BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041699
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ER9|A Chain A, Crystal Structure Of Cytochrome B562 From Salmonella
Enterica Subsp. Enterica Serovar Typhimurium Str. 14028s
Length = 131
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 95 QMPAACNIDASVSSCPKLLNLAPDSPDAKIFKE 127
+M AA +DA ++ PKL + APDSP+ K F+
Sbjct: 57 KMRAAA-LDAQKATPPKLEDKAPDSPEMKDFRH 88
>pdb|3U8P|A Chain A, Cytochrome B562 Integral Fusion With Egfp
pdb|3U8P|B Chain B, Cytochrome B562 Integral Fusion With Egfp
pdb|3U8P|C Chain C, Cytochrome B562 Integral Fusion With Egfp
Length = 347
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 93 ALQMPAACNIDASVSSCPKLLNLAPDSPDAKIFKE 127
AL A +DA ++ PKL + +PDSP+ K F+
Sbjct: 72 ALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRH 106
>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Capric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK1|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Lauric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK2|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Myristic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK3|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Palmitoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK4|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Stearic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK5|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Oleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK6|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Alpha-Linolenic
Acid Revealed By High-Resolution X-Ray Crystallography
pdb|1FK7|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Ricinoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1AFH|A Chain A, Lipid Transfer Protein From Maize Seedlings, Nmr, 15
Structures
pdb|1MZL|A Chain A, Maize Nonspecific Lipid Transfer Protein
pdb|1MZM|A Chain A, Maize Nonspecific Lipid Transfer Protein Complexed With
Palmitate
Length = 93
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 31 ECAEQLTNLASCIPFVSGTAKKPTSECCQDTQKLK-----ASKPKCLCVLIKESTDPSMG 85
C + + +A CI + G P++ CC + L + + C +K + G
Sbjct: 3 SCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSG 62
Query: 86 LPINTTLALQMPAACNI 102
L N A +P+ C +
Sbjct: 63 L--NAGNAASIPSKCGV 77
>pdb|256B|A Chain A, Improvement Of The 2.5 Angstroms Resolution Model Of
Cytochrome B562 By Redetermining The Primary Structure
And Using Molecular Graphics
pdb|256B|B Chain B, Improvement Of The 2.5 Angstroms Resolution Model Of
Cytochrome B562 By Redetermining The Primary Structure
And Using Molecular Graphics
pdb|1APC|A Chain A, Solution Structure Of Apocytochrome B562
pdb|1QPU|A Chain A, Solution Structure Of Oxidized Escherichia Coli Cytochrome
B562
Length = 106
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 95 QMPAACNIDASVSSCPKLLNLAPDSPDAKIFKE 127
+M AA +DA ++ PKL + +PDSP+ K F+
Sbjct: 32 KMRAAA-LDAQKATPPKLEDKSPDSPEMKDFRH 63
>pdb|1YZA|A Chain A, The Solution Structure Of A Redesigned Apocytochrome B562
(Rd-Apocyt B562) With The N-Terminal Helix Unfolded
Length = 106
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 95 QMPAACNIDASVSSCPKLLNLAPDSPDAKIFKE 127
+M AA +DA ++ PKL + +PDSP+ K F+
Sbjct: 32 KMRAAA-LDAQKATPPKLEDKSPDSPEMKDFRH 63
>pdb|1YZC|A Chain A, The Solution Structure Of A Redesigned Apocytochrome B562
(Rd-Apocyt B562) With The N- And A Part Of The
C-Terminal Helices Unfolded
Length = 106
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 95 QMPAACNIDASVSSCPKLLNLAPDSPDAKIFK 126
+M AA +DA ++ PKL + +PDSP+ K F+
Sbjct: 32 KMRAAA-LDAQKATPPKLEDKSPDSPEMKDFR 62
>pdb|1YYJ|A Chain A, The Nmr Solution Structure Of A Redesigned Apocytochrome
B562:rd-Apocyt B562
pdb|1YYX|A Chain A, The Solution Structure Of A Redesigned Apocytochrome B562
(Rd-Apocyt B562) At 2.8m Urea
Length = 106
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 95 QMPAACNIDASVSSCPKLLNLAPDSPDAKIFKE 127
+M AA +DA ++ PKL + +PDSP+ K F+
Sbjct: 32 KMRAAA-LDAQKATPPKLEDKSPDSPEMKDFRH 63
>pdb|1M6T|A Chain A, Crystal Structure Of B562ril, A Redesigned Four Helix
Bundle
Length = 106
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 95 QMPAACNIDASVSSCPKLLNLAPDSPDAKIFKE 127
+M AA +DA ++ PKL + +PDSP+ K F+
Sbjct: 32 KMRAAA-LDAQKATPPKLEDKSPDSPEMKDFRH 63
>pdb|1QQ3|A Chain A, The Solution Structure Of The Heme Binding Variant
Arg98cys Of Oxidized Escherichia Coli Cytochrome B562
Length = 106
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 95 QMPAACNIDASVSSCPKLLNLAPDSPDAKIFKE 127
+M AA +DA ++ PKL + +PDSP+ K F+
Sbjct: 32 KMRAAA-LDAQKATPPKLEDKSPDSPEMKDFRH 63
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 93 ALQMPAACNIDASVSSCPKLLNLAPDSPDAKIFKE 127
AL A +DA ++ PKL + +PDSP+ K F+
Sbjct: 39 ALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRH 73
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 93 ALQMPAACNIDASVSSCPKLLNLAPDSPDAKIFKE 127
AL A +DA ++ PKL + +PDSP+ K F+
Sbjct: 262 ALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRH 296
>pdb|2AAZ|A Chain A, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|B Chain B, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|C Chain C, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|D Chain D, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|E Chain E, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|F Chain F, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|G Chain G, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|H Chain H, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|I Chain I, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|J Chain J, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|K Chain K, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|L Chain L, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|M Chain M, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|N Chain N, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|O Chain O, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|P Chain P, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
Length = 317
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 66 ASKPKCLCVLIKESTDPSMGLPIN 89
SKPK C++ + S D +G+P N
Sbjct: 204 GSKPKLSCLMYQRSCDLGLGVPFN 227
>pdb|2QE3|A Chain A, Crystal Structure Of Human Tl1a Extracellular Domain
Length = 184
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 49 TAKKPTSECCQDTQKLKASKPKCLCVLIKESTDPSMGLPINTTLALQMPAACNIDAS 105
T + TSEC + Q + +KP + V+I + TD P T L + + C + ++
Sbjct: 87 TFRGMTSECSEIRQAGRPNKPDSITVVITKVTD---SYPEPTQLLMGTKSVCEVGSN 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.129 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,455,836
Number of Sequences: 62578
Number of extensions: 92671
Number of successful extensions: 268
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 21
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)