Query 041700
Match_columns 75
No_of_seqs 126 out of 1472
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 09:45:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13855 LRR_8: Leucine rich r 99.6 8E-15 1.7E-19 62.1 3.9 61 14-74 1-61 (61)
2 PLN03150 hypothetical protein; 99.5 8.5E-14 1.8E-18 80.4 6.2 74 2-75 430-503 (623)
3 PLN00113 leucine-rich repeat r 99.4 2.2E-12 4.8E-17 77.1 5.7 73 2-74 511-583 (968)
4 PLN00113 leucine-rich repeat r 99.3 4.2E-12 9.1E-17 76.0 5.4 74 2-75 487-560 (968)
5 PLN03150 hypothetical protein; 99.1 1.6E-10 3.5E-15 67.1 5.6 72 2-73 454-526 (623)
6 KOG0617 Ras suppressor protein 99.1 7.7E-12 1.7E-16 62.8 -0.3 68 5-74 47-114 (264)
7 PF13855 LRR_8: Leucine rich r 98.9 1.2E-09 2.6E-14 46.1 2.8 45 6-50 17-61 (61)
8 PF12799 LRR_4: Leucine Rich r 98.9 4.5E-09 9.8E-14 41.7 3.4 37 14-51 1-37 (44)
9 KOG4237 Extracellular matrix p 98.8 7.3E-10 1.6E-14 61.4 0.4 67 9-75 269-335 (498)
10 KOG4194 Membrane glycoprotein 98.8 5.3E-10 1.2E-14 64.7 -0.6 40 12-51 291-330 (873)
11 KOG0472 Leucine-rich repeat pr 98.8 4E-09 8.6E-14 58.9 2.7 70 5-75 449-541 (565)
12 PF14580 LRR_9: Leucine-rich r 98.8 1E-08 2.2E-13 51.6 3.7 63 12-74 62-125 (175)
13 KOG4194 Membrane glycoprotein 98.8 3.9E-09 8.5E-14 61.2 2.2 69 7-75 262-330 (873)
14 KOG0617 Ras suppressor protein 98.7 5.8E-10 1.3E-14 56.2 -2.0 68 4-72 69-137 (264)
15 KOG0472 Leucine-rich repeat pr 98.7 4.3E-09 9.4E-14 58.7 1.1 67 5-74 242-309 (565)
16 PF12799 LRR_4: Leucine Rich r 98.7 4.5E-08 9.8E-13 38.8 3.1 37 38-75 1-37 (44)
17 PF14580 LRR_9: Leucine-rich r 98.7 2.9E-08 6.4E-13 49.9 3.0 61 12-75 40-101 (175)
18 KOG4237 Extracellular matrix p 98.5 3.2E-09 6.9E-14 58.9 -2.7 47 18-64 71-117 (498)
19 KOG0444 Cytoskeletal regulator 98.5 7.6E-08 1.7E-12 56.9 1.8 69 5-74 94-162 (1255)
20 KOG1259 Nischarin, modulator o 98.4 7.7E-08 1.7E-12 52.5 0.5 63 9-74 279-341 (490)
21 KOG0444 Cytoskeletal regulator 98.3 1.1E-07 2.4E-12 56.2 0.0 70 4-74 116-185 (1255)
22 KOG4658 Apoptotic ATPase [Sign 98.3 2.6E-07 5.7E-12 56.0 1.5 62 10-72 567-628 (889)
23 KOG0532 Leucine-rich repeat (L 98.2 3.2E-07 6.9E-12 53.3 0.3 66 6-74 181-246 (722)
24 KOG0618 Serine/threonine phosp 98.2 1.1E-07 2.5E-12 57.4 -1.8 62 7-69 376-437 (1081)
25 KOG4579 Leucine-rich repeat (L 98.2 2.7E-07 5.8E-12 45.2 -0.3 62 12-74 51-112 (177)
26 KOG0618 Serine/threonine phosp 98.1 4.6E-07 9.9E-12 54.9 -0.3 69 4-74 58-126 (1081)
27 cd00116 LRR_RI Leucine-rich re 98.1 2.2E-06 4.9E-11 46.1 2.1 65 10-74 161-233 (319)
28 KOG1259 Nischarin, modulator o 98.1 1.6E-06 3.5E-11 47.5 1.1 66 5-73 298-363 (490)
29 PRK15387 E3 ubiquitin-protein 98.1 4.9E-06 1.1E-10 50.2 3.1 56 15-75 403-458 (788)
30 PLN03210 Resistant to P. syrin 98.1 1.8E-05 4E-10 49.5 5.6 63 8-71 628-690 (1153)
31 cd00116 LRR_RI Leucine-rich re 98.1 1.6E-06 3.4E-11 46.7 1.0 18 10-27 77-94 (319)
32 KOG0532 Leucine-rich repeat (L 98.0 1.2E-06 2.6E-11 51.1 -0.6 67 5-74 112-178 (722)
33 COG4886 Leucine-rich repeat (L 98.0 4.1E-06 8.9E-11 46.6 1.5 67 6-74 131-198 (394)
34 KOG1644 U2-associated snRNP A' 97.9 2.1E-05 4.5E-10 40.8 3.8 66 9-74 59-125 (233)
35 PLN03210 Resistant to P. syrin 97.9 4.9E-05 1.1E-09 47.7 5.9 66 5-72 649-714 (1153)
36 KOG4658 Apoptotic ATPase [Sign 97.9 5.7E-06 1.2E-10 50.5 1.3 67 4-71 585-651 (889)
37 PRK15370 E3 ubiquitin-protein 97.7 0.00014 3.1E-09 44.1 5.4 54 15-74 242-295 (754)
38 PRK15370 E3 ubiquitin-protein 97.7 0.00014 3E-09 44.1 4.8 55 14-74 325-379 (754)
39 KOG4579 Leucine-rich repeat (L 97.7 2.6E-06 5.6E-11 41.8 -1.9 67 6-74 68-135 (177)
40 KOG1644 U2-associated snRNP A' 97.6 0.00011 2.4E-09 38.2 3.4 59 14-74 42-100 (233)
41 PRK15387 E3 ubiquitin-protein 97.6 0.00026 5.7E-09 43.1 5.1 40 6-51 216-255 (788)
42 KOG2739 Leucine-rich acidic nu 97.6 7.1E-05 1.5E-09 39.9 2.3 63 9-73 60-127 (260)
43 COG4886 Leucine-rich repeat (L 97.5 2.8E-05 6.1E-10 43.3 0.6 66 6-73 155-220 (394)
44 KOG0531 Protein phosphatase 1, 97.4 8.5E-05 1.8E-09 42.0 1.8 59 12-74 116-174 (414)
45 KOG0531 Protein phosphatase 1, 97.4 6E-05 1.3E-09 42.6 1.1 64 9-75 90-153 (414)
46 KOG2739 Leucine-rich acidic nu 97.4 0.00014 3E-09 38.8 2.1 68 6-75 35-104 (260)
47 KOG1859 Leucine-rich repeat pr 97.3 2.4E-05 5.3E-10 47.3 -1.5 40 10-51 183-222 (1096)
48 PF00560 LRR_1: Leucine Rich R 97.3 0.00014 3.1E-09 24.4 0.9 18 40-58 2-19 (22)
49 KOG1859 Leucine-rich repeat pr 97.2 5.5E-05 1.2E-09 45.9 -0.7 62 9-74 204-266 (1096)
50 KOG2123 Uncharacterized conser 97.1 1.8E-05 4E-10 43.0 -3.1 61 11-74 38-100 (388)
51 KOG1909 Ran GTPase-activating 97.0 0.00028 6.1E-09 39.3 1.0 66 9-74 208-282 (382)
52 KOG3665 ZYG-1-like serine/thre 96.5 0.0015 3.3E-08 39.6 1.5 59 11-71 170-229 (699)
53 PF13504 LRR_7: Leucine rich r 96.4 0.0031 6.7E-08 19.7 1.4 11 40-50 3-13 (17)
54 PF13306 LRR_5: Leucine rich r 96.3 0.022 4.7E-07 26.9 4.6 59 10-70 31-89 (129)
55 PF13306 LRR_5: Leucine rich r 96.2 0.024 5.2E-07 26.8 4.5 62 8-71 6-67 (129)
56 KOG2982 Uncharacterized conser 96.2 0.0023 5E-08 35.5 1.0 63 9-72 92-156 (418)
57 KOG3207 Beta-tubulin folding c 96.1 0.00098 2.1E-08 38.4 -0.6 14 61-74 300-313 (505)
58 smart00370 LRR Leucine-rich re 96.1 0.0081 1.7E-07 20.6 1.8 14 14-27 2-15 (26)
59 smart00369 LRR_TYP Leucine-ric 96.1 0.0081 1.7E-07 20.6 1.8 14 14-27 2-15 (26)
60 KOG2123 Uncharacterized conser 95.9 0.00016 3.5E-09 39.5 -4.0 60 9-68 58-123 (388)
61 KOG3207 Beta-tubulin folding c 95.9 0.0037 8.1E-08 36.1 1.1 64 11-74 143-209 (505)
62 KOG1909 Ran GTPase-activating 95.6 0.0089 1.9E-07 33.7 1.7 18 34-51 209-226 (382)
63 PF13516 LRR_6: Leucine Rich r 95.2 0.0043 9.3E-08 21.0 -0.3 14 14-27 2-15 (24)
64 smart00365 LRR_SD22 Leucine-ri 95.1 0.028 6.1E-07 19.6 1.8 12 63-74 3-14 (26)
65 KOG3665 ZYG-1-like serine/thre 95.1 0.014 3.1E-07 35.6 1.6 57 13-71 147-204 (699)
66 KOG2982 Uncharacterized conser 94.7 0.02 4.4E-07 32.1 1.4 59 14-72 71-131 (418)
67 COG5238 RNA1 Ran GTPase-activa 94.7 0.12 2.6E-06 28.9 4.1 66 9-74 87-169 (388)
68 COG5238 RNA1 Ran GTPase-activa 94.3 0.06 1.3E-06 30.0 2.6 38 35-72 89-130 (388)
69 PRK15386 type III secretion pr 94.3 0.13 2.8E-06 30.0 3.9 57 10-72 48-104 (426)
70 smart00368 LRR_RI Leucine rich 94.0 0.067 1.5E-06 18.8 1.7 12 63-74 3-14 (28)
71 smart00364 LRR_BAC Leucine-ric 92.8 0.091 2E-06 18.4 1.2 17 39-56 3-19 (26)
72 KOG2120 SCF ubiquitin ligase, 91.8 0.12 2.6E-06 29.2 1.4 59 11-71 310-372 (419)
73 KOG0473 Leucine-rich repeat pr 89.9 0.0031 6.7E-08 34.0 -5.4 55 17-73 68-122 (326)
74 TIGR00864 PCC polycystin catio 89.1 0.3 6.5E-06 34.6 1.7 32 20-51 1-32 (2740)
75 KOG3763 mRNA export factor TAP 85.0 0.73 1.6E-05 28.0 1.7 60 13-74 217-282 (585)
76 TIGR00864 PCC polycystin catio 82.0 1.3 2.9E-05 31.8 2.1 21 7-27 12-32 (2740)
77 smart00367 LRR_CC Leucine-rich 81.9 1.5 3.1E-05 14.8 1.4 11 62-72 2-12 (26)
78 KOG3864 Uncharacterized conser 81.0 0.63 1.4E-05 24.8 0.4 11 38-48 151-161 (221)
79 KOG1947 Leucine rich repeat pr 75.1 1.9 4.1E-05 24.9 1.2 60 13-72 242-305 (482)
80 TIGR02167 Liste_lipo_26 bacter 50.1 8.5 0.00018 13.2 0.5 10 60-69 4-13 (26)
81 smart00446 LRRcap occurring C- 41.3 12 0.00026 13.0 0.3 14 58-71 9-22 (26)
82 PF07723 LRR_2: Leucine Rich R 29.5 33 0.00072 11.6 0.7 6 41-46 3-8 (26)
83 KOG4341 F-box protein containi 27.3 33 0.00072 20.9 0.8 59 11-69 369-433 (483)
No 1
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.56 E-value=8e-15 Score=62.07 Aligned_cols=61 Identities=36% Similarity=0.518 Sum_probs=56.3
Q ss_pred CCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 14 TYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 14 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
++|+.+++++|.+....+..+..+++|+.+++++|.+....+..|.++++|+.+++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999977778999999999999999999977788999999999999999986
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.50 E-value=8.5e-14 Score=80.36 Aligned_cols=74 Identities=35% Similarity=0.596 Sum_probs=68.7
Q ss_pred ceeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 2 ~~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
+.|.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|+.+..+++|+.|++++|+++
T Consensus 430 L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 56788999999999999999999999899999999999999999999999999999999999999999999763
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.36 E-value=2.2e-12 Score=77.12 Aligned_cols=73 Identities=40% Similarity=0.717 Sum_probs=48.8
Q ss_pred ceeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 2 ~~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+.+.+|+.+..+++|+.+++++|.+.+..|..+..+++|+.+++++|.+.+..|..+..+.+|+.+++++|++
T Consensus 511 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 511 LSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred ceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 3455666666666666666666666666666666666677777776666666666666666677777766654
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.32 E-value=4.2e-12 Score=75.98 Aligned_cols=74 Identities=36% Similarity=0.650 Sum_probs=66.0
Q ss_pred ceeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 2 ~~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
+++.+|..+..+++|+.+++++|.+.+..|..+..+++|+.+++++|.+.+..|..+..+++|+.+++++|+++
T Consensus 487 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 560 (968)
T PLN00113 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560 (968)
T ss_pred cCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccc
Confidence 45677888888999999999999998888989999999999999999999889999999999999999998763
No 5
>PLN03150 hypothetical protein; Provisional
Probab=99.14 E-value=1.6e-10 Score=67.13 Aligned_cols=72 Identities=35% Similarity=0.707 Sum_probs=63.8
Q ss_pred ceeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccC-CCCCEEecCCCc
Q 041700 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNL-TELERMSLSENE 73 (75)
Q Consensus 2 ~~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l-~~L~~l~l~~n~ 73 (75)
+.|.+|..+..++.|+.|++++|.+.+..|..+..+++|+.+++++|.+.+.+|..+... .++..+++.+|.
T Consensus 454 l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 454 IRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred ccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 568899999999999999999999999999999999999999999999999999887764 356677777764
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.12 E-value=7.7e-12 Score=62.84 Aligned_cols=68 Identities=37% Similarity=0.648 Sum_probs=60.7
Q ss_pred ccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 5 ~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.+|+.+..+.+|+.+.+.+|++. ..|.+++.++.|+.++++.|++. ..|+.|+.++.|+.+|+..|++
T Consensus 47 ~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl 114 (264)
T KOG0617|consen 47 VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNL 114 (264)
T ss_pred ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcccccc
Confidence 46778888999999999999998 88888999999999999999988 8899999999999999988876
No 7
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=1.2e-09 Score=46.05 Aligned_cols=45 Identities=36% Similarity=0.516 Sum_probs=40.7
Q ss_pred cChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCccc
Q 041700 6 IPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRL 50 (75)
Q Consensus 6 ~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l 50 (75)
-++.|..+++|+++++++|.+....+..|..+++|+.+++++|.+
T Consensus 17 ~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 17 PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 346888999999999999999988888999999999999999874
No 8
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.88 E-value=4.5e-09 Score=41.68 Aligned_cols=37 Identities=32% Similarity=0.539 Sum_probs=23.9
Q ss_pred CCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccc
Q 041700 14 TYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQ 51 (75)
Q Consensus 14 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~ 51 (75)
++|+.+++++|.+. ..|..+..+++|+.+++++|.++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35677777777776 44555677777777777777765
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.83 E-value=7.3e-10 Score=61.38 Aligned_cols=67 Identities=28% Similarity=0.400 Sum_probs=59.2
Q ss_pred hccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
.|..+++|+++++++|.++.+.+.+|-+..+++.+.+..|.+....-..|.++..|++|++.+|+|+
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence 6788999999999999999888899999999999999999988665667888999999999999874
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.81 E-value=5.3e-10 Score=64.65 Aligned_cols=40 Identities=38% Similarity=0.385 Sum_probs=16.7
Q ss_pred CCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccc
Q 041700 12 NCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQ 51 (75)
Q Consensus 12 ~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~ 51 (75)
++++|+.|+++.|.|..+.++.|...++|.+|++++|.+.
T Consensus 291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred ccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence 3344444444444444344444444444444444444443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.81 E-value=4e-09 Score=58.88 Aligned_cols=70 Identities=34% Similarity=0.592 Sum_probs=56.9
Q ss_pred ccChhccCCCCCcEEEcccccCc-----------------------ccCChhhcCCCCCcEEEccCcccccccCcccccC
Q 041700 5 GIPSALSNCTYLQILHLSYNDFS-----------------------GAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNL 61 (75)
Q Consensus 5 ~~p~~~~~l~~l~~l~l~~~~~~-----------------------~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l 61 (75)
.+|.+++.+..|+.+++++|++. ...++.++.+.+|..+++.+|.+. .+|..+++|
T Consensus 449 ~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnm 527 (565)
T KOG0472|consen 449 DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNM 527 (565)
T ss_pred hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccc
Confidence 46777777777888877766543 233444788999999999999999 789999999
Q ss_pred CCCCEEecCCCcCC
Q 041700 62 TELERMSLSENELQ 75 (75)
Q Consensus 62 ~~L~~l~l~~n~~~ 75 (75)
.+++++.+.+|+|+
T Consensus 528 tnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 528 TNLRHLELDGNPFR 541 (565)
T ss_pred cceeEEEecCCccC
Confidence 99999999999874
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.79 E-value=1e-08 Score=51.57 Aligned_cols=63 Identities=30% Similarity=0.355 Sum_probs=16.4
Q ss_pred CCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccc-cCcccccCCCCCEEecCCCcC
Q 041700 12 NCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGE-IPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 12 ~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~-~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.++.|+.|++++|.++...+.-...+++|+.+++++|.+... .-..+..+++|+.+++.+|++
T Consensus 62 ~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 62 GLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp --TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred ChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 344444555555554422111112344555555555554311 112334455555555555543
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.78 E-value=3.9e-09 Score=61.22 Aligned_cols=69 Identities=20% Similarity=0.212 Sum_probs=61.9
Q ss_pred ChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 7 PSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 7 p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
.+.|..|.+++.+++..|+++..-..++.++..|+.|++++|.++...++.|..+++|..|+++.|+|+
T Consensus 262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred CcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence 457888999999999999999777788899999999999999999888999999999999999999874
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.72 E-value=5.8e-10 Score=56.25 Aligned_cols=68 Identities=28% Similarity=0.517 Sum_probs=42.7
Q ss_pred eccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccc-cccCcccccCCCCCEEecCCC
Q 041700 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQ-GEIPREFGNLTELERMSLSEN 72 (75)
Q Consensus 4 ~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~-~~~p~~~~~l~~L~~l~l~~n 72 (75)
.++|..++.+++|+.+.+..|++. ..|..|+.++.|..+++.+|.+. ..+|..|..+..|+.+.+++|
T Consensus 69 e~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn 137 (264)
T KOG0617|consen 69 EELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN 137 (264)
T ss_pred hhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC
Confidence 356777777777777777777776 67777777777777777766654 234544444444444444443
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.72 E-value=4.3e-09 Score=58.75 Aligned_cols=67 Identities=31% Similarity=0.484 Sum_probs=49.5
Q ss_pred ccChhcc-CCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 5 GIPSALS-NCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 5 ~~p~~~~-~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.+|.+.. .+..+..+|+..|++. ..|+.++-+++|.++++++|.++ .+|-.++++ .|+.+.+.+|++
T Consensus 242 ~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 242 MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCch
Confidence 4555554 6777777788888876 77777777777888888888877 567777777 777777777765
No 16
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.67 E-value=4.5e-08 Score=38.78 Aligned_cols=37 Identities=38% Similarity=0.678 Sum_probs=31.2
Q ss_pred CCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 38 SKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 38 ~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
++|+.+++++|.++ .+|..+..+++|+.+++++|+|+
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 46899999999999 67777999999999999999874
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.66 E-value=2.9e-08 Score=49.92 Aligned_cols=61 Identities=31% Similarity=0.477 Sum_probs=27.1
Q ss_pred CCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCccc-ccCCCCCEEecCCCcCC
Q 041700 12 NCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREF-GNLTELERMSLSENELQ 75 (75)
Q Consensus 12 ~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~-~~l~~L~~l~l~~n~~~ 75 (75)
.+.+|+.+++++|.+.... .+..+++|+.+++++|.++ .+.+.+ ..+++|+.|++++|+|.
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKIS 101 (175)
T ss_dssp T-TT--EEE-TTS--S--T--T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---
T ss_pred hhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCC
Confidence 4678999999999998442 4677899999999999998 444444 46899999999999873
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.53 E-value=3.2e-09 Score=58.94 Aligned_cols=47 Identities=28% Similarity=0.416 Sum_probs=22.2
Q ss_pred EEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCC
Q 041700 18 ILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTEL 64 (75)
Q Consensus 18 ~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L 64 (75)
.+++..|.|+.+.+.+|+.+++|+.++++.|.|+...|..|.++.++
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l 117 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASL 117 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhh
Confidence 34444444444444444444444444444444444444444444443
No 19
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.48 E-value=7.6e-08 Score=56.88 Aligned_cols=69 Identities=33% Similarity=0.395 Sum_probs=44.4
Q ss_pred ccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 5 ~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
-+|+.+..+..|..+++++|++. ..|..+-..+++..+++++|.+....-+.|.++..|-.|++++|++
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred CCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 36777777777777787777776 6676666666666777777766632223345555566666666554
No 20
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.40 E-value=7.7e-08 Score=52.45 Aligned_cols=63 Identities=27% Similarity=0.365 Sum_probs=46.5
Q ss_pred hccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.+..+..|+.+++++|.++ ....+.+-.+.++.++++.|.+. . .+.+..+++|..+|+++|.+
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~-v~nLa~L~~L~~LDLS~N~L 341 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-T-VQNLAELPQLQLLDLSGNLL 341 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-e-ehhhhhcccceEeecccchh
Confidence 4445667778888888887 55666777788888888888876 2 24477788888888888765
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.32 E-value=1.1e-07 Score=56.23 Aligned_cols=70 Identities=31% Similarity=0.426 Sum_probs=58.6
Q ss_pred eccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 4 ~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.++|..+-..+++-.|++++|.|..+...-+-.+..|-++++++|++. .+|..+..+..|++|.+++|++
T Consensus 116 ~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 116 REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChh
Confidence 357888888888889999999998555566777888899999999998 7788888889999999999875
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.32 E-value=2.6e-07 Score=56.00 Aligned_cols=62 Identities=29% Similarity=0.465 Sum_probs=54.7
Q ss_pred ccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCC
Q 041700 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSEN 72 (75)
Q Consensus 10 ~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n 72 (75)
|..++.|+.||+++|.-.+..|..++.+.+|++|++++..+. .+|..+..++.|.+|++..+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccc
Confidence 667999999999988766689999999999999999999988 88999999999999988765
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.21 E-value=3.2e-07 Score=53.30 Aligned_cols=66 Identities=27% Similarity=0.492 Sum_probs=40.0
Q ss_pred cChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 6 IPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 6 ~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+|..++++.+|+.+.+..|.+. ..|.++..++ |..++++.|++. .+|-.|..|..|+++-+.+|++
T Consensus 181 lpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 181 LPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred chHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCC
Confidence 3444555555555555555554 4455555443 666777777766 5666777777777777777765
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.19 E-value=1.1e-07 Score=57.38 Aligned_cols=62 Identities=32% Similarity=0.502 Sum_probs=36.6
Q ss_pred ChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEec
Q 041700 7 PSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSL 69 (75)
Q Consensus 7 p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l 69 (75)
-+.+.++++|+.|++++|++..+....+..+..|+.|++++|+++ .+|..+..+..|++|..
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 334556677777777777776455455666666777777777766 44544433333333333
No 25
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.18 E-value=2.7e-07 Score=45.17 Aligned_cols=62 Identities=24% Similarity=0.298 Sum_probs=45.6
Q ss_pred CCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 12 NCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 12 ~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
....|..+.+++|.+....+..-..++.++.+++.+|.++ ..|..+..++.|+.++++.|++
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPL 112 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcc
Confidence 3445666788888887443333344557888888888888 6788888888888888888876
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.12 E-value=4.6e-07 Score=54.93 Aligned_cols=69 Identities=32% Similarity=0.473 Sum_probs=53.5
Q ss_pred eccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 4 ~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+..|..+..+..|+.+.++.|.+. ..|.+...+.+++++.+..|.+. .+|..+..+++|+.++++.|++
T Consensus 58 ~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f 126 (1081)
T KOG0618|consen 58 SSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHF 126 (1081)
T ss_pred ccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhcc
Confidence 455666667777777777777776 66677777888888888888877 7788888888888888888875
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.10 E-value=2.2e-06 Score=46.11 Aligned_cols=65 Identities=28% Similarity=0.395 Sum_probs=29.6
Q ss_pred ccCCCCCcEEEcccccCccc----CChhhcCCCCCcEEEccCcccccc----cCcccccCCCCCEEecCCCcC
Q 041700 10 LSNCTYLQILHLSYNDFSGA----VPKDIGNLSKLKELYLGRNRLQGE----IPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 10 ~~~l~~l~~l~l~~~~~~~~----~~~~~~~~~~l~~l~l~~~~l~~~----~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+..++.|+.+++++|.+... .+..+...++|+.+++++|.+.+. +...+..+++|+.+++++|.+
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 33444555555555554421 112233334555555555554321 122333445555666655543
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.06 E-value=1.6e-06 Score=47.49 Aligned_cols=66 Identities=24% Similarity=0.275 Sum_probs=42.6
Q ss_pred ccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCc
Q 041700 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73 (75)
Q Consensus 5 ~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~ 73 (75)
.+...+.-.+.++.++++.|.+... +.+..+++|+.+++++|.+. ....+-..+-+++++.+++|.
T Consensus 298 ~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 298 QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhh
Confidence 3445556678888888888888733 33777888888888888876 333333344445555554443
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.06 E-value=4.9e-06 Score=50.17 Aligned_cols=56 Identities=29% Similarity=0.333 Sum_probs=39.3
Q ss_pred CCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 15 YLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 15 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
+|+.|++++|.+. ..|.. ..+|+.+++++|.++ .+|..+..+.++..+++++|+++
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 4555566666555 23322 235667777778877 67888888999999999999874
No 30
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.06 E-value=1.8e-05 Score=49.47 Aligned_cols=63 Identities=22% Similarity=0.294 Sum_probs=29.7
Q ss_pred hhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCC
Q 041700 8 SALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSE 71 (75)
Q Consensus 8 ~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~ 71 (75)
..+..+++|+.++++++......| .+..+++|+.+++.+|.....+|..+..+++|+.+++++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~ 690 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR 690 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence 334445555555555443222333 244445555555555433234555555555555555554
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.05 E-value=1.6e-06 Score=46.70 Aligned_cols=18 Identities=39% Similarity=0.326 Sum_probs=8.5
Q ss_pred ccCCCCCcEEEcccccCc
Q 041700 10 LSNCTYLQILHLSYNDFS 27 (75)
Q Consensus 10 ~~~l~~l~~l~l~~~~~~ 27 (75)
+..+++|+.++++++.+.
T Consensus 77 l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 77 LTKGCGLQELDLSDNALG 94 (319)
T ss_pred HHhcCceeEEEccCCCCC
Confidence 334445555555554443
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.96 E-value=1.2e-06 Score=51.07 Aligned_cols=67 Identities=37% Similarity=0.614 Sum_probs=53.3
Q ss_pred ccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 5 ~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.+|..+..+..|..++++.|.++ ..|..++.++ |+.+.+++|++. .+|+.++....|..++.+.|++
T Consensus 112 ~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEI 178 (722)
T ss_pred ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhh
Confidence 46777788888888888888887 7777777776 788888888887 6788888777888888877765
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.96 E-value=4.1e-06 Score=46.60 Aligned_cols=67 Identities=34% Similarity=0.550 Sum_probs=38.6
Q ss_pred cChhccCCC-CCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 6 IPSALSNCT-YLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 6 ~p~~~~~l~-~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+|+...... +|+.+++++|.+. ..+..+..++.|+.+++++|.+. ..|......+.|+.+++++|++
T Consensus 131 i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i 198 (394)
T COG4886 131 IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKI 198 (394)
T ss_pred Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCcc
Confidence 344444442 6666666666665 44344556666666666666666 4444444556666666666654
No 34
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.95 E-value=2.1e-05 Score=40.79 Aligned_cols=66 Identities=26% Similarity=0.237 Sum_probs=43.8
Q ss_pred hccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccc-cCcccccCCCCCEEecCCCcC
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGE-IPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~-~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.|..++.|..|.+.+|.|+.+.|.--..++++..|.+.+|.++.. .-+-+..++.|+.|.+-+|++
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPV 125 (233)
T ss_pred cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCch
Confidence 455667777777788877766666555566777777777777621 112355677777777777764
No 35
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.94 E-value=4.9e-05 Score=47.68 Aligned_cols=66 Identities=35% Similarity=0.403 Sum_probs=46.7
Q ss_pred ccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCC
Q 041700 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSEN 72 (75)
Q Consensus 5 ~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n 72 (75)
.+|+ +..+++|+.|++++|......|..+..+.+|+.+++.+|.....+|..+ .+.+|+.+++++|
T Consensus 649 ~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 649 EIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred cCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 4453 6778888888888876555778888888888888888764333566544 5666777766665
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.87 E-value=5.7e-06 Score=50.48 Aligned_cols=67 Identities=30% Similarity=0.387 Sum_probs=57.8
Q ss_pred eccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCC
Q 041700 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSE 71 (75)
Q Consensus 4 ~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~ 71 (75)
+++|..++.+-+|++|++++..+. ..|..+..+..|.+|++..+.-....|.....+++|+++.+..
T Consensus 585 ~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 585 SKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred CcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 578999999999999999999998 9999999999999999997765445567777799999988743
No 37
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.74 E-value=0.00014 Score=44.05 Aligned_cols=54 Identities=28% Similarity=0.460 Sum_probs=27.8
Q ss_pred CCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 15 YLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 15 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+|+.+++++|.+. ..|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|++
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~L 295 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSI 295 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcc
Confidence 3444444444444 3333222 34666666666665 3454432 3566777776655
No 38
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.68 E-value=0.00014 Score=44.12 Aligned_cols=55 Identities=20% Similarity=0.409 Sum_probs=30.3
Q ss_pred CCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 14 TYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 14 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
++|+.|++++|.++ ..|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|++
T Consensus 325 ~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~L 379 (754)
T PRK15370 325 PGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNAL 379 (754)
T ss_pred ccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcC
Confidence 45556666666655 2343332 45666666666665 4454432 4566666666654
No 39
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.67 E-value=2.6e-06 Score=41.83 Aligned_cols=67 Identities=27% Similarity=0.425 Sum_probs=49.1
Q ss_pred cChhccC-CCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 6 IPSALSN-CTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 6 ~p~~~~~-l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+|+.|.. .+..+.+++.+|.++ ..|.++..++.|+.+++..|.+. ..|+.+..+.++..|+..+|.+
T Consensus 68 fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 68 FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence 4444443 346777888888887 77777888888888888888887 6777777777777777766643
No 40
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.63 E-value=0.00011 Score=38.23 Aligned_cols=59 Identities=24% Similarity=0.350 Sum_probs=47.5
Q ss_pred CCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 14 TYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 14 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.....++++.|.+. .-+.+..+++|.++.+.+|++....|..-..++++..|.+.+|.|
T Consensus 42 d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 45667888888886 334577889999999999999976666666678899999999976
No 41
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.59 E-value=0.00026 Score=43.13 Aligned_cols=40 Identities=23% Similarity=0.443 Sum_probs=17.7
Q ss_pred cChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccc
Q 041700 6 IPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQ 51 (75)
Q Consensus 6 ~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~ 51 (75)
+|+.+. .+++.|.+..|.++ ..|. .+++|+.|++++|.++
T Consensus 216 LP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt 255 (788)
T PRK15387 216 LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT 255 (788)
T ss_pred CCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC
Confidence 454433 24455555555554 2222 1234455555554444
No 42
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.57 E-value=7.1e-05 Score=39.89 Aligned_cols=63 Identities=24% Similarity=0.263 Sum_probs=41.9
Q ss_pred hccCCCCCcEEEcccc--cCcccCChhhcCCCCCcEEEccCcccccccCccc---ccCCCCCEEecCCCc
Q 041700 9 ALSNCTYLQILHLSYN--DFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREF---GNLTELERMSLSENE 73 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~--~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~---~~l~~L~~l~l~~n~ 73 (75)
.+..+++|++|.++.| .+....+.....+++|+.+.++.|++. .++.+ ..+.+|..+++.+|.
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhhcchhhhhcccCC
Confidence 3456778888888888 665555555556688888888888876 23333 344566677776654
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.53 E-value=2.8e-05 Score=43.34 Aligned_cols=66 Identities=42% Similarity=0.666 Sum_probs=51.3
Q ss_pred cChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCc
Q 041700 6 IPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73 (75)
Q Consensus 6 ~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~ 73 (75)
+|..+..++.|+.++++.|.+. ..+........|..+++++|.+. .+|........|..+.+++|+
T Consensus 155 l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 155 LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 4456788999999999999998 55555557788999999999988 667665555668888888773
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.45 E-value=8.5e-05 Score=41.96 Aligned_cols=59 Identities=31% Similarity=0.412 Sum_probs=26.9
Q ss_pred CCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 12 NCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 12 ~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.+++|+++++++|.|+...+ +..+..|+.|++.+|.+.. ...+..+..|+.+++++|.+
T Consensus 116 ~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISD--ISGLESLKSLKLLDLSYNRI 174 (414)
T ss_pred hhhcchheeccccccccccc--hhhccchhhheeccCcchh--ccCCccchhhhcccCCcchh
Confidence 34455555555555543222 2333335555555555541 12333345555555555543
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.43 E-value=6e-05 Score=42.55 Aligned_cols=64 Identities=27% Similarity=0.311 Sum_probs=50.6
Q ss_pred hccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
.+..+++++.+++..|.+.. ....+..+.+|+.+++++|.+... ..+..+..|+.|++.+|.|+
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLIS 153 (414)
T ss_pred ccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheeccCcch
Confidence 36678899999999999983 333367789999999999999732 45666777999999999874
No 46
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.39 E-value=0.00014 Score=38.81 Aligned_cols=68 Identities=22% Similarity=0.309 Sum_probs=46.8
Q ss_pred cChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCc--ccccccCcccccCCCCCEEecCCCcCC
Q 041700 6 IPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRN--RLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 6 ~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~--~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
+....-....++.+.+.+..++. -..+..+++|+.|.++.| .+.+.++-....+++|+++++++|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 44444445566666666666652 234667789999999999 555455545566799999999999874
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.29 E-value=2.4e-05 Score=47.30 Aligned_cols=40 Identities=38% Similarity=0.446 Sum_probs=22.3
Q ss_pred ccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccc
Q 041700 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQ 51 (75)
Q Consensus 10 ~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~ 51 (75)
+.-++.++.|++++|++... +.+..+++|..|+++.|.+.
T Consensus 183 Lqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred HHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc
Confidence 33445556666666665522 25555666666666666655
No 48
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.27 E-value=0.00014 Score=24.38 Aligned_cols=18 Identities=44% Similarity=0.630 Sum_probs=8.8
Q ss_pred CcEEEccCcccccccCccc
Q 041700 40 LKELYLGRNRLQGEIPREF 58 (75)
Q Consensus 40 l~~l~l~~~~l~~~~p~~~ 58 (75)
|+++++++|.++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555555 444443
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.20 E-value=5.5e-05 Score=45.90 Aligned_cols=62 Identities=37% Similarity=0.402 Sum_probs=47.0
Q ss_pred hccCCCCCcEEEcccccCcccCCh-hhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPK-DIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~-~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.+..|+.|+.||+++|.+. ..|. ...++ .|+.|.+.+|.+.. -..+..+.+|+.||++.|-+
T Consensus 204 ~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHh--hhhHHhhhhhhccchhHhhh
Confidence 4567899999999999987 4443 23333 38999999998872 35677888899999988754
No 50
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=1.8e-05 Score=43.02 Aligned_cols=61 Identities=31% Similarity=0.470 Sum_probs=45.7
Q ss_pred cCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccC--cccccCCCCCEEecCCCcC
Q 041700 11 SNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIP--REFGNLTELERMSLSENEL 74 (75)
Q Consensus 11 ~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p--~~~~~l~~L~~l~l~~n~~ 74 (75)
..|+.|+.|.++-|+|+... .+..+.+|+.+++..|.|. .+. ..+.++++|+.|++..|+.
T Consensus 38 ~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPC 100 (388)
T ss_pred HhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCc
Confidence 35788899999999988443 4677888888888888876 333 2466788888888888763
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.03 E-value=0.00028 Score=39.30 Aligned_cols=66 Identities=32% Similarity=0.482 Sum_probs=43.3
Q ss_pred hccCCCCCcEEEcccccCccc----CChhhcCCCCCcEEEccCcccccccCcc----c-ccCCCCCEEecCCCcC
Q 041700 9 ALSNCTYLQILHLSYNDFSGA----VPKDIGNLSKLKELYLGRNRLQGEIPRE----F-GNLTELERMSLSENEL 74 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~----~~~~~~~~~~l~~l~l~~~~l~~~~p~~----~-~~l~~L~~l~l~~n~~ 74 (75)
.+..|++|++|++..|.++.. ....++.+++|+.+++++|.+....... + .+.++|..+.+.+|.|
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 456788888888888877643 3345666777888888887776322222 2 2356777777777765
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.51 E-value=0.0015 Score=39.56 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=28.2
Q ss_pred cCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCccccc-ccCcccccCCCCCEEecCC
Q 041700 11 SNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQG-EIPREFGNLTELERMSLSE 71 (75)
Q Consensus 11 ~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~-~~p~~~~~l~~L~~l~l~~ 71 (75)
.++++|..||+++..++.. .-++.+++|+.|.+.+-.+.. ..-..+..+++|+.||++.
T Consensus 170 ~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred hccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 3456666666666665522 334444555555444333321 1111233456666666654
No 53
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.42 E-value=0.0031 Score=19.75 Aligned_cols=11 Identities=55% Similarity=0.758 Sum_probs=3.5
Q ss_pred CcEEEccCccc
Q 041700 40 LKELYLGRNRL 50 (75)
Q Consensus 40 l~~l~l~~~~l 50 (75)
|+.|++++|.+
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 54
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.30 E-value=0.022 Score=26.91 Aligned_cols=59 Identities=22% Similarity=0.377 Sum_probs=22.3
Q ss_pred ccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecC
Q 041700 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLS 70 (75)
Q Consensus 10 ~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~ 70 (75)
|..++.++.+.+..+ +.......+..+.+++.+.+.. .+.......|..+.+++.+.+.
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 444445555555443 3333334444444455555543 2221222334444555555543
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.23 E-value=0.024 Score=26.77 Aligned_cols=62 Identities=21% Similarity=0.336 Sum_probs=39.1
Q ss_pred hhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCC
Q 041700 8 SALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSE 71 (75)
Q Consensus 8 ~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~ 71 (75)
..|..+.+|+.+.+.. .+.......|..+.+++.+.+..+ +.......|.++++++.+.+.+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 4677888999999875 566677778889989999999775 5544456788887898888864
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.0023 Score=35.55 Aligned_cols=63 Identities=25% Similarity=0.357 Sum_probs=35.0
Q ss_pred hccCCCCCcEEEcccccCcccCChhh-cCCCCCcEEEccCccccccc-CcccccCCCCCEEecCCC
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDI-GNLSKLKELYLGRNRLQGEI-PREFGNLTELERMSLSEN 72 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~-~~~~~l~~l~l~~~~l~~~~-p~~~~~l~~L~~l~l~~n 72 (75)
.+..++.++.|+++.|.+.... +.+ -...++..+.+.+..+.+.- ......++.++.+.++.|
T Consensus 92 ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 92 ILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred HHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 3445677777777777765322 222 34556677766666555422 223445555666666655
No 57
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.00098 Score=38.36 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=8.1
Q ss_pred CCCCCEEecCCCcC
Q 041700 61 LTELERMSLSENEL 74 (75)
Q Consensus 61 l~~L~~l~l~~n~~ 74 (75)
+++|+.|++..|++
T Consensus 300 f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 300 FPKLEYLNISENNI 313 (505)
T ss_pred cccceeeecccCcc
Confidence 34566666666654
No 58
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.05 E-value=0.0081 Score=20.65 Aligned_cols=14 Identities=43% Similarity=0.468 Sum_probs=7.3
Q ss_pred CCCcEEEcccccCc
Q 041700 14 TYLQILHLSYNDFS 27 (75)
Q Consensus 14 ~~l~~l~l~~~~~~ 27 (75)
++|+.+++.+|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 59
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.05 E-value=0.0081 Score=20.65 Aligned_cols=14 Identities=43% Similarity=0.468 Sum_probs=7.3
Q ss_pred CCCcEEEcccccCc
Q 041700 14 TYLQILHLSYNDFS 27 (75)
Q Consensus 14 ~~l~~l~l~~~~~~ 27 (75)
++|+.+++.+|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555554
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.00016 Score=39.53 Aligned_cols=60 Identities=28% Similarity=0.405 Sum_probs=45.4
Q ss_pred hccCCCCCcEEEcccccCcccCC-hhhcCCCCCcEEEccCcccccccCcc-----cccCCCCCEEe
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVP-KDIGNLSKLKELYLGRNRLQGEIPRE-----FGNLTELERMS 68 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~l~~~~p~~-----~~~l~~L~~l~ 68 (75)
.+..|+.|+.+++..|.|..... .-++++++|+.||+..|...+..+.. +.-+++|+.||
T Consensus 58 pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 58 PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 45678899999999999875433 23788999999999999887655543 45677777665
No 61
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.0037 Score=36.13 Aligned_cols=64 Identities=30% Similarity=0.290 Sum_probs=33.1
Q ss_pred cCCCCCcEEEcccccCcccCC--hhhcCCCCCcEEEccCcccccccCcc-cccCCCCCEEecCCCcC
Q 041700 11 SNCTYLQILHLSYNDFSGAVP--KDIGNLSKLKELYLGRNRLQGEIPRE-FGNLTELERMSLSENEL 74 (75)
Q Consensus 11 ~~l~~l~~l~l~~~~~~~~~~--~~~~~~~~l~~l~l~~~~l~~~~p~~-~~~l~~L~~l~l~~n~~ 74 (75)
..|++++.|++++|-+....+ .-...+++|+.|+++.|++.....+. -..++.++.|.++++.+
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGl 209 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGL 209 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCC
Confidence 446666777777765553222 22445666777777766665211111 11344555555555543
No 62
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.61 E-value=0.0089 Score=33.67 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=8.4
Q ss_pred hcCCCCCcEEEccCcccc
Q 041700 34 IGNLSKLKELYLGRNRLQ 51 (75)
Q Consensus 34 ~~~~~~l~~l~l~~~~l~ 51 (75)
+..+++|+.|++.+|.++
T Consensus 209 l~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred HHhCCcceeeecccchhh
Confidence 334444555555544443
No 63
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.18 E-value=0.0043 Score=20.97 Aligned_cols=14 Identities=36% Similarity=0.482 Sum_probs=5.6
Q ss_pred CCCcEEEcccccCc
Q 041700 14 TYLQILHLSYNDFS 27 (75)
Q Consensus 14 ~~l~~l~l~~~~~~ 27 (75)
++|+.|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34445555555443
No 64
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=95.14 E-value=0.028 Score=19.64 Aligned_cols=12 Identities=42% Similarity=0.775 Sum_probs=6.8
Q ss_pred CCCEEecCCCcC
Q 041700 63 ELERMSLSENEL 74 (75)
Q Consensus 63 ~L~~l~l~~n~~ 74 (75)
+|+.|+++.|+|
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 455555655554
No 65
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.12 E-value=0.014 Score=35.64 Aligned_cols=57 Identities=16% Similarity=0.270 Sum_probs=33.9
Q ss_pred CCCCcEEEcccccCcccC-ChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCC
Q 041700 13 CTYLQILHLSYNDFSGAV-PKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSE 71 (75)
Q Consensus 13 l~~l~~l~l~~~~~~~~~-~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~ 71 (75)
+|.|+.|.+.+-.+.... ......+++|..||+++..++. + .+++.+++|+.|.+.+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRN 204 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccC
Confidence 567777766665543221 2234456777777777777662 2 5566666776666544
No 66
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=0.02 Score=32.06 Aligned_cols=59 Identities=25% Similarity=0.197 Sum_probs=28.1
Q ss_pred CCCcEEEcccccCccc--CChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCC
Q 041700 14 TYLQILHLSYNDFSGA--VPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSEN 72 (75)
Q Consensus 14 ~~l~~l~l~~~~~~~~--~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n 72 (75)
+.++.+++.+|.++.. ...-+..++++++++++.|.+...+...-....+|+.+-+.+.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT 131 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC
Confidence 4445556666655521 1122445566666666666665221111123445555555443
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.67 E-value=0.12 Score=28.87 Aligned_cols=66 Identities=29% Similarity=0.370 Sum_probs=43.3
Q ss_pred hccCCCCCcEEEcccccCcccCChhh----cCCCCCcEEEccCcccccccCc-------------ccccCCCCCEEecCC
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDI----GNLSKLKELYLGRNRLQGEIPR-------------EFGNLTELERMSLSE 71 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~----~~~~~l~~l~l~~~~l~~~~p~-------------~~~~l~~L~~l~l~~ 71 (75)
.+..|+.++.++++.|.+....|..+ +....+..+.+.+|.+....-. -..+-+.|+.+..++
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 45678889999999998877666543 4456688888888876511111 123345677777777
Q ss_pred CcC
Q 041700 72 NEL 74 (75)
Q Consensus 72 n~~ 74 (75)
|++
T Consensus 167 NRl 169 (388)
T COG5238 167 NRL 169 (388)
T ss_pred chh
Confidence 765
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.33 E-value=0.06 Score=29.95 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=20.2
Q ss_pred cCCCCCcEEEccCcccccccCcc----cccCCCCCEEecCCC
Q 041700 35 GNLSKLKELYLGRNRLQGEIPRE----FGNLTELERMSLSEN 72 (75)
Q Consensus 35 ~~~~~l~~l~l~~~~l~~~~p~~----~~~l~~L~~l~l~~n 72 (75)
-.|++++..++++|.+....|+. ++....|.+|.+++|
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 34556666666666655444432 333445666666555
No 69
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.29 E-value=0.13 Score=29.97 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=30.7
Q ss_pred ccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCC
Q 041700 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSEN 72 (75)
Q Consensus 10 ~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n 72 (75)
+..+.++..|+++++.+. ..| .-..+|+.|.+.++.-...+|+.+. .+|+.|.+++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP---~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP---VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC---CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 334677778888877766 444 1233577777765322124444331 34555555544
No 70
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=94.04 E-value=0.067 Score=18.80 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=7.6
Q ss_pred CCCEEecCCCcC
Q 041700 63 ELERMSLSENEL 74 (75)
Q Consensus 63 ~L~~l~l~~n~~ 74 (75)
+|+.|++++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 466666666655
No 71
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=92.83 E-value=0.091 Score=18.40 Aligned_cols=17 Identities=41% Similarity=0.712 Sum_probs=12.1
Q ss_pred CCcEEEccCcccccccCc
Q 041700 39 KLKELYLGRNRLQGEIPR 56 (75)
Q Consensus 39 ~l~~l~l~~~~l~~~~p~ 56 (75)
+|+.|++++|.+. .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 5677788888777 5665
No 72
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.80 E-value=0.12 Score=29.20 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=39.7
Q ss_pred cCCCCCcEEEccccc-CcccCChhhcCCCCCcEEEccCcccccccCcc---cccCCCCCEEecCC
Q 041700 11 SNCTYLQILHLSYND-FSGAVPKDIGNLSKLKELYLGRNRLQGEIPRE---FGNLTELERMSLSE 71 (75)
Q Consensus 11 ~~l~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~---~~~l~~L~~l~l~~ 71 (75)
..|+++..||++.+. ++.-+...+-.++.|+++.++.|.. ..|.. +...++|.+|++.+
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 467888889988774 3333445566777888888877763 34544 45567788887755
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.87 E-value=0.0031 Score=33.97 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=28.1
Q ss_pred cEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCc
Q 041700 17 QILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73 (75)
Q Consensus 17 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~ 73 (75)
..++++.|.+. ..|..+.....+..+.+..|..+ ..|..++..+.++.++.-.|+
T Consensus 68 ~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 68 VRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred HHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCc
Confidence 33444444443 44444444444444444555554 556666666666666655554
No 74
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=89.08 E-value=0.3 Score=34.59 Aligned_cols=32 Identities=28% Similarity=0.294 Sum_probs=27.5
Q ss_pred EcccccCcccCChhhcCCCCCcEEEccCcccc
Q 041700 20 HLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQ 51 (75)
Q Consensus 20 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~ 51 (75)
+|++|+|....+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 47889998777788888999999999999876
No 75
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=85.01 E-value=0.73 Score=27.98 Aligned_cols=60 Identities=27% Similarity=0.210 Sum_probs=29.8
Q ss_pred CCCCcEEEcccccCcccCC--hhhcCCCCCcEEEccCc--ccccccCcccc--cCCCCCEEecCCCcC
Q 041700 13 CTYLQILHLSYNDFSGAVP--KDIGNLSKLKELYLGRN--RLQGEIPREFG--NLTELERMSLSENEL 74 (75)
Q Consensus 13 l~~l~~l~l~~~~~~~~~~--~~~~~~~~l~~l~l~~~--~l~~~~p~~~~--~l~~L~~l~l~~n~~ 74 (75)
.+.+..+.++.|++..... .-.+..+.+..|+|++| .+. ..+ .+. +...|+.+.+.+|++
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~-el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SES-ELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chh-hhhhhcCCCHHHeeecCCcc
Confidence 3445566666776652221 12334566777777776 332 111 111 223456666666654
No 76
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=82.00 E-value=1.3 Score=31.82 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=17.6
Q ss_pred ChhccCCCCCcEEEcccccCc
Q 041700 7 PSALSNCTYLQILHLSYNDFS 27 (75)
Q Consensus 7 p~~~~~l~~l~~l~l~~~~~~ 27 (75)
+..|..+.+|+.|+|++|.+.
T Consensus 12 ~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 12 EGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred hHHhccCCCceEEEeeCCccc
Confidence 456777899999999999876
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=81.86 E-value=1.5 Score=14.82 Aligned_cols=11 Identities=27% Similarity=0.386 Sum_probs=6.7
Q ss_pred CCCCEEecCCC
Q 041700 62 TELERMSLSEN 72 (75)
Q Consensus 62 ~~L~~l~l~~n 72 (75)
++|+.|+++++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45666666655
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.00 E-value=0.63 Score=24.79 Aligned_cols=11 Identities=27% Similarity=0.350 Sum_probs=5.7
Q ss_pred CCCcEEEccCc
Q 041700 38 SKLKELYLGRN 48 (75)
Q Consensus 38 ~~l~~l~l~~~ 48 (75)
++|+.|+++.|
T Consensus 151 ~~L~~L~lsgC 161 (221)
T KOG3864|consen 151 PSLQDLDLSGC 161 (221)
T ss_pred cchheeeccCC
Confidence 45555555544
No 79
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=75.14 E-value=1.9 Score=24.88 Aligned_cols=60 Identities=22% Similarity=0.222 Sum_probs=25.9
Q ss_pred CCCCcEEEccccc-CcccCChhhc-CCCCCcEEEccCcc-cccc-cCcccccCCCCCEEecCCC
Q 041700 13 CTYLQILHLSYND-FSGAVPKDIG-NLSKLKELYLGRNR-LQGE-IPREFGNLTELERMSLSEN 72 (75)
Q Consensus 13 l~~l~~l~l~~~~-~~~~~~~~~~-~~~~l~~l~l~~~~-l~~~-~p~~~~~l~~L~~l~l~~n 72 (75)
+++++.++++... ++...-..+. .++.|+.+.+..+. ++.. +......++.|+.++++.+
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 4555555555554 3322222222 24556666544443 2211 1122334555666666543
No 80
>TIGR02167 Liste_lipo_26 bacterial surface protein 26-residue repeat. This model describes a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, L. innocua, Enterococcus faecalis, Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=50.10 E-value=8.5 Score=13.19 Aligned_cols=10 Identities=10% Similarity=0.315 Sum_probs=4.2
Q ss_pred cCCCCCEEec
Q 041700 60 NLTELERMSL 69 (75)
Q Consensus 60 ~l~~L~~l~l 69 (75)
++.++..+++
T Consensus 4 ~~~~~~~ldl 13 (26)
T TIGR02167 4 GCSSLTSLDV 13 (26)
T ss_pred cccccccccc
Confidence 3444444444
No 81
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=41.27 E-value=12 Score=13.01 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=9.2
Q ss_pred cccCCCCCEEecCC
Q 041700 58 FGNLTELERMSLSE 71 (75)
Q Consensus 58 ~~~l~~L~~l~l~~ 71 (75)
+..+++|+.||...
T Consensus 9 i~~LPqL~~LD~~~ 22 (26)
T smart00446 9 IRLLPQLRKLDXXX 22 (26)
T ss_pred HHHCCccceecccc
Confidence 45677777777643
No 82
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=29.47 E-value=33 Score=11.60 Aligned_cols=6 Identities=50% Similarity=0.501 Sum_probs=2.3
Q ss_pred cEEEcc
Q 041700 41 KELYLG 46 (75)
Q Consensus 41 ~~l~l~ 46 (75)
+++++.
T Consensus 3 KtL~L~ 8 (26)
T PF07723_consen 3 KTLHLD 8 (26)
T ss_pred eEEEee
Confidence 333333
No 83
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=27.25 E-value=33 Score=20.89 Aligned_cols=59 Identities=25% Similarity=0.301 Sum_probs=28.5
Q ss_pred cCCCCCcEEEcccccCcccC-----ChhhcCCCCCcEEEccCcccc-cccCcccccCCCCCEEec
Q 041700 11 SNCTYLQILHLSYNDFSGAV-----PKDIGNLSKLKELYLGRNRLQ-GEIPREFGNLTELERMSL 69 (75)
Q Consensus 11 ~~l~~l~~l~l~~~~~~~~~-----~~~~~~~~~l~~l~l~~~~l~-~~~p~~~~~l~~L~~l~l 69 (75)
.+|+.|+++.++++...... ...-..+..+..+.++++... ...-+....+++|+.+++
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 35666666666655432111 112234455666666665543 122233445556655554
Done!