443
No 323
>PRK10263 DNA translocase FtsK; Provisional
Probab=34.96 E-value=2.1e+02 Score=30.41 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhhc
Q 041698 181 GILIANVLNYFFNK 194 (355)
Q Consensus 181 G~~~~~~i~~~~~~ 194 (355)
|+++|..++..+..
T Consensus 143 GGIIG~lLs~lL~~ 156 (1355)
T PRK10263 143 GGVIGSLLSTTLQP 156 (1355)
T ss_pred cchHHHHHHHHHHH
Confidence 55555555555444
No 324
>PRK04201 zinc transporter ZupT; Provisional
Probab=34.19 E-value=2.9e+02 Score=23.35 Aligned_cols=14 Identities=7% Similarity=0.038 Sum_probs=8.1
Q ss_pred hhhhchhHHHHHHH
Q 041698 104 TRQFGRKLSMFFGG 117 (355)
Q Consensus 104 ~dr~Grr~~l~~~~ 117 (355)
..+..||+.+.++.
T Consensus 175 ~~~~s~~~~~~~~~ 188 (265)
T PRK04201 175 YATGSKKKAFLYSF 188 (265)
T ss_pred HccCcHHHHHHHHH
Confidence 34556777666543
No 325
>KOG3312 consensus Predicted membrane protein [Function unknown]
Probab=31.95 E-value=88 Score=23.42 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=17.3
Q ss_pred hccccCChhHHHhcCChHHHHHHHHHHhCCC
Q 041698 219 SMILPDTPNSIIERGRHEEAREELRKVRGVN 249 (355)
Q Consensus 219 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (355)
+..+.++.++...+.+.++..+.+++..+.+
T Consensus 27 WvlvYRt~~Yk~LKa~vdK~sKKLE~~K~~~ 57 (186)
T KOG3312|consen 27 WVLVYRTDKYKRLKAEVDKQSKKLEKKKEEN 57 (186)
T ss_pred EEEEEehhHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4445666666555555666555555554443
No 326
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=30.83 E-value=1.9e+02 Score=20.26 Aligned_cols=34 Identities=6% Similarity=-0.038 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHH
Q 041698 89 LYLAALLSSLVASRVTRQ-FGRKLSMFFGGILFLA 122 (355)
Q Consensus 89 ~~l~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~ 122 (355)
..+.-.+...+.|...|+ +|-++.+.+.+++.++
T Consensus 51 ~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv 85 (100)
T TIGR02230 51 SVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGV 85 (100)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 334445556666777775 6766655555444444
No 327
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=29.88 E-value=5.7e+02 Score=25.42 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=29.8
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhhhccc
Q 041698 107 FGRKLSMFFGGILFLAGALLNGFAQ-AIWMLIVGRLLLGFGIG 148 (355)
Q Consensus 107 ~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g 148 (355)
-||.+-++++.++++++++...+.. ..|.+...-++.+++.+
T Consensus 54 ~~R~~~l~it~~~f~i~sl~v~ll~~~p~~~~~~l~~~tf~~~ 96 (701)
T TIGR01667 54 TGRLKNLIITLSCFSIASFLVQLLFPKPWLFPFLLTLLTFGFI 96 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3678889999999999988877654 44555555566665544
No 328
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.44 E-value=48 Score=30.13 Aligned_cols=15 Identities=7% Similarity=0.151 Sum_probs=8.7
Q ss_pred ccchhhhhccCchhH
Q 041698 269 EHPWKNLLQKKYRPH 283 (355)
Q Consensus 269 ~~~~~~~~~~~~~~~ 283 (355)
|.-..+++|.+..+.
T Consensus 279 K~vHgDVFR~p~~~~ 293 (593)
T KOG1277|consen 279 KQVHGDVFRFPSHPL 293 (593)
T ss_pred eeeecccccCCCccH
Confidence 444566777665544
No 329
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=29.40 E-value=94 Score=21.56 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchh
Q 041698 86 TSSLYLAALLSSLVASRVTRQFGRK 110 (355)
Q Consensus 86 ~s~~~l~~~~~~~~~g~l~dr~Grr 110 (355)
.-.....+.+.+++.|.+.||..||
T Consensus 81 ~~~~~~~~l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 81 DWITFAVFLVVALVTGYLADRYRRQ 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3445677778889999999998876
No 330
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=29.22 E-value=1.7e+02 Score=19.13 Aligned_cols=61 Identities=11% Similarity=-0.034 Sum_probs=35.9
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCc
Q 041698 102 RVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRF 166 (355)
Q Consensus 102 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~ 166 (355)
+--|+-.|++-+.+.+.+-..+.++..+....+.+-..-+ + .+...|-..+.+++--++++
T Consensus 9 ~~~d~~~R~r~Y~i~M~~Ri~~fvlA~~~~~~~~la~~~~--~--~av~LPwvAVviAN~~~~~~ 69 (73)
T PF11298_consen 9 LSQDQRRRRRRYLIMMGIRIPCFVLAAVVYRLGWLAWAII--V--GAVPLPWVAVVIANARPPRR 69 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--H--HhcccchhheeeccCCCCCC
Confidence 3456777888888888888887777776665422222221 1 23455555556665544443
No 331
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=28.40 E-value=62 Score=24.80 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhhhhhheecccCCccccccC
Q 041698 322 MSAVITGIVNVVATMVSIYGVDKWGRRFLFLEG 354 (355)
Q Consensus 322 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~ 354 (355)
.-..+......+++++.+.+.+++|.|+.+++|
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg 73 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILG 73 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHH
Confidence 345556666777788888889999999888765
No 332
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=28.37 E-value=2.5e+02 Score=25.53 Aligned_cols=46 Identities=9% Similarity=-0.067 Sum_probs=25.1
Q ss_pred hhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHH
Q 041698 144 GFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLN 189 (355)
Q Consensus 144 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~ 189 (355)
|+..|........++.+...-++---+.++...+..+|.+..++.+
T Consensus 286 G~iag~~~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa 331 (403)
T TIGR00836 286 GLVAGVLCYLAVSKLKKKLKIDDPLDAFAVHGVGGIWGLIATGLFA 331 (403)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccchhhhhhHHHHHHHHHHhc
Confidence 4333333333344455555545545566777777666766666554
No 333
>PF07456 Hpre_diP_synt_I: Heptaprenyl diphosphate synthase component I; InterPro: IPR010898 This family contains component I of bacterial heptaprenyl diphosphate synthase (2.5.1.30 from EC) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7 [].
Probab=27.55 E-value=2.4e+02 Score=21.48 Aligned_cols=51 Identities=25% Similarity=0.264 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 041698 87 SSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLL 143 (355)
Q Consensus 87 s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 143 (355)
-.+.++..+.+...-.+..|..||+.=.++. +++-+.+||..+++++.++.
T Consensus 68 f~~Sl~Ggl~S~~vM~ll~~~~~~~~S~~gi------Si~Gai~HN~gQl~va~~i~ 118 (148)
T PF07456_consen 68 FLFSLAGGLLSLLVMALLKKLFKKKFSLIGI------SIAGAIAHNIGQLIVASLII 118 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 4466777777777777888887665544433 33456778888888888763
No 334
>PF05255 UPF0220: Uncharacterised protein family (UPF0220); InterPro: IPR007919 This family of proteins is functionally uncharacterised.
Probab=27.49 E-value=3e+02 Score=21.43 Aligned_cols=63 Identities=2% Similarity=-0.241 Sum_probs=34.1
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC---ccchHHHHhhhHHHHHHHHHHhcccc
Q 041698 161 MAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHG---GWGWRLSLGGAMVPALIITVGSMILP 223 (355)
Q Consensus 161 ~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~---~~~w~~~~~~~~~~~~~~~~~~~~~~ 223 (355)
..+.+++.+..+.+.++...+...--.+=+.+..... ...+...+++.++.+.+.+++.=.++
T Consensus 14 ~~~~~~~~~~~~~~~AGaLF~~gwWi~iDa~v~s~~~~~~~~~~~f~~~ipgI~stlgm~mvN~V~ 79 (166)
T PF05255_consen 14 WFDWSEKRNAIGSYVAGALFALGWWIFIDAAVYSKHANGSDVHVTFVDWIPGIFSTLGMFMVNSVS 79 (166)
T ss_pred CCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCccccceeeehHHHHHHHHHHhcccc
Confidence 3444455555555555554444444344443332111 12577788888888877766554443
No 335
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.96 E-value=50 Score=28.80 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 041698 173 GFQLSITVGILIANVLNYFF 192 (355)
Q Consensus 173 ~~~~~~~~G~~~~~~i~~~~ 192 (355)
.++.+.+.|++++.+++..+
T Consensus 218 vyY~sig~~gfl~~IlvLaI 237 (372)
T KOG2927|consen 218 VYYLSIGAGGFLAFILVLAI 237 (372)
T ss_pred eeeeecchhHHHHHHHHHHH
Confidence 33334455555555554443
No 336
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=25.93 E-value=22 Score=26.22 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=6.0
Q ss_pred HHHHhhhHHHHHHH
Q 041698 202 RLSLGGAMVPALII 215 (355)
Q Consensus 202 ~~~~~~~~~~~~~~ 215 (355)
||++++..++.+++
T Consensus 1 RW~l~~iii~~i~l 14 (130)
T PF12273_consen 1 RWVLFAIIIVAILL 14 (130)
T ss_pred CeeeHHHHHHHHHH
Confidence 34555444443333
No 337
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=25.90 E-value=3.1e+02 Score=21.98 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=21.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhc
Q 041698 167 RGALNIGFQLSITVGILIANVLNYFFNK 194 (355)
Q Consensus 167 r~~~~~~~~~~~~~G~~~~~~i~~~~~~ 194 (355)
.+++..+...+..+|.++|.++..++..
T Consensus 139 ~~rA~~~~~~~L~~G~~lGs~l~~~l~~ 166 (194)
T PF11833_consen 139 LGRAFLWTLGGLVVGLILGSLLASWLPV 166 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3788888877888888888888777654
No 338
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=25.88 E-value=1.7e+02 Score=18.00 Aligned_cols=44 Identities=9% Similarity=0.160 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCC
Q 041698 179 TVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDT 225 (355)
Q Consensus 179 ~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~ 225 (355)
-+|.+++.+.+..... .++++....+..+.+++...+...+|++
T Consensus 12 il~~vvgyI~ssL~~~---~~n~~~~~Ii~vi~~i~~~~~~~~i~~~ 55 (57)
T PF11151_consen 12 ILGEVVGYIGSSLTGV---TYNFTTAAIIAVIFGIIVANIIAVIPKK 55 (57)
T ss_pred HHHHHHHHHHHHHhCC---CCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3455555444333322 4567777666666666665555555554
No 339
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=24.98 E-value=6.9e+02 Score=24.84 Aligned_cols=48 Identities=21% Similarity=0.318 Sum_probs=32.1
Q ss_pred hhhhhh----hchhHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhccc
Q 041698 101 SRVTRQ----FGRKLSMFFGGILFLAGALLNGFA-QAIWMLIVGRLLLGFGIG 148 (355)
Q Consensus 101 g~l~dr----~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g 148 (355)
+-++|. -||.+-++++.++++++++...+. +..|.+..+-++.+++.+
T Consensus 44 ~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~~p~lf~~~l~~~tf~~~ 96 (704)
T TIGR01666 44 AALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFGKPWLFAVGLTVSTFGFI 96 (704)
T ss_pred hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 445553 477788889999998888877765 445566666666665543
No 340
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=24.92 E-value=1e+02 Score=15.88 Aligned_cols=9 Identities=11% Similarity=0.608 Sum_probs=2.7
Q ss_pred hccccCChh
Q 041698 219 SMILPDTPN 227 (355)
Q Consensus 219 ~~~~~e~~~ 227 (355)
..+++|+||
T Consensus 20 AI~FRePPr 28 (29)
T PF01405_consen 20 AIFFREPPR 28 (29)
T ss_dssp HHHSS----
T ss_pred hhhccCCCC
Confidence 345677774
No 341
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=24.80 E-value=4.1e+02 Score=22.41 Aligned_cols=56 Identities=16% Similarity=-0.094 Sum_probs=35.5
Q ss_pred ccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhh
Q 041698 147 IGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGG 207 (355)
Q Consensus 147 ~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~ 207 (355)
.|.-.....+.+.+..|+++|-++.-+--.+..+=..+.-..+.++.+ -|.+.+.+
T Consensus 30 L~iDN~iviai~~~~Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~-----l~~~l~~~ 85 (254)
T COG0861 30 LGIDNAIVIAILASKLPPKQRKKALFIGLAGALVLRIILLASISWLLT-----LTQPLLYI 85 (254)
T ss_pred HHhhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHH
Confidence 345566777888999999998777655444444444444455555555 35666665
No 342
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=24.64 E-value=3.4e+02 Score=21.17 Aligned_cols=99 Identities=13% Similarity=0.233 Sum_probs=58.7
Q ss_pred hhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHH--HHHHHHhhhhhhhhh-c
Q 041698 32 MGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLA--ALLSSLVASRVTRQF-G 108 (355)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~--~~~~~~~~g~l~dr~-G 108 (355)
+.++.+.+.++-++|...+.++... ++..+..|.+.++..++ ..+++++.-.+-.|+ |
T Consensus 37 v~yl~y~f~FT~v~P~~ll~Pf~~g-------------------~wk~t~~G~~igi~~~gv~Si~aAllY~~~l~k~~g 97 (173)
T PF11085_consen 37 VRYLAYFFHFTEVGPNFLLEPFALG-------------------DWKNTWLGNLIGIVFIGVFSIVAALLYYALLKKFKG 97 (173)
T ss_pred HHHHHHHhcccccccChhhhhhhcc-------------------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455566777777665444444322 34566777776665544 345666655555554 6
Q ss_pred hhHHHHHHHHHHHHHHHHHH-H-----------hhHHHHHHHHHHHhhhcccc
Q 041698 109 RKLSMFFGGILFLAGALLNG-F-----------AQAIWMLIVGRLLLGFGIGF 149 (355)
Q Consensus 109 rr~~l~~~~~~~~~~~~~~~-~-----------~~~~~~l~~~r~l~G~~~g~ 149 (355)
.-.-++.|.+++++...+.. + .++...-+...++.|+..|-
T Consensus 98 ~W~Gi~YG~~~W~ivF~~lnP~fp~~~~~~~l~~nTiiT~~CiyiLyGlFIGY 150 (173)
T PF11085_consen 98 PWPGILYGLAWWAIVFFVLNPIFPMIKPVTELDWNTIITTLCIYILYGLFIGY 150 (173)
T ss_pred cchHHHHHHHHHHHHHHHhcccccCChhhhhCchhHHHHHHHHHHHHHHHhce
Confidence 66778888888877766552 1 13445555566777877653
No 343
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=24.62 E-value=3.1e+02 Score=20.70 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=34.0
Q ss_pred ccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHH-HHHHHHHH
Q 041698 73 QYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMF-FGGILFLA 122 (355)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~~ 122 (355)
-|.|++....-....+.++.-.++-++...++|+.++-..+. ++.++..+
T Consensus 65 VeiGi~EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~~~~~lg~~ 115 (150)
T COG3086 65 VELGIEEKSLLKSALLVYIFPLVGLFLGAILAQYLFFSELIVIFGAFLGLA 115 (150)
T ss_pred EEEccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 356777666666666777888888888899999988765543 33333333
No 344
>PRK14230 camphor resistance protein CrcB; Provisional
Probab=23.77 E-value=2.9e+02 Score=20.04 Aligned_cols=50 Identities=20% Similarity=-0.020 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCC
Q 041698 114 FFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAP 163 (355)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~ 163 (355)
.-..+...+++++.++......---.|.+.+.|.-+..++..++..|...
T Consensus 34 ~gTl~VNi~GsfllG~~~~~~~~~~~~~~l~tGflGgfTTFSTf~~e~~~ 83 (119)
T PRK14230 34 TGNLFANWTGALLIGIFAETVNHPQWKLLLITGFLGSLTTLSGFSLETVT 83 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHhchHhhHHHHHHHHHH
Confidence 34566677777776654322100012333344433445666666666654
No 345
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=23.25 E-value=4.5e+02 Score=24.21 Aligned_cols=19 Identities=26% Similarity=0.301 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 041698 113 MFFGGILFLAGALLNGFAQ 131 (355)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~ 131 (355)
+++|+.+...-.++.+++.
T Consensus 329 ~LVGlAl~lFYlLLLSlSE 347 (430)
T PF06123_consen 329 LLVGLALVLFYLLLLSLSE 347 (430)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444443
No 346
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=22.73 E-value=1.5e+02 Score=26.24 Aligned_cols=45 Identities=9% Similarity=0.186 Sum_probs=38.1
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHH
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILF 120 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 120 (355)
++..++++....++.++..+.+.+.|.++.++||-.....+.+..
T Consensus 306 ~~Gv~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~ 350 (390)
T KOG3097|consen 306 ALGVSRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVH 350 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHH
Confidence 456678999999999999999999999999999988877665543
No 347
>PRK11715 inner membrane protein; Provisional
Probab=22.35 E-value=4.4e+02 Score=24.29 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=7.1
Q ss_pred cchhhHHHHHHHHHHHHH
Q 041698 168 GALNIGFQLSITVGILIA 185 (355)
Q Consensus 168 ~~~~~~~~~~~~~G~~~~ 185 (355)
++..+...++..+-..++
T Consensus 356 gF~~AYliAa~a~v~li~ 373 (436)
T PRK11715 356 GFTLAYLIAALACVLLIG 373 (436)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 444444443333333333
No 348
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=21.43 E-value=6.6e+02 Score=25.38 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHH
Q 041698 174 FQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVP 211 (355)
Q Consensus 174 ~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~ 211 (355)
...+..++.++..+++.++.. ..+|...+++.+++
T Consensus 106 l~~~M~lT~livAL~a~~Li~---GL~~~~ALLLGAIL 140 (810)
T TIGR00844 106 LVPVMTSGWLVIALFVWILVP---GLNFPASLLMGACI 140 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHc---CCCHHHHHHHHhhh
Confidence 333444555555555544422 35676666555544
No 349
>COG1288 Predicted membrane protein [Function unknown]
Probab=21.04 E-value=4e+02 Score=24.57 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=18.3
Q ss_pred ccchHHHHhhhHHHHHHHHHHhcc--ccCChh
Q 041698 198 GWGWRLSLGGAMVPALIITVGSMI--LPDTPN 227 (355)
Q Consensus 198 ~~~w~~~~~~~~~~~~~~~~~~~~--~~e~~~ 227 (355)
..+||...++......+..+.++. ++++|.
T Consensus 215 G~~~Riv~~v~~~~~~i~y~~~Ya~KvkkdP~ 246 (481)
T COG1288 215 GMGLRIVVWVVFTLISIIYVYWYASKVKKDPT 246 (481)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 478999998877665554444332 444443
No 350
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=20.01 E-value=4.5e+02 Score=21.03 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=19.2
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhh---------hhhhhhhchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVA---------SRVTRQFGRK 110 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~---------g~l~dr~Grr 110 (355)
+.+..+.......+.+..++-+.++ +...+|+||+
T Consensus 122 ~~s~~~l~v~l~vF~ilv~v~c~la~~l~~~p~i~~~leryg~~ 165 (191)
T PF03596_consen 122 SLSLAELIVILIVFLILVGVWCFLAYKLARIPIIAEFLERYGRW 165 (191)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHhccc
Confidence 4455666666666665555544443 3445566654
Done!