BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041703
(146 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 82.8 bits (203), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 54/95 (56%)
Query: 4 GDSVWSIPPTTNFYNDWSSSHLFRIGDSIVFDFETELYNLMQVTALDYQTCKANNPIKVL 63
GD W P FY W++ FR+GD + FDF ++++ VT + CK NPI +
Sbjct: 8 GDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHM 67
Query: 64 NSGPATIVLNEQGVFYYLCNLSNYCDLGQKISIIV 98
+ P I+LN G YY+C + ++C +GQK+SI V
Sbjct: 68 TTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINV 102
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 75.9 bits (185), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 52/82 (63%)
Query: 17 YNDWSSSHLFRIGDSIVFDFETELYNLMQVTALDYQTCKANNPIKVLNSGPATIVLNEQG 76
Y W+SS+ F +GDS++F++ + +N++QV +++C +++P SG +I L G
Sbjct: 21 YAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPG 80
Query: 77 VFYYLCNLSNYCDLGQKISIIV 98
FY+LC + +C LGQK+ I V
Sbjct: 81 TFYFLCGIPGHCQLGQKVEIKV 102
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Query: 1 YWVGDSV-WSIPPTTNFYNDWSSSHLFRIGDSIVFDFETELYNLMQV-TALDYQTCK-AN 57
+ VGD+ WS+P + NFY+ W++ FR+GDS+ F+F +N+ ++ T + C N
Sbjct: 6 HIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVN 65
Query: 58 NPIKVLNSGPATIVLNEQGVFYYLCNLSNYCDLGQKISIIVHGKNS 103
+ V + P L+E G+ Y++C + +C GQK+SI V N+
Sbjct: 66 SDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINVVAANA 111
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 19 DWSSSHLFRIGDSIVFDFETELYNLMQVTALDYQTCKANNPIKVLNSGPATIVLNEQGVF 78
W FR GD ++F++ ++N++ V + TC KV SG I L +G
Sbjct: 17 SWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKL-PKGQS 75
Query: 79 YYLCNLSNYCDLGQKISI 96
Y++CN +C G KI++
Sbjct: 76 YFICNFPGHCQSGMKIAV 93
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 26 FRIGDSIVFDFETELYNLMQVTALDYQTCKANNPIKVLNSGPATIVLNEQGVFYYLCNLS 85
FR GD +VF + +N++ V Y +C A + +SG I L +G Y++C+
Sbjct: 19 FRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKL-TRGQNYFICSFP 77
Query: 86 NYCDLGQKISI 96
+C G KI+I
Sbjct: 78 GHCGGGMKIAI 88
>pdb|2INP|A Chain A, Structure Of The Phenol Hydroxylase-Regulatory Protein
Complex
pdb|2INP|B Chain B, Structure Of The Phenol Hydroxylase-Regulatory Protein
Complex
Length = 494
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 5 DSVWSIPPTTNFYNDWSSSHLFRIGDSIVFDFETELYNLMQV 46
D VW + +F++D S+ F +I F FE L NL+ V
Sbjct: 162 DRVWYLSVPKSFFDDARSAGPFEFLTAISFSFEYVLTNLLFV 203
>pdb|3U52|A Chain A, X-Ray Crystal Structure Of Xenon-Pressurized Phenol
Hydroxylase From Pseudomonas Sp. Ox1
pdb|3U52|B Chain B, X-Ray Crystal Structure Of Xenon-Pressurized Phenol
Hydroxylase From Pseudomonas Sp. Ox1
Length = 511
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 5 DSVWSIPPTTNFYNDWSSSHLFRIGDSIVFDFETELYNLMQV 46
D VW + +F++D S+ F +I F FE L NL+ V
Sbjct: 167 DRVWYLSVPKSFFDDARSAGPFEFLTAISFSFEYVLTNLLFV 208
>pdb|2INN|A Chain A, Structure Of The Phenol Hydroxyalse-Regulatory Protein
Complex
pdb|2INN|B Chain B, Structure Of The Phenol Hydroxyalse-Regulatory Protein
Complex
Length = 511
Score = 28.5 bits (62), Expect = 1.5, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 5 DSVWSIPPTTNFYNDWSSSHLFRIGDSIVFDFETELYNLMQV 46
D VW + +F++D S+ F +I F FE L NL+ V
Sbjct: 167 DRVWYLSVPKSFFDDARSAGPFEFLTAISFSFEYVLTNLLFV 208
>pdb|1A3W|A Chain A, Pyruvate Kinase From Saccharomyces Cerevisiae Complexed
With Fbp, Pg, Mn2+ And K+
pdb|1A3W|B Chain B, Pyruvate Kinase From Saccharomyces Cerevisiae Complexed
With Fbp, Pg, Mn2+ And K+
pdb|1A3X|A Chain A, Pyruvate Kinase From Saccharomyces Cerevisiae Complexed
With Pg, Mn2+ And K+
pdb|1A3X|B Chain B, Pyruvate Kinase From Saccharomyces Cerevisiae Complexed
With Pg, Mn2+ And K+
Length = 500
Score = 26.9 bits (58), Expect = 4.4, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 49 LDYQTCKANNPIKVLNSGPATIVLNEQGVFYYLCNLSNYCDL 90
L +T K N PI + + T V+ EQ + Y L NY D+
Sbjct: 331 LSGETAKGNYPINAVTTMAETAVIAEQAIAY----LPNYDDM 368
>pdb|1WI1|A Chain A, Solution Structure Of The Ph Domain Of Human Calcium-
Dependent Activator Protein For Secretion (Caps)
Length = 126
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 27 RIGDSIVFDFETELYNLMQVTALDYQTCKANNPIKVLNSGPAT 69
+ GD+++F + E ++ V A+ T +++ P+ SGP++
Sbjct: 83 KEGDTVIFASDDEQDRILWVQAMYRATGQSHKPVPPTQSGPSS 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,690,257
Number of Sequences: 62578
Number of extensions: 164969
Number of successful extensions: 289
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 10
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)