Query 041698
Match_columns 355
No_of_seqs 298 out of 2080
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 16:37:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041698.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041698hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.7E-36 5.7E-41 278.7 23.6 317 21-353 8-347 (491)
2 3o7q_A L-fucose-proton symport 100.0 8E-31 2.7E-35 237.3 15.0 276 24-353 25-330 (438)
3 1pw4_A Glycerol-3-phosphate tr 100.0 1.7E-30 5.7E-35 236.0 11.9 290 22-353 25-325 (451)
4 2gfp_A EMRD, multidrug resista 99.9 2.7E-28 9.1E-33 216.3 7.3 236 73-348 28-265 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.9 8.9E-25 3.1E-29 200.5 17.8 145 72-219 46-193 (491)
6 2xut_A Proton/peptide symporte 99.9 3.4E-20 1.1E-24 171.5 20.5 141 77-220 51-196 (524)
7 2cfq_A Lactose permease; trans 99.8 5.5E-21 1.9E-25 171.6 4.4 247 75-353 38-294 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 3.3E-13 1.1E-17 122.0 14.9 145 75-222 283-433 (451)
9 2cfq_A Lactose permease; trans 99.4 2.7E-13 9.1E-18 121.5 8.1 147 78-227 257-405 (417)
10 4aps_A DI-OR tripeptide H+ sym 99.4 3.7E-12 1.2E-16 116.5 12.4 141 76-220 315-469 (491)
11 3o7q_A L-fucose-proton symport 99.4 7.2E-12 2.5E-16 112.8 13.7 140 76-221 291-431 (438)
12 4gc0_A D-xylose-proton symport 99.2 8.1E-11 2.8E-15 107.5 13.8 151 76-226 308-467 (491)
13 2gfp_A EMRD, multidrug resista 99.0 1.3E-10 4.4E-15 102.4 2.6 127 76-208 231-362 (375)
14 2xut_A Proton/peptide symporte 98.8 6.1E-09 2.1E-13 95.9 8.1 140 81-221 336-501 (524)
15 2g9p_A Antimicrobial peptide l 68.8 2.4 8.1E-05 19.4 1.2 14 99-112 2-15 (26)
16 4dve_A Biotin transporter BIOY 34.5 99 0.0034 23.7 6.0 25 86-110 99-123 (198)
17 3arc_T Photosystem II reaction 21.5 76 0.0026 16.1 2.1 8 220-227 21-28 (32)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.7e-36 Score=278.68 Aligned_cols=317 Identities=28% Similarity=0.528 Sum_probs=255.2
Q ss_pred hhHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhh
Q 041698 21 PYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVA 100 (355)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~ 100 (355)
++.+.++++++++.+++|||.++++.+ +|.+.+++.... ..+.+.+..+.+++.+++.+|..+|++++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~--~~~~~~~~~~~~----------~~~~~~~~~~~g~~~s~~~~G~~iG~~~~ 75 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGT--VESLNTVFVAPQ----------NLSESAANSLLGFCVASALIGCIIGGALG 75 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGT--HHHHHHHHTGGG----------CCCHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCC----------CCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778889999999999999877 777777663211 11114456788999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHH------------------HhhHHHHHHHHHHHhhhcccccccchhhhhhhcC
Q 041698 101 SRVTRQFGRKLSMFFGGILFLAGALLNG------------------FAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMA 162 (355)
Q Consensus 101 g~l~dr~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~ 162 (355)
|+++||+|||++++++.+++.+++++++ +++|+++++++|+++|++.|+..+....+++|+.
T Consensus 76 G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~ 155 (491)
T 4gc0_A 76 GYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELA 155 (491)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999998 4789999999999999999999999999999999
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCC-----ccchHHHHhhhHHHHHHHHHHhccccCChhHHHhcCChHH
Q 041698 163 PYRFRGALNIGFQLSITVGILIANVLNYFFNKIHG-----GWGWRLSLGGAMVPALIITVGSMILPDTPNSIIERGRHEE 237 (355)
Q Consensus 163 ~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~-----~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 237 (355)
|+++|++..++...+..+|.++++.++.......+ ..+||+.+.+..++.++.++..+++||+|+|+..+++.++
T Consensus 156 p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~ 235 (491)
T 4gc0_A 156 PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQ 235 (491)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHH
T ss_pred CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhH
Confidence 99999999999999999999999998887764321 3579999999888888888888899999999999999999
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHhcCCCC
Q 041698 238 AREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNTIGFGS 317 (355)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 317 (355)
+.+.+++...+++.+++..+..+..+.+++.. .... ....++.........+.+..+.+.+..+.+.+.+..+.+.
T Consensus 236 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (491)
T 4gc0_A 236 AEGILRKIMGNTLATQAVQEIKHSLDHGRKTG-GRLL---MFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAST 311 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THHH---HSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCH
T ss_pred HHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh-hHHH---HhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCc
Confidence 99988877654433333322222222221111 1111 1223445566666677777888888899999998888888
Q ss_pred cHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 318 DASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
..........++..+++.++++++.||+|||+.++.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~ 347 (491)
T 4gc0_A 312 DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII 347 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhcc
Confidence 888888888899999999999999999999987654
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97 E-value=8e-31 Score=237.27 Aligned_cols=276 Identities=11% Similarity=0.119 Sum_probs=208.3
Q ss_pred HHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhhhh
Q 041698 24 LVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVASRV 103 (355)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l 103 (355)
+.....+++..+..+++....++. +|.+.+++ |++..+.+++.+++.+++.+++++.|++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------g~s~~~~g~~~~~~~~~~~i~~~~~G~l 84 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDIL--LPQFQQAF------------------TLTNFQAGLIQSAFYFGYFIIPIPAGIL 84 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHS------------------CCCSHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334445555667777776665555 55555554 9999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHH
Q 041698 104 TRQFGRKLSMFFGGILFLAGALLN---GFAQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITV 180 (355)
Q Consensus 104 ~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 180 (355)
+||+|||++++++.++.+++.+++ +++++++.++++|++.|++.+...+...+++.|++|+++|++++++...+.++
T Consensus 85 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 164 (438)
T 3o7q_A 85 MKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF 164 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999 88899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh-cCCCc----------------------cchHHHHhhhHHHHHHHHHHhc--cccCChhHHHhcCCh
Q 041698 181 GILIANVLNYFFN-KIHGG----------------------WGWRLSLGGAMVPALIITVGSM--ILPDTPNSIIERGRH 235 (355)
Q Consensus 181 G~~~~~~i~~~~~-~~~~~----------------------~~w~~~~~~~~~~~~~~~~~~~--~~~e~~~~~~~~~~~ 235 (355)
|..++|.+++.+. +..+. .+||+.|++.+++.++..+..+ ..||+++.. ++.
T Consensus 165 g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~ 241 (438)
T 3o7q_A 165 GAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HSD 241 (438)
T ss_dssp HHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CCC
T ss_pred HHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---ccc
Confidence 9999999999988 43210 0199999877766555444433 346554310 000
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHH-HHh-c
Q 041698 236 EEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVL-FNT-I 313 (355)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~ 313 (355)
+ ++++.+.+++++++.+..+. ..+..+...........+.|.+ .++ +
T Consensus 242 ~---------------------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (438)
T 3o7q_A 242 A---------------------------KQGSFSASLSRLARIRHWRW----AVLAQFCYVGAQTACWSYLIRYAVEEIP 290 (438)
T ss_dssp S---------------------------STTSHHHHHHHHTTCSHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred c---------------------------cccchhhhHHHHHhChHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 0 00111123444554433222 2222222333344555667766 666 4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 314 GFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 314 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
|+++.+++.......++.+++.++.++++||++||+.+..
T Consensus 291 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~ 330 (438)
T 3o7q_A 291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAA 330 (438)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 9999999999999999999999999999999999987654
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.97 E-value=1.7e-30 Score=236.04 Aligned_cols=290 Identities=17% Similarity=0.112 Sum_probs=214.4
Q ss_pred hHHHHHHHHhhhhhhhhccccccccccCchhhhhhhcccccccccccccccccccCCcchhHHHHHHHHHHHHHHHHhhh
Q 041698 22 YVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNQYCQYDSETLTMFTSSLYLAALLSSLVAS 101 (355)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g 101 (355)
..+.......++.+..+++...+++. +|. +.+++ .+..+.+++.+++.++..++++++|
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------------~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G 83 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALA--MPY------------------LVEQG-FSRGDLGFALSGISIAYGFSKFIMG 83 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHH--HHH------------------TTSST-TCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHH------------------HHHHh-ccHhHHHHHHHHHHHHHHHHHHhHH
Confidence 34556666667777777766665433 222 25566 7899999999999999999999999
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHhhhcccccccchhhhhhhcCCCCcccchhhHHHHH
Q 041698 102 RVTRQFGRKLSMFFGGILFLAGALLNGF----AQAIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLS 177 (355)
Q Consensus 102 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 177 (355)
+++||+|||++++++.++.+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++...+
T Consensus 84 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 163 (451)
T 1pw4_A 84 SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCA 163 (451)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCccc-hHHHHhhhHHHHHHHHHH-hccccCChhHHHhcCChHHHHHHHHHHhCCCccHHHH
Q 041698 178 ITVGILIANVLNYFFNKIHGGWG-WRLSLGGAMVPALIITVG-SMILPDTPNSIIERGRHEEAREELRKVRGVNDVEEEF 255 (355)
Q Consensus 178 ~~~G~~~~~~i~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (355)
..+|.+++|.+++.+.+ ..+ ||+.|++.+++.++..+. .+++||+|++...+++.++. ++.+.+.
T Consensus 164 ~~~g~~~g~~~~~~l~~---~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 230 (451)
T 1pw4_A 164 HNVGGGIPPLLFLLGMA---WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK----------NDYPDDY 230 (451)
T ss_dssp HHHHHTSHHHHHHHHHH---HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------CC-----
T ss_pred HHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc----------ccccccc
Confidence 99999999999998776 467 999999988877665444 46678887642211111100 0000000
Q ss_pred HHHHHHHHHhhccccc--hhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHHh-cCCCCcHHHHHHHHHHHHHH
Q 041698 256 NDLVAASEASRQVEHP--WKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFNT-IGFGSDASLMSAVITGIVNV 332 (355)
Q Consensus 256 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~ 332 (355)
.+ +++++....+ .++.+++ +. ++...+..+...........+.|.+.++ +|+++.+++.......++.+
T Consensus 231 ---~~-~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 302 (451)
T 1pw4_A 231 ---NE-KAEQELTAKQIFMQYVLPN---KL-LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGI 302 (451)
T ss_dssp ------------CCTHHHHHHTSSC---HH-HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHH
T ss_pred ---hh-hhhcccccccchHHHHHcC---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 00 0000111111 1222222 22 3333333344444455667777877776 89999999999999999999
Q ss_pred HHhhhhhheeccc--CCcccccc
Q 041698 333 VATMVSIYGVDKW--GRRFLFLE 353 (355)
Q Consensus 333 ~~~~~~g~l~d~~--g~r~~~~~ 353 (355)
++.++.+++.||+ +||+.+..
T Consensus 303 ~~~~~~g~l~~~~~~~~~~~~~~ 325 (451)
T 1pw4_A 303 PGTLLCGWMSDKVFRGNRGATGV 325 (451)
T ss_dssp HHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchhHHH
Confidence 9999999999999 88877643
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.95 E-value=2.7e-28 Score=216.29 Aligned_cols=236 Identities=14% Similarity=0.191 Sum_probs=189.0
Q ss_pred ccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccccc
Q 041698 73 QYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQ 152 (355)
Q Consensus 73 ~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~ 152 (355)
+++|.+..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++.+++++++.+++.|++.|++.+...+
T Consensus 28 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~ 107 (375)
T 2gfp_A 28 RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGV 107 (375)
T ss_dssp TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhh
Confidence 33499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHH-HhccccCChhHHHh
Q 041698 153 SVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITV-GSMILPDTPNSIIE 231 (355)
Q Consensus 153 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~ 231 (355)
...+++.|++|+++|++++++...+..+|..++|.+++.+.+ ..+||+.|++.+++.++..+ ..+++||++++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 182 (375)
T 2gfp_A 108 MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT---MWNWRACYLFLLVLCAGVTFSMARWMPETRPVD-- 182 (375)
T ss_dssp HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT--
T ss_pred hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC--
Confidence 999999999999999999999999999999999999999987 56899999988887776655 345678876421
Q ss_pred cCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHHHHH
Q 041698 232 RGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPVLFN 311 (355)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (355)
++ +++.++++++.++++. ++...+..+...........+.|.+.+
T Consensus 183 -~~------------------------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (375)
T 2gfp_A 183 -AP------------------------------RTRLLTSYKTLFGNSG----FNCYLLMLIGGLAGIAAFEACSGVLMG 227 (375)
T ss_dssp -CC------------------------------CCCTTTCSTHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCSCSSH
T ss_pred -cc------------------------------cccHHHHHHHHhcCcc----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0111223344443322 222222222223333444555565554
Q ss_pred h-cCCCCcHHHHHHHHHHHHHHHHhhhhhheecccCCc
Q 041698 312 T-IGFGSDASLMSAVITGIVNVVATMVSIYGVDKWGRR 348 (355)
Q Consensus 312 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r 348 (355)
+ .|+++.+.+.......++.+++.++.+++.||.+++
T Consensus 228 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~ 265 (375)
T 2gfp_A 228 AVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL 265 (375)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 788888999999999999999999999999998873
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.93 E-value=8.9e-25 Score=200.55 Aligned_cols=145 Identities=18% Similarity=0.226 Sum_probs=132.8
Q ss_pred cccccCCcchhHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccc
Q 041698 72 NQYCQYDSETLTMFTSSLYLAALLSSLVASRVTRQ-FGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 150 (355)
++|+|++..+.+++.+++.++..+++++.|+++|| +|||+++.++.++.+++.++++++++++.++++|+++|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 45569999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhcCCCCc--ccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh
Q 041698 151 NQSVPLYLSEMAPYRF--RGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS 219 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 219 (355)
.+...+++.|++|+++ |+.+.++++.+.++|..++|.+++.+.+ ..+||+.|++.++..++..+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE---AAGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSCHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 6778888999999999999999999987 5789999998876665554443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.85 E-value=3.4e-20 Score=171.49 Aligned_cols=141 Identities=14% Similarity=0.233 Sum_probs=129.4
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhhhcccccccch
Q 041698 77 YDSETLTMFTSSLYLAALLSSLVASRVTRQF-GRKLSMFFGGILFLAGALLNGFAQ-AIWMLIVGRLLLGFGIGFANQSV 154 (355)
Q Consensus 77 ~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~ 154 (355)
++..+.+++.+++.++..+++++.|+++||+ |||+++.++.++.+++.++.++++ +++.++++|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 8999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred hhhhhhcCCCCcccchhhH---HHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc
Q 041698 155 PLYLSEMAPYRFRGALNIG---FQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 155 ~~~~~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
.+++.|++|+++|+++.+. ...+.++|..++|.+++.+.+ ..+||+.|++.+++.++..+..+
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~---~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK---NFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH---TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877666 999999999999999999887 56899999988877665554443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.81 E-value=5.5e-21 Score=171.64 Aligned_cols=247 Identities=13% Similarity=0.053 Sum_probs=149.9
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHH---HHHHhhHH-HHHHHHHHHhhhccccc
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGAL---LNGFAQAI-WMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~---~~~~~~~~-~~l~~~r~l~G~~~g~~ 150 (355)
+|+|..+.+++.+++.+++.++++++|+++||+|||++++++..+.+++.. ...+++.. ..+...+.+.|++.+..
T Consensus 38 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 117 (417)
T 2cfq_A 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC 117 (417)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999999999999999999998887765322 11233222 12445677777766655
Q ss_pred ccchhhhhhhcCCC--CcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccccCChhH
Q 041698 151 NQSVPLYLSEMAPY--RFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMILPDTPNS 228 (355)
Q Consensus 151 ~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~ 228 (355)
.+.......++.++ ++|+...+....+..+|..++|.+++.+.+ .+||+.|++.++..++..+..++.+|++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T 2cfq_A 118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALILAVLLFFAKTDAPS 193 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC
T ss_pred HhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHHHHHcCccccc
Confidence 55545555555433 345777777777788899999999998875 479999998777655554444444433311
Q ss_pred HHhcCChHHHHHHHHHHhCCCccHHHHHHHHHHHHHhhccccchhhhhccCchhHHHHHHHHHHHHHcccccchHhcHHH
Q 041698 229 IIERGRHEEAREELRKVRGVNDVEEEFNDLVAASEASRQVEHPWKNLLQKKYRPHLTMAVLIPFFQQFTGINVIMFYAPV 308 (355)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (355)
+.+.++.. +.+ .++....+++++++++..+. .... .+.....+.....+.|.
T Consensus 194 ---~~~~~~~~-------~~~--------------~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~ 245 (417)
T 2cfq_A 194 ---SATVANAV-------GAN--------------HSAFSLKLALELFRQPKLWF---LSLY-VIGVSCTYDVFDQQFAN 245 (417)
T ss_dssp ---SSCSSSSS-------SSC--------------CCCCCHHHHHHHTTCHHHHH---HHHH-HHHHHHHHHHHHHHHHH
T ss_pred ---cccccccc-------ccc--------------cccccHHHHHHHhcCCchhh---HHHH-HHHHHHHHHHHHHHHHH
Confidence 00000000 000 00000011233333322221 1111 11111112223334555
Q ss_pred HHHh-cC---CCCcHHHHHHHHHHHHHHHHhhhhhheecccCCcccccc
Q 041698 309 LFNT-IG---FGSDASLMSAVITGIVNVVATMVSIYGVDKWGRRFLFLE 353 (355)
Q Consensus 309 ~~~~-~g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 353 (355)
++.+ ++ .+....+.......++.+++.++.++++||++||+.+..
T Consensus 246 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~ 294 (417)
T 2cfq_A 246 FFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLL 294 (417)
T ss_dssp HHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHH
Confidence 5443 22 224445677777888889999999999999999987653
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.50 E-value=3.3e-13 Score=121.96 Aligned_cols=145 Identities=11% Similarity=0.065 Sum_probs=125.5
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhhhhh--chhHHHHHHHHHHH-HHHHHHHHh--hHHHHHHHHHHHhhhcccc
Q 041698 75 CQYDSETLTMFTSSLYLAALLSSLVASRVTRQF--GRKLSMFFGGILFL-AGALLNGFA--QAIWMLIVGRLLLGFGIGF 149 (355)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~g~ 149 (355)
+|++..+.+++.+...++..++.++.|+++||+ |||+.+.++..+.. ++.++..+. .+.+.+.+..++.|++.+.
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 362 (451)
T 1pw4_A 283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 362 (451)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 488999999999999999999999999999999 99999888877776 666666555 3778888888999999888
Q ss_pred cccchhhhhhhcCCCCcccchhhHHHHHHHH-HHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhccc
Q 041698 150 ANQSVPLYLSEMAPYRFRGALNIGFQLSITV-GILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSMIL 222 (355)
Q Consensus 150 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 222 (355)
..+....++.|.+|+++|+++.++......+ |..++|.+.+.+.+ ..+|+..|++.++..++..+..+++
T Consensus 363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD---FFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999 99999999999988 5679999988887776665555443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.42 E-value=2.7e-13 Score=121.54 Aligned_cols=147 Identities=16% Similarity=0.166 Sum_probs=121.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchhhh
Q 041698 78 DSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVPLY 157 (355)
Q Consensus 78 s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 157 (355)
+....++..+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888889999999999999999999999999988888887777777788888888888888777677777889
Q ss_pred hhhcCCCCcccchhhH-HHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHh-ccccCChh
Q 041698 158 LSEMAPYRFRGALNIG-FQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGS-MILPDTPN 227 (355)
Q Consensus 158 ~~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~ 227 (355)
+.|.+|++.|++..+. ++....+|..++|.+++.+.+ ..+++..|.+.+++.++..+.. +..||+++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~---~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE---SIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH---HSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 9999999999999888 477888999999999998877 4678888888777766665543 44566543
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.37 E-value=3.7e-12 Score=116.55 Aligned_cols=141 Identities=13% Similarity=0.051 Sum_probs=113.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHH-----HHHHHHHHHHHHHHHhh---------HHHHHHHHHH
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMF-----FGGILFLAGALLNGFAQ---------AIWMLIVGRL 141 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~-----~~~~~~~~~~~~~~~~~---------~~~~l~~~r~ 141 (355)
+.+..+.++..+...++..++.++.|++.||+|||+... .+.++.+++.++..+.. +.+.+.+.-+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
T 4aps_A 315 DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWA 394 (491)
T ss_dssp CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHH
T ss_pred ccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Confidence 555567788888889999999999999999999986655 77777777776666643 6777888889
Q ss_pred HhhhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhhHHHHHHHHHHhc
Q 041698 142 LLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGAMVPALIITVGSM 220 (355)
Q Consensus 142 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 220 (355)
+.|++.+...+....++.|.+|+++|+++.++......+|..+++.+.+.+.+ .++...|.+.+...++..+..+
T Consensus 395 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 395 LVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA----KSEVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp HHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG----SSTTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988875 3566677766666655554443
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.36 E-value=7.2e-12 Score=112.77 Aligned_cols=140 Identities=9% Similarity=-0.034 Sum_probs=116.8
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccccccchh
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQAIWMLIVGRLLLGFGIGFANQSVP 155 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 155 (355)
|.+..+.++..+...++..++.++.|+++||+|||+.+.++.++.+++.++..+.++.+.++.. ++.|++.+...+...
T Consensus 291 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~ 369 (438)
T 3o7q_A 291 GMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIF 369 (438)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999888888887665554 888999999999999
Q ss_pred hhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccc-hHHHHhhhHHHHHHHHHHhcc
Q 041698 156 LYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWG-WRLSLGGAMVPALIITVGSMI 221 (355)
Q Consensus 156 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~~~~~ 221 (355)
.+..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+ ..+ ++..|++.++..++..+..+.
T Consensus 370 ~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 370 SLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD---AAGNIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp HHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH---HHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH---HhcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999866 788888776 566999999999999987 455 888887765554444333333
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.24 E-value=8.1e-11 Score=107.55 Aligned_cols=151 Identities=15% Similarity=0.039 Sum_probs=106.6
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGILFLAGALLNGFAQ-----AIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~g~~ 150 (355)
+.+............+...++.++.+++.||+|||+.++.+.....++.+..+... +...+...-+..+......
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (491)
T 4gc0_A 308 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW 387 (491)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHH
Confidence 55666777777788889999999999999999999999999888888776655431 2222222222222222233
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCC---CccchHHHHhhhHHHHHHHHHH-hccccCCh
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIH---GGWGWRLSLGGAMVPALIITVG-SMILPDTP 226 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~---~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~ 226 (355)
.+....+.+|.+|.+.|++++++......+|..+++.+...+.+.. ...++.+.|++.++++++..+. ++++||+.
T Consensus 388 ~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 388 GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 4566789999999999999999999999999988887766554310 0134555677777776665554 46789985
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.98 E-value=1.3e-10 Score=102.41 Aligned_cols=127 Identities=20% Similarity=0.208 Sum_probs=101.3
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHH-HHHHHH--HHHH--hhHHHHHHHHHHHhhhccccc
Q 041698 76 QYDSETLTMFTSSLYLAALLSSLVASRVTRQFGRKLSMFFGGIL-FLAGAL--LNGF--AQAIWMLIVGRLLLGFGIGFA 150 (355)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~~~~~~~g~l~dr~Grr~~l~~~~~~-~~~~~~--~~~~--~~~~~~l~~~r~l~G~~~g~~ 150 (355)
|.+..+.+++.+...++..++.++.+++.||+|++. ..+... ...+.. .... .++.+.+++..++.|++.+..
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 308 (375)
T 2gfp_A 231 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGML 308 (375)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHh
Confidence 788899999999999999999999999999999832 233322 222222 2222 247777888889999999999
Q ss_pred ccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHhhh
Q 041698 151 NQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGWRLSLGGA 208 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w~~~~~~~ 208 (355)
.+....++.|..| ++|+++.++.+....+|..++|.+.+.+.+ ..+|+..+...
T Consensus 309 ~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~---~~~~~~~~~~~ 362 (375)
T 2gfp_A 309 FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ---TGQGSLGLLMT 362 (375)
T ss_dssp SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH---HHHHHHHHHHH
T ss_pred hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc---CCcccHHHHHH
Confidence 9999999999998 889999999999999999999999988876 34676666553
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.83 E-value=6.1e-09 Score=95.95 Aligned_cols=140 Identities=18% Similarity=0.075 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhh----hhhch----hHHHHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHh
Q 041698 81 TLTMFTSSLYLAALLSSLVASRVT----RQFGR----KLSMFFGGILFLAGALLNGFA---------QAIWMLIVGRLLL 143 (355)
Q Consensus 81 ~~~~~~s~~~l~~~~~~~~~g~l~----dr~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~ 143 (355)
..+.+.+...++..++.++.+++. ||.|+ ++.+.++.++.+++.++.++. .+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 456666666677777777777764 55543 356677777777777766664 3677788889999
Q ss_pred hhcccccccchhhhhhhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHhhcCCCccch---------HHHHhhhHHHHHH
Q 041698 144 GFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVLNYFFNKIHGGWGW---------RLSLGGAMVPALI 214 (355)
Q Consensus 144 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~i~~~~~~~~~~~~w---------~~~~~~~~~~~~~ 214 (355)
|++.+...+....++.|..|+++|++++++......+|..++|.+.+.+.+..+ .+| +..|++.+.+.++
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV-TEQIVQTGMSVTAFQMFFFAGFAIL 494 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH-HHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccccccccccccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998876211 123 3336655655555
Q ss_pred HHHHhcc
Q 041698 215 ITVGSMI 221 (355)
Q Consensus 215 ~~~~~~~ 221 (355)
..+..++
T Consensus 495 ~~~~~~~ 501 (524)
T 2xut_A 495 AAIVFAL 501 (524)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 5444433
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=68.79 E-value=2.4 Score=19.39 Aligned_cols=14 Identities=29% Similarity=0.631 Sum_probs=11.4
Q ss_pred hhhhhhhhhchhHH
Q 041698 99 VASRVTRQFGRKLS 112 (355)
Q Consensus 99 ~~g~l~dr~Grr~~ 112 (355)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999865
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=34.50 E-value=99 Score=23.72 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchh
Q 041698 86 TSSLYLAALLSSLVASRVTRQFGRK 110 (355)
Q Consensus 86 ~s~~~l~~~~~~~~~g~l~dr~Grr 110 (355)
+.-|.+|..+++.+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4567788889999999999987543
No 17
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=21.49 E-value=76 Score=16.08 Aligned_cols=8 Identities=13% Similarity=0.638 Sum_probs=5.4
Q ss_pred ccccCChh
Q 041698 220 MILPDTPN 227 (355)
Q Consensus 220 ~~~~e~~~ 227 (355)
.+++|+|+
T Consensus 21 I~FRePPr 28 (32)
T 3arc_T 21 IFFREPPR 28 (32)
T ss_dssp HHTSCCCC
T ss_pred hhhcCCCC
Confidence 45678775
Done!