Query 041701
Match_columns 83
No_of_seqs 106 out of 141
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 16:41:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041701.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041701hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j5c_A 1,8-cineole synthase; t 97.6 8.1E-06 2.8E-10 66.3 0.0 26 57-82 32-57 (569)
2 3m00_A Aristolochene synthase; 97.6 1.2E-05 4.3E-10 65.4 0.8 25 57-81 14-38 (550)
3 3sdr_A Alpha-bisabolene syntha 97.6 1.1E-05 3.6E-10 68.3 0.3 26 57-82 22-47 (817)
4 1n1b_A (+)-bornyl diphosphate 97.5 1.9E-05 6.4E-10 63.8 1.2 26 57-82 3-28 (549)
5 3g4d_A (+)-delta-cadinene synt 97.5 2.3E-05 8E-10 63.8 1.4 25 57-82 19-43 (554)
6 3n0f_A Isoprene synthase; terp 97.3 5.8E-05 2E-09 61.4 1.6 25 58-82 13-37 (555)
7 2wsc_K Photosystem I reaction 26.3 14 0.00048 25.3 0.0 30 1-30 1-32 (131)
8 2ys2_A Cytoplasmic tyrosine-pr 12.4 79 0.0027 18.0 1.1 14 59-72 9-22 (50)
9 3ukw_C Bimax1 peptide; arm rep 6.7 2.4E+02 0.0081 14.3 1.4 14 60-73 4-17 (28)
10 2e6i_A Tyrosine-protein kinase 5.3 2E+02 0.0069 17.0 0.7 14 59-72 9-22 (64)
No 1
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=97.61 E-value=8.1e-06 Score=66.26 Aligned_cols=26 Identities=31% Similarity=0.793 Sum_probs=0.0
Q ss_pred cccccCCCCCCCCCchhhhhcccCCC
Q 041701 57 NDNRRSANYQPSMWSYDYLQSLSNGY 82 (83)
Q Consensus 57 ~v~RRSaNY~PSiWd~dfIqSL~s~y 82 (83)
+..||++||+|++||++||+|+.+.|
T Consensus 32 ~~~r~~~~~~ps~W~~~fl~~~~~~~ 57 (569)
T 2j5c_A 32 DRWIRTGGYQPTLWDFSTIQSFDSEY 57 (569)
T ss_dssp --------------------------
T ss_pred cccCCCCCCCCCcCCcccccCCCchh
Confidence 45699999999999999999986654
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=97.59 E-value=1.2e-05 Score=65.36 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=21.0
Q ss_pred cccccCCCCCCCCCchhhhhcccCC
Q 041701 57 NDNRRSANYQPSMWSYDYLQSLSNG 81 (83)
Q Consensus 57 ~v~RRSaNY~PSiWd~dfIqSL~s~ 81 (83)
.+.||+|||||++|+|+|||++.++
T Consensus 14 ~~~R~~~~~~ps~W~d~fl~~~~~~ 38 (550)
T 3m00_A 14 EIVRPVADFSPSLWGDQFLSFSIKN 38 (550)
T ss_dssp --CCCCCCCCCCTTTTTTSCCCCCH
T ss_pred ccCCCCCCCCcccccccccccCCcc
Confidence 3569999999999999999998654
No 3
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=97.59 E-value=1.1e-05 Score=68.26 Aligned_cols=26 Identities=42% Similarity=0.800 Sum_probs=12.1
Q ss_pred cccccCCCCCCCCCchhhhhcccCCC
Q 041701 57 NDNRRSANYQPSMWSYDYLQSLSNGY 82 (83)
Q Consensus 57 ~v~RRSaNY~PSiWd~dfIqSL~s~y 82 (83)
.+.||+|||+|++|+|+||||+.++|
T Consensus 22 ~~~Rrsany~Ps~W~~~~i~sl~~~~ 47 (817)
T 3sdr_A 22 GLIRRTANPHPNVWGYDLVHSLKSPY 47 (817)
T ss_dssp -------------CHHHHHHTCCCGG
T ss_pred CccCCCCCCCCCCCCCCeeeccCCcc
Confidence 35799999999999999999999876
No 4
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=97.54 E-value=1.9e-05 Score=63.81 Aligned_cols=26 Identities=50% Similarity=1.016 Sum_probs=12.2
Q ss_pred cccccCCCCCCCCCchhhhhcccCCC
Q 041701 57 NDNRRSANYQPSMWSYDYLQSLSNGY 82 (83)
Q Consensus 57 ~v~RRSaNY~PSiWd~dfIqSL~s~y 82 (83)
.+.||++||+||+||++||+|+.+.|
T Consensus 3 ~~~r~~~~~~ps~W~~~fl~s~~~~~ 28 (549)
T 1n1b_A 3 HQIRRSGNYQPALWDSNYIQSLNTPY 28 (549)
T ss_dssp ------------CCCHHHHHHCCCST
T ss_pred CcCCCCCCCCCCCCCCCcccCCCcch
Confidence 35699999999999999999987654
No 5
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=97.51 E-value=2.3e-05 Score=63.81 Aligned_cols=25 Identities=28% Similarity=0.655 Sum_probs=16.0
Q ss_pred cccccCCCCCCCCCchhhhhcccCCC
Q 041701 57 NDNRRSANYQPSMWSYDYLQSLSNGY 82 (83)
Q Consensus 57 ~v~RRSaNY~PSiWd~dfIqSL~s~y 82 (83)
.+.||+||||||+|+|+|||+ .++|
T Consensus 19 ~~~R~~~~~~ps~W~~~fl~~-~~~~ 43 (554)
T 3g4d_A 19 DEMRPKADFQPSIWGDLFLNC-PDKN 43 (554)
T ss_dssp ------CCCCCCTTTTTTTSC-CC--
T ss_pred CCCCCCCCCCccccccccccC-CCch
Confidence 356999999999999999999 5554
No 6
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=97.33 E-value=5.8e-05 Score=61.44 Aligned_cols=25 Identities=44% Similarity=0.911 Sum_probs=16.8
Q ss_pred ccccCCCCCCCCCchhhhhcccCCC
Q 041701 58 DNRRSANYQPSMWSYDYLQSLSNGY 82 (83)
Q Consensus 58 v~RRSaNY~PSiWd~dfIqSL~s~y 82 (83)
..|++|||+||+|+|+|||++.++|
T Consensus 13 ~~~~~~~~~ps~W~~~fl~~~~~~~ 37 (555)
T 3n0f_A 13 EARRSADYEPNSWDYDFLLSSDTDE 37 (555)
T ss_dssp ----CCCCCCCTTCHHHHTCC----
T ss_pred ccCCCCCCCcccccccccccCCcch
Confidence 3599999999999999999987654
No 7
>2wsc_K Photosystem I reaction center subunit PSAK, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Hordeum vulgare} PDB: 2wse_K* 2wsf_K* 3lw5_K*
Probab=26.28 E-value=14 Score=25.33 Aligned_cols=30 Identities=47% Similarity=0.454 Sum_probs=0.0
Q ss_pred Ccccc--cccccccccccCccccccccCCCcc
Q 041701 1 MAHQL--MTSVPALTRLQEPRSFISSLGSPSI 30 (83)
Q Consensus 1 ~~~~~--~~~~p~~~~l~~~~~~~~~~~~~~~ 30 (83)
||-++ +.|.|.|..|-+..+.......|..
T Consensus 1 ma~~~~~~~~~p~f~glr~~~~~~~~~~~~~~ 32 (131)
T 2wsc_K 1 MASQLSAMTSVPQFHGLRTYSSPRSMATLPSL 32 (131)
T ss_dssp --------------------------------
T ss_pred CcchhhccccCcccccccccCCcccccccccc
Confidence 78888 8899999877665544433333333
No 8
>2ys2_A Cytoplasmic tyrosine-protein kinase BMX; bone marrow tyrosine kinase gene in chromosome X protein, epithelial and endothelial tyrosine kinase, ETK; NMR {Homo sapiens}
Probab=12.43 E-value=79 Score=17.95 Aligned_cols=14 Identities=7% Similarity=0.181 Sum_probs=11.4
Q ss_pred cccCCCCCCCCCch
Q 041701 59 NRRSANYQPSMWSY 72 (83)
Q Consensus 59 ~RRSaNY~PSiWd~ 72 (83)
..+...|||..|.+
T Consensus 9 ~~~l~~YHPg~~~~ 22 (50)
T 2ys2_A 9 PHLLVKYHSGFFVD 22 (50)
T ss_dssp SCCSCCCCSSCEET
T ss_pred cchhhhcCCCcccC
Confidence 46789999999953
No 9
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=6.67 E-value=2.4e+02 Score=14.27 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=8.6
Q ss_pred ccCCCCCCCCCchh
Q 041701 60 RRSANYQPSMWSYD 73 (83)
Q Consensus 60 RRSaNY~PSiWd~d 73 (83)
||-.--.|-.||.|
T Consensus 4 rrrprkrplewded 17 (28)
T 3ukw_C 4 RRRPRKRPLEWDED 17 (28)
T ss_dssp ---CCCCCCCCCGG
T ss_pred ccccccCCcccccc
Confidence 55566778889876
No 10
>2e6i_A Tyrosine-protein kinase ITK/TSK; BTK, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=5.33 E-value=2e+02 Score=17.03 Aligned_cols=14 Identities=29% Similarity=0.729 Sum_probs=11.3
Q ss_pred cccCCCCCCCCCch
Q 041701 59 NRRSANYQPSMWSY 72 (83)
Q Consensus 59 ~RRSaNY~PSiWd~ 72 (83)
..+...|||..|.+
T Consensus 9 ~~ll~~yHPg~~~~ 22 (64)
T 2e6i_A 9 NSLVPKYHPNFWMD 22 (64)
T ss_dssp CSSCCEECSSCBCS
T ss_pred hhhhhhcCCCceeC
Confidence 46779999999954
Done!