Query 041699
Match_columns 203
No_of_seqs 128 out of 1054
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 09:45:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14368 LTP_2: Probable lipid 99.5 1.6E-15 3.5E-20 112.1 -0.3 81 26-109 16-96 (96)
2 cd01960 nsLTP1 nsLTP1: Non-spe 99.4 7.4E-14 1.6E-18 103.5 4.6 72 31-105 2-79 (89)
3 cd04660 nsLTP_like nsLTP_like: 99.4 6.5E-14 1.4E-18 100.8 3.6 71 32-109 1-73 (73)
4 cd00010 AAI_LTSS AAI_LTSS: Alp 99.4 9.7E-14 2.1E-18 96.1 4.3 63 39-102 1-63 (63)
5 cd01959 nsLTP2 nsLTP2: Non-spe 99.3 7.4E-13 1.6E-17 94.3 3.7 62 36-105 3-64 (66)
6 smart00499 AAI Plant lipid tra 99.0 5.2E-10 1.1E-14 78.3 5.0 76 32-109 1-79 (79)
7 PF00234 Tryp_alpha_amyl: Prot 98.6 9.3E-10 2E-14 80.8 -4.7 70 37-109 13-90 (90)
8 PF14547 Hydrophob_seed: Hydro 94.9 0.0064 1.4E-07 45.4 -0.2 76 32-110 2-85 (85)
9 cd01958 HPS_like HPS_like: Hyd 93.6 0.05 1.1E-06 40.7 2.2 75 32-109 4-85 (85)
10 cd00261 AAI_SS AAI_SS: Alpha-A 85.6 0.22 4.8E-06 37.7 -0.3 69 38-110 14-109 (110)
11 PF07172 GRP: Glycine rich pro 80.9 1.3 2.8E-05 33.6 2.3 19 1-19 1-19 (95)
12 PF05283 MGC-24: Multi-glycosy 52.9 59 0.0013 27.7 6.7 25 169-193 147-171 (186)
13 PF15284 PAGK: Phage-encoded v 40.1 20 0.00044 25.3 1.6 30 1-30 1-30 (61)
14 PF05617 Prolamin_like: Prolam 37.8 40 0.00087 23.2 2.9 26 48-76 23-48 (70)
15 PF06679 DUF1180: Protein of u 31.9 2.9E+02 0.0063 23.0 7.6 15 186-200 96-110 (163)
16 PF15240 Pro-rich: Proline-ric 23.3 52 0.0011 27.9 1.7 13 7-19 1-13 (179)
17 PF10731 Anophelin: Thrombin i 20.8 1.3E+02 0.0029 21.3 3.0 29 1-29 1-29 (65)
No 1
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.51 E-value=1.6e-15 Score=112.11 Aligned_cols=81 Identities=32% Similarity=0.705 Sum_probs=49.6
Q ss_pred cccccchHhhhccccCCHHHhcCCCCCCCHhHHHHHHHhhcCCCcccccccccCCCCCCCCCCCHHHHhhccccCCCCCC
Q 041699 26 EDDEQECAEQLTNLASCIPFVSGTAKKPTSECCQDTQKLKASKPKCLCVLIKESTDPSMGLPINTTLALQMPAACNIDAS 105 (203)
Q Consensus 26 a~~~~~C~~~l~~L~pCl~yv~g~~~~PS~~CC~alk~v~~~~~~CLC~~lk~~~~~~lg~~in~trA~~LP~~Cgv~~p 105 (203)
+....+|...+....+|..|+.+ ...|+..||++++++++.+..|||+++++.. ..+++||.+|++.||++||++.+
T Consensus 16 ~~~~~~c~~~l~~c~~~~~~~~~-~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~--~~~~~in~~~a~~Lp~~Cg~~~~ 92 (96)
T PF14368_consen 16 AACCCSCANSLLPCCPCLCYVTG-GPAPSAACCSALKSVVQADPPCLCQLLNSPG--APGFGINVTRALALPAACGVPVP 92 (96)
T ss_dssp --BTTB-HCCCCHH--HHHHHCC------HHHHHHHCC----HCCHHHCCCC-CC--HCHHCCTCHHHHHHHHHCTSS-S
T ss_pred CCCcchhHHHHhccccchhccCC-CCCCCHHHHHHHHHhccCCCCCHHHhcCccc--cccCCcCHHHHHHHHHHcCCCCC
Confidence 34556786544444444888884 4689999999999998889999999999842 14467999999999999999997
Q ss_pred CCCC
Q 041699 106 VSSC 109 (203)
Q Consensus 106 ~s~C 109 (203)
.++|
T Consensus 93 ~~~C 96 (96)
T PF14368_consen 93 PSKC 96 (96)
T ss_dssp ----
T ss_pred CCCC
Confidence 6666
No 2
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.45 E-value=7.4e-14 Score=103.49 Aligned_cols=72 Identities=22% Similarity=0.623 Sum_probs=59.2
Q ss_pred chHhhhccccCCHHHhcCCCCCCCHhHHHHHHHhhcC-----CCcccccccccCCCCCCCCC-CCHHHHhhccccCCCCC
Q 041699 31 ECAEQLTNLASCIPFVSGTAKKPTSECCQDTQKLKAS-----KPKCLCVLIKESTDPSMGLP-INTTLALQMPAACNIDA 104 (203)
Q Consensus 31 ~C~~~l~~L~pCl~yv~g~~~~PS~~CC~alk~v~~~-----~~~CLC~~lk~~~~~~lg~~-in~trA~~LP~~Cgv~~ 104 (203)
+|..+...|.||++|++|....|+.+||++++++++. +..|+|..+++.. .++. ||.+||+.||++||++.
T Consensus 2 ~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~---~~~~~i~~~~a~~LP~~C~v~~ 78 (89)
T cd01960 2 SCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAA---AGISGLNPGRAAGLPGKCGVSI 78 (89)
T ss_pred CHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccc---cccCCCCHHHHHhChHhcccCC
Confidence 5899999999999999987778999999999998753 3456666577642 3343 99999999999999997
Q ss_pred C
Q 041699 105 S 105 (203)
Q Consensus 105 p 105 (203)
+
T Consensus 79 ~ 79 (89)
T cd01960 79 P 79 (89)
T ss_pred C
Confidence 4
No 3
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.44 E-value=6.5e-14 Score=100.75 Aligned_cols=71 Identities=32% Similarity=0.705 Sum_probs=58.2
Q ss_pred hHhhhccccCCHHHhcCCC--CCCCHhHHHHHHHhhcCCCcccccccccCCCCCCCCCCCHHHHhhccccCCCCCCCCCC
Q 041699 32 CAEQLTNLASCIPFVSGTA--KKPTSECCQDTQKLKASKPKCLCVLIKESTDPSMGLPINTTLALQMPAACNIDASVSSC 109 (203)
Q Consensus 32 C~~~l~~L~pCl~yv~g~~--~~PS~~CC~alk~v~~~~~~CLC~~lk~~~~~~lg~~in~trA~~LP~~Cgv~~p~s~C 109 (203)
|...+..|.+|++||+++. ..|+..||+++|++ +..|+|.+++.. .+. .||.+||..||++||++.+.++|
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~---~~~C~C~~~~~~---~~~-~i~~~~a~~Lp~~Cgv~~p~~~C 73 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA---DLPCLCRYKTSL---VLQ-IIDPDKAVYLPAKCGLPLPPSSC 73 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC---CcCCEeeccCCC---ccc-ccCHHHHHHHHHHcCCCCCCCCC
Confidence 5566778999999999765 36899999999986 667999888753 333 49999999999999999865766
No 4
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.44 E-value=9.7e-14 Score=96.13 Aligned_cols=63 Identities=38% Similarity=0.839 Sum_probs=53.4
Q ss_pred ccCCHHHhcCCCCCCCHhHHHHHHHhhcCCCcccccccccCCCCCCCCCCCHHHHhhccccCCC
Q 041699 39 LASCIPFVSGTAKKPTSECCQDTQKLKASKPKCLCVLIKESTDPSMGLPINTTLALQMPAACNI 102 (203)
Q Consensus 39 L~pCl~yv~g~~~~PS~~CC~alk~v~~~~~~CLC~~lk~~~~~~lg~~in~trA~~LP~~Cgv 102 (203)
|.||++|++|+...|+..||++++++++.+..|+|+++++......+ .+|.+++..||++||+
T Consensus 1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~-~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLG-LKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCCCCCChHHHHHHHHHHhcChhhHHHHHcCccccccC-cccHHHHHhchHhcCC
Confidence 57999999987778999999999999988999999999986432222 2279999999999996
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.34 E-value=7.4e-13 Score=94.26 Aligned_cols=62 Identities=31% Similarity=0.687 Sum_probs=53.9
Q ss_pred hccccCCHHHhcCCCCCCCHhHHHHHHHhhcCCCcccccccccCCCCCCCCCCCHHHHhhccccCCCCCC
Q 041699 36 LTNLASCIPFVSGTAKKPTSECCQDTQKLKASKPKCLCVLIKESTDPSMGLPINTTLALQMPAACNIDAS 105 (203)
Q Consensus 36 l~~L~pCl~yv~g~~~~PS~~CC~alk~v~~~~~~CLC~~lk~~~~~~lg~~in~trA~~LP~~Cgv~~p 105 (203)
..+|.+|++|++++ ..|+.+||+.||+ +..|||+|+++ +.++..||.++|++|+++||+++|
T Consensus 3 ~~~L~~C~~ai~~~-~~Ps~~CC~~Lk~----~~~CLC~y~~~---p~l~~~i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 3 PTQLSPCLPAILGG-SPPSAACCAKLKE----QQSCLCQYAKN---PSLKQYVNSPNARKVLAACGVPYP 64 (66)
T ss_pred hhhcccCHHHHhCC-CCCCHHHHHHHhc----CCCCeeeeecC---ccHHhhcCcHHHHHHHHHcCCCCC
Confidence 36899999999964 5799999999998 45999999987 456667999999999999999986
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=99.01 E-value=5.2e-10 Score=78.29 Aligned_cols=76 Identities=24% Similarity=0.690 Sum_probs=58.7
Q ss_pred hHhhhccccCCHHHhcCC--CCCCCHhHHHHHHHhhcCCCcccccccccCCCCCCC-CCCCHHHHhhccccCCCCCCCCC
Q 041699 32 CAEQLTNLASCIPFVSGT--AKKPTSECCQDTQKLKASKPKCLCVLIKESTDPSMG-LPINTTLALQMPAACNIDASVSS 108 (203)
Q Consensus 32 C~~~l~~L~pCl~yv~g~--~~~PS~~CC~alk~v~~~~~~CLC~~lk~~~~~~lg-~~in~trA~~LP~~Cgv~~p~s~ 108 (203)
|...+..+.+|++|+++. ...|+.+||++++.+. +..|+|.+++........ ..++..++..||+.||+..+...
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~--~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~~~~~~~~ 78 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN--SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACGVPPPYTD 78 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc--ccCCcchhhhcccccccchhhhhHHHHHhhHHhcCCCCCCCC
Confidence 556667778999999976 4678999999999986 789999888874321110 02599999999999999886544
Q ss_pred C
Q 041699 109 C 109 (203)
Q Consensus 109 C 109 (203)
|
T Consensus 79 C 79 (79)
T smart00499 79 C 79 (79)
T ss_pred C
Confidence 4
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.61 E-value=9.3e-10 Score=80.79 Aligned_cols=70 Identities=27% Similarity=0.786 Sum_probs=55.9
Q ss_pred ccccCCHHHhcCCCCCCCHhHHHHHHHhhcCCCcccccccccCCCCC-----C---CCCCCHHHHhhccccCCCCCCCCC
Q 041699 37 TNLASCIPFVSGTAKKPTSECCQDTQKLKASKPKCLCVLIKESTDPS-----M---GLPINTTLALQMPAACNIDASVSS 108 (203)
Q Consensus 37 ~~L~pCl~yv~g~~~~PS~~CC~alk~v~~~~~~CLC~~lk~~~~~~-----l---g~~in~trA~~LP~~Cgv~~p~s~ 108 (203)
..+.+|..|+++....|+..||++|+++ +..|.|..|+...... . ...++..+|..||+.||+..+.++
T Consensus 13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l---~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~~~~ 89 (90)
T PF00234_consen 13 VRLSPCLPYLQGGCQQPSQQCCQQLRQL---DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPPYTD 89 (90)
T ss_dssp SHHHGGHHHHTTSSSHHHHHHHHHHHHH---HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSSSS-
T ss_pred ccccccHHHHhcccccchHHHhHHHHHH---hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence 4588999999987668999999999999 9999998888642110 0 025889999999999999997655
Q ss_pred C
Q 041699 109 C 109 (203)
Q Consensus 109 C 109 (203)
|
T Consensus 90 C 90 (90)
T PF00234_consen 90 C 90 (90)
T ss_dssp G
T ss_pred C
Confidence 5
No 8
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=94.93 E-value=0.0064 Score=45.44 Aligned_cols=76 Identities=26% Similarity=0.584 Sum_probs=52.7
Q ss_pred hHhhhccccCCHHHhc----CCCCCCCHhHHHHHHHhhcCC-CcccccccccCCCCCCC-CCCCHHHHh-hccccCCCCC
Q 041699 32 CAEQLTNLASCIPFVS----GTAKKPTSECCQDTQKLKASK-PKCLCVLIKESTDPSMG-LPINTTLAL-QMPAACNIDA 104 (203)
Q Consensus 32 C~~~l~~L~pCl~yv~----g~~~~PS~~CC~alk~v~~~~-~~CLC~~lk~~~~~~lg-~~in~trA~-~LP~~Cgv~~ 104 (203)
|.-...+|.-|...+. ..+..+..+||.-++.+.+.+ ..|||..+|.. .+| +.+|....+ .|-..||-..
T Consensus 2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~---vlg~i~~~ipv~l~~lln~CGk~~ 78 (85)
T PF14547_consen 2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKAN---VLGLINVNIPVALNLLLNACGKTV 78 (85)
T ss_pred CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhh---cccccccccccHHHHHHHHhCCcC
Confidence 4444456778888772 113347788999999987754 79999988864 466 555555555 4668899887
Q ss_pred C-CCCCC
Q 041699 105 S-VSSCP 110 (203)
Q Consensus 105 p-~s~C~ 110 (203)
| .++|.
T Consensus 79 p~gf~C~ 85 (85)
T PF14547_consen 79 PSGFTCP 85 (85)
T ss_pred cCCCcCC
Confidence 4 67774
No 9
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=93.63 E-value=0.05 Score=40.73 Aligned_cols=75 Identities=24% Similarity=0.523 Sum_probs=51.8
Q ss_pred hHhhhccccCCHHHhcC----CCCCCCHhHHHHHHHhhcC-CCcccccccccCCCCCCCCCCCHHHHhh-ccccCCCCCC
Q 041699 32 CAEQLTNLASCIPFVSG----TAKKPTSECCQDTQKLKAS-KPKCLCVLIKESTDPSMGLPINTTLALQ-MPAACNIDAS 105 (203)
Q Consensus 32 C~~~l~~L~pCl~yv~g----~~~~PS~~CC~alk~v~~~-~~~CLC~~lk~~~~~~lg~~in~trA~~-LP~~Cgv~~p 105 (203)
|.-.-.+|..|..-+.. .+..|..+||.-++.+.+- -..|+|..+|.. .+|+.+|....+. +-..||-..|
T Consensus 4 CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan---~lgi~~~~pv~l~llln~CGk~~P 80 (85)
T cd01958 4 CPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKAN---ILGISINIPVALSLLLNSCGRNVP 80 (85)
T ss_pred CCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeecc---ccCcccccChhHHHHHHHHcCcCC
Confidence 55444566777776632 1345778999999998775 489999999863 5777666666665 4467998875
Q ss_pred -CCCC
Q 041699 106 -VSSC 109 (203)
Q Consensus 106 -~s~C 109 (203)
.+.|
T Consensus 81 ~gf~C 85 (85)
T cd01958 81 PGFTC 85 (85)
T ss_pred CCCcC
Confidence 4555
No 10
>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.
Probab=85.60 E-value=0.22 Score=37.67 Aligned_cols=69 Identities=22% Similarity=0.561 Sum_probs=44.8
Q ss_pred cccCCHHHhcCCC---C-----------CCCHhHHHHHHHhhcCCCcccccccccCCCCCC-----------C--CCCCH
Q 041699 38 NLASCIPFVSGTA---K-----------KPTSECCQDTQKLKASKPKCLCVLIKESTDPSM-----------G--LPINT 90 (203)
Q Consensus 38 ~L~pCl~yv~g~~---~-----------~PS~~CC~alk~v~~~~~~CLC~~lk~~~~~~l-----------g--~~in~ 90 (203)
.|.+|..||.... . ..-..||+.++.+ ...|.|..|........ + ...-.
T Consensus 14 ~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i---~~qcrC~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (110)
T cd00261 14 PLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQI---PEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERMR 90 (110)
T ss_pred cCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhC---cHhhhHHHHHHHHHHHHHhhhccccccCcChHHHHH
Confidence 5789999986221 1 1236799999999 88999988863221100 0 01334
Q ss_pred HHHhhccccCCCCCCCCCCC
Q 041699 91 TLALQMPAACNIDASVSSCP 110 (203)
Q Consensus 91 trA~~LP~~Cgv~~p~s~C~ 110 (203)
..|..||..||+.. ...|.
T Consensus 91 ~~a~~Lp~~C~~~~-~~~C~ 109 (110)
T cd00261 91 QAAQNLPSMCNLYP-PPYCP 109 (110)
T ss_pred HHHHhhchhcCCCC-CCCCC
Confidence 57889999999986 33464
No 11
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=80.94 E-value=1.3 Score=33.64 Aligned_cols=19 Identities=16% Similarity=0.308 Sum_probs=8.7
Q ss_pred CCCchHHHHHHHHHHHHHH
Q 041699 1 MGRDKMMIIFCIVMASLAM 19 (203)
Q Consensus 1 Ma~~~~~~~v~lvv~llv~ 19 (203)
|++++.+++.++++++|++
T Consensus 1 MaSK~~llL~l~LA~lLli 19 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLI 19 (95)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 8854444443333333333
No 12
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=52.93 E-value=59 Score=27.66 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=16.6
Q ss_pred CCCccccCCCCCceeeehhHHHHHH
Q 041699 169 NDKATTSSSNGAKTVSFGTASLLMM 193 (203)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (203)
.++..+....+-|--||.+|.||.+
T Consensus 147 tp~~~~~~~s~FD~~SFiGGIVL~L 171 (186)
T PF05283_consen 147 TPTSPPPKKSTFDAASFIGGIVLTL 171 (186)
T ss_pred CCCCCCCCCCCCchhhhhhHHHHHH
Confidence 3333445567788889988877654
No 13
>PF15284 PAGK: Phage-encoded virulence factor
Probab=40.10 E-value=20 Score=25.28 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=18.6
Q ss_pred CCCchHHHHHHHHHHHHHHHhccccccccc
Q 041699 1 MGRDKMMIIFCIVMASLAMASMATIEDDEQ 30 (203)
Q Consensus 1 Ma~~~~~~~v~lvv~llv~~a~s~~a~~~~ 30 (203)
|.+.|++++++++++.....++++.|.+..
T Consensus 1 Mkk~ksifL~l~~~LsA~~FSasamAa~~~ 30 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAAGFSASAMAADSS 30 (61)
T ss_pred ChHHHHHHHHHHHHHHHhhhhHHHHHHhhC
Confidence 666777777777666555555555554433
No 14
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=37.75 E-value=40 Score=23.16 Aligned_cols=26 Identities=31% Similarity=0.663 Sum_probs=20.2
Q ss_pred CCCCCCCHhHHHHHHHhhcCCCccccccc
Q 041699 48 GTAKKPTSECCQDTQKLKASKPKCLCVLI 76 (203)
Q Consensus 48 g~~~~PS~~CC~alk~v~~~~~~CLC~~l 76 (203)
|+....+.+||..+.++ ...|.=.++
T Consensus 23 g~~~~i~~~CC~~i~~~---g~~C~~~l~ 48 (70)
T PF05617_consen 23 GNKKNIGPECCKAINKM---GKDCHPALF 48 (70)
T ss_pred CCCCCCChHHHHHHHHH---hHhHHHHHH
Confidence 55457999999999998 777877633
No 15
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=31.86 E-value=2.9e+02 Score=22.96 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHHHHH
Q 041699 186 GTASLLMMIASYALV 200 (203)
Q Consensus 186 ~~~~~~~~~~~~~~~ 200 (203)
-..+|+..+.+++++
T Consensus 96 R~~~Vl~g~s~l~i~ 110 (163)
T PF06679_consen 96 RALYVLVGLSALAIL 110 (163)
T ss_pred hhHHHHHHHHHHHHH
Confidence 334444444444333
No 16
>PF15240 Pro-rich: Proline-rich
Probab=23.28 E-value=52 Score=27.92 Aligned_cols=13 Identities=31% Similarity=0.549 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 041699 7 MIIFCIVMASLAM 19 (203)
Q Consensus 7 ~~~v~lvv~llv~ 19 (203)
||||+|.|+||++
T Consensus 1 MLlVLLSvALLAL 13 (179)
T PF15240_consen 1 MLLVLLSVALLAL 13 (179)
T ss_pred ChhHHHHHHHHHh
Confidence 3555555555554
No 17
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=20.80 E-value=1.3e+02 Score=21.28 Aligned_cols=29 Identities=17% Similarity=0.159 Sum_probs=12.6
Q ss_pred CCCchHHHHHHHHHHHHHHHhcccccccc
Q 041699 1 MGRDKMMIIFCIVMASLAMASMATIEDDE 29 (203)
Q Consensus 1 Ma~~~~~~~v~lvv~llv~~a~s~~a~~~ 29 (203)
|+.+-+++.++-++++.++.++.+.+++.
T Consensus 1 MA~Kl~vialLC~aLva~vQ~APQYa~Ge 29 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQSAPQYAPGE 29 (65)
T ss_pred CcchhhHHHHHHHHHHHHHhcCcccCCCC
Confidence 55444433333333333455554444443
Done!