Query 041701
Match_columns 83
No_of_seqs 106 out of 141
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 09:46:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041701.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041701hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03070 photosystem I reactio 32.7 33 0.00072 24.4 1.8 20 1-20 1-20 (128)
2 smart00107 BTK Bruton's tyrosi 15.2 84 0.0018 17.5 0.8 13 60-72 3-15 (36)
3 PF04817 Umbravirus_LDM: Umbra 13.2 2.7E+02 0.0059 21.6 3.3 55 6-69 1-55 (231)
4 COG4894 Uncharacterized conser 7.7 1.2E+02 0.0026 22.3 -0.3 12 63-74 99-110 (159)
5 PF08057 Ery_res_leader2: Eryt 7.6 2E+02 0.0043 13.1 0.5 12 1-12 1-12 (14)
6 PF15060 PPDFL: Differentiatio 7.2 2.6E+02 0.0057 19.4 1.2 31 6-37 1-31 (110)
7 cd01998 tRNA_Me_trans tRNA met 7.1 1.4E+02 0.003 23.4 -0.2 23 17-39 171-193 (349)
8 TIGR00315 cdhB CO dehydrogenas 7.1 1.9E+02 0.0041 20.7 0.5 20 60-79 137-157 (162)
9 PF03054 tRNA_Me_trans: tRNA m 6.8 1.1E+02 0.0024 24.5 -0.9 24 16-39 174-197 (356)
10 COG1880 CdhB CO dehydrogenase/ 6.7 1.7E+02 0.0038 21.7 0.2 13 67-79 153-165 (170)
No 1
>PLN03070 photosystem I reaction center subunit psaK 247; Provisional
Probab=32.70 E-value=33 Score=24.40 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=16.6
Q ss_pred CcccccccccccccccCccc
Q 041701 1 MAHQLMTSVPALTRLQEPRS 20 (83)
Q Consensus 1 ~~~~~~~~~p~~~~l~~~~~ 20 (83)
||-+|+++.|.|.-|-...+
T Consensus 1 ~~~~~~~~~p~F~glr~~~~ 20 (128)
T PLN03070 1 MASTMMTTLPQFNGLRASSA 20 (128)
T ss_pred Cccccccccccccccccccc
Confidence 89999999999987766544
No 2
>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.
Probab=15.16 E-value=84 Score=17.46 Aligned_cols=13 Identities=31% Similarity=0.703 Sum_probs=10.4
Q ss_pred ccCCCCCCCCCch
Q 041701 60 RRSANYQPSMWSY 72 (83)
Q Consensus 60 RRSaNY~PSiWd~ 72 (83)
.|...|||..|-+
T Consensus 3 ~~l~~yHP~~~~~ 15 (36)
T smart00107 3 NLLQKYHPSFWVD 15 (36)
T ss_pred ccccccCCCceeC
Confidence 5678899999954
No 3
>PF04817 Umbravirus_LDM: Umbravirus long distance movement (LDM) family ; InterPro: IPR006902 The long distance movement protein of Umbraviruses mediates the movement of viral RNA through the phloem of infected plants [].
Probab=13.19 E-value=2.7e+02 Score=21.63 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=37.7
Q ss_pred cccccccccccCccccccccCCCccccCCCCccccCCcccccccccccccccccccCCCCCCCC
Q 041701 6 MTSVPALTRLQEPRSFISSLGSPSISKSNSNGFCASPIQCMSATKVRDKAINDNRRSANYQPSM 69 (83)
Q Consensus 6 ~~~~p~~~~l~~~~~~~~~~~~~~~~~~~s~~~~~~~v~C~~~~~~~~~~~~v~RRSaNY~PSi 69 (83)
|++|.+|+ .-.-+++.+-.-+++++.++..|+...+..|..... .|+-++-+|.+
T Consensus 1 MssiiNV~-~n~ksr~~r~~~~~svRrg~~~~a~g~kpr~~~~~~--------rr~~g~~hpa~ 55 (231)
T PF04817_consen 1 MSSIINVN-ANGKSRNSRRAPQSSVRRGDRKGARGDKPRSPHPPP--------RRPKGGMHPAT 55 (231)
T ss_pred Cceeeeec-cCCccccCCCCCCCCcccCCccCCCCCCCCCCCCCc--------cccCCCCCCCC
Confidence 56777663 222345566778899999999999988888876522 35566666654
No 4
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=7.69 E-value=1.2e+02 Score=22.32 Aligned_cols=12 Identities=8% Similarity=0.537 Sum_probs=9.6
Q ss_pred CCCCCCCCchhh
Q 041701 63 ANYQPSMWSYDY 74 (83)
Q Consensus 63 aNY~PSiWd~df 74 (83)
=.-|.|+||+.|
T Consensus 99 ~eihGNi~d~ef 110 (159)
T COG4894 99 WEIHGNIWDDEF 110 (159)
T ss_pred eEEecceeceEE
Confidence 456899999887
No 5
>PF08057 Ery_res_leader2: Erythromycin resistance leader peptide; InterPro: IPR012559 This family consists of erythromycin resistance gene leader peptides. These leader peptides are involved in the transcriptional attenuation control of the synthesis of the macrolide-lincosamide -streptogramin B resistance protein. It acts as a transcriptional attenuator, in contrast to other inducible erm genes. The mRNA leader sequence can fold in either of two mutually exclusive conformations, one of which is postulated to form in the absence of induction, and to contain two rho factor-independent terminators [].; GO: 0046677 response to antibiotic
Probab=7.61 E-value=2e+02 Score=13.13 Aligned_cols=12 Identities=33% Similarity=0.639 Sum_probs=6.2
Q ss_pred Cccccccccccc
Q 041701 1 MAHQLMTSVPAL 12 (83)
Q Consensus 1 ~~~~~~~~~p~~ 12 (83)
|.|+|--.+|.|
T Consensus 1 mthsmrlrfptl 12 (14)
T PF08057_consen 1 MTHSMRLRFPTL 12 (14)
T ss_pred Cccceeeecccc
Confidence 455555555544
No 6
>PF15060 PPDFL: Differentiation and proliferation regulator
Probab=7.17 E-value=2.6e+02 Score=19.41 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=14.9
Q ss_pred cccccccccccCccccccccCCCccccCCCCc
Q 041701 6 MTSVPALTRLQEPRSFISSLGSPSISKSNSNG 37 (83)
Q Consensus 6 ~~~~p~~~~l~~~~~~~~~~~~~~~~~~~s~~ 37 (83)
||+||+---|=.-+-.-++ ++.+.+.++|||
T Consensus 1 MAaIPSsGsL~At~~YYRr-~~~S~sS~sSc~ 31 (110)
T PF15060_consen 1 MAAIPSSGSLVATHDYYRR-RLGSTSSNSSCG 31 (110)
T ss_pred CCccccccceeecchhhhh-ccccccccCCcC
Confidence 5778854322222222222 455555566665
No 7
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=7.13 E-value=1.4e+02 Score=23.35 Aligned_cols=23 Identities=39% Similarity=0.712 Sum_probs=19.5
Q ss_pred CccccccccCCCccccCCCCccc
Q 041701 17 EPRSFISSLGSPSISKSNSNGFC 39 (83)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~s~~~~ 39 (83)
+++..+..++.|...|..||+.|
T Consensus 171 eVr~~A~~~gl~~~~k~~s~~iC 193 (349)
T cd01998 171 EVREIAKELGLPVAKKKDSQGIC 193 (349)
T ss_pred HHHHHHHHcCCCCCCCCCCCceE
Confidence 44566778899999999999999
No 8
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=7.05 E-value=1.9e+02 Score=20.75 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=15.4
Q ss_pred ccCCCCC-CCCCchhhhhccc
Q 041701 60 RRSANYQ-PSMWSYDYLQSLS 79 (83)
Q Consensus 60 RRSaNY~-PSiWd~dfIqSL~ 79 (83)
-+.|.|. ||+++++++++|.
T Consensus 137 ~pnA~~Sf~n~~~~~~~~~l~ 157 (162)
T TIGR00315 137 QPNADYSFPNLSKDEYLDYLR 157 (162)
T ss_pred CCCCceeccccCHHHHHHHHH
Confidence 4567777 8888888888775
No 9
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=6.82 E-value=1.1e+02 Score=24.54 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=14.8
Q ss_pred cCccccccccCCCccccCCCCccc
Q 041701 16 QEPRSFISSLGSPSISKSNSNGFC 39 (83)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~s~~~~ 39 (83)
++.++.+..+++|...|.-|||.|
T Consensus 174 ~eVR~iA~~~gl~~a~k~eSq~iC 197 (356)
T PF03054_consen 174 EEVREIAREAGLPVAEKKESQGIC 197 (356)
T ss_dssp HHHHHHHHHCT-TTTT-----SST
T ss_pred HHHHHHHHhcCCcccCccccceEE
Confidence 345677888999999999999999
No 10
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=6.74 E-value=1.7e+02 Score=21.70 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=10.6
Q ss_pred CCCCchhhhhccc
Q 041701 67 PSMWSYDYLQSLS 79 (83)
Q Consensus 67 PSiWd~dfIqSL~ 79 (83)
||+|.++|++.|.
T Consensus 153 pNl~kde~~~~L~ 165 (170)
T COG1880 153 PNLSKDEYLAYLD 165 (170)
T ss_pred CCcCHHHHHHHHH
Confidence 6789999988775
Done!