Query 041700
Match_columns 75
No_of_seqs 126 out of 1472
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 16:40:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041700.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041700hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.6 1.3E-15 4.3E-20 88.2 7.2 74 1-74 643-716 (768)
2 3g39_A Variable lymphocyte rec 99.6 4.4E-15 1.5E-19 73.0 7.8 74 2-75 42-115 (170)
3 1w8a_A SLIT protein; signaling 99.6 5.5E-15 1.9E-19 73.8 6.9 65 10-74 50-114 (192)
4 2r9u_A Variable lymphocyte rec 99.6 1.1E-14 3.7E-19 71.9 7.8 74 2-75 45-118 (174)
5 2wfh_A SLIT homolog 2 protein 99.6 3.5E-14 1.2E-18 71.0 8.0 70 5-74 45-114 (193)
6 1ogq_A PGIP-2, polygalacturona 99.6 1.4E-14 4.7E-19 76.8 6.7 73 2-74 89-161 (313)
7 2v9t_B SLIT homolog 2 protein 99.6 4.1E-14 1.4E-18 71.9 7.8 69 6-74 72-140 (220)
8 2v70_A SLIT-2, SLIT homolog 2 99.5 5.1E-14 1.8E-18 71.6 7.8 65 9-73 76-140 (220)
9 1w8a_A SLIT protein; signaling 99.5 5.1E-14 1.8E-18 70.3 7.4 74 2-75 66-139 (192)
10 3rgz_A Protein brassinosteroid 99.5 3.7E-14 1.3E-18 82.1 7.4 74 2-75 620-693 (768)
11 2v70_A SLIT-2, SLIT homolog 2 99.5 4.5E-14 1.5E-18 71.8 6.7 73 2-74 93-165 (220)
12 2ifg_A High affinity nerve gro 99.5 7.2E-14 2.5E-18 74.7 7.3 70 5-75 23-93 (347)
13 2wfh_A SLIT homolog 2 protein 99.5 1.3E-13 4.5E-18 69.0 7.4 73 2-74 66-138 (193)
14 4g8a_A TOLL-like receptor 4; l 99.5 7.9E-14 2.7E-18 78.5 7.2 70 5-74 67-136 (635)
15 2v9t_B SLIT homolog 2 protein 99.5 1.4E-13 4.7E-18 70.0 7.4 73 3-75 45-117 (220)
16 3e6j_A Variable lymphocyte rec 99.5 1.9E-13 6.4E-18 69.8 7.9 70 5-74 55-124 (229)
17 4g8a_A TOLL-like receptor 4; l 99.5 1.9E-13 6.6E-18 77.0 7.9 71 4-74 508-579 (635)
18 1ogq_A PGIP-2, polygalacturona 99.5 1.2E-13 4.3E-18 73.1 6.6 73 2-74 113-186 (313)
19 2o6r_A Variable lymphocyte rec 99.5 3.6E-13 1.2E-17 66.3 7.8 66 9-74 47-112 (177)
20 2r9u_A Variable lymphocyte rec 99.5 3.3E-13 1.1E-17 66.6 7.4 70 4-75 25-94 (174)
21 3g39_A Variable lymphocyte rec 99.5 3.6E-13 1.2E-17 66.2 7.2 69 5-75 23-91 (170)
22 3m19_A Variable lymphocyte rec 99.5 4.5E-13 1.5E-17 69.1 7.8 69 6-74 51-119 (251)
23 2o6r_A Variable lymphocyte rec 99.5 6.8E-13 2.3E-17 65.3 7.8 73 3-75 65-137 (177)
24 2je0_A Acidic leucine-rich nuc 99.5 2E-13 6.8E-18 65.6 5.6 69 4-74 32-100 (149)
25 2ifg_A High affinity nerve gro 99.5 4.4E-13 1.5E-17 71.6 7.5 73 2-75 44-116 (347)
26 3e6j_A Variable lymphocyte rec 99.5 8.2E-13 2.8E-17 67.5 7.9 66 8-74 82-147 (229)
27 4eco_A Uncharacterized protein 99.5 2.5E-13 8.7E-18 77.5 6.6 72 2-74 195-286 (636)
28 3m19_A Variable lymphocyte rec 99.4 9.5E-13 3.3E-17 67.9 7.9 66 9-74 102-167 (251)
29 2xot_A Amphoterin-induced prot 99.4 6.4E-13 2.2E-17 71.6 7.2 67 8-74 82-148 (361)
30 2o6s_A Variable lymphocyte rec 99.4 1.4E-12 4.6E-17 65.6 7.9 64 11-74 73-136 (208)
31 2o6s_A Variable lymphocyte rec 99.4 1.4E-12 4.7E-17 65.6 7.8 66 9-74 47-112 (208)
32 4b8c_D Glucose-repressible alc 99.4 6E-13 2E-17 77.1 6.9 69 5-75 261-329 (727)
33 3v47_A TOLL-like receptor 5B a 99.4 8.8E-13 3E-17 72.3 7.3 61 12-72 321-381 (455)
34 2ell_A Acidic leucine-rich nuc 99.4 3.4E-13 1.2E-17 65.9 5.1 68 5-74 40-107 (168)
35 3t6q_A CD180 antigen; protein- 99.4 9.5E-13 3.3E-17 74.3 7.1 72 3-74 46-117 (606)
36 3zyi_A Leucine-rich repeat-con 99.4 1.4E-12 4.7E-17 71.9 7.5 73 2-74 87-159 (452)
37 3v47_A TOLL-like receptor 5B a 99.4 1.3E-12 4.4E-17 71.7 7.3 74 2-75 335-408 (455)
38 3rfs_A Internalin B, repeat mo 99.4 2.3E-12 8E-17 67.1 7.9 70 5-74 100-169 (272)
39 3vq2_A TLR4, TOLL-like recepto 99.4 1.3E-12 4.6E-17 73.7 7.4 71 4-74 46-116 (606)
40 2z81_A CD282 antigen, TOLL-lik 99.4 9.1E-13 3.1E-17 73.7 6.3 72 3-74 39-110 (549)
41 1p9a_G Platelet glycoprotein I 99.4 3.4E-12 1.2E-16 67.2 7.7 67 8-74 118-184 (290)
42 2xot_A Amphoterin-induced prot 99.4 2.2E-12 7.6E-17 69.5 7.2 73 3-75 52-125 (361)
43 1dce_A Protein (RAB geranylger 99.4 2.7E-12 9.1E-17 72.8 7.5 68 5-74 477-545 (567)
44 2o6q_A Variable lymphocyte rec 99.4 4.5E-12 1.5E-16 65.9 7.8 62 11-72 130-191 (270)
45 4ezg_A Putative uncharacterize 99.4 2.7E-12 9.2E-17 64.2 6.7 67 6-74 104-171 (197)
46 1xku_A Decorin; proteoglycan, 99.4 3.9E-12 1.3E-16 67.6 7.7 73 2-75 204-276 (330)
47 4fcg_A Uncharacterized protein 99.4 5E-12 1.7E-16 67.5 7.9 68 6-73 221-288 (328)
48 1p9a_G Platelet glycoprotein I 99.4 3.8E-12 1.3E-16 67.0 7.3 71 5-75 91-161 (290)
49 4ecn_A Leucine-rich repeat pro 99.4 1.7E-12 6E-17 76.5 6.6 71 2-73 437-526 (876)
50 2id5_A Lingo-1, leucine rich r 99.4 3.7E-12 1.3E-16 70.4 7.4 71 4-74 46-116 (477)
51 3zyj_A Leucine-rich repeat-con 99.4 4.6E-12 1.6E-16 69.6 7.6 72 3-74 77-148 (440)
52 3vq2_A TLR4, TOLL-like recepto 99.4 4.4E-12 1.5E-16 71.7 7.6 68 6-73 72-139 (606)
53 1ozn_A Reticulon 4 receptor; N 99.4 4.8E-12 1.6E-16 66.1 7.3 60 13-72 152-211 (285)
54 2z66_A Variable lymphocyte rec 99.4 4.4E-12 1.5E-16 66.8 7.1 69 6-74 167-235 (306)
55 1ozn_A Reticulon 4 receptor; N 99.4 7E-12 2.4E-16 65.5 7.8 62 11-72 102-163 (285)
56 2z66_A Variable lymphocyte rec 99.4 3.8E-12 1.3E-16 67.0 6.6 71 4-74 189-260 (306)
57 2z62_A TOLL-like receptor 4, v 99.4 5.6E-12 1.9E-16 65.6 7.2 65 9-73 47-111 (276)
58 1wwl_A Monocyte differentiatio 99.4 2.3E-12 8E-17 68.2 5.8 72 2-74 107-185 (312)
59 2ft3_A Biglycan; proteoglycan, 99.3 4.2E-12 1.4E-16 67.6 6.6 71 4-75 207-277 (332)
60 4fcg_A Uncharacterized protein 99.3 7.2E-12 2.5E-16 66.9 7.5 73 2-74 241-313 (328)
61 2o6q_A Variable lymphocyte rec 99.3 1.1E-11 3.8E-16 64.5 7.8 65 9-73 56-120 (270)
62 3oja_B Anopheles plasmodium-re 99.3 8.2E-12 2.8E-16 70.9 7.8 68 7-74 116-183 (597)
63 2z63_A TOLL-like receptor 4, v 99.3 4.8E-12 1.6E-16 70.9 6.7 70 5-74 461-530 (570)
64 2z80_A TOLL-like receptor 2, v 99.3 5.1E-12 1.7E-16 67.7 6.5 67 8-74 70-136 (353)
65 2z63_A TOLL-like receptor 4, v 99.3 6.9E-12 2.4E-16 70.3 7.2 70 5-74 43-112 (570)
66 3zyj_A Leucine-rich repeat-con 99.3 6.1E-12 2.1E-16 69.1 6.8 71 4-74 221-291 (440)
67 3oja_B Anopheles plasmodium-re 99.3 1.1E-11 3.7E-16 70.4 7.8 72 3-74 88-159 (597)
68 3t6q_A CD180 antigen; protein- 99.3 8E-12 2.7E-16 70.6 7.2 73 2-74 69-141 (606)
69 2id5_A Lingo-1, leucine rich r 99.3 8.2E-12 2.8E-16 69.0 7.0 72 3-74 69-140 (477)
70 3o6n_A APL1; leucine-rich repe 99.3 1.4E-11 4.9E-16 66.7 7.8 66 8-73 111-176 (390)
71 3zyi_A Leucine-rich repeat-con 99.3 7.2E-12 2.5E-16 69.1 6.7 71 4-74 232-302 (452)
72 2z62_A TOLL-like receptor 4, v 99.3 1.4E-11 4.8E-16 64.1 7.4 68 7-74 93-161 (276)
73 4ezg_A Putative uncharacterize 99.3 8E-12 2.7E-16 62.5 6.3 66 8-73 82-147 (197)
74 2je0_A Acidic leucine-rich nuc 99.3 4.4E-12 1.5E-16 60.9 5.0 67 8-74 58-125 (149)
75 2xwt_C Thyrotropin receptor; s 99.3 3.5E-12 1.2E-16 65.3 4.9 68 7-74 48-117 (239)
76 2ell_A Acidic leucine-rich nuc 99.3 9.4E-12 3.2E-16 60.8 6.1 66 9-74 66-132 (168)
77 3o6n_A APL1; leucine-rich repe 99.3 2E-11 6.7E-16 66.2 7.8 68 7-74 86-153 (390)
78 1dce_A Protein (RAB geranylger 99.3 1.4E-11 4.7E-16 69.9 7.4 67 5-75 455-521 (567)
79 1ziw_A TOLL-like receptor 3; i 99.3 1.2E-11 4E-16 70.7 7.0 66 7-72 66-131 (680)
80 1a9n_A U2A', U2A'; complex (nu 99.3 9.1E-12 3.1E-16 61.3 5.7 65 9-74 59-125 (176)
81 4b8c_D Glucose-repressible alc 99.3 1.3E-11 4.5E-16 71.6 6.4 69 5-75 238-306 (727)
82 4eco_A Uncharacterized protein 99.3 4.2E-12 1.4E-16 72.5 4.1 69 6-74 239-317 (636)
83 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 2E-11 6.8E-16 68.7 6.8 42 9-50 71-112 (562)
84 3j0a_A TOLL-like receptor 5; m 99.3 1.3E-11 4.5E-16 72.3 6.1 68 7-74 66-135 (844)
85 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 3.5E-11 1.2E-15 67.8 7.3 69 5-75 45-113 (562)
86 2z7x_B TOLL-like receptor 1, v 99.2 2.2E-11 7.5E-16 67.9 6.3 61 14-74 21-81 (520)
87 1ziw_A TOLL-like receptor 3; i 99.2 2.9E-11 9.8E-16 69.2 6.8 72 3-74 38-109 (680)
88 2z7x_B TOLL-like receptor 1, v 99.2 1.5E-11 5E-16 68.6 5.4 63 8-73 39-101 (520)
89 4glp_A Monocyte differentiatio 99.2 4E-11 1.4E-15 63.4 6.0 73 2-74 103-181 (310)
90 3j0a_A TOLL-like receptor 5; m 99.2 5.5E-11 1.9E-15 69.7 6.9 69 6-74 306-374 (844)
91 2z81_A CD282 antigen, TOLL-lik 99.2 4.9E-11 1.7E-15 66.8 6.2 72 2-73 62-134 (549)
92 4ecn_A Leucine-rich repeat pro 99.2 7.3E-12 2.5E-16 73.9 2.8 70 5-74 480-560 (876)
93 2ft3_A Biglycan; proteoglycan, 99.2 1.2E-10 4E-15 62.0 7.1 42 9-50 73-114 (332)
94 1xku_A Decorin; proteoglycan, 99.2 2E-10 6.9E-15 61.1 7.6 43 9-51 71-113 (330)
95 1a9n_A U2A', U2A'; complex (nu 99.2 1E-10 3.5E-15 57.6 5.8 60 14-75 42-101 (176)
96 2z80_A TOLL-like receptor 2, v 99.2 1.1E-10 3.9E-15 62.5 6.3 70 2-72 88-159 (353)
97 1wwl_A Monocyte differentiatio 99.1 3.5E-11 1.2E-15 63.7 3.7 61 14-74 149-213 (312)
98 1ds9_A Outer arm dynein; leuci 99.1 3.2E-12 1.1E-16 63.9 -0.2 71 2-75 30-106 (198)
99 2xwt_C Thyrotropin receptor; s 99.1 1.6E-10 5.6E-15 59.1 5.4 64 7-72 73-140 (239)
100 4fmz_A Internalin; leucine ric 99.1 1.8E-10 6.2E-15 61.5 5.6 63 10-74 283-345 (347)
101 3oja_A Leucine-rich immune mol 99.1 4.5E-10 1.5E-14 62.7 6.2 37 37-74 190-226 (487)
102 3oja_A Leucine-rich immune mol 99.1 3.1E-10 1.1E-14 63.4 5.4 69 4-74 134-203 (487)
103 3o53_A Protein LRIM1, AGAP0063 99.1 6.6E-11 2.3E-15 62.8 2.2 64 9-74 29-92 (317)
104 3goz_A Leucine-rich repeat-con 99.0 1.3E-10 4.3E-15 62.7 3.1 73 2-74 10-92 (362)
105 4glp_A Monocyte differentiatio 99.0 7.6E-10 2.6E-14 58.6 5.9 64 6-74 240-306 (310)
106 4fmz_A Internalin; leucine ric 99.0 9.5E-10 3.2E-14 58.7 6.2 65 9-75 260-324 (347)
107 3o53_A Protein LRIM1, AGAP0063 99.0 8.5E-10 2.9E-14 58.6 5.5 60 13-74 190-249 (317)
108 1h6t_A Internalin B; cell adhe 99.0 2.8E-09 9.5E-14 56.2 7.1 38 34-73 152-189 (291)
109 1m9s_A Internalin B; cell inva 99.0 3.7E-09 1.3E-13 60.6 7.5 61 10-74 127-187 (605)
110 1h6t_A Internalin B; cell adhe 98.9 4.9E-09 1.7E-13 55.2 6.7 60 10-73 64-123 (291)
111 1h6u_A Internalin H; cell adhe 98.9 5.3E-09 1.8E-13 55.4 6.8 38 34-73 169-206 (308)
112 4ay9_X Follicle-stimulating ho 98.9 1.8E-09 6.1E-14 58.0 4.9 66 9-74 49-116 (350)
113 1h6u_A Internalin H; cell adhe 98.9 7.6E-09 2.6E-13 54.8 7.1 60 10-73 59-118 (308)
114 2ast_B S-phase kinase-associat 98.9 2.9E-10 9.9E-15 60.4 1.6 61 12-72 91-152 (336)
115 1xeu_A Internalin C; cellular 98.9 8.3E-09 2.8E-13 53.7 6.9 17 58-74 124-140 (263)
116 2ast_B S-phase kinase-associat 98.9 1.2E-09 4.2E-14 58.0 3.8 69 6-74 110-181 (336)
117 1xeu_A Internalin C; cellular 98.9 4.1E-09 1.4E-13 54.8 5.4 60 11-74 38-97 (263)
118 1o6v_A Internalin A; bacterial 98.9 1.3E-08 4.4E-13 56.4 7.0 61 10-74 64-124 (466)
119 2ca6_A RAN GTPase-activating p 98.9 7.5E-10 2.6E-14 60.0 1.9 69 6-74 236-315 (386)
120 2ca6_A RAN GTPase-activating p 98.9 5.6E-10 1.9E-14 60.5 1.3 39 35-73 91-133 (386)
121 3rw6_A Nuclear RNA export fact 98.9 8.4E-09 2.9E-13 54.1 5.5 62 11-74 167-232 (267)
122 1m9s_A Internalin B; cell inva 98.8 2.2E-08 7.5E-13 57.5 7.5 61 10-74 105-165 (605)
123 1ds9_A Outer arm dynein; leuci 98.8 4.3E-11 1.5E-15 59.9 -3.3 62 10-73 89-151 (198)
124 3g06_A SSPH2 (leucine-rich rep 98.8 2.5E-08 8.7E-13 57.4 7.5 59 12-75 239-297 (622)
125 3cvr_A Invasion plasmid antige 98.8 1.3E-08 4.6E-13 58.1 6.1 62 6-75 175-243 (571)
126 3goz_A Leucine-rich repeat-con 98.8 1.6E-09 5.4E-14 58.4 2.3 67 8-74 44-121 (362)
127 1o6v_A Internalin A; bacterial 98.8 2.2E-08 7.5E-13 55.5 6.8 16 58-73 349-364 (466)
128 3bz5_A Internalin-J, INLJ; leu 98.8 3.4E-08 1.2E-12 54.9 7.2 60 9-74 59-118 (457)
129 1z7x_W Ribonuclease inhibitor; 98.8 1.7E-09 5.8E-14 59.5 1.1 70 6-75 333-411 (461)
130 3bz5_A Internalin-J, INLJ; leu 98.7 2.2E-08 7.5E-13 55.7 5.2 64 7-75 35-98 (457)
131 1jl5_A Outer protein YOPM; leu 98.7 8E-08 2.7E-12 53.4 6.7 62 6-74 146-207 (454)
132 4ay9_X Follicle-stimulating ho 98.7 4.3E-08 1.5E-12 52.7 5.4 68 5-74 23-92 (350)
133 3sb4_A Hypothetical leucine ri 98.7 9.4E-08 3.2E-12 51.0 6.2 65 8-74 244-309 (329)
134 3cvr_A Invasion plasmid antige 98.6 1.8E-07 6.1E-12 53.6 6.9 54 13-74 139-192 (571)
135 1jl5_A Outer protein YOPM; leu 98.6 3.1E-07 1E-11 51.1 6.8 60 9-74 190-249 (454)
136 1z7x_W Ribonuclease inhibitor; 98.5 3.4E-08 1.2E-12 54.4 1.5 69 6-74 48-125 (461)
137 3g06_A SSPH2 (leucine-rich rep 98.5 6E-07 2E-11 51.9 6.6 52 14-73 61-112 (622)
138 3un9_A NLR family member X1; l 98.5 4.4E-08 1.5E-12 53.3 1.8 66 9-74 178-251 (372)
139 3rw6_A Nuclear RNA export fact 98.5 3.2E-07 1.1E-11 48.2 4.6 62 5-68 187-257 (267)
140 3ogk_B Coronatine-insensitive 98.4 6E-08 2E-12 54.8 0.3 63 13-75 462-526 (592)
141 3sb4_A Hypothetical leucine ri 98.3 2E-06 6.8E-11 45.9 5.3 62 7-69 266-328 (329)
142 3un9_A NLR family member X1; l 98.2 1.1E-06 3.8E-11 47.9 3.0 64 12-75 153-224 (372)
143 2p1m_B Transport inhibitor res 98.2 2E-07 6.9E-12 52.7 -0.1 62 13-74 455-518 (594)
144 3rfe_A Platelet glycoprotein I 98.2 1.5E-05 5.1E-10 37.7 6.1 36 39-74 32-67 (130)
145 1io0_A Tropomodulin; LRR prote 98.1 2.2E-06 7.6E-11 42.6 2.6 14 38-51 93-106 (185)
146 3e4g_A ATP synthase subunit S, 98.0 4.2E-06 1.4E-10 41.6 2.9 34 15-48 62-95 (176)
147 1io0_A Tropomodulin; LRR prote 98.0 1.7E-06 5.8E-11 43.0 1.5 68 8-75 30-106 (185)
148 3ogk_B Coronatine-insensitive 98.0 1.1E-06 3.9E-11 49.7 0.5 62 12-73 162-231 (592)
149 3e4g_A ATP synthase subunit S, 98.0 2.3E-06 8E-11 42.5 1.5 65 9-73 80-150 (176)
150 2p1m_B Transport inhibitor res 97.9 1.2E-06 4.1E-11 49.6 0.1 64 10-74 428-493 (594)
151 4fdw_A Leucine rich hypothetic 97.9 3.8E-05 1.3E-09 42.4 5.9 62 9-73 295-356 (401)
152 4fdw_A Leucine rich hypothetic 97.9 6.2E-05 2.1E-09 41.6 5.9 65 7-72 264-333 (401)
153 3rfe_A Platelet glycoprotein I 97.9 4.3E-05 1.5E-09 36.1 4.7 45 5-51 24-68 (130)
154 2ra8_A Uncharacterized protein 97.9 4.6E-06 1.6E-10 45.5 1.3 62 13-74 251-319 (362)
155 4h09_A Hypothetical leucine ri 97.7 0.00016 5.3E-09 39.3 5.3 62 9-71 281-342 (379)
156 4gt6_A Cell surface protein; l 97.6 0.00043 1.5E-08 37.9 6.8 63 8-72 305-367 (394)
157 4fs7_A Uncharacterized protein 97.6 0.00017 5.9E-09 39.4 5.1 62 8-71 314-375 (394)
158 4h09_A Hypothetical leucine ri 97.1 0.0037 1.3E-07 33.9 6.5 63 9-72 258-320 (379)
159 4gt6_A Cell surface protein; l 96.9 0.0058 2E-07 33.5 6.1 60 10-71 284-343 (394)
160 4fs7_A Uncharacterized protein 96.9 0.0038 1.3E-07 34.2 5.4 62 9-72 292-353 (394)
161 1pgv_A TMD-1, tropomodulin TMD 96.7 0.0024 8.3E-08 32.3 3.5 62 13-74 40-110 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.2 0.0027 9.3E-08 32.2 1.9 63 10-72 66-136 (197)
163 2ra8_A Uncharacterized protein 96.2 0.0053 1.8E-07 33.7 3.1 14 61-74 251-264 (362)
164 2lz0_A Uncharacterized protein 93.9 0.18 6.3E-06 22.6 4.1 40 8-48 14-53 (100)
165 2lz0_A Uncharacterized protein 90.3 0.68 2.3E-05 20.7 4.7 47 24-71 6-52 (100)
166 1v18_B APC protein, adenomatou 23.7 39 0.0013 12.8 1.0 18 54-71 15-32 (47)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.63 E-value=1.3e-15 Score=88.15 Aligned_cols=74 Identities=42% Similarity=0.723 Sum_probs=63.2
Q ss_pred CceeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 1 MFHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 1 ~~~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+++|.+|..++.++.|+.+++++|.+++..|..+..+++|+.+++++|.+++.+|..+..+++|+.+++++|++
T Consensus 643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 35678888888888888888888888888888888888888888888888888888888888888888888875
No 2
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.62 E-value=4.4e-15 Score=73.04 Aligned_cols=74 Identities=24% Similarity=0.272 Sum_probs=60.5
Q ss_pred ceeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 2 ~~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
+++..|..|..+++|+.|++++|.+....+..+..+++|+.+++++|.+.+..+..|..+++|+.+++++|++.
T Consensus 42 i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 42 ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 44555777888999999999999988666667788889999999999988665567888899999999998763
No 3
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=5.5e-15 Score=73.82 Aligned_cols=65 Identities=26% Similarity=0.438 Sum_probs=32.1
Q ss_pred ccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 10 ~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+..+++|+.|++++|.+++..|..+..+++|+.+++++|.+.+..+..|..+++|+.|++++|++
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 114 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 44455555555555555544444455555555555555555444444444444555555544443
No 4
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.60 E-value=1.1e-14 Score=71.94 Aligned_cols=74 Identities=23% Similarity=0.275 Sum_probs=56.6
Q ss_pred ceeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 2 ~~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
+++..|..|..+++|+.|++++|.+....+..+..+++|+.+++++|.+.+..+..|..+++|+.+++++|++.
T Consensus 45 l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 45 ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 34455677888888888888888888655556778888888888888888554455888888888888888763
No 5
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=3.5e-14 Score=71.04 Aligned_cols=70 Identities=34% Similarity=0.487 Sum_probs=49.6
Q ss_pred ccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 5 ~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.+|..+..+++|+.|++++|.++...+..+..+++|+.+++++|.+.+..+..|.++++|+.|++++|.+
T Consensus 45 ~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l 114 (193)
T 2wfh_A 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114 (193)
T ss_dssp SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCC
T ss_pred hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCC
Confidence 4566677777777777777777766666677777777777777777765556677777777777777765
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.56 E-value=1.4e-14 Score=76.81 Aligned_cols=73 Identities=27% Similarity=0.494 Sum_probs=46.1
Q ss_pred ceeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 2 ~~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+.+.+|..+..+++|+++++++|.+.+..|..+..+++|+.+++++|.+.+..|..+..+++|+++++++|.+
T Consensus 89 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 161 (313)
T 1ogq_A 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161 (313)
T ss_dssp EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcc
Confidence 3445666666666666666666666655666666666666666666666655666666666666666666654
No 7
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.55 E-value=4.1e-14 Score=71.93 Aligned_cols=69 Identities=26% Similarity=0.280 Sum_probs=36.8
Q ss_pred cChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 6 IPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 6 ~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.|+.|..+++|+.|++++|.+....+..+..+++|+.+++++|.+.+..|..|..+++|+.|++++|.+
T Consensus 72 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 72 APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140 (220)
T ss_dssp CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcC
Confidence 345555555555555555555533333445555555555555555544445555555555555555544
No 8
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=5.1e-14 Score=71.59 Aligned_cols=65 Identities=25% Similarity=0.285 Sum_probs=28.7
Q ss_pred hccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCc
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~ 73 (75)
.|..+++|+.|++++|.+....+..+..+++|+.+++++|.+.+..|..|..+++|+.+++++|.
T Consensus 76 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 76 AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ 140 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC
T ss_pred HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc
Confidence 34444444444444444443333334444444444444444443334444444444444444443
No 9
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.54 E-value=5.1e-14 Score=70.31 Aligned_cols=74 Identities=27% Similarity=0.372 Sum_probs=65.5
Q ss_pred ceeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 2 ~~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
+++..|..|..+++|+.+++++|.+....+..+..+++|+.+++++|.+.+..|..+..+++|+.+++++|+++
T Consensus 66 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 66 LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 45666888999999999999999999888888889999999999999999888888999999999999999864
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.53 E-value=3.7e-14 Score=82.15 Aligned_cols=74 Identities=38% Similarity=0.648 Sum_probs=69.8
Q ss_pred ceeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 2 ~~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
+.|.+|..+..++.|+.+++++|.+++..|..+..++.|+.+++++|.+++.+|..++.+++|+.|++++|+++
T Consensus 620 ~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp EEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred ecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999873
No 11
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.53 E-value=4.5e-14 Score=71.80 Aligned_cols=73 Identities=21% Similarity=0.227 Sum_probs=65.8
Q ss_pred ceeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 2 ~~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+++..|..|..+++|+.|++++|.+....+..+..+++|+.+++++|.+.+..|..|..+++|+.+++++|++
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 3444566788999999999999999988889999999999999999999977789999999999999999986
No 12
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.52 E-value=7.2e-14 Score=74.66 Aligned_cols=70 Identities=23% Similarity=0.311 Sum_probs=54.1
Q ss_pred ccChhccCCCCCcEEEccc-ccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 5 GIPSALSNCTYLQILHLSY-NDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 5 ~~p~~~~~l~~l~~l~l~~-~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
.+|. +..+++|+.|++++ |.+....+..+..+.+|+.|++++|.+.+..|..|..+++|+.|++++|+++
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence 3677 77777888888875 8887666677788888888888888887777777788888888888888763
No 13
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=1.3e-13 Score=68.96 Aligned_cols=73 Identities=27% Similarity=0.345 Sum_probs=64.5
Q ss_pred ceeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 2 ~~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+++..+..|..+++|+.|++++|.+....+..+..+++|+.+++++|.+....+..|..+++|+.+++++|++
T Consensus 66 i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 66 ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 3445567799999999999999999988888899999999999999999966556789999999999999986
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.51 E-value=7.9e-14 Score=78.52 Aligned_cols=70 Identities=24% Similarity=0.239 Sum_probs=47.2
Q ss_pred ccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 5 ~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
..|..|..+++|+.|++++|.++...+.+|..+++|++|++++|.+.+..+..|.++.+|++|++++|++
T Consensus 67 l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l 136 (635)
T 4g8a_A 67 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 136 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCC
T ss_pred CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcC
Confidence 3345667777777777777777766666677777777777777777644445566677777777766654
No 15
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=1.4e-13 Score=70.01 Aligned_cols=73 Identities=26% Similarity=0.290 Sum_probs=60.0
Q ss_pred eeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 3 HGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 3 ~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
++..+..|..+++|+.|++++|.+....+..+..+++|+.+++++|.+....+..|.++++|+.|++++|.++
T Consensus 45 ~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 45 KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence 3334557888899999999999998888888999999999999999988555556788999999999998763
No 16
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=1.9e-13 Score=69.85 Aligned_cols=70 Identities=24% Similarity=0.261 Sum_probs=35.2
Q ss_pred ccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 5 ~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
..|..|..+++|+.|++++|.+....+..+..+++|+.+++++|.+.+..+..|..+++|+.|++++|.+
T Consensus 55 ~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 55 LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence 3344455555555555555555533334445555555555555555533333344455555555555443
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.49 E-value=1.9e-13 Score=76.95 Aligned_cols=71 Identities=23% Similarity=0.306 Sum_probs=37.5
Q ss_pred eccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccC-CCCCEEecCCCcC
Q 041700 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNL-TELERMSLSENEL 74 (75)
Q Consensus 4 ~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l-~~L~~l~l~~n~~ 74 (75)
+..|..|..+++|+.|++++|.+....+..+..+++|+.+++++|.+.+..|+.+..+ .+|+.+++++|++
T Consensus 508 ~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 508 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred CcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 3344455555555555555555554444555555555555555555554445555544 3455555555554
No 18
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.49 E-value=1.2e-13 Score=73.15 Aligned_cols=73 Identities=36% Similarity=0.646 Sum_probs=61.1
Q ss_pred ceeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCC-CCCEEecCCCcC
Q 041700 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLT-ELERMSLSENEL 74 (75)
Q Consensus 2 ~~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~-~L~~l~l~~n~~ 74 (75)
+++.+|+.+..+++|+.+++++|.+.+..|..+..+++|+.+++++|.+.+..|..+..+. .|+.+++++|.+
T Consensus 113 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp CEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred eCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 5667888888888888888888888877888888888888888888888877888888887 888888888765
No 19
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.49 E-value=3.6e-13 Score=66.33 Aligned_cols=66 Identities=33% Similarity=0.416 Sum_probs=33.2
Q ss_pred hccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.+..+++|+.+++++|.+....+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 112 (177)
T 2o6r_A 47 VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112 (177)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred HhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc
Confidence 344555555555555555543334445555555555555555533333344455555555555443
No 20
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=3.3e-13 Score=66.60 Aligned_cols=70 Identities=29% Similarity=0.477 Sum_probs=61.0
Q ss_pred eccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 4 ~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
+.+|..+. +.++.|++++|.+....|..+..+++|+.+++++|.+.+..+..|..+++|+.|++++|+++
T Consensus 25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence 45676553 88999999999999888889999999999999999999655566789999999999999874
No 21
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=3.6e-13 Score=66.20 Aligned_cols=69 Identities=30% Similarity=0.422 Sum_probs=60.8
Q ss_pred ccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 5 ~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
.+|..+ .+.++.|++++|.+....+..+..+++|+.+++++|.+.+..+..|..+++|+.|++++|+++
T Consensus 23 ~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 91 (170)
T 3g39_A 23 SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91 (170)
T ss_dssp SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC
Confidence 466655 388999999999999888888999999999999999999766677899999999999999874
No 22
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.47 E-value=4.5e-13 Score=69.06 Aligned_cols=69 Identities=28% Similarity=0.370 Sum_probs=36.3
Q ss_pred cChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 6 IPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 6 ~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.+..+..+++|+.|++++|.+....+..+..+++|+.+++++|.+....+..|..+++|+.|++++|.+
T Consensus 51 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 119 (251)
T 3m19_A 51 SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119 (251)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcC
Confidence 344455555555555555555544444455555555555555555543334445555555555555543
No 23
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.46 E-value=6.8e-13 Score=65.34 Aligned_cols=73 Identities=27% Similarity=0.290 Sum_probs=61.7
Q ss_pred eeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 3 HGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 3 ~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
++..+..+..+++|+.+++++|.++...+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|++.
T Consensus 65 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 65 QSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred eEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 3334456789999999999999999777777889999999999999999655556788999999999999863
No 24
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.46 E-value=2e-13 Score=65.60 Aligned_cols=69 Identities=23% Similarity=0.333 Sum_probs=44.1
Q ss_pred eccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 4 ~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+.+|..+..+++|+.+++++|.+... ..+..+++|+.+++++|.+.+..|..+..+++|+.+++++|.+
T Consensus 32 ~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i 100 (149)
T 2je0_A 32 GKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100 (149)
T ss_dssp TBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCC
T ss_pred hHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcC
Confidence 45666666677777777777766643 5556666666777666666644555555566666666666654
No 25
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.46 E-value=4.4e-13 Score=71.63 Aligned_cols=73 Identities=21% Similarity=0.176 Sum_probs=62.3
Q ss_pred ceeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 2 ~~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
+++..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+. |+.|++.+|++.
T Consensus 44 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 44 LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 3444557899999999999999999988888999999999999999999965555666655 999999999874
No 26
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=8.2e-13 Score=67.48 Aligned_cols=66 Identities=32% Similarity=0.504 Sum_probs=45.4
Q ss_pred hhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 8 SALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 8 ~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
..|..+++|+.|++++|.+....+..+..+++|+.+++++|.+. .+|..+..+++|+.|++++|++
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 82 GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCC
T ss_pred hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcC
Confidence 44566777777777777777555555666777777777777776 5666666667777777776665
No 27
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.45 E-value=2.5e-13 Score=77.48 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=62.7
Q ss_pred ceeccChhccCCCCCcEEEcccccCccc-----------------CChhhc--CCCCCcEEEccCcccccccCcccccCC
Q 041700 2 FHGGIPSALSNCTYLQILHLSYNDFSGA-----------------VPKDIG--NLSKLKELYLGRNRLQGEIPREFGNLT 62 (75)
Q Consensus 2 ~~~~~p~~~~~l~~l~~l~l~~~~~~~~-----------------~~~~~~--~~~~l~~l~l~~~~l~~~~p~~~~~l~ 62 (75)
++| +|+.++.+++|+.|++++|.+++. .|..+. .+++|+.+++++|.+.+.+|..+..++
T Consensus 195 l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 195 ITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred Ccc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence 456 888999999999999999998864 788877 899999999999988888898999999
Q ss_pred CCCEEecCCCc-C
Q 041700 63 ELERMSLSENE-L 74 (75)
Q Consensus 63 ~L~~l~l~~n~-~ 74 (75)
+|+.+++++|+ +
T Consensus 274 ~L~~L~Ls~n~~l 286 (636)
T 4eco_A 274 EMQLINVACNRGI 286 (636)
T ss_dssp SCCEEECTTCTTS
T ss_pred CCCEEECcCCCCC
Confidence 99999999886 5
No 28
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.44 E-value=9.5e-13 Score=67.86 Aligned_cols=66 Identities=36% Similarity=0.424 Sum_probs=33.5
Q ss_pred hccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.|..+++|+.|++++|.+....+..+..+++|+.+++++|.+.+..+..|..+++|+.|++++|.+
T Consensus 102 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence 344445555555555555433333444555555555555555533333455555555555555544
No 29
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=6.4e-13 Score=71.58 Aligned_cols=67 Identities=24% Similarity=0.290 Sum_probs=35.2
Q ss_pred hhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 8 SALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 8 ~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
..|..+++|+.|++++|.+....+..+..+.+|+.|++++|.+....|..|..+++|+.|++++|.+
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l 148 (361)
T 2xot_A 82 EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred hhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC
Confidence 3455555555555555555544444455555555555555555544444555555555555555544
No 30
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.43 E-value=1.4e-12 Score=65.61 Aligned_cols=64 Identities=34% Similarity=0.413 Sum_probs=28.1
Q ss_pred cCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 11 SNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 11 ~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
..+++|+.+++++|.+....+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+
T Consensus 73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc
Confidence 3444444444444444433333334444444444444444433333344444455555544443
No 31
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.43 E-value=1.4e-12 Score=65.59 Aligned_cols=66 Identities=29% Similarity=0.330 Sum_probs=34.0
Q ss_pred hccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.+..+++|+.+++++|.+....+..+..+++|+++++++|.+.+..+..+..+++|+.+++++|.+
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 112 (208)
T 2o6s_A 47 VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL 112 (208)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcC
Confidence 344555555555555555544334445555555555555555533333445555555555555544
No 32
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.43 E-value=6e-13 Score=77.07 Aligned_cols=69 Identities=32% Similarity=0.604 Sum_probs=56.1
Q ss_pred ccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 5 ~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
.+|..+..+++|+.|++++|.++ ..|..+..+.+|+.|++++|.+. .+|..|..+++|+.|++++|+++
T Consensus 261 ~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 261 ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCC
T ss_pred ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccC
Confidence 67777888888888888888887 66777888888888888888887 67777888888888888888763
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.42 E-value=8.8e-13 Score=72.34 Aligned_cols=61 Identities=30% Similarity=0.303 Sum_probs=22.0
Q ss_pred CCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCC
Q 041700 12 NCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSEN 72 (75)
Q Consensus 12 ~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n 72 (75)
.+++|+.+++++|.+....+..+..+++|+.+++++|.+.+..|..+..+++|+.+++++|
T Consensus 321 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381 (455)
T ss_dssp TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC
Confidence 3333333333333333333333333333333333333333222333333333333333333
No 34
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=3.4e-13 Score=65.89 Aligned_cols=68 Identities=28% Similarity=0.363 Sum_probs=32.7
Q ss_pred ccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 5 ~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.+|..+..+++|+.+++++|.+... ..+..+++|+.+++++|.+.+..|..+..+++|+.+++++|.+
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 107 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSC
T ss_pred hHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCcc
Confidence 4444445555555555555554432 3344444555555555554433444444444455555544443
No 35
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.41 E-value=9.5e-13 Score=74.33 Aligned_cols=72 Identities=14% Similarity=0.079 Sum_probs=51.0
Q ss_pred eeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 3 HGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 3 ~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
++..|..|..+++|+.+++++|.+....|..+..+++|+.+++++|.+.+..|..|..+++|+++++++|.+
T Consensus 46 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i 117 (606)
T 3t6q_A 46 PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117 (606)
T ss_dssp SEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCC
T ss_pred CcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCc
Confidence 344466677777777777777777766677777777777777777777666666777777777777776655
No 36
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.41 E-value=1.4e-12 Score=71.87 Aligned_cols=73 Identities=21% Similarity=0.196 Sum_probs=56.5
Q ss_pred ceeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 2 ~~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+++..|+.|..+++|+.|++++|.+....+..+..+++|+.+++++|.+....+..|..+++|+.|++++|.+
T Consensus 87 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 159 (452)
T 3zyi_A 87 IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI 159 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCC
T ss_pred CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCc
Confidence 3445567778888888888888888877777788888888888888888755556677788888888888765
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.41 E-value=1.3e-12 Score=71.70 Aligned_cols=74 Identities=28% Similarity=0.335 Sum_probs=65.7
Q ss_pred ceeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 2 ~~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
+++..|..+..+++|+.+++++|.+....|..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|+++
T Consensus 335 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 34555778899999999999999999888899999999999999999999666667899999999999999874
No 38
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.41 E-value=2.3e-12 Score=67.10 Aligned_cols=70 Identities=29% Similarity=0.273 Sum_probs=45.3
Q ss_pred ccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 5 ~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
..+..+..+++|+.+++++|.+....+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|++
T Consensus 100 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc
Confidence 3344456677777777777777655555566667777777777766654445556666677777766655
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.41 E-value=1.3e-12 Score=73.72 Aligned_cols=71 Identities=31% Similarity=0.292 Sum_probs=42.7
Q ss_pred eccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 4 ~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+..+..|..+++|+.+++++|.+....|..+..+++|+.+++++|.+.+..|..|.++++|+++++++|.+
T Consensus 46 ~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 116 (606)
T 3vq2_A 46 ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116 (606)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCC
T ss_pred EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcc
Confidence 33344566666666666666666655555566666666666666666544456666666666666666554
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.40 E-value=9.1e-13 Score=73.67 Aligned_cols=72 Identities=25% Similarity=0.257 Sum_probs=50.3
Q ss_pred eeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 3 HGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 3 ~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
++..|..|..+++|+++++++|.+....+..+..+++|+.+++++|.+.+..|..|+.+++|+++++++|.+
T Consensus 39 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 110 (549)
T 2z81_A 39 TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110 (549)
T ss_dssp CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCC
T ss_pred CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcc
Confidence 444566677777777777777777766666777777777777777777755555577777777777777765
No 41
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.39 E-value=3.4e-12 Score=67.17 Aligned_cols=67 Identities=30% Similarity=0.300 Sum_probs=30.1
Q ss_pred hhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 8 SALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 8 ~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
..|..+++|+.|++++|.+....+..+..+++|+.+++++|.+....+..|..+++|+.+++++|++
T Consensus 118 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred HHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence 3344444444444444444433333344444444555544444432223334444555555544443
No 42
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.39 E-value=2.2e-12 Score=69.50 Aligned_cols=73 Identities=23% Similarity=0.147 Sum_probs=59.5
Q ss_pred eeccChhcc-CCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 3 HGGIPSALS-NCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 3 ~~~~p~~~~-~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
++..+..+. .+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.++
T Consensus 52 ~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 125 (361)
T 2xot_A 52 SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125 (361)
T ss_dssp CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc
Confidence 333445565 7889999999999998777778888999999999999988666667888999999999998763
No 43
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.38 E-value=2.7e-12 Score=72.79 Aligned_cols=68 Identities=32% Similarity=0.456 Sum_probs=49.3
Q ss_pred ccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCccccccc-CcccccCCCCCEEecCCCcC
Q 041700 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEI-PREFGNLTELERMSLSENEL 74 (75)
Q Consensus 5 ~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~-p~~~~~l~~L~~l~l~~n~~ 74 (75)
.+|..+..+++|+.|++++|.+++ .| .+..+++|+.|++++|.+.+.. |..+..+++|+.|++++|++
T Consensus 477 ~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 477 ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 567777777777777777777764 44 6677777777777777777544 77777777777777777765
No 44
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.38 E-value=4.5e-12 Score=65.94 Aligned_cols=62 Identities=34% Similarity=0.435 Sum_probs=24.1
Q ss_pred cCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCC
Q 041700 11 SNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSEN 72 (75)
Q Consensus 11 ~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n 72 (75)
..+++|+.+++++|.+....+..+..+++|+.+++++|.+....+..|..+++|+.+++++|
T Consensus 130 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 130 DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence 33444444444444443322223333444444444444443222223333444444444443
No 45
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=2.7e-12 Score=64.19 Aligned_cols=67 Identities=22% Similarity=0.330 Sum_probs=35.0
Q ss_pred cChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcc-cccccCcccccCCCCCEEecCCCcC
Q 041700 6 IPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNR-LQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 6 ~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~-l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.|..+..+++|+.+++++|.+....+..+..+++|+.+++++|. +. ..| .+..+++|+.+++++|.+
T Consensus 104 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCC
T ss_pred cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCC
Confidence 34455555555555555555554445555555555555555554 33 333 345555555555555544
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.38 E-value=3.9e-12 Score=67.62 Aligned_cols=73 Identities=23% Similarity=0.339 Sum_probs=58.5
Q ss_pred ceeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 2 ~~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
+++..|..+..+++|+.+++++|.+....+..+..+++|+.+++++|.+. .+|..+..+++|+.+++++|+++
T Consensus 204 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence 34445677888888888888888888777777888888888888888887 67778888888888888888763
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.37 E-value=5e-12 Score=67.48 Aligned_cols=68 Identities=24% Similarity=0.231 Sum_probs=34.0
Q ss_pred cChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCc
Q 041700 6 IPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73 (75)
Q Consensus 6 ~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~ 73 (75)
+|+.+..+++|+.+++++|.+.+..|..+..+++|+.+++++|.+.+..|..+..+++|+.+++++|+
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 34444445555555555544444444444555555555555544444455555555555555555543
No 48
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.37 E-value=3.8e-12 Score=67.01 Aligned_cols=71 Identities=28% Similarity=0.419 Sum_probs=57.8
Q ss_pred ccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 5 ~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
.+|..+..+++|+.|++++|.++...+..+..+++|+.+++++|.+....+..|..+++|+.|++++|+++
T Consensus 91 ~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 46677778888888888888888666677888888999999888888666666788888999999888763
No 49
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.37 E-value=1.7e-12 Score=76.47 Aligned_cols=71 Identities=23% Similarity=0.289 Sum_probs=61.0
Q ss_pred ceeccChhccCCCCCcEEEcccccCcc-----------------cCChhhc--CCCCCcEEEccCcccccccCcccccCC
Q 041700 2 FHGGIPSALSNCTYLQILHLSYNDFSG-----------------AVPKDIG--NLSKLKELYLGRNRLQGEIPREFGNLT 62 (75)
Q Consensus 2 ~~~~~p~~~~~l~~l~~l~l~~~~~~~-----------------~~~~~~~--~~~~l~~l~l~~~~l~~~~p~~~~~l~ 62 (75)
+++ +|..+..+++|+.|++++|.+++ ..|..+. .+++|+.+++++|.+.+.+|..+..++
T Consensus 437 L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~ 515 (876)
T 4ecn_A 437 ITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515 (876)
T ss_dssp EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS
T ss_pred ccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC
Confidence 345 88889999999999999999886 2777766 889999999999988888898899999
Q ss_pred CCCEEecCCCc
Q 041700 63 ELERMSLSENE 73 (75)
Q Consensus 63 ~L~~l~l~~n~ 73 (75)
+|+.|++++|+
T Consensus 516 ~L~~L~Ls~N~ 526 (876)
T 4ecn_A 516 ELQSLNIACNR 526 (876)
T ss_dssp SCCEEECTTCT
T ss_pred CCCEEECcCCC
Confidence 99999999886
No 50
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.37 E-value=3.7e-12 Score=70.37 Aligned_cols=71 Identities=28% Similarity=0.305 Sum_probs=43.5
Q ss_pred eccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 4 ~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+..|..|..+++|+.|++++|.+....|..+..+++|+.+++++|.+....+..|..+++|+.|++++|.+
T Consensus 46 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i 116 (477)
T 2id5_A 46 TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116 (477)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCC
T ss_pred eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcc
Confidence 33455666666666666666666655566666666666666666666643334456666666666666654
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.36 E-value=4.6e-12 Score=69.63 Aligned_cols=72 Identities=25% Similarity=0.222 Sum_probs=53.7
Q ss_pred eeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 3 HGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 3 ~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.+..+..|..+++|+.|++++|.+....+..+..+++|+.+++++|.+....+..|..+++|+.|++++|.+
T Consensus 77 ~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i 148 (440)
T 3zyj_A 77 QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148 (440)
T ss_dssp CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCC
T ss_pred CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcc
Confidence 334456777788888888888888777777777788888888888887755555677778888888877765
No 52
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.36 E-value=4.4e-12 Score=71.66 Aligned_cols=68 Identities=21% Similarity=0.222 Sum_probs=32.1
Q ss_pred cChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCc
Q 041700 6 IPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73 (75)
Q Consensus 6 ~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~ 73 (75)
.|..|..+++|+.+++++|.+....|..+..+++|+++++++|.+.+..+..++.+++|+++++++|.
T Consensus 72 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 139 (606)
T 3vq2_A 72 EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC
T ss_pred CHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc
Confidence 34445555555555555555554444445555555555555544443332334444444444444443
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.36 E-value=4.8e-12 Score=66.14 Aligned_cols=60 Identities=28% Similarity=0.324 Sum_probs=22.2
Q ss_pred CCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCC
Q 041700 13 CTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSEN 72 (75)
Q Consensus 13 l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n 72 (75)
+++|+.+++++|.+....+..+..+++|+.+++++|.+.+..|..+..+++|+.+++++|
T Consensus 152 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 333333333333333222223333333333333333333333333333334444444433
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.36 E-value=4.4e-12 Score=66.79 Aligned_cols=69 Identities=22% Similarity=0.308 Sum_probs=34.2
Q ss_pred cChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 6 IPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 6 ~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+|..+..+++|+.+++++|.+....+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|++
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 344455555555555555555544444455555555555555555433333444444555555554443
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.36 E-value=7e-12 Score=65.50 Aligned_cols=62 Identities=29% Similarity=0.326 Sum_probs=23.3
Q ss_pred cCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCC
Q 041700 11 SNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSEN 72 (75)
Q Consensus 11 ~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n 72 (75)
..+++|+.+++++|.+....+..+..+++|+.+++++|.+....+..+..+++|+.+++++|
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC
Confidence 33333333333333333333333333333444444433333222223333444444444443
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.35 E-value=3.8e-12 Score=67.03 Aligned_cols=71 Identities=23% Similarity=0.299 Sum_probs=43.6
Q ss_pred eccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCC-CCCEEecCCCcC
Q 041700 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLT-ELERMSLSENEL 74 (75)
Q Consensus 4 ~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~-~L~~l~l~~n~~ 74 (75)
+..|..+..+++|+.+++++|.+....+..+..+++|+.+++++|.+.+..|..+..++ +|+.+++++|++
T Consensus 189 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 33455566666666666666666655555566666666666666666655555666553 666666666654
No 57
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.35 E-value=5.6e-12 Score=65.62 Aligned_cols=65 Identities=25% Similarity=0.290 Sum_probs=34.5
Q ss_pred hccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCc
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~ 73 (75)
.+..+++|+.+++++|.+....+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 111 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC
Confidence 45555555555555555554444455555555555555555554444445555555555555444
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.35 E-value=2.3e-12 Score=68.19 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=53.5
Q ss_pred ceeccChhc--cCCCCCcEEEcccccCcccCChhhcCC-----CCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 2 FHGGIPSAL--SNCTYLQILHLSYNDFSGAVPKDIGNL-----SKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 2 ~~~~~p~~~--~~l~~l~~l~l~~~~~~~~~~~~~~~~-----~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+++.+|..+ ..+++|+.+++++|.+.+. |..+..+ ++|+++++++|.+.+..|..+..+++|+.+++++|++
T Consensus 107 l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 107 VTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp CBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred ccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc
Confidence 455667765 6788888888888888755 6656555 7788888888888766667778888888888888764
No 59
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.35 E-value=4.2e-12 Score=67.60 Aligned_cols=71 Identities=24% Similarity=0.257 Sum_probs=55.1
Q ss_pred eccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 4 ~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
+..+..+..+++|+.+++++|.+....+..+..+++|+.+++++|.+. .+|..+..+++|+.+++++|+++
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence 344566777888888888888888666667788888888888888887 67777888888888888888763
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.35 E-value=7.2e-12 Score=66.86 Aligned_cols=73 Identities=18% Similarity=0.111 Sum_probs=67.3
Q ss_pred ceeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 2 ~~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+.+.+|..+..+++|+.+++++|.+.+..|..+..+++|+.+++++|.+.+.+|..+..+++++.+++..+.+
T Consensus 241 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 5678899999999999999999998889999999999999999999999889999999999999999987654
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.34 E-value=1.1e-11 Score=64.46 Aligned_cols=65 Identities=26% Similarity=0.338 Sum_probs=30.0
Q ss_pred hccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCc
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~ 73 (75)
.|..+++|+.+++++|.+....+..+..+++|+.+++++|.+....+..|..+++|+.|++++|.
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 120 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ 120 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC
T ss_pred HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc
Confidence 44455555555555555543333334444455555555544443333334444444444444443
No 62
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.34 E-value=8.2e-12 Score=70.87 Aligned_cols=68 Identities=31% Similarity=0.382 Sum_probs=32.2
Q ss_pred ChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 7 PSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 7 p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
|..|..+++|+.|++++|.+....+..+..+++|+.+++++|.+.+..|..|..+++|+.|++++|.+
T Consensus 116 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC
T ss_pred HHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC
Confidence 33344444555555555544433333344445555555555555444444455555555555555443
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.34 E-value=4.8e-12 Score=70.93 Aligned_cols=70 Identities=26% Similarity=0.353 Sum_probs=52.4
Q ss_pred ccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 5 ~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.+|..+..+++|+.+++++|.+....|..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|++
T Consensus 461 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 4666777777777777777777766677777777788888887777766666677777888888877765
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.33 E-value=5.1e-12 Score=67.74 Aligned_cols=67 Identities=28% Similarity=0.320 Sum_probs=41.2
Q ss_pred hhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 8 SALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 8 ~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
..+..+++|+.+++++|.+....+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|++
T Consensus 70 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 136 (353)
T 2z80_A 70 SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136 (353)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCC
T ss_pred HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCC
Confidence 3566666666666666666655555666666666666666666633333356666666666666654
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.33 E-value=6.9e-12 Score=70.30 Aligned_cols=70 Identities=24% Similarity=0.239 Sum_probs=42.9
Q ss_pred ccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 5 ~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
..+..|..+++|+.+++++|.+....+..+..+++|+++++++|.+....|..|.++++|+++++++|.+
T Consensus 43 ~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 112 (570)
T 2z63_A 43 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112 (570)
T ss_dssp ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccc
Confidence 3344566666666666666666655555666666666666666666544445566666666666655543
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.33 E-value=6.1e-12 Score=69.13 Aligned_cols=71 Identities=25% Similarity=0.241 Sum_probs=44.1
Q ss_pred eccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 4 ~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+..|..|..+++|+.+++++|.+....+..+..+++|+.+++++|.+....+..|..+++|+.+++++|++
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 33455566666666666666666655556666666666666666666654445566666666666666654
No 67
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.33 E-value=1.1e-11 Score=70.40 Aligned_cols=72 Identities=26% Similarity=0.259 Sum_probs=46.7
Q ss_pred eeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 3 HGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 3 ~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
++..|..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+
T Consensus 88 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l 159 (597)
T 3oja_B 88 EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159 (597)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence 334445666677777777777777665566666677777777777776644344456677777777777655
No 68
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.32 E-value=8e-12 Score=70.61 Aligned_cols=73 Identities=16% Similarity=0.106 Sum_probs=56.2
Q ss_pred ceeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 2 ~~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+.+..|+.|..+++|+.+++++|.+....|..+..+++|+.+++++|.+.+..+..+..+++|+++++++|.+
T Consensus 69 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l 141 (606)
T 3t6q_A 69 IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCC
T ss_pred cceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcc
Confidence 3455677788888888888888888777777788888888888888887755566677777788888877765
No 69
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.32 E-value=8.2e-12 Score=69.02 Aligned_cols=72 Identities=24% Similarity=0.274 Sum_probs=50.5
Q ss_pred eeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 3 HGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 3 ~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
++..|..|..+++|+.|++++|.+....+..+..+++|+.+++++|.+....+..|..+++|+.|++++|.+
T Consensus 69 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l 140 (477)
T 2id5_A 69 SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140 (477)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTC
T ss_pred CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcc
Confidence 444567777777888888877777755555567777777777777777666666667777777777776654
No 70
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.32 E-value=1.4e-11 Score=66.70 Aligned_cols=66 Identities=29% Similarity=0.335 Sum_probs=29.6
Q ss_pred hhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCc
Q 041700 8 SALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73 (75)
Q Consensus 8 ~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~ 73 (75)
..+..+++|+.+++++|.+....+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.
T Consensus 111 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred HHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc
Confidence 334444444444444444442222223444444444444444443334444444455555554444
No 71
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.32 E-value=7.2e-12 Score=69.05 Aligned_cols=71 Identities=23% Similarity=0.196 Sum_probs=45.1
Q ss_pred eccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 4 ~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+..|..|..+++|+.+++++|.+....+..+..+++|+.+++++|.+....+..+..+++|+.+++++|++
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 34455666666666666666666666666666666666666666666644445566666677777766654
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.32 E-value=1.4e-11 Score=64.14 Aligned_cols=68 Identities=35% Similarity=0.449 Sum_probs=39.2
Q ss_pred ChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccc-cCcccccCCCCCEEecCCCcC
Q 041700 7 PSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGE-IPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 7 p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~-~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+..+..+++|+.+++++|.+....+..+..+++|+.+++++|.+.+. .|..+..+++|+.+++++|.+
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 34455555555555555555544444455566666666666666532 456666666666666666654
No 73
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.32 E-value=8e-12 Score=62.47 Aligned_cols=66 Identities=18% Similarity=0.264 Sum_probs=44.9
Q ss_pred hhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCc
Q 041700 8 SALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73 (75)
Q Consensus 8 ~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~ 73 (75)
+.+..+++|+.+++++|.+....+..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.
T Consensus 82 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 82 NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 355666777777777777665556666667777777777777765556666777777777777765
No 74
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=4.4e-12 Score=60.88 Aligned_cols=67 Identities=24% Similarity=0.287 Sum_probs=56.3
Q ss_pred hhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccc-cCcccccCCCCCEEecCCCcC
Q 041700 8 SALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGE-IPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 8 ~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~-~p~~~~~l~~L~~l~l~~n~~ 74 (75)
..+..+++|+.+++++|.+....|..+..+++|+.+++++|.+.+. .+..+..+++|+.+++++|++
T Consensus 58 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 58 ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 5677889999999999999866777777789999999999998842 337788899999999999876
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.31 E-value=3.5e-12 Score=65.29 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=44.8
Q ss_pred ChhccCCCCCcEEEccccc-CcccCChhhcCCCCCcEEEccC-cccccccCcccccCCCCCEEecCCCcC
Q 041700 7 PSALSNCTYLQILHLSYND-FSGAVPKDIGNLSKLKELYLGR-NRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 7 p~~~~~l~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~l~l~~-~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+..|..+++|+.+++++|. +....+..+..+++|+.+++++ |.+....+..|.++++|+.+++++|.+
T Consensus 48 ~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l 117 (239)
T 2xwt_C 48 SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL 117 (239)
T ss_dssp TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECC
T ss_pred HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCC
Confidence 3456667777777777775 6655555666777777777776 666644445666677777777766654
No 76
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=9.4e-12 Score=60.75 Aligned_cols=66 Identities=26% Similarity=0.280 Sum_probs=35.3
Q ss_pred hccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccc-cCcccccCCCCCEEecCCCcC
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGE-IPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~-~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.+..+++|+.+++++|.+....|..+..+++|+.+++++|.+.+. .+..+..+++|+.+++++|++
T Consensus 66 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l 132 (168)
T 2ell_A 66 NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132 (168)
T ss_dssp SCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG
T ss_pred hhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcC
Confidence 445555566666666655544444444455566666665555522 114455555555565555544
No 77
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.30 E-value=2e-11 Score=66.16 Aligned_cols=68 Identities=28% Similarity=0.317 Sum_probs=41.3
Q ss_pred ChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 7 PSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 7 p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+..+..+++|+.+++++|.+....+..+..+++|+.+++++|.+....+..|..+++|+++++++|.+
T Consensus 86 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 153 (390)
T 3o6n_A 86 TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153 (390)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred hhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc
Confidence 34556666666666666666655555566666666666666666633223346666666666666654
No 78
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.30 E-value=1.4e-11 Score=69.93 Aligned_cols=67 Identities=28% Similarity=0.367 Sum_probs=60.5
Q ss_pred ccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 5 ~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
.+|. +..+++|+.|++++|.+. ..|..+..+++|+.|++++|.+++ +| .+..+++|+.|++++|.++
T Consensus 455 ~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~ 521 (567)
T 1dce_A 455 VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQ 521 (567)
T ss_dssp SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCC
T ss_pred CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCC
Confidence 3676 899999999999999998 778899999999999999999995 67 8999999999999999874
No 79
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.30 E-value=1.2e-11 Score=70.74 Aligned_cols=66 Identities=27% Similarity=0.305 Sum_probs=27.5
Q ss_pred ChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCC
Q 041700 7 PSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSEN 72 (75)
Q Consensus 7 p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n 72 (75)
|+.+..+++|+.+++++|.+....+..+..+++|+++++++|.+.+..|..|..+++|+++++++|
T Consensus 66 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 131 (680)
T 1ziw_A 66 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131 (680)
T ss_dssp TTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS
T ss_pred HHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC
Confidence 333444444444444444444222223444444444444444444333333444444444444444
No 80
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=9.1e-12 Score=61.32 Aligned_cols=65 Identities=22% Similarity=0.215 Sum_probs=39.6
Q ss_pred hccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCc--ccccCCCCCEEecCCCcC
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPR--EFGNLTELERMSLSENEL 74 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~--~~~~l~~L~~l~l~~n~~ 74 (75)
.+..+++|+.+++++|.+....+..+..+++|+.+++++|.+. ..|. .+..+++|+.+++++|++
T Consensus 59 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 59 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGG
T ss_pred ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCC
Confidence 4555666666666666666443344466666666666666665 3444 566666666666666654
No 81
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=1.3e-11 Score=71.59 Aligned_cols=69 Identities=30% Similarity=0.492 Sum_probs=57.1
Q ss_pred ccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 5 ~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
.+|..+..+++|+.|++++|.+. ..|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++
T Consensus 238 ~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 238 NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306 (727)
T ss_dssp CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC
T ss_pred CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC
Confidence 56777778888888888888887 77778888888888888888888 67888888888888888888763
No 82
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.27 E-value=4.2e-12 Score=72.55 Aligned_cols=69 Identities=16% Similarity=0.253 Sum_probs=46.4
Q ss_pred cChhcc--CCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcc-ccc-ccCcccccC------CCCCEEecCCCcC
Q 041700 6 IPSALS--NCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNR-LQG-EIPREFGNL------TELERMSLSENEL 74 (75)
Q Consensus 6 ~p~~~~--~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~-l~~-~~p~~~~~l------~~L~~l~l~~n~~ 74 (75)
+|+.+. .+++|+.+++++|.+.+..|..+..+++|+.+++++|. +++ .+|..+..+ ++|+.+++++|.+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 677766 77777777777777666677777777777777777776 665 556555544 5666666666654
No 83
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.27 E-value=2e-11 Score=68.75 Aligned_cols=42 Identities=26% Similarity=0.167 Sum_probs=17.7
Q ss_pred hccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCccc
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRL 50 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l 50 (75)
.|..+++|+.|++++|.+....|..+..+++|+++++++|.+
T Consensus 71 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 71 DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112 (562)
T ss_dssp GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC
Confidence 344444444444444444433334444444444444444433
No 84
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.26 E-value=1.3e-11 Score=72.28 Aligned_cols=68 Identities=31% Similarity=0.373 Sum_probs=34.2
Q ss_pred ChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcc--cccCCCCCEEecCCCcC
Q 041700 7 PSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPRE--FGNLTELERMSLSENEL 74 (75)
Q Consensus 7 p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~--~~~l~~L~~l~l~~n~~ 74 (75)
|..|..+++|+.|++++|.+....|..+..+++|+.|++++|.+.+..|.. +..+++|++|++++|.+
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l 135 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCC
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcc
Confidence 444555555555555555555444555555555555555555554333332 44455555555555443
No 85
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.25 E-value=3.5e-11 Score=67.77 Aligned_cols=69 Identities=33% Similarity=0.342 Sum_probs=61.4
Q ss_pred ccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 5 ~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
.+|..+. ++++.+++++|.+....+..+..+++|+.+++++|.+.+..|..|.++++|++|++++|.++
T Consensus 45 ~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 113 (562)
T 3a79_B 45 HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113 (562)
T ss_dssp SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC
Confidence 3676553 89999999999999777789999999999999999999777889999999999999999874
No 86
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.25 E-value=2.2e-11 Score=67.89 Aligned_cols=61 Identities=38% Similarity=0.337 Sum_probs=34.5
Q ss_pred CCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 14 TYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 14 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
++++.+++++|.+....+..+..+++|+.+++++|.+.+..|..|..+++|++|++++|.+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 5555556655555544445555555555666555555544455555555555555555554
No 87
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.25 E-value=2.9e-11 Score=69.17 Aligned_cols=72 Identities=24% Similarity=0.275 Sum_probs=57.8
Q ss_pred eeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 3 HGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 3 ~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
++..+..|..+++|+.+++++|.+....|..+..+++|+.+++++|.+....+..|..+++|+++++++|.+
T Consensus 38 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 109 (680)
T 1ziw_A 38 RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109 (680)
T ss_dssp CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCcc
Confidence 344455688888899999998888877788888888999999998888854445688889999999988865
No 88
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.24 E-value=1.5e-11 Score=68.58 Aligned_cols=63 Identities=25% Similarity=0.199 Sum_probs=30.5
Q ss_pred hhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCc
Q 041700 8 SALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73 (75)
Q Consensus 8 ~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~ 73 (75)
+.|..+++|+.+++++|.+....|..+..+++|+++++++|.+. .+|.. .+++|++|++++|.
T Consensus 39 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~ 101 (520)
T 2z7x_B 39 SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNA 101 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSC
T ss_pred hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCc
Confidence 44555555555555555555444455555555555555555444 23322 34444444444443
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.22 E-value=4e-11 Score=63.39 Aligned_cols=73 Identities=16% Similarity=0.122 Sum_probs=47.5
Q ss_pred ceeccChhc--cCCCCCcEEEcccccCcccCC----hhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 2 FHGGIPSAL--SNCTYLQILHLSYNDFSGAVP----KDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 2 ~~~~~p~~~--~~l~~l~~l~l~~~~~~~~~~----~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+++..|..+ ..+++|+.+++++|.+....+ ..+..+++|+.+++++|.+.+..+..+..+++|++|++++|++
T Consensus 103 l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 181 (310)
T 4glp_A 103 ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPG 181 (310)
T ss_dssp CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTT
T ss_pred eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCC
Confidence 345556665 667777777777777764433 2234566777777777777655566677777777777777754
No 90
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.21 E-value=5.5e-11 Score=69.71 Aligned_cols=69 Identities=26% Similarity=0.332 Sum_probs=34.9
Q ss_pred cChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 6 IPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 6 ~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.|..|..+++|+.|++++|.+....+..+..+++|+.+++++|.+....+..|..+++|+.|++++|.+
T Consensus 306 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp CTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred ChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence 344444555555555555555444444455555555555555555444344455555555555555543
No 91
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.20 E-value=4.9e-11 Score=66.77 Aligned_cols=72 Identities=31% Similarity=0.273 Sum_probs=59.4
Q ss_pred ceeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCccccc-ccCcccccCCCCCEEecCCCc
Q 041700 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQG-EIPREFGNLTELERMSLSENE 73 (75)
Q Consensus 2 ~~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~-~~p~~~~~l~~L~~l~l~~n~ 73 (75)
+++..|+.|..+++|+.+++++|.+....+..+..+++|+++++++|.+.+ ..|..+..+++|+.+++++|.
T Consensus 62 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 62 INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCc
Confidence 455567788899999999999999987777778899999999999998875 346678888888888888876
No 92
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=7.3e-12 Score=73.89 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=42.1
Q ss_pred ccChhcc--CCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcc-ccc-ccCcccccCC-------CCCEEecCCCc
Q 041700 5 GIPSALS--NCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNR-LQG-EIPREFGNLT-------ELERMSLSENE 73 (75)
Q Consensus 5 ~~p~~~~--~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~-l~~-~~p~~~~~l~-------~L~~l~l~~n~ 73 (75)
.+|+.++ .+++|+.|++++|.+.+..|..+..+++|+.+++++|. +++ .+|..+..+. +|+.|++++|.
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 3666655 66666666666666666666666666666666666665 554 4554444333 55555555554
Q ss_pred C
Q 041700 74 L 74 (75)
Q Consensus 74 ~ 74 (75)
+
T Consensus 560 L 560 (876)
T 4ecn_A 560 L 560 (876)
T ss_dssp C
T ss_pred C
Confidence 4
No 93
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.19 E-value=1.2e-10 Score=62.03 Aligned_cols=42 Identities=31% Similarity=0.397 Sum_probs=18.9
Q ss_pred hccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCccc
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRL 50 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l 50 (75)
.+..+++|+.+++++|.+....|..+..+++|+.+++++|.+
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 114 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC
T ss_pred HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC
Confidence 444444444444444444433344444444444444444443
No 94
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.18 E-value=2e-10 Score=61.06 Aligned_cols=43 Identities=35% Similarity=0.488 Sum_probs=19.2
Q ss_pred hccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccc
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQ 51 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~ 51 (75)
.+..+++|+.+++++|.+....|..+..+++|+.+++++|.+.
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC
Confidence 3444444444444444444333444444444444444444433
No 95
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.17 E-value=1e-10 Score=57.56 Aligned_cols=60 Identities=22% Similarity=0.239 Sum_probs=47.4
Q ss_pred CCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 14 TYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 14 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
++|+.+++++|.+... ..+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.++
T Consensus 42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 101 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101 (176)
T ss_dssp TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC
T ss_pred CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC
Confidence 4888888888888754 56778888999999998888544455588889999999988763
No 96
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.17 E-value=1.1e-10 Score=62.53 Aligned_cols=70 Identities=26% Similarity=0.236 Sum_probs=54.9
Q ss_pred ceeccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCc--ccccCCCCCEEecCCC
Q 041700 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPR--EFGNLTELERMSLSEN 72 (75)
Q Consensus 2 ~~~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~--~~~~l~~L~~l~l~~n 72 (75)
+++..|..+..+++|+.+++++|.+....+..+..+++|+.+++++|.+. .+|. .+..+++|+.+++++|
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEES
T ss_pred cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCC
Confidence 34455677888899999999999888555555888889999999988887 4444 6788888888888877
No 97
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.15 E-value=3.5e-11 Score=63.74 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=32.5
Q ss_pred CCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccc--cCccc--ccCCCCCEEecCCCcC
Q 041700 14 TYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGE--IPREF--GNLTELERMSLSENEL 74 (75)
Q Consensus 14 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~--~p~~~--~~l~~L~~l~l~~n~~ 74 (75)
++|+.+++++|.+....+..+..+++|+.+++++|.+.+. .+..+ ..+++|+.+++++|.+
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l 213 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC
Confidence 5566666666666555545555566666666665554322 12222 4455555555555544
No 98
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.15 E-value=3.2e-12 Score=63.95 Aligned_cols=71 Identities=30% Similarity=0.421 Sum_probs=57.5
Q ss_pred ceeccCh------hccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 2 FHGGIPS------ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 2 ~~~~~p~------~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
++|.+|. .+..+++|+.+++++|.+.. .| .+..+++|+.+++++|.+. .+|..+..+++|+.+++++|.++
T Consensus 30 l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 30 LHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA 106 (198)
T ss_dssp CCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC
T ss_pred eccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC
Confidence 3455555 88889999999999999885 55 7888899999999999988 67777777788888888888763
No 99
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.12 E-value=1.6e-10 Score=59.08 Aligned_cols=64 Identities=14% Similarity=0.229 Sum_probs=37.7
Q ss_pred ChhccCCCCCcEEEccc-ccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCC---EEecCCC
Q 041700 7 PSALSNCTYLQILHLSY-NDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELE---RMSLSEN 72 (75)
Q Consensus 7 p~~~~~l~~l~~l~l~~-~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~---~l~l~~n 72 (75)
+..|..+++|+.+++++ |.+....+..+..+++|+.+++++|.+.+ +|. +..+.+|+ .+++++|
T Consensus 73 ~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 73 SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESC
T ss_pred HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCC
Confidence 34566677777777776 66665555566666667666666665552 343 44444444 4555444
No 100
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.12 E-value=1.8e-10 Score=61.46 Aligned_cols=63 Identities=24% Similarity=0.449 Sum_probs=32.8
Q ss_pred ccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 10 ~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+..+++|+.+++++|.+....+..+..+++|+.+++++|.+.+..| +..+++|+.+++++|.+
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 4445555555555555554444555555555555555555553322 45555555555555554
No 101
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.07 E-value=4.5e-10 Score=62.73 Aligned_cols=37 Identities=35% Similarity=0.465 Sum_probs=16.6
Q ss_pred CCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 37 LSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 37 ~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+++|+.+++++|.+.+ .|..+..+++|+.+++++|.+
T Consensus 190 l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCC
T ss_pred CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcC
Confidence 3444444444444442 223344444555555555443
No 102
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.07 E-value=3.1e-10 Score=63.39 Aligned_cols=69 Identities=19% Similarity=0.125 Sum_probs=41.4
Q ss_pred eccChhccCCCCCcEEEcccccCcccCChhhc-CCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 4 GGIPSALSNCTYLQILHLSYNDFSGAVPKDIG-NLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 4 ~~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~-~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+..|..+..+++|+.|++++|.+.+..|..+. .+++|+.+++++|.+.+. | ....+++|+.|++++|.+
T Consensus 134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l 203 (487)
T 3oja_A 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKL 203 (487)
T ss_dssp SGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCC
T ss_pred CCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCC
Confidence 34455556666666666666666655555554 466666666666666633 2 223466677777776665
No 103
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.05 E-value=6.6e-11 Score=62.78 Aligned_cols=64 Identities=25% Similarity=0.298 Sum_probs=45.9
Q ss_pred hccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.+..+++|+.+++++|.+....+..+..+++|+.+++++|.+.+..+ +..+++|+.+++++|.+
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 33455677888888888776666777778888888888887764333 67777777777777764
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.04 E-value=1.3e-10 Score=62.67 Aligned_cols=73 Identities=21% Similarity=0.164 Sum_probs=41.6
Q ss_pred ceeccChhccCCCCCcEEEcccccCcccCC----hhhcCCC-CCcEEEccCcccccccCcccccC-----CCCCEEecCC
Q 041700 2 FHGGIPSALSNCTYLQILHLSYNDFSGAVP----KDIGNLS-KLKELYLGRNRLQGEIPREFGNL-----TELERMSLSE 71 (75)
Q Consensus 2 ~~~~~p~~~~~l~~l~~l~l~~~~~~~~~~----~~~~~~~-~l~~l~l~~~~l~~~~p~~~~~l-----~~L~~l~l~~ 71 (75)
++|.+|..+...++|+.+++++|.+....+ ..+..++ +|+.+++++|.+....+..+..+ ++|+.|++++
T Consensus 10 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 10 GSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp TCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred chHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcC
Confidence 344455544445556666666666665444 4555555 56666666666654444444443 5666666666
Q ss_pred CcC
Q 041700 72 NEL 74 (75)
Q Consensus 72 n~~ 74 (75)
|.+
T Consensus 90 n~l 92 (362)
T 3goz_A 90 NFL 92 (362)
T ss_dssp SCG
T ss_pred CcC
Confidence 654
No 105
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.04 E-value=7.6e-10 Score=58.55 Aligned_cols=64 Identities=31% Similarity=0.567 Sum_probs=33.3
Q ss_pred cChhccCC---CCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 6 IPSALSNC---TYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 6 ~p~~~~~l---~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.|+.+..+ ++|+.+++++|.++ ..|..+. ++|+.+++++|.+.+ .|. +..+++|+.+++++|++
T Consensus 240 ~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 240 VNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTT
T ss_pred chhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCC
Confidence 34444444 35555555555555 3343332 455666666666552 222 44556666666666655
No 106
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.04 E-value=9.5e-10 Score=58.70 Aligned_cols=65 Identities=34% Similarity=0.490 Sum_probs=46.2
Q ss_pred hccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
.+..+++|+.+++++|.+... +.+..+++|+.+++++|.+.+..+..+..+++|+.+++++|+++
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 456667777777777776633 34667777777777777777666677777788888888877763
No 107
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.02 E-value=8.5e-10 Score=58.56 Aligned_cols=60 Identities=22% Similarity=0.249 Sum_probs=34.0
Q ss_pred CCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 13 CTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 13 l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+++|+.+++++|.+.. .+..+..+++|+.+++++|.+. .+|..+..+++|+.+++++|++
T Consensus 190 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCC
T ss_pred cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCc
Confidence 4555555555555552 2333555566666666666665 3455555666666666666654
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.00 E-value=2.8e-09 Score=56.16 Aligned_cols=38 Identities=34% Similarity=0.589 Sum_probs=15.4
Q ss_pred hcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCc
Q 041700 34 IGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73 (75)
Q Consensus 34 ~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~ 73 (75)
+..+++|+.+++++|.+.+..+ +..+++|+.+++++|.
T Consensus 152 l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 3334444444444444432211 3444444444444443
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.98 E-value=3.7e-09 Score=60.59 Aligned_cols=61 Identities=30% Similarity=0.454 Sum_probs=26.0
Q ss_pred ccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 10 ~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..| +..+++|+.|++++|.+
T Consensus 127 l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 127 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 33344444444444444322 334444444444444444442222 44444444444444443
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.95 E-value=4.9e-09 Score=55.21 Aligned_cols=60 Identities=25% Similarity=0.444 Sum_probs=28.2
Q ss_pred ccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCc
Q 041700 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73 (75)
Q Consensus 10 ~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~ 73 (75)
+..+++|+.+++++|.+....+ +..+++|+.+++++|.+.. .+ .+..+++|+.|++++|.
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~ 123 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNG 123 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSC
T ss_pred HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCc
Confidence 4445555555555555543222 4445555555555555442 11 24444444444444444
No 111
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.94 E-value=5.3e-09 Score=55.42 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=15.2
Q ss_pred hcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCc
Q 041700 34 IGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73 (75)
Q Consensus 34 ~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~ 73 (75)
+..+++|+.+++++|.+.+. +. +..+++|+.+++++|+
T Consensus 169 l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSC
T ss_pred hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCc
Confidence 33344444444444444321 11 3344444444444443
No 112
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.94 E-value=1.8e-09 Score=58.03 Aligned_cols=66 Identities=29% Similarity=0.333 Sum_probs=38.9
Q ss_pred hccCCCCCcEEEcccccCcccC-ChhhcCCCCCcE-EEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 9 ALSNCTYLQILHLSYNDFSGAV-PKDIGNLSKLKE-LYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~-~~~~~~~~~l~~-l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.|.++++|+.|++++|.+.... +..|..++++.. +.+..|.+....|..|..+++|+.+++++|.+
T Consensus 49 ~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l 116 (350)
T 4ay9_X 49 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI 116 (350)
T ss_dssp SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECC
T ss_pred HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccccc
Confidence 4566666666666666654332 234555555443 33445556545556677777777777777765
No 113
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.93 E-value=7.6e-09 Score=54.84 Aligned_cols=60 Identities=25% Similarity=0.409 Sum_probs=28.4
Q ss_pred ccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCc
Q 041700 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73 (75)
Q Consensus 10 ~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~ 73 (75)
+..+++|+.+++++|.+....+ +..+++|+.+++++|.+.+ . ..+..+++|+.|++++|.
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~ 118 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQ 118 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSC
T ss_pred hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCC
Confidence 4445555555555555542222 4455555555555555442 1 234444444444444444
No 114
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.92 E-value=2.9e-10 Score=60.40 Aligned_cols=61 Identities=25% Similarity=0.221 Sum_probs=24.6
Q ss_pred CCCCCcEEEcccccCccc-CChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCC
Q 041700 12 NCTYLQILHLSYNDFSGA-VPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSEN 72 (75)
Q Consensus 12 ~l~~l~~l~l~~~~~~~~-~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n 72 (75)
.+++|+.+++++|.+... .+..+..+++|+.+++++|.+.+..+..+..+++|+.|++++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 344444444444443322 3333334444444444444433333333334444444444443
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.92 E-value=8.3e-09 Score=53.70 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=8.9
Q ss_pred cccCCCCCEEecCCCcC
Q 041700 58 FGNLTELERMSLSENEL 74 (75)
Q Consensus 58 ~~~l~~L~~l~l~~n~~ 74 (75)
+..+++|+.|++++|++
T Consensus 124 l~~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 124 LIHLKNLEILSIRNNKL 140 (263)
T ss_dssp GTTCTTCCEEECTTSCC
T ss_pred hcCcccccEEECCCCcC
Confidence 44455555555555544
No 116
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.92 E-value=1.2e-09 Score=58.02 Aligned_cols=69 Identities=22% Similarity=0.295 Sum_probs=58.4
Q ss_pred cChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCc-cccc-ccCcccccCCCCCEEecCCC-cC
Q 041700 6 IPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRN-RLQG-EIPREFGNLTELERMSLSEN-EL 74 (75)
Q Consensus 6 ~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-~l~~-~~p~~~~~l~~L~~l~l~~n-~~ 74 (75)
+|..+..+++|+.+++++|.+....+..+..+++|+.+++++| .+.+ ..+..+..+++|+.|++++| .+
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence 6667888999999999999988777888888999999999998 5664 25666888999999999998 65
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.90 E-value=4.1e-09 Score=54.83 Aligned_cols=60 Identities=23% Similarity=0.361 Sum_probs=26.9
Q ss_pred cCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 11 SNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 11 ~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
..+++|+.+++++|.+. ..+ .+..+++|+.+++++|.+.+. +. +..+++|+.+++++|++
T Consensus 38 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRL 97 (263)
T ss_dssp HHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCC
T ss_pred hhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCcc
Confidence 34444555555555444 222 344444455555555544422 22 44444444444444443
No 118
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.87 E-value=1.3e-08 Score=56.44 Aligned_cols=61 Identities=25% Similarity=0.457 Sum_probs=41.6
Q ss_pred ccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 10 ~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+..+++|+.+++++|.+....+ +..+++|+.+++++|.+.+. +. +..+++|+.+++++|.+
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l 124 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLTLFNNQI 124 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCC
T ss_pred hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccC-hh-hcCCCCCCEEECCCCCC
Confidence 5667777777777777764432 66777777777777777633 32 66777777777777655
No 119
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.86 E-value=7.5e-10 Score=59.98 Aligned_cols=69 Identities=20% Similarity=0.201 Sum_probs=35.0
Q ss_pred cChhccCCCCCcEEEcccccCccc----CChhhcC--CCCCcEEEccCccccc----ccCccc-ccCCCCCEEecCCCcC
Q 041700 6 IPSALSNCTYLQILHLSYNDFSGA----VPKDIGN--LSKLKELYLGRNRLQG----EIPREF-GNLTELERMSLSENEL 74 (75)
Q Consensus 6 ~p~~~~~l~~l~~l~l~~~~~~~~----~~~~~~~--~~~l~~l~l~~~~l~~----~~p~~~-~~l~~L~~l~l~~n~~ 74 (75)
+|..+..+++|+.|++++|.+... .+..+.. +++|+.+++++|.+.. .+|..+ ..+++|+.+++++|++
T Consensus 236 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 344455555555555555555433 2233322 5555666666555553 244444 3355666666666554
No 120
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.86 E-value=5.6e-10 Score=60.47 Aligned_cols=39 Identities=23% Similarity=0.218 Sum_probs=18.3
Q ss_pred cCCCCCcEEEccCccccc----ccCcccccCCCCCEEecCCCc
Q 041700 35 GNLSKLKELYLGRNRLQG----EIPREFGNLTELERMSLSENE 73 (75)
Q Consensus 35 ~~~~~l~~l~l~~~~l~~----~~p~~~~~l~~L~~l~l~~n~ 73 (75)
..+++|+.+++++|.+.. .+|..+..+++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 344455555555555443 233344444455555555444
No 121
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.85 E-value=8.4e-09 Score=54.14 Aligned_cols=62 Identities=32% Similarity=0.389 Sum_probs=48.6
Q ss_pred cCCCCCcEEEcccccCccc--CChhhcCCCCCcEEEccCcccccccCcccccCC--CCCEEecCCCcC
Q 041700 11 SNCTYLQILHLSYNDFSGA--VPKDIGNLSKLKELYLGRNRLQGEIPREFGNLT--ELERMSLSENEL 74 (75)
Q Consensus 11 ~~l~~l~~l~l~~~~~~~~--~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~--~L~~l~l~~n~~ 74 (75)
..++.|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+. ..+..+. +|+.|++++|++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTT
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcC
Confidence 4578899999999999863 346677899999999999999843 2333344 899999999986
No 122
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.85 E-value=2.2e-08 Score=57.49 Aligned_cols=61 Identities=31% Similarity=0.525 Sum_probs=30.6
Q ss_pred ccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 10 ~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+
T Consensus 105 l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 165 (605)
T ss_dssp STTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCC
T ss_pred hccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcC
Confidence 44445555555555554421 2344555555555555555422 3455555566666655554
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.83 E-value=4.3e-11 Score=59.86 Aligned_cols=62 Identities=26% Similarity=0.400 Sum_probs=27.4
Q ss_pred ccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccC-cccccCCCCCEEecCCCc
Q 041700 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIP-REFGNLTELERMSLSENE 73 (75)
Q Consensus 10 ~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p-~~~~~l~~L~~l~l~~n~ 73 (75)
+..+++|+.+++++|.+.. .| .+..+++|+.+++++|.+....+ ..+..+++|+.+++++|+
T Consensus 89 ~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 89 DAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred hhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 3333444444444444442 11 33444445555555554442111 234555555555555554
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.83 E-value=2.5e-08 Score=57.40 Aligned_cols=59 Identities=27% Similarity=0.296 Sum_probs=47.9
Q ss_pred CCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 12 NCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 12 ~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
.+++|+.+++++|.+. ..|. .+++|+.+++++|.+. .+|..+..+++|+.+++++|+++
T Consensus 239 ~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 239 LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence 4567788888888777 3443 5678999999999998 77888999999999999999874
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.82 E-value=1.3e-08 Score=58.07 Aligned_cols=62 Identities=24% Similarity=0.344 Sum_probs=43.5
Q ss_pred cChhccCCCCCcEEEcccccCcccCChhhcCCCCC-------cEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 6 IPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKL-------KELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 6 ~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l-------~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
+|. +. ++|+.|++++|.++ ..|. +.. +| +.+++++|.+. .+|..+..+++|+.+++++|+++
T Consensus 175 lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 175 LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCC
T ss_pred cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCC
Confidence 455 43 67777777777777 4444 433 56 88888888887 67777777888889999888874
No 126
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.82 E-value=1.6e-09 Score=58.43 Aligned_cols=67 Identities=19% Similarity=0.247 Sum_probs=37.0
Q ss_pred hhccCCC-CCcEEEcccccCcccCChhhcCC-----CCCcEEEccCcccccccCcc----cccC-CCCCEEecCCCcC
Q 041700 8 SALSNCT-YLQILHLSYNDFSGAVPKDIGNL-----SKLKELYLGRNRLQGEIPRE----FGNL-TELERMSLSENEL 74 (75)
Q Consensus 8 ~~~~~l~-~l~~l~l~~~~~~~~~~~~~~~~-----~~l~~l~l~~~~l~~~~p~~----~~~l-~~L~~l~l~~n~~ 74 (75)
..+..++ +|+.+++++|.+....+..+..+ ++|+.+++++|.+.+..+.. +..+ ++|+.|++++|.+
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 121 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC
Confidence 3445555 66666666666665555444443 56666666666665443332 2222 4566666666554
No 127
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.82 E-value=2.2e-08 Score=55.52 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=6.7
Q ss_pred cccCCCCCEEecCCCc
Q 041700 58 FGNLTELERMSLSENE 73 (75)
Q Consensus 58 ~~~l~~L~~l~l~~n~ 73 (75)
+..+++|+.+++++|+
T Consensus 349 l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQ 364 (466)
T ss_dssp GTTCTTCCEEECCSSC
T ss_pred hccCCCCCEEeCCCCc
Confidence 3334444444444443
No 128
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.80 E-value=3.4e-08 Score=54.93 Aligned_cols=60 Identities=22% Similarity=0.257 Sum_probs=33.1
Q ss_pred hccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.+..+++|+.+++++|.+.+. + +..+++|+.+++++|.+.+ .+ +..+++|+++++++|++
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l 118 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKL 118 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCC
T ss_pred hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcC
Confidence 455566666666666665532 2 4555556666666665553 22 45555555555555544
No 129
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.76 E-value=1.7e-09 Score=59.49 Aligned_cols=70 Identities=23% Similarity=0.288 Sum_probs=52.7
Q ss_pred cChhccCCCCCcEEEcccccCcccCChhhcC-----CCCCcEEEccCccccc----ccCcccccCCCCCEEecCCCcCC
Q 041700 6 IPSALSNCTYLQILHLSYNDFSGAVPKDIGN-----LSKLKELYLGRNRLQG----EIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 6 ~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~-----~~~l~~l~l~~~~l~~----~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
++..+..+++|+.+++++|.+....+..+.. .++|+.+++++|.+.. .+|..+..+++|+.+++++|+++
T Consensus 333 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 333 FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 4555667788888888888887554444432 5688999999888874 56777788889999999988764
No 130
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.74 E-value=2.2e-08 Score=55.70 Aligned_cols=64 Identities=17% Similarity=0.218 Sum_probs=55.1
Q ss_pred ChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcCC
Q 041700 7 PSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 7 p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
+..+..++.|+.+++++|.+.+. | .+..+++|+.+++++|.+.+ .| +..+++|+.+++++|.++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~ 98 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLT 98 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred ccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCc
Confidence 44667789999999999999854 4 68899999999999999985 44 888999999999999874
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.71 E-value=8e-08 Score=53.43 Aligned_cols=62 Identities=29% Similarity=0.522 Sum_probs=41.8
Q ss_pred cChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 6 IPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 6 ~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+| .+..+++|+.+++++|.+.+ .|.. ..+|+.+++++|.+.+ +| .+..+++|+.+++++|.+
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCC
T ss_pred Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcC
Confidence 55 46777777777777777763 3332 2467777777777763 45 467777777777777765
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.70 E-value=4.3e-08 Score=52.69 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=52.5
Q ss_pred ccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccC-cccccCCCCCE-EecCCCcC
Q 041700 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIP-REFGNLTELER-MSLSENEL 74 (75)
Q Consensus 5 ~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p-~~~~~l~~L~~-l~l~~n~~ 74 (75)
++|..+ .++++.|++++|.++...+..|..+++|+.+++++|.+.+.+| ..|.+++++.. +.+..|++
T Consensus 23 ~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 23 EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 467655 3689999999999997666789999999999999999865444 56788888765 44555655
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.68 E-value=9.4e-08 Score=50.99 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=45.5
Q ss_pred hhccCCCCCcEEEcccccCcccCChhhcCCCCCc-EEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 8 SALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLK-ELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 8 ~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~-~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
..|.+|.+|+.+.++.| +....+.+|..+.+|+ .+.+.. .+....+..|.++.+|+.+++.+|.+
T Consensus 244 ~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc
Confidence 45677777777777776 5556667777777777 777766 55545556777777888787766654
No 134
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.64 E-value=1.8e-07 Score=53.56 Aligned_cols=54 Identities=24% Similarity=0.354 Sum_probs=23.4
Q ss_pred CCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 13 CTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 13 l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+++|+.|++++|.++. .|. .+++|+.+++++|.+.+ +|. +. ++|+.|++++|.|
T Consensus 139 l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 139 PALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLL 192 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCC
T ss_pred CccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCC
Confidence 3444444444444442 222 23444444444444442 333 32 4445555554443
No 135
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.59 E-value=3.1e-07 Score=51.13 Aligned_cols=60 Identities=27% Similarity=0.385 Sum_probs=35.5
Q ss_pred hccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.+..+++|+.+++++|.+.+ .|.. ..+|+.+++++|.+. .+|. +..+++|+.+++++|++
T Consensus 190 ~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLL 249 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCC
T ss_pred cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcC
Confidence 45666666666666666653 2221 135666666666665 4453 66666777777766654
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.50 E-value=3.4e-08 Score=54.39 Aligned_cols=69 Identities=29% Similarity=0.353 Sum_probs=44.8
Q ss_pred cChhccCCCCCcEEEcccccCcccCChhh-cCCC----CCcEEEccCccccc----ccCcccccCCCCCEEecCCCcC
Q 041700 6 IPSALSNCTYLQILHLSYNDFSGAVPKDI-GNLS----KLKELYLGRNRLQG----EIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 6 ~p~~~~~l~~l~~l~l~~~~~~~~~~~~~-~~~~----~l~~l~l~~~~l~~----~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
++..+..+++|+.+++++|.+....+..+ ..+. +|+.+++++|.+.. .++..+..+++|+.+++++|.+
T Consensus 48 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 125 (461)
T 1z7x_W 48 ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125 (461)
T ss_dssp HHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred HHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC
Confidence 34556667777788887777764433332 2233 57778877777763 3466677777777777777765
No 137
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.49 E-value=6e-07 Score=51.87 Aligned_cols=52 Identities=21% Similarity=0.322 Sum_probs=24.7
Q ss_pred CCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCc
Q 041700 14 TYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73 (75)
Q Consensus 14 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~ 73 (75)
++|+.|++++|.+. ..|. .+++|+.|++++|.++ .+|. .+++|+.|++++|.
T Consensus 61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCC
T ss_pred CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCc
Confidence 45555555555555 2222 3445555555555554 2333 33444444444443
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.49 E-value=4.4e-08 Score=53.34 Aligned_cols=66 Identities=23% Similarity=0.225 Sum_probs=38.5
Q ss_pred hccCCCCCcEEEcccccCcccC----ChhhcCCCCCcEEEccCcccccc----cCcccccCCCCCEEecCCCcC
Q 041700 9 ALSNCTYLQILHLSYNDFSGAV----PKDIGNLSKLKELYLGRNRLQGE----IPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~----~~~~~~~~~l~~l~l~~~~l~~~----~p~~~~~l~~L~~l~l~~n~~ 74 (75)
.+..+++|+.|++++|.+.... ...+...++|+.+++++|.+... +...+...++|+.|++++|.|
T Consensus 178 ~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 178 GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 3345666777777777665322 23345556677777777766532 223344456677777777765
No 139
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.46 E-value=3.2e-07 Score=48.20 Aligned_cols=62 Identities=26% Similarity=0.424 Sum_probs=47.9
Q ss_pred ccChhccCCCCCcEEEcccccCcccCChhhcCCC--CCcEEEccCcccccccCc-------ccccCCCCCEEe
Q 041700 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLS--KLKELYLGRNRLQGEIPR-------EFGNLTELERMS 68 (75)
Q Consensus 5 ~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~--~l~~l~l~~~~l~~~~p~-------~~~~l~~L~~l~ 68 (75)
.+|+.+..+++|+.|++++|.+.+. ..+..+. +|+.|++.+|.+.+..|. .+..+++|+.||
T Consensus 187 ~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 187 DMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 4567777899999999999999854 2333333 899999999999865552 367788888776
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.36 E-value=6e-08 Score=54.84 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=40.5
Q ss_pred CCCCcEEEcccccCccc-CChhhcCCCCCcEEEccCcccccc-cCcccccCCCCCEEecCCCcCC
Q 041700 13 CTYLQILHLSYNDFSGA-VPKDIGNLSKLKELYLGRNRLQGE-IPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 13 l~~l~~l~l~~~~~~~~-~~~~~~~~~~l~~l~l~~~~l~~~-~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
+++|+.+++++|.++.. .+..+..+++|+.+++++|.+... .+..+..+++|+.|++++|+++
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 66677777777766542 233346677788888877776532 2334456777888888877653
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.30 E-value=2e-06 Score=45.91 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=54.1
Q ss_pred ChhccCCCCCc-EEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEec
Q 041700 7 PSALSNCTYLQ-ILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSL 69 (75)
Q Consensus 7 p~~~~~l~~l~-~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l 69 (75)
+..|.+|.+|+ .+.++. .+....+.+|..+.+|+.+++..+.+....+..|.++++|+.+..
T Consensus 266 ~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 266 QRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred HHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 46788999999 999988 777688899999999999999999998677778999999998763
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.20 E-value=1.1e-06 Score=47.94 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=42.1
Q ss_pred CCCCCcEEEcccccCccc----CChhhcCCCCCcEEEccCcccccc----cCcccccCCCCCEEecCCCcCC
Q 041700 12 NCTYLQILHLSYNDFSGA----VPKDIGNLSKLKELYLGRNRLQGE----IPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 12 ~l~~l~~l~l~~~~~~~~----~~~~~~~~~~l~~l~l~~~~l~~~----~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
..+.|+.|++++|.++.. .+..+...++|+.+++++|.+... +++.+...++|+.|++++|.++
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 356677888888777642 223345667788888888877632 2345566677888888887763
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.18 E-value=2e-07 Score=52.69 Aligned_cols=62 Identities=10% Similarity=0.155 Sum_probs=37.8
Q ss_pred CCCCcEEEcccccCcccCChhh-cCCCCCcEEEccCcccccccCc-ccccCCCCCEEecCCCcC
Q 041700 13 CTYLQILHLSYNDFSGAVPKDI-GNLSKLKELYLGRNRLQGEIPR-EFGNLTELERMSLSENEL 74 (75)
Q Consensus 13 l~~l~~l~l~~~~~~~~~~~~~-~~~~~l~~l~l~~~~l~~~~p~-~~~~l~~L~~l~l~~n~~ 74 (75)
+++|+.+++++|.++......+ ..+++|+.+++++|.+...... ....+++|+.|++++|++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 5667777777776654433333 4567777777777776432222 334467777777777754
No 144
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.16 E-value=1.5e-05 Score=37.67 Aligned_cols=36 Identities=28% Similarity=0.288 Sum_probs=20.5
Q ss_pred CCcEEEccCcccccccCcccccCCCCCEEecCCCcC
Q 041700 39 KLKELYLGRNRLQGEIPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 39 ~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+++.|++++|.++...+..|..+++|+.+++++|++
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 456666666666544444455566666666666654
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.09 E-value=2.2e-06 Score=42.57 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=6.4
Q ss_pred CCCcEEEccCcccc
Q 041700 38 SKLKELYLGRNRLQ 51 (75)
Q Consensus 38 ~~l~~l~l~~~~l~ 51 (75)
++|+.+++++|.+.
T Consensus 93 ~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 93 NTLKSLNVESNFIS 106 (185)
T ss_dssp SSCCEEECCSSCCC
T ss_pred CCcCEEECcCCcCC
Confidence 34444444444443
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.03 E-value=4.2e-06 Score=41.61 Aligned_cols=34 Identities=9% Similarity=0.064 Sum_probs=17.2
Q ss_pred CCcEEEcccccCcccCChhhcCCCCCcEEEccCc
Q 041700 15 YLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRN 48 (75)
Q Consensus 15 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~ 48 (75)
.|+.++++++.++...-..+..+++|+.|++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3555555555554444444445555555555544
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.03 E-value=1.7e-06 Score=42.97 Aligned_cols=68 Identities=10% Similarity=0.114 Sum_probs=51.1
Q ss_pred hhccCCCCCcEEEcccc-cCcccC----ChhhcCCCCCcEEEccCcccccc----cCcccccCCCCCEEecCCCcCC
Q 041700 8 SALSNCTYLQILHLSYN-DFSGAV----PKDIGNLSKLKELYLGRNRLQGE----IPREFGNLTELERMSLSENELQ 75 (75)
Q Consensus 8 ~~~~~l~~l~~l~l~~~-~~~~~~----~~~~~~~~~l~~l~l~~~~l~~~----~p~~~~~l~~L~~l~l~~n~~~ 75 (75)
..+...+.|+.+++++| .+.... ...+...++|+.+++++|.+... +.+.+...+.|+.|++++|.|.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34567889999999999 887432 34456678899999999998632 3344556678999999999874
No 148
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.99 E-value=1.1e-06 Score=49.70 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=34.3
Q ss_pred CCCCCcEEEcccccCcccC----ChhhcCCCCCcEEEccCcccc----cccCcccccCCCCCEEecCCCc
Q 041700 12 NCTYLQILHLSYNDFSGAV----PKDIGNLSKLKELYLGRNRLQ----GEIPREFGNLTELERMSLSENE 73 (75)
Q Consensus 12 ~l~~l~~l~l~~~~~~~~~----~~~~~~~~~l~~l~l~~~~l~----~~~p~~~~~l~~L~~l~l~~n~ 73 (75)
.+++|+.|++++|.+.... +.....+++|+.++++.|.+. ..++..+..+++|+.|++++|.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 5666777777776654332 122344556666666666554 1233344556666666666654
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.98 E-value=2.3e-06 Score=42.50 Aligned_cols=65 Identities=11% Similarity=0.153 Sum_probs=49.8
Q ss_pred hccCCCCCcEEEccccc-CcccCChhhcCC----CCCcEEEccCcc-cccccCcccccCCCCCEEecCCCc
Q 041700 9 ALSNCTYLQILHLSYND-FSGAVPKDIGNL----SKLKELYLGRNR-LQGEIPREFGNLTELERMSLSENE 73 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~-~~~~~~~~~~~~----~~l~~l~l~~~~-l~~~~p~~~~~l~~L~~l~l~~n~ 73 (75)
.+..|++|+.|+++++. ++...-..+..+ ++|+.|++++|. ++...-..+..+++|+.|+++++.
T Consensus 80 ~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 80 HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 46789999999999985 765555556654 479999999885 664444557789999999998864
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.95 E-value=1.2e-06 Score=49.58 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=43.0
Q ss_pred ccCCCCCcEEEcccccCcccCChhhcC-CCCCcEEEccCcccccccCccc-ccCCCCCEEecCCCcC
Q 041700 10 LSNCTYLQILHLSYNDFSGAVPKDIGN-LSKLKELYLGRNRLQGEIPREF-GNLTELERMSLSENEL 74 (75)
Q Consensus 10 ~~~l~~l~~l~l~~~~~~~~~~~~~~~-~~~l~~l~l~~~~l~~~~p~~~-~~l~~L~~l~l~~n~~ 74 (75)
+..+++|+.+++++ .+.......+.. +++|+.+++++|.+.+..+..+ ..+++|+.|++++|.+
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 45567777777765 444333344443 6788888888888764434343 5688899999988875
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.94 E-value=3.8e-05 Score=42.37 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=29.2
Q ss_pred hccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCCc
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSENE 73 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n~ 73 (75)
.|.+|++|+.+.+. +.+.......|..+.+|+.+.+..+ +.......|.++ +|+.+.+.+|.
T Consensus 295 aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 295 CLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred HhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 34444444444444 2233344444555555555555332 332334455555 56555555543
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.86 E-value=6.2e-05 Score=41.56 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=48.1
Q ss_pred ChhccCCCCCcEEEcccccCc-----ccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCC
Q 041700 7 PSALSNCTYLQILHLSYNDFS-----GAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSEN 72 (75)
Q Consensus 7 p~~~~~l~~l~~l~l~~~~~~-----~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n 72 (75)
+..|.+|++|+.+.+..+.+. ...+..|..+.+|+.+.+.. .+.......|.++.+|+.+.+..|
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence 457778888888888777654 45667788888888888874 455455667888888888888554
No 153
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.86 E-value=4.3e-05 Score=36.09 Aligned_cols=45 Identities=24% Similarity=0.322 Sum_probs=37.0
Q ss_pred ccChhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccc
Q 041700 5 GIPSALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQ 51 (75)
Q Consensus 5 ~~p~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~ 51 (75)
.+|..+ ..+++.|++++|.++...+..|..+++|+.+++.+|.+.
T Consensus 24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 455432 347899999999999777788999999999999999875
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.85 E-value=4.6e-06 Score=45.49 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=32.6
Q ss_pred CCCCcEEEcccccCcccCChhh---cCCCCCcEEEccCcccccc----cCcccccCCCCCEEecCCCcC
Q 041700 13 CTYLQILHLSYNDFSGAVPKDI---GNLSKLKELYLGRNRLQGE----IPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 13 l~~l~~l~l~~~~~~~~~~~~~---~~~~~l~~l~l~~~~l~~~----~p~~~~~l~~L~~l~l~~n~~ 74 (75)
+++|+.|.+..|.+....+..+ ..+++|+.|+++.|.+... ++..+..+++|+.|++++|.+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 4566666666655543222222 1345666666666665532 222233456677777766655
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.66 E-value=0.00016 Score=39.27 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=41.8
Q ss_pred hccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCC
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSE 71 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~ 71 (75)
.|.+|.+|+.+.+..+.+.......|..+.+|+.+.+..+ +.......|.++.+|+.+.+..
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 5666777777777777666666677777777877777543 4333445677777777776643
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.63 E-value=0.00043 Score=37.86 Aligned_cols=63 Identities=14% Similarity=0.276 Sum_probs=42.8
Q ss_pred hhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCC
Q 041700 8 SALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSEN 72 (75)
Q Consensus 8 ~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n 72 (75)
..|.+|.+|+.+.+..+ +......+|.++.+|+.+.+..+ +.......|.++.+|+.+++.++
T Consensus 305 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 305 SVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred eeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 35667777777777654 44456667777888888877543 44344567788888888877665
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.60 E-value=0.00017 Score=39.41 Aligned_cols=62 Identities=18% Similarity=0.288 Sum_probs=41.2
Q ss_pred hhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCC
Q 041700 8 SALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSE 71 (75)
Q Consensus 8 ~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~ 71 (75)
..|.+|.+|+.+.+..+ +......+|.++.+|+.+.+..+ +.......|.++.+|+.+++..
T Consensus 314 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 35667777777777543 55456667777777877777654 4434456777777887777654
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.08 E-value=0.0037 Score=33.92 Aligned_cols=63 Identities=21% Similarity=0.272 Sum_probs=42.7
Q ss_pred hccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCC
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSEN 72 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n 72 (75)
.|..+..++.+.+..+ +.......|..+.+|+.+.+..+.+.......|.++.+|+.+.+.++
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 3445566666655433 33345566778888888888777776455667888888988888653
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.87 E-value=0.0058 Score=33.49 Aligned_cols=60 Identities=18% Similarity=0.315 Sum_probs=34.3
Q ss_pred ccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCC
Q 041700 10 LSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSE 71 (75)
Q Consensus 10 ~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~ 71 (75)
|.++..|+.+.+. +.+.......|..+.+|+.+.+..+ +.......|.++.+|+.+.+..
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~ 343 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS 343 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT
T ss_pred cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc
Confidence 3444555555543 2333345556667777777777543 3323445677777777777754
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.87 E-value=0.0038 Score=34.17 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=47.1
Q ss_pred hccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCCC
Q 041700 9 ALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSEN 72 (75)
Q Consensus 9 ~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~n 72 (75)
.|..+.+|+.+.+..+ +......+|..+.+|+.+.+..+ +.......|.++.+|+.+.+..+
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 5667888888887654 55566778889999999998644 55455678999999999988655
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.70 E-value=0.0024 Score=32.32 Aligned_cols=62 Identities=13% Similarity=0.138 Sum_probs=30.3
Q ss_pred CCCCcEEEcccc-cCccc----CChhhcCCCCCcEEEccCcccccc----cCcccccCCCCCEEecCCCcC
Q 041700 13 CTYLQILHLSYN-DFSGA----VPKDIGNLSKLKELYLGRNRLQGE----IPREFGNLTELERMSLSENEL 74 (75)
Q Consensus 13 l~~l~~l~l~~~-~~~~~----~~~~~~~~~~l~~l~l~~~~l~~~----~p~~~~~l~~L~~l~l~~n~~ 74 (75)
-+.|+.|+++++ .+... ....+..-..|+.|++++|.+... +.+.+..-..|+.|++++|.|
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 345666666653 44422 122334445566666666665421 122233344566666666654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.17 E-value=0.0027 Score=32.15 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=41.5
Q ss_pred ccCCCCCcEEEcccccCcccCCh----hhcCCCCCcEEEccCcccccc----cCcccccCCCCCEEecCCC
Q 041700 10 LSNCTYLQILHLSYNDFSGAVPK----DIGNLSKLKELYLGRNRLQGE----IPREFGNLTELERMSLSEN 72 (75)
Q Consensus 10 ~~~l~~l~~l~l~~~~~~~~~~~----~~~~~~~l~~l~l~~~~l~~~----~p~~~~~l~~L~~l~l~~n 72 (75)
+..-+.|+.|++++|.+...... .+..-..|+.|++++|.+... +-+.+..-..|+.|++++|
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 34456788889988888754333 344456788888888888632 2233444556888888754
No 163
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.15 E-value=0.0053 Score=33.68 Aligned_cols=14 Identities=14% Similarity=0.354 Sum_probs=8.5
Q ss_pred CCCCCEEecCCCcC
Q 041700 61 LTELERMSLSENEL 74 (75)
Q Consensus 61 l~~L~~l~l~~n~~ 74 (75)
+++|+.|++.+|.+
T Consensus 251 ~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 251 FPNLKWLGIVDAEE 264 (362)
T ss_dssp CTTCCEEEEESCTT
T ss_pred CCCcCEEeCCCCCC
Confidence 55666666666543
No 164
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=93.86 E-value=0.18 Score=22.64 Aligned_cols=40 Identities=15% Similarity=0.085 Sum_probs=30.9
Q ss_pred hhccCCCCCcEEEcccccCcccCChhhcCCCCCcEEEccCc
Q 041700 8 SALSNCTYLQILHLSYNDFSGAVPKDIGNLSKLKELYLGRN 48 (75)
Q Consensus 8 ~~~~~l~~l~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~ 48 (75)
..|.+|.+|+.+.+..+- +.+...+|..+.+|+.+.+...
T Consensus 14 ~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred HHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 577889999988887653 3467778888999988888654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=90.25 E-value=0.68 Score=20.75 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=32.8
Q ss_pred ccCcccCChhhcCCCCCcEEEccCcccccccCcccccCCCCCEEecCC
Q 041700 24 NDFSGAVPKDIGNLSKLKELYLGRNRLQGEIPREFGNLTELERMSLSE 71 (75)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~p~~~~~l~~L~~l~l~~ 71 (75)
..++.+....|.++.+|+.+.+-.+ +.......|.+|.+|+.+.+.+
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3455566677888888888887654 3324456788888888887764
No 166
>1v18_B APC protein, adenomatous polyposis coli; signaling protein, signalling complex, WNT signal, beta-catenin degradation complex, cell adhesion; HET: SEP; 2.1A {Homo sapiens}
Probab=23.72 E-value=39 Score=12.82 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=7.0
Q ss_pred cCcccccCCCCCEEecCC
Q 041700 54 IPREFGNLTELERMSLSE 71 (75)
Q Consensus 54 ~p~~~~~l~~L~~l~l~~ 71 (75)
.|+.|..-.+|..|.+..
T Consensus 15 ~~~~FScaSSLSAL~l~E 32 (47)
T 1v18_B 15 TPDGFSCSSSLSALSLDE 32 (47)
T ss_dssp CCCCCC----CCCCCCSS
T ss_pred CCCCccchhccccccccc
Confidence 345555555555555543
Done!