BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041700
(75 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 48/73 (65%)
Query: 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNL 61
F G IP LSNC+ L LHLS+N SG +P +G+LSKL++L L N L+GEIP+E +
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 62 TELERMSLSENEL 74
LE + L N+L
Sbjct: 466 KTLETLILDFNDL 478
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%)
Query: 1 MFHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGN 60
M G IP + + YL IL+L +ND SG++P ++G+L L L L N+L G IP+
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702
Query: 61 LTELERMSLSENELQ 75
LT L + LS N L
Sbjct: 703 LTMLTEIDLSNNNLS 717
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 37/69 (53%)
Query: 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTE 63
G IPS LSNCT L + LS N +G +PK IG L L L L N G IP E G+
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539
Query: 64 LERMSLSEN 72
L + L+ N
Sbjct: 540 LIWLDLNTN 548
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 37/75 (49%)
Query: 1 MFHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGN 60
M G IP L L+ L L +ND +G +P + N + L + L NRL GEIP+ G
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
Query: 61 LTELERMSLSENELQ 75
L L + LS N
Sbjct: 513 LENLAILKLSNNSFS 527
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%)
Query: 1 MFHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGN 60
++ G N + L +SYN SG +PK+IG++ L L LG N + G IP E G+
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 678
Query: 61 LTELERMSLSENELQ 75
L L + LS N+L
Sbjct: 679 LRGLNILDLSSNKLD 693
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 16 LQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75
LQ L+L N F+G +P + N S+L L+L N L G IP G+L++L + L N L+
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSL 69
+S C L+ L +S N+FS +P +G+ S L+ L + N+L G+ R TEL+ +++
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254
Query: 70 SENEL 74
S N+
Sbjct: 255 SSNQF 259
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 27/87 (31%)
Query: 16 LQILHLSYNDFSGAVPKDIGNLSK---------------------------LKELYLGRN 48
L++L LS+N+FSG +P+ + NLS L+ELYL N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 49 RLQGEIPREFGNLTELERMSLSENELQ 75
G+IP N +EL + LS N L
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLS 431
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIP 55
G A+S CT L++L++S N F G +P L L+ L L N+ GEIP
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIP 286
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 2 FHGGIPSALSN-CTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPRE-FG 59
F G IP LS C L L LS N F GAVP G+ S L+ L L N GE+P +
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 60 NLTELERMSLSENELQ 75
+ L+ + LS NE
Sbjct: 341 KMRGLKVLDLSFNEFS 356
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVP 31
F G IP+ L +C L L L+ N F+G +P
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVPK 32
G IP A+S T L + LS N+ SG +P+
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 48/73 (65%)
Query: 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNL 61
F G IP LSNC+ L LHLS+N SG +P +G+LSKL++L L N L+GEIP+E +
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Query: 62 TELERMSLSENEL 74
LE + L N+L
Sbjct: 463 KTLETLILDFNDL 475
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%)
Query: 1 MFHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGN 60
M G IP + + YL IL+L +ND SG++P ++G+L L L L N+L G IP+
Sbjct: 640 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 699
Query: 61 LTELERMSLSENELQ 75
LT L + LS N L
Sbjct: 700 LTMLTEIDLSNNNLS 714
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 37/69 (53%)
Query: 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTE 63
G IPS LSNCT L + LS N +G +PK IG L L L L N G IP E G+
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 536
Query: 64 LERMSLSEN 72
L + L+ N
Sbjct: 537 LIWLDLNTN 545
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 37/75 (49%)
Query: 1 MFHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGN 60
M G IP L L+ L L +ND +G +P + N + L + L NRL GEIP+ G
Sbjct: 450 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
Query: 61 LTELERMSLSENELQ 75
L L + LS N
Sbjct: 510 LENLAILKLSNNSFS 524
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%)
Query: 1 MFHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGN 60
++ G N + L +SYN SG +PK+IG++ L L LG N + G IP E G+
Sbjct: 616 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 675
Query: 61 LTELERMSLSENELQ 75
L L + LS N+L
Sbjct: 676 LRGLNILDLSSNKLD 690
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 16 LQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75
LQ L+L N F+G +P + N S+L L+L N L G IP G+L++L + L N L+
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSL 69
+S C L+ L +S N+FS +P +G+ S L+ L + N+L G+ R TEL+ +++
Sbjct: 193 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 251
Query: 70 SENEL 74
S N+
Sbjct: 252 SSNQF 256
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 27/87 (31%)
Query: 16 LQILHLSYNDFSGAVPKDIGNLSK---------------------------LKELYLGRN 48
L++L LS+N+FSG +P+ + NLS L+ELYL N
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 49 RLQGEIPREFGNLTELERMSLSENELQ 75
G+IP N +EL + LS N L
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLS 428
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIP 55
G A+S CT L++L++S N F G +P L L+ L L N+ GEIP
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIP 283
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 2 FHGGIPSALSN-CTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPRE-FG 59
F G IP LS C L L LS N F GAVP G+ S L+ L L N GE+P +
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 337
Query: 60 NLTELERMSLSENELQ 75
+ L+ + LS NE
Sbjct: 338 KMRGLKVLDLSFNEFS 353
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVP 31
F G IP+ L +C L L L+ N F+G +P
Sbjct: 523 FSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 4 GGIPSALSNCTYLQILHLSYNDFSGAVPK 32
G IP A+S T L + LS N+ SG +P+
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTE 63
G IP LS L L SYN SG +P I +L L + NR+ G IP +G+ ++
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 64 L-ERMSLSENEL 74
L M++S N L
Sbjct: 175 LFTSMTISRNRL 186
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKL-KELYLGRNRLQGEIPREFGNLT 62
G +P ++S+ L + N SGA+P G+ SKL + + RNRL G+IP F NL
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL- 197
Query: 63 ELERMSLSENELQ 75
L + LS N L+
Sbjct: 198 NLAFVDLSRNMLE 210
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 6 IPSALSNCTYLQILHL-SYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTEL 64
IPS+L+N YL L++ N+ G +P I L++L LY+ + G IP + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 65 ERMSLSENELQ 75
+ S N L
Sbjct: 128 VTLDFSYNALS 138
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 4 GGIPSALSNCTYL-QILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLT 62
G IP + + + L + +S N +G +P NL+ L + L RN L+G+ FG+
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK 221
Query: 63 ELERMSLSENEL 74
+++ L++N L
Sbjct: 222 NTQKIHLAKNSL 233
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNR 49
+G +P L+ +L L++S+N+ G +P+ GNL + N+
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 3 HGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPRE-FGNL 61
H +P+ + T QIL+L N + P +L LKELYLG N+L G +P F +L
Sbjct: 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSL 87
Query: 62 TELERMSLSENEL 74
T+L + L N+L
Sbjct: 88 TQLTVLDLGTNQL 100
Score = 35.4 bits (80), Expect = 0.007, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 4 GGIP-SALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLT 62
G +P + T L +L L N + L LKEL++ N+L E+PR LT
Sbjct: 77 GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT 135
Query: 63 ELERMSLSENELQ 75
L ++L +N+L+
Sbjct: 136 HLTHLALDQNQLK 148
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 6 IPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELE 65
+P LSN +L ++ LS N S + N+++L L L NRL+ PR F L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 66 RMSLSENELQ 75
+SL N++
Sbjct: 106 LLSLHGNDIS 115
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTEL 64
GIP ++ L+L N F+ VPK++ N L + L NR+ + F N+T+L
Sbjct: 28 GIPRDVTE------LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80
Query: 65 ERMSLSENELQ 75
+ LS N L+
Sbjct: 81 LTLILSYNRLR 91
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 34 IGNLSKLKELYLGRNRLQG-EIPREFGNLTELERMSLSENELQ 75
IG+L LKEL + N +Q ++P F NLT LE + LS N++Q
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 34 IGNLSKLKELYLGRNRLQG-EIPREFGNLTELERMSLSENELQ 75
IG+L LKEL + N +Q ++P F NLT LE + LS N++Q
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 34 IGNLSKLKELYLGRNRLQG-EIPREFGNLTELERMSLSENELQ 75
IG+L LKEL + N +Q ++P F NLT LE + LS N++Q
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 34 IGNLSKLKELYLGRNRLQG-EIPREFGNLTELERMSLSENELQ 75
IG+L LKEL + N +Q ++P F NLT LE + LS N++Q
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 34 IGNLSKLKELYLGRNRLQG-EIPREFGNLTELERMSLSENELQ 75
IG+L LKEL + N +Q ++P F NLT LE + LS N++Q
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 34 IGNLSKLKELYLGRNRLQG-EIPREFGNLTELERMSLSENELQ 75
IG+L LKEL + N +Q ++P F NLT LE + LS N++Q
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 34 IGNLSKLKELYLGRNRLQG-EIPREFGNLTELERMSLSENELQ 75
IG+L LKEL + N +Q ++P F NLT LE + LS N++Q
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 34 IGNLSKLKELYLGRNRLQG-EIPREFGNLTELERMSLSENELQ 75
IG+L LKEL + N +Q ++P F NLT LE + LS N++Q
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 31/62 (50%)
Query: 14 TYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73
T L L+L N L+KLKEL L N+LQ F LT L+ +SLS N+
Sbjct: 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166
Query: 74 LQ 75
LQ
Sbjct: 167 LQ 168
Score = 33.1 bits (74), Expect = 0.047, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSL 69
+ T L L L+ N + +L++L +LYLG N+L+ F LT+L+ + L
Sbjct: 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138
Query: 70 SENELQ 75
+ N+LQ
Sbjct: 139 NTNQLQ 144
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 14 TYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73
T L L+L YN +L++L L L N+L F +LT+L+++ L N+
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 74 LQ 75
L+
Sbjct: 119 LK 120
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 37 LSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74
L+KL L L N+LQ F +LTEL + L+ N+L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 31/62 (50%)
Query: 14 TYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73
T L L+L N L+KLKEL L N+LQ F LT L+ +SLS N+
Sbjct: 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166
Query: 74 LQ 75
LQ
Sbjct: 167 LQ 168
Score = 33.1 bits (74), Expect = 0.047, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSL 69
+ T L L L+ N + +L++L +LYLG N+L+ F LT+L+ + L
Sbjct: 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138
Query: 70 SENELQ 75
+ N+LQ
Sbjct: 139 NTNQLQ 144
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 14 TYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73
T L L+L YN +L++L L L N+L F +LT+L+++ L N+
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 74 LQ 75
L+
Sbjct: 119 LK 120
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 37 LSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74
L+KL L L N+LQ F +LTEL + L+ N+L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 7 PSALSNCTYLQILHLSYNDFSGAVPKDI-GNLSKLKELYLGRNRLQGEIPREFGNLTELE 65
P + T L L L YN+ ++PK + L+ LKEL L N+L+ F LTEL+
Sbjct: 126 PRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK 184
Query: 66 RMSLSENELQ 75
+ L N+L+
Sbjct: 185 TLKLDNNQLK 194
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 37 LSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75
L L EL L RN+L+ PR F +LT+L +SL NELQ
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
Score = 33.1 bits (74), Expect = 0.047, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTEL 64
IPS + T + L L N S K L+KL+ LYL N+LQ F L L
Sbjct: 30 AIPSNIPADT--KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87
Query: 65 ERMSLSENELQ 75
E + +++N+LQ
Sbjct: 88 ETLWVTDNKLQ 98
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTEL 64
G+ L+N TYL + H V + NL++L L N+LQ F LT+L
Sbjct: 127 GVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLD---LDNNQLQSLPEGVFDKLTQL 183
Query: 65 ERMSLSENELQ 75
+++SL++N+L+
Sbjct: 184 KQLSLNDNQLK 194
Score = 32.0 bits (71), Expect = 0.089, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 30/68 (44%)
Query: 8 SALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERM 67
SAL T L L L+ N L+ LKEL L N+LQ F LT L +
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 68 SLSENELQ 75
L N+LQ
Sbjct: 139 YLYHNQLQ 146
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.7 bits (78), Expect = 0.015, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDI-GNLSKLKELYLGRNRLQGEIPREFGNLTE 63
G+ L+N TYL + H ++PK + L+ L EL L N+LQ F LT+
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQ----SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182
Query: 64 LERMSLSENELQ 75
L+ + L +N+L+
Sbjct: 183 LKDLRLYQNQLK 194
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 32/68 (47%)
Query: 8 SALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERM 67
SAL T L L L+ N L+ LKEL L N+LQ F LT L +
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 68 SLSENELQ 75
+L+ N+LQ
Sbjct: 139 NLAHNQLQ 146
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 14 TYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSEN 72
T L L LSYN L++LK+L L +N+L+ F LT L+ + L +N
Sbjct: 157 TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced
By Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 6 IPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELE 65
+P LS T IL++S N S DI +LSKL+ L + NR+Q F ELE
Sbjct: 15 VPKDLSQKT--TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72
Query: 66 RMSLSENEL 74
+ LS N+L
Sbjct: 73 YLDLSHNKL 81
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 16 LQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSEN 72
+++L L N ++PK + L L+EL + N+L+ F LT L+++ L N
Sbjct: 423 IKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 1 MFHGGIPSALSNCTYLQILHLSY--NDFSGAVPKDIGNLSKLKELYLGRNRLQ--GEIPR 56
M H PS +S LHL + N + V ++ G+L++L+ L L N+L+ +I
Sbjct: 314 MVHMLCPSKIS-----PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE 368
Query: 57 EFGNLTELERMSLSENEL 74
+ L+++ +S+N +
Sbjct: 369 MTTQMKSLQQLDISQNSV 386
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTEL 64
GIP+ TYL + S V L+ L +LYLG N+LQ F LT L
Sbjct: 25 GIPAQT---TYLDLETNSLKSLPNGV---FDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78
Query: 65 ERMSLSENELQ 75
++LS N+LQ
Sbjct: 79 TYLNLSTNQLQ 89
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 14 TYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73
T L L+LS N L++LKEL L N+LQ F LT+L+ + L +N+
Sbjct: 76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ 135
Query: 74 LQ 75
L+
Sbjct: 136 LK 137
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 14 TYLQILHLSYNDFSGAVPKDIGN-LSKLKELYLGRNRLQGEIPREFGNLTELERMSLSEN 72
T L L+L N ++P + N L+ L L L N+LQ F LT+L+ ++L+ N
Sbjct: 52 TSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 73 ELQ 75
+LQ
Sbjct: 111 QLQ 113
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTE 63
GIP T Q+LHL N + P +L++L L L N+L F LT+
Sbjct: 36 AGIP------TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89
Query: 64 LERMSLSENELQ 75
L ++L N+L+
Sbjct: 90 LTHLALHINQLK 101
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 6 IPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELE 65
+P L T L L L N + D NL L L L N++ P F L +LE
Sbjct: 46 VPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103
Query: 66 RMSLSENELQ 75
R+ LS+N+L+
Sbjct: 104 RLYLSKNQLK 113
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSL 69
N L L L N S P L KL+ LYL +N+L+ E+P + L+ + +
Sbjct: 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128
Query: 70 SENEL 74
ENE+
Sbjct: 129 HENEI 133
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 6 IPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELE 65
+P L T L L L N + D NL L L L N++ P F L +LE
Sbjct: 46 VPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103
Query: 66 RMSLSENELQ 75
R+ LS+N+L+
Sbjct: 104 RLYLSKNQLK 113
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSL 69
N L L L N S P L KL+ LYL +N+L+ E+P + L+ + +
Sbjct: 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128
Query: 70 SENEL 74
ENE+
Sbjct: 129 HENEI 133
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 2 FHGGIPSAL-SNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGN 60
F G I S + N L++L LSYN + L LKEL L N+L+ F
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393
Query: 61 LTELERMSLSEN 72
LT L+++ L N
Sbjct: 394 LTSLQKIWLHTN 405
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTEL 64
GIP T Q+L+L N + P L++L L L N+L F LT+L
Sbjct: 27 GIP------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 80
Query: 65 ERMSLSENELQ 75
++SL++N+L+
Sbjct: 81 TQLSLNDNQLK 91
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.3 bits (72), Expect = 0.066, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 8 SALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERM 67
+A+ + T L+ L++ N S + NLS+L L+L N+L E G LT L +
Sbjct: 259 NAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTL 316
Query: 68 SLSENEL 74
LS+N +
Sbjct: 317 FLSQNHI 323
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 14 TYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73
T L+ L+L+ N + P + NL KL LY+G N++ NLT L + L+E+
Sbjct: 66 TNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDN 121
Query: 74 L 74
+
Sbjct: 122 I 122
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 8 SALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERM 67
S LSN L L++ N + + NL+ L+ELYL + + P NLT+ +
Sbjct: 82 SPLSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKXYSL 137
Query: 68 SLSEN 72
+L N
Sbjct: 138 NLGAN 142
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTEL 64
GIP T Q+L+L N + P L++L L L N+L F LT+L
Sbjct: 35 GIP------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 88
Query: 65 ERMSLSENELQ 75
++SL++N+L+
Sbjct: 89 TQLSLNDNQLK 99
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 23 YNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSEN 72
+N+ ++PKD+ +L L+EL + N+L+ F LT L+ + L +N
Sbjct: 458 HNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Mutant In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor
Mutant In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor
Mutant In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor
Mutant In Complex With A Protein Antigen
Length = 170
Score = 32.3 bits (72), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTEL 64
GIP T Q+L+L N + P L++L L L N+L F LT+L
Sbjct: 27 GIP------TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 80
Query: 65 ERMSLSENELQ 75
++SL++N+L+
Sbjct: 81 TQLSLNDNQLK 91
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%)
Query: 14 TYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73
T L L LS N L+KL LYL N+LQ F LT+L+ ++L N+
Sbjct: 52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ 111
Query: 74 LQ 75
L+
Sbjct: 112 LK 113
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 14 TYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSEN 72
T L IL+L N L++LKEL L N+L+ F LT L+++ L N
Sbjct: 76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 29 AVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75
+VP I S L L N+LQ F LT+L ++SLS+N++Q
Sbjct: 21 SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ 65
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte
Receptor 2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte
Receptor 2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte
Receptor 2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte
Receptor 2913 Ectodomain
Length = 174
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTE 63
GIP T Q L L+ N + P +L L++LY N+L F LT+
Sbjct: 29 AGIP------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82
Query: 64 LERMSLSENELQ 75
L ++ L++N L+
Sbjct: 83 LTQLDLNDNHLK 94
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 16 LQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74
L +L +S+N + + L +L+ELYL N L+ P +LE++SL+ N+L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 16 LQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74
L +L +S+N + + L +L+ELYL N L+ P +LE++SL+ N+L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 16 LQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74
L +L +S+N + + L +L+ELYL N L+ P +LE++SL+ N+L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 16 LQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74
L +L +S+N + + L +L+ELYL N L+ P +LE++SL+ N+L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDL 160
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 16 LQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74
L +L +S+N + + L +L+ELYL N L+ P +LE++SL+ N+L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 15 YLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSEN 72
+L L+L+ N + +P +I NLS L+ L L NRL +P E G+ +L+ +N
Sbjct: 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN 303
Score = 29.6 bits (65), Expect = 0.51, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSL 69
LSN LQI ++S N F L LYL N L E+P E NL+ L + L
Sbjct: 231 LSN---LQIFNISANIF---------KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDL 277
Query: 70 SENEL 74
S N L
Sbjct: 278 SHNRL 282
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.8 bits (68), Expect = 0.23, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 7 PSALSNCTYLQILHLSYNDFSGAVPKD-IGNLSKLKELYLGRNRLQGEIPREFGNLTELE 65
P LQ L+L N A+P D +L L L+L NR+ R F L L+
Sbjct: 121 PGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 179
Query: 66 RMSLSENEL 74
R+ L +N +
Sbjct: 180 RLLLHQNRV 188
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 7 PSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQG---EIPREFGNLTE 63
P+ L LHL P L+ L+ LYL N LQ + R+ GNLT
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 64 L 64
L
Sbjct: 157 L 157
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.8 bits (68), Expect = 0.23, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 7 PSALSNCTYLQILHLSYNDFSGAVPKD-IGNLSKLKELYLGRNRLQGEIPREFGNLTELE 65
P LQ L+L N A+P D +L L L+L NR+ R F L L+
Sbjct: 122 PGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180
Query: 66 RMSLSENEL 74
R+ L +N +
Sbjct: 181 RLLLHQNRV 189
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 7 PSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQG---EIPREFGNLTE 63
P+ L LHL P L+ L+ LYL N LQ + R+ GNLT
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 64 L 64
L
Sbjct: 158 L 158
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 16 LQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74
L +L +S+N + + L +L+ELYL N L+ P +LE++SL+ N L
Sbjct: 103 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 161
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 16 LQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74
L +L +S+N + + L +L+ELYL N L+ P +LE++SL+ N L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 16 LQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74
L +L +S+N + + L +L+ELYL N L+ P +LE++SL+ N L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 16 LQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74
L +L +S+N + + L +L+ELYL N L+ P +LE++SL+ N L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 16 LQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74
L +L +S+N + + L +L+ELYL N L+ P +LE++SL+ N L
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 29.3 bits (64), Expect = 0.53, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSL 69
L N T L L LS N S + L+ L++L N++ P NLT LER+ +
Sbjct: 125 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDI 180
Query: 70 SENEL 74
S N++
Sbjct: 181 SSNKV 185
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 29.3 bits (64), Expect = 0.57, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSL 69
L N T L L LS N S + L+ L++L N++ P NLT LER+ +
Sbjct: 125 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDI 180
Query: 70 SENEL 74
S N++
Sbjct: 181 SSNKV 185
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 6 IPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELE 65
+ S S+ T L+ L L+ N+ + L+ LKEL L N+L+ F LT L+
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQ 350
Query: 66 RMSLSEN 72
++ L N
Sbjct: 351 KIWLHTN 357
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 29.3 bits (64), Expect = 0.64, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSL 69
L N T L L LS N S + L+ L++L N++ P NLT LER+ +
Sbjct: 125 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDI 180
Query: 70 SENEL 74
S N++
Sbjct: 181 SSNKV 185
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 9 ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMS 68
A+ + YL+ L+LSYN S + L +L+E+ L +L P F L L ++
Sbjct: 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302
Query: 69 LSENEL 74
+S N+L
Sbjct: 303 VSGNQL 308
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 29 AVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSEN 72
AVP+ I ++L L LG+NR++ EF + LE + L+EN
Sbjct: 25 AVPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNEN 66
>pdb|1C7I|A Chain A, Thermophylic Pnb Esterase
Length = 489
Score = 28.9 bits (63), Expect = 0.82, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 53 EIPREFGNLTELERMSLSE 71
E+P FGNL ELERM+ +E
Sbjct: 402 ELPFVFGNLDELERMAKAE 420
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 28.5 bits (62), Expect = 0.89, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 7 PSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIP----REFGNLT 62
P+ +L LHL P L+ L+ LYL N LQ +P R+ GNLT
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFRDLGNLT 155
Query: 63 EL 64
L
Sbjct: 156 HL 157
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 27/68 (39%)
Query: 7 PSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELER 66
P LQ L+L N+ +L L L+L NR+ F L L+R
Sbjct: 121 PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDR 180
Query: 67 MSLSENEL 74
+ L +N +
Sbjct: 181 LLLHQNHV 188
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 34 IGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75
G L L +L L RN+L G P F + ++ + L EN+++
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSL 69
L N T L L LS N S + L+ L++L G N++ P NLT LER+ +
Sbjct: 130 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDI 184
Query: 70 SENEL 74
S N++
Sbjct: 185 SSNKV 189
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSL 69
L N T L L LS N S + L+ L++L G N++ P NLT LER+ +
Sbjct: 129 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDI 183
Query: 70 SENEL 74
S N++
Sbjct: 184 SSNKV 188
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 10/65 (15%)
Query: 14 TYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRL----QGEIPREFGNLTELERMSL 69
++LQ+L+L++N + P +L+ L+ L L NRL ++P LE + +
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP------ANLEILDI 533
Query: 70 SENEL 74
S N+L
Sbjct: 534 SRNQL 538
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 16 LQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74
LQ+L+LSYN + L K+ + L +N + + F L +L+ + L +N L
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 16 LQILHLSYNDF--SGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73
LQ L LS+ND S + NLS L+ L L N G + F +LE + L+
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 74 LQ 75
L
Sbjct: 409 LH 410
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPRE-FGNLTELERMS 68
L N ++LQ L+LS+N+ G + +L+ L L RL P+ F NL L+ ++
Sbjct: 369 LKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLN 428
Query: 69 LS 70
L+
Sbjct: 429 LT 430
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSL 69
L N T L L LS N S + L+ L++L G N++ P NLT LER+ +
Sbjct: 125 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDI 179
Query: 70 SENEL 74
S N++
Sbjct: 180 SSNKV 184
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSL 69
L N T L L LS N S + L+ L++L G N++ P NLT LER+ +
Sbjct: 125 LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDI 179
Query: 70 SENEL 74
S N++
Sbjct: 180 SSNKV 184
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 37 LSKLKELYLGRNRLQGEIPREFGNLTELERMSLSE 71
LSKLKEL+L N ++ F + L R+ L E
Sbjct: 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 14 TYLQILHLSYNDFSGAVPKDIGN-----LSKLKELYLGRNRLQGEIPREFGNLTELERMS 68
T L L LSYN+ D+GN L L+ L L N +Q PR F L+ L +S
Sbjct: 248 TNLTQLDLSYNNL-----HDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLS 302
Query: 69 L 69
L
Sbjct: 303 L 303
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 20 HLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74
H +D +G V +L +L+ LYLG N++ LT+L+ +SL +N++
Sbjct: 118 HNGISDINGLV-----HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQI 165
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTEL 64
G+PS L L L N + + LSKL+EL+L N ++ F + L
Sbjct: 81 GLPS-------LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 133
Query: 65 ERMSLSE 71
R+ L E
Sbjct: 134 RRLDLGE 140
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTE 63
G+PS L L L N + + LSKL+EL+L N ++ F +
Sbjct: 80 NGLPS-------LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 132
Query: 64 LERMSLSE 71
L R+ L E
Sbjct: 133 LRRLDLGE 140
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 20 HLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74
H +D +G V +L +L+ LYLG N++ LT+L+ +SL +N++
Sbjct: 121 HNGISDINGLV-----HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQI 168
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 30 VPKDI-GNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSEN 72
+P+ I G + KLK+L L N+L+ F LT L+++ L N
Sbjct: 185 MPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTE 63
GG L ++L IL+L N F + +L +LK + LG N L F N
Sbjct: 526 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 585
Query: 64 LERMSLSEN 72
L+ ++L +N
Sbjct: 586 LKSLNLQKN 594
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTE 63
GG L ++L IL+L N F + +L +LK + LG N L F N
Sbjct: 531 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 590
Query: 64 LERMSLSEN 72
L+ ++L +N
Sbjct: 591 LKSLNLQKN 599
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTE 63
GG L ++L IL+L N F + +L +LK + LG N L F N
Sbjct: 536 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 595
Query: 64 LERMSLSEN 72
L+ ++L +N
Sbjct: 596 LKSLNLQKN 604
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 20 HLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75
H +D +G V +L +L+ LYLG N++ LT+L+ +SL +N+++
Sbjct: 119 HNGISDINGLV-----HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIR 167
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEI-PREFGNLT 62
G+PS + L+ L L+ N F + + L++LY+ N + ++ R L
Sbjct: 290 NGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLE 349
Query: 63 ELERMSLSENELQ 75
L+++ LS ++++
Sbjct: 350 NLQKLDLSHSDIE 362
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 20 HLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74
H +D +G V +L +L+ LYLG N++ LT+L+ +SL +N++
Sbjct: 139 HNGISDINGLV-----HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI 186
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 20 HLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74
H +D +G V +L +L+ LYLG N++ LT+L+ +SL +N++
Sbjct: 139 HNGISDINGLV-----HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI 186
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 20 HLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74
H +D +G V +L +L+ LYLG N++ LT+L+ +SL +N++
Sbjct: 139 HNGISDINGLV-----HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI 186
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 20 HLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74
H +D +G V +L +L+ LYLG N++ LT+L+ +SL +N++
Sbjct: 116 HNGISDINGLV-----HLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI 163
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 20 HLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74
H +D +G V +L +L+ LYLG N++ LT+L+ +SL +N++
Sbjct: 116 HNGISDINGLV-----HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQI 163
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 20 HLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74
H +D +G V +L +L+ LYLG N++ LT+L+ +SL +N++
Sbjct: 119 HNGISDINGLV-----HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQI 166
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 20 HLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74
H +D +G V +L +L+ LYLG N++ LT+L+ +SL +N++
Sbjct: 121 HNGISDINGLV-----HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQI 168
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 20 HLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74
H +D +G V +L +L+ LYLG N++ LT+L+ +SL +N++
Sbjct: 141 HNGISDINGLV-----HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQI 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.138 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,240,751
Number of Sequences: 62578
Number of extensions: 79780
Number of successful extensions: 378
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 193
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)