Query 041701
Match_columns 83
No_of_seqs 106 out of 141
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 16:41:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041701.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041701hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a6sa_ a.61.1.4 (A:) GAG poly 10.2 42 0.003 20.0 0.8 16 57-72 38-53 (87)
2 d1fc2c_ a.8.1.1 (C:) Immunoglo 9.0 26 0.0019 18.6 -0.5 10 72-81 24-33 (44)
3 d1rwja_ a.138.1.1 (A:) Cytochr 8.6 39 0.0028 19.6 0.2 13 27-39 51-63 (81)
4 d1lp1a_ a.8.1.1 (A:) Immunoglo 6.2 42 0.003 18.4 -0.5 10 72-81 25-34 (55)
5 d1deeg_ a.8.1.1 (G:) Immunoglo 5.3 51 0.0037 17.8 -0.5 10 72-81 21-30 (51)
6 d1u5sb1 g.39.1.3 (B:72-102) Pi 4.8 65 0.0048 15.7 -0.2 14 35-48 7-22 (31)
7 d1g1pa_ g.3.6.1 (A:) Conotoxin 4.0 1.4E+02 0.01 14.3 0.7 8 36-43 7-14 (32)
8 d2dara2 g.39.1.3 (A:8-52) PDZ 3.7 1.9E+02 0.014 14.8 1.2 23 26-48 11-35 (45)
9 d1puia_ c.37.1.8 (A:) Probable 3.7 1.5E+02 0.011 16.4 0.8 28 6-33 2-30 (188)
10 d1pn2a2 d.38.1.4 (A:152-275) 2 3.6 1.4E+02 0.01 16.9 0.6 18 60-77 27-44 (124)
No 1
>d1a6sa_ a.61.1.4 (A:) GAG polyprotein M-domain {Rous sarcoma virus [TaxId: 11886]}
Probab=10.24 E-value=42 Score=19.99 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=13.7
Q ss_pred cccccCCCCCCCCCch
Q 041701 57 NDNRRSANYQPSMWSY 72 (83)
Q Consensus 57 ~v~RRSaNY~PSiWd~ 72 (83)
.+.+++.-|+|.+||.
T Consensus 38 ~l~sP~di~~pg~Wd~ 53 (87)
T d1a6sa_ 38 LLMSPSDLYSPGSWDP 53 (87)
T ss_dssp CTTCGGGGGSTTTTHH
T ss_pred CcCCchhhcCCCchHH
Confidence 3569999999999986
No 2
>d1fc2c_ a.8.1.1 (C:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=8.96 E-value=26 Score=18.56 Aligned_cols=10 Identities=30% Similarity=0.597 Sum_probs=7.4
Q ss_pred hhhhhcccCC
Q 041701 72 YDYLQSLSNG 81 (83)
Q Consensus 72 ~dfIqSL~s~ 81 (83)
..|||||.++
T Consensus 24 n~fI~SLkDD 33 (44)
T d1fc2c_ 24 NGFIQSLKDD 33 (44)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHhccC
Confidence 3588888776
No 3
>d1rwja_ a.138.1.1 (A:) Cytochrome c7 (cytochrome c551.5, PpcA) {Geobacter sulfurreducens, GSU1996 [TaxId: 35554]}
Probab=8.62 E-value=39 Score=19.64 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=10.4
Q ss_pred CCccccCCCCccc
Q 041701 27 SPSISKSNSNGFC 39 (83)
Q Consensus 27 ~~~~~~~~s~~~~ 39 (83)
-..+-++.|||+|
T Consensus 51 Ma~mekGksCGaC 63 (81)
T d1rwja_ 51 MADMDKGKSCGAC 63 (81)
T ss_dssp HHHHHTTCGGGGT
T ss_pred HHHHHCCCccccc
Confidence 3456789999999
No 4
>d1lp1a_ a.8.1.1 (A:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=6.19 E-value=42 Score=18.37 Aligned_cols=10 Identities=20% Similarity=0.271 Sum_probs=7.2
Q ss_pred hhhhhcccCC
Q 041701 72 YDYLQSLSNG 81 (83)
Q Consensus 72 ~dfIqSL~s~ 81 (83)
..|||||.++
T Consensus 25 n~fIqSLkDD 34 (55)
T d1lp1a_ 25 KAFIFSLWDD 34 (55)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHhccC
Confidence 3588888765
No 5
>d1deeg_ a.8.1.1 (G:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=5.27 E-value=51 Score=17.77 Aligned_cols=10 Identities=30% Similarity=0.597 Sum_probs=7.1
Q ss_pred hhhhhcccCC
Q 041701 72 YDYLQSLSNG 81 (83)
Q Consensus 72 ~dfIqSL~s~ 81 (83)
..|||||.++
T Consensus 21 n~fI~sLkdd 30 (51)
T d1deeg_ 21 NGFIQSLKDD 30 (51)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhhC
Confidence 3588888765
No 6
>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.81 E-value=65 Score=15.68 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=8.8
Q ss_pred CCccccCCc--ccccc
Q 041701 35 SNGFCASPI--QCMSA 48 (83)
Q Consensus 35 s~~~~~~~v--~C~~~ 48 (83)
-|++|..+| +|..+
T Consensus 7 ~C~~C~~PI~~~~vtA 22 (31)
T d1u5sb1 7 ICGACRRPIEGRVVNA 22 (31)
T ss_dssp EETTTTEECCSCEECC
T ss_pred chhhcCCchhhhHhhh
Confidence 377887776 45444
No 7
>d1g1pa_ g.3.6.1 (A:) Conotoxin {Conus ermineus, E VIa [TaxId: 55423]}
Probab=3.96 E-value=1.4e+02 Score=14.25 Aligned_cols=8 Identities=63% Similarity=1.427 Sum_probs=6.1
Q ss_pred CccccCCc
Q 041701 36 NGFCASPI 43 (83)
Q Consensus 36 ~~~~~~~v 43 (83)
-|+|++++
T Consensus 7 ygfcslpi 14 (32)
T d1g1pa_ 7 YGFCSLPI 14 (32)
T ss_dssp TSBCCCSS
T ss_pred ccceechh
Confidence 47888886
No 8
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.73 E-value=1.9e+02 Score=14.82 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=15.5
Q ss_pred CCCccccCCCCccccCCc--ccccc
Q 041701 26 GSPSISKSNSNGFCASPI--QCMSA 48 (83)
Q Consensus 26 ~~~~~~~~~s~~~~~~~v--~C~~~ 48 (83)
..|.-+++.-|++|..+| +|..+
T Consensus 11 ~~p~~~r~P~C~~C~~pI~g~~vtA 35 (45)
T d2dara2 11 HIPAGKRTPMCAHCNQVIRGPFLVA 35 (45)
T ss_dssp EECTTTCCCBBSSSCCBCCSCEEEE
T ss_pred ccCCCCCCeeccccCCcccCceeee
Confidence 346667778899997776 44443
No 9
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}
Probab=3.67 E-value=1.5e+02 Score=16.36 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=18.5
Q ss_pred cccccccccccCcc-ccccccCCCccccC
Q 041701 6 MTSVPALTRLQEPR-SFISSLGSPSISKS 33 (83)
Q Consensus 6 ~~~~p~~~~l~~~~-~~~~~~~~~~~~~~ 33 (83)
++|.|++.+||.-. -.|.=++.|-.-||
T Consensus 2 ~~~~~~~~~~p~~~~~~I~lvG~~NvGKS 30 (188)
T d1puia_ 2 VMSAPDIRHLPSDTGIEVAFAGRSNAGKS 30 (188)
T ss_dssp EEEESSGGGSSCSCSEEEEEEECTTSSHH
T ss_pred eeCCCChhHCCCccCCEEEEECCCCCCHH
Confidence 67889999998764 33554555555554
No 10
>d1pn2a2 d.38.1.4 (A:152-275) 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase {Yeast (Candida tropicalis) [TaxId: 5482]}
Probab=3.57 E-value=1.4e+02 Score=16.87 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=16.3
Q ss_pred ccCCCCCCCCCchhhhhc
Q 041701 60 RRSANYQPSMWSYDYLQS 77 (83)
Q Consensus 60 RRSaNY~PSiWd~dfIqS 77 (83)
|-+++|.|--+|.+|-+.
T Consensus 27 ~lSGD~NPiH~D~~~A~~ 44 (124)
T d1pn2a2 27 RLSGDRNPLHIDPNFAKG 44 (124)
T ss_dssp GGGSCCCGGGTCHHHHHH
T ss_pred HHHCCCcceEcCHHHHhh
Confidence 889999999999999765
Done!