Query 041703
Match_columns 146
No_of_seqs 112 out of 860
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 16:44:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041703.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041703hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 100.0 8.3E-43 2.8E-47 260.9 6.4 103 1-103 6-111 (138)
2 1x9u_A Umecyanin; cupredoxin, 100.0 2.3E-40 7.8E-45 241.2 7.6 103 1-103 4-108 (116)
3 1ws8_A Mavicyanin; oxidized fo 100.0 7.3E-40 2.5E-44 236.1 6.5 102 1-103 5-107 (109)
4 2cbp_A Cucumber basic protein; 100.0 5E-38 1.7E-42 221.9 6.1 93 1-99 3-96 (96)
5 1f56_A Plantacyanin; cupredoxi 100.0 9.8E-34 3.3E-38 198.2 7.3 89 1-99 3-91 (91)
6 2cal_A Rusticyanin; iron respi 99.2 3.9E-11 1.3E-15 90.0 5.9 75 24-99 63-154 (154)
7 1qhq_A Protein (auracyanin); e 99.1 9.8E-11 3.4E-15 85.4 6.9 78 22-99 33-139 (140)
8 1bxv_A Plastocyanin; copper pr 99.1 2.1E-10 7.1E-15 77.1 5.6 70 23-99 20-91 (91)
9 1pmy_A Pseudoazurin; electron 98.8 1.2E-08 4.1E-13 73.8 8.6 72 23-101 22-95 (123)
10 1iuz_A Plastocyanin; electron 98.8 6.3E-09 2.2E-13 71.4 5.6 75 23-99 19-98 (98)
11 3erx_A Pseudoazurin; copper pr 98.8 1.4E-08 4.8E-13 73.7 7.6 71 23-100 22-94 (123)
12 1paz_A Pseudoazurin precursor; 98.8 1.6E-08 5.3E-13 73.2 7.7 71 23-100 22-94 (123)
13 3tu6_A Pseudoazurin (blue copp 98.8 2.3E-08 7.8E-13 73.0 7.8 74 22-102 23-98 (127)
14 1plc_A Plastocyanin; electron 98.8 2.2E-08 7.6E-13 68.4 7.2 75 23-99 18-99 (99)
15 2aan_A Auracyanin A; cupredoxi 98.8 4.1E-08 1.4E-12 71.4 8.8 76 23-99 36-139 (139)
16 3ef4_A Pseudoazurin, blue copp 98.7 4.1E-08 1.4E-12 71.5 7.6 72 23-101 23-96 (124)
17 1b3i_A PETE protein, protein ( 98.7 8.5E-08 2.9E-12 65.1 8.5 73 23-99 20-97 (97)
18 2gim_A Plastocyanin; beta shee 98.7 6.2E-08 2.1E-12 66.7 7.8 73 23-99 21-105 (106)
19 1kdj_A Plastocyanin; electron 98.6 4.8E-08 1.7E-12 66.9 6.1 75 23-99 18-102 (102)
20 1byp_A Protein (plastocyanin); 98.6 8.1E-08 2.8E-12 65.5 7.0 75 23-99 18-99 (99)
21 2plt_A Plastocyanin; electron 98.6 3.4E-08 1.1E-12 67.2 4.9 75 23-99 19-98 (98)
22 1pcs_A Plastocyanin; electron 98.5 3.1E-07 1.1E-11 62.4 6.4 75 23-99 20-98 (98)
23 4hci_A Cupredoxin 1; structura 98.2 1.3E-06 4.4E-11 60.0 5.1 66 23-99 29-100 (100)
24 1iko_P Ephrin-B2; greek KEY, g 98.0 2.3E-06 7.9E-11 65.9 2.1 78 25-102 25-142 (178)
25 1id2_A Amicyanin; beta barrel, 97.9 2.7E-05 9.2E-10 54.1 6.8 70 23-99 35-106 (106)
26 2ux6_A Pseudoazurin; type-1 co 97.9 3.1E-05 1.1E-09 55.5 6.5 69 23-100 22-92 (122)
27 3cvb_A Plastocyanin; cupredoxi 97.8 3.7E-05 1.3E-09 52.2 6.2 73 23-99 20-104 (105)
28 2ov0_A Amicyanin; beta-sandwic 97.8 6.6E-05 2.2E-09 51.8 6.5 65 24-99 35-105 (105)
29 3c75_A Amicyanin; copper prote 97.7 0.00014 4.7E-09 52.6 7.4 70 23-99 61-132 (132)
30 3ay2_A Lipid modified azurin p 97.6 9.3E-05 3.2E-09 56.2 6.3 75 24-99 60-166 (167)
31 1cuo_A Protein (azurin ISO-2); 97.6 0.00034 1.2E-08 50.7 8.9 76 23-99 19-128 (129)
32 2iaa_C Azurin; quinoprotein, t 97.3 0.0021 7.1E-08 46.5 9.1 74 25-99 20-127 (128)
33 2ccw_A Azurin II, AZN-2; elect 97.2 0.0016 5.5E-08 47.1 8.3 72 27-99 24-128 (129)
34 2vsm_B Ephrin-B2; developmenta 97.2 0.00014 4.8E-09 53.9 2.5 76 25-100 24-139 (140)
35 3d12_B Ephrin-B3; beta propell 97.2 0.00033 1.1E-08 52.0 4.1 74 25-99 23-140 (141)
36 1iby_A Nitrosocyanin; RED copp 97.1 0.0012 4.2E-08 45.5 6.7 65 24-99 40-111 (112)
37 1shx_A Ephrin-A5; ephrin signa 97.1 0.0013 4.3E-08 48.6 6.7 75 25-102 24-135 (138)
38 1nwp_A Azurin; electron transp 97.1 0.0012 4E-08 47.8 6.3 75 24-99 20-128 (128)
39 3czu_B Ephrin-A1; ATP-binding, 97.1 0.00087 3E-08 51.6 5.9 76 25-103 51-163 (182)
40 2x11_B Ephrin-A5; receptor-sig 97.0 0.0015 5.2E-08 50.1 6.4 75 25-102 53-164 (177)
41 2cua_A Protein (CUA); CUA cent 96.9 0.0054 1.8E-07 44.6 8.2 67 23-100 61-135 (135)
42 2wo3_B Ephrin-A2; transferase- 96.2 0.0064 2.2E-07 45.8 4.8 75 25-102 33-145 (157)
43 3fsa_A Azurin; copper, cupredo 95.3 0.19 6.5E-06 36.2 9.7 71 25-99 21-125 (125)
44 3hei_B Ephrin-A1; EPH receptor 94.6 0.074 2.5E-06 38.8 5.8 75 25-99 23-131 (132)
45 2dv6_A Nitrite reductase; elec 94.5 0.048 1.7E-06 45.7 5.4 73 23-102 56-134 (447)
46 1fwx_A Nitrous oxide reductase 94.2 0.13 4.3E-06 45.9 7.7 67 24-101 515-593 (595)
47 3s8f_B Cytochrome C oxidase su 94.2 0.21 7.2E-06 37.6 7.8 66 23-99 94-167 (168)
48 3sbq_A Nitrous-oxide reductase 94.1 0.14 4.8E-06 45.9 7.6 66 24-100 560-637 (638)
49 1oe1_A Dissimilatory copper-co 79.6 1.7 5.9E-05 34.9 4.0 34 69-102 286-320 (336)
50 1mzy_A Copper-containing nitri 78.3 2.5 8.4E-05 33.9 4.6 76 24-102 66-154 (333)
51 1oe1_A Dissimilatory copper-co 75.8 3.2 0.00011 33.3 4.5 76 24-102 67-154 (336)
52 1kbv_A ANIA, major outer membr 75.4 2.4 8.1E-05 34.2 3.7 76 24-102 72-158 (327)
53 1cyx_A CYOA; electron transpor 74.3 3 0.0001 32.3 3.8 29 69-99 84-115 (205)
54 3hb3_B Cytochrome C oxidase su 73.4 3.4 0.00011 33.7 4.1 33 68-102 231-266 (298)
55 2gsm_B Cytochrome C oxidase su 72.2 3.8 0.00013 32.6 4.1 32 68-101 213-247 (262)
56 2zoo_A Probable nitrite reduct 71.8 2.3 7.7E-05 35.4 2.8 76 24-102 62-148 (442)
57 1v54_B Cytochrome C oxidase po 70.6 3.6 0.00012 32.1 3.5 31 69-101 183-216 (227)
58 3l6w_A Hemocyanin 1; cupredoxi 70.2 3.1 0.00011 36.3 3.3 73 24-99 413-491 (491)
59 1mzy_A Copper-containing nitri 63.6 4.2 0.00014 32.6 2.7 34 69-102 286-320 (333)
60 2bw4_A Copper-containing nitri 62.2 8.9 0.0003 30.6 4.5 76 24-102 73-160 (340)
61 3gdc_A Multicopper oxidase; be 61.8 13 0.00043 29.2 5.2 78 24-102 68-156 (288)
62 3gdc_A Multicopper oxidase; be 61.6 3.5 0.00012 32.5 1.9 78 22-100 195-288 (288)
63 1sdd_A Coagulation factor V; c 59.2 1.2 4.1E-05 35.6 -1.3 77 23-101 216-301 (306)
64 1fft_B Ubiquinol oxidase; elec 57.0 5.6 0.00019 32.6 2.4 66 24-101 153-228 (315)
65 1yel_A AT1G16640; CESG, protei 56.1 7.3 0.00025 26.1 2.5 24 21-46 73-96 (104)
66 3kw8_A Laccase, putative coppe 49.7 10 0.00036 29.5 2.8 30 74-103 239-268 (276)
67 3iuw_A Activating signal coint 46.8 8.5 0.00029 25.7 1.6 16 24-39 36-52 (83)
68 1kbv_A ANIA, major outer membr 46.3 13 0.00043 29.8 2.8 34 69-102 275-309 (327)
69 2zwn_A Two-domain type laccase 43.7 22 0.00076 28.5 4.0 34 69-102 92-128 (339)
70 4i1k_A B3 domain-containing tr 42.8 18 0.00062 26.0 3.0 27 20-46 111-137 (146)
71 2z0t_A Putative uncharacterize 41.2 11 0.00036 26.3 1.4 11 24-34 32-42 (109)
72 2l8d_A Lamin-B receptor; DNA b 41.0 36 0.0012 21.7 3.8 46 23-73 7-54 (66)
73 2zoo_A Probable nitrite reduct 40.6 20 0.0007 29.5 3.4 34 69-102 265-299 (442)
74 1sdd_B Coagulation factor V; c 40.0 16 0.00055 32.0 2.7 32 69-100 296-327 (647)
75 2dig_A Lamin-B receptor; tudor 37.6 48 0.0016 21.2 4.0 46 23-73 10-57 (68)
76 3cg8_A Laccase; oxidoreductase 36.5 19 0.00066 29.1 2.5 31 73-103 279-309 (343)
77 2hzs_I RNA polymerase II media 35.7 0.45 1.5E-05 24.9 -4.8 19 23-41 4-22 (27)
78 2bw4_A Copper-containing nitri 33.7 36 0.0012 27.0 3.7 34 69-102 292-326 (340)
79 1zpu_A Iron transport multicop 33.2 62 0.0021 27.7 5.3 34 69-102 92-126 (534)
80 1xne_A Hypothetical protein PF 33.0 12 0.00042 26.1 0.7 12 24-35 33-44 (113)
81 2q9o_A Laccase-1; multicopper 32.8 47 0.0016 28.6 4.5 34 69-102 126-159 (559)
82 2qcp_X Cation efflux system pr 31.8 24 0.00083 22.8 2.0 15 24-38 52-66 (80)
83 2l55_A SILB,silver efflux prot 31.7 20 0.00067 23.4 1.5 20 20-39 42-61 (82)
84 2vb2_X Copper protein, cation 31.6 24 0.00083 23.3 2.0 16 23-38 59-74 (88)
85 1aoz_A Ascorbate oxidase; oxid 30.3 66 0.0023 27.5 5.0 34 69-102 92-125 (552)
86 3t9w_A Small laccase, multi-co 29.5 24 0.00082 27.9 1.9 31 73-103 260-290 (299)
87 3t6v_A Laccase; beta barrel, o 28.6 97 0.0033 26.3 5.7 78 25-102 38-131 (495)
88 3g5w_A Multicopper oxidase typ 27.7 58 0.002 25.9 3.9 34 69-102 239-278 (318)
89 2j5w_A Ceruloplasmin, ferroxid 27.6 39 0.0013 31.6 3.3 76 23-103 272-359 (1065)
90 2dv6_A Nitrite reductase; elec 27.0 45 0.0015 27.4 3.3 34 69-102 402-435 (447)
91 1ed7_A Chitinase A1, (CHBD-CHI 25.7 16 0.00055 21.1 0.2 16 19-34 1-16 (45)
92 3tas_A Small laccase, multi-co 25.7 36 0.0012 26.9 2.4 31 73-103 244-274 (313)
93 4he6_A Peptidase family U32; u 25.5 51 0.0017 21.2 2.7 18 22-39 26-43 (89)
94 1wid_A DNA-binding protein RAV 23.8 51 0.0017 22.9 2.6 18 22-39 88-105 (130)
95 2uxt_A Protein SUFI, SUFI; oxi 23.5 43 0.0015 27.9 2.5 73 25-100 53-138 (451)
96 2zwn_A Two-domain type laccase 22.9 87 0.003 24.9 4.2 34 69-102 240-279 (339)
97 2yev_B Cytochrome C oxidase su 28.1 18 0.00063 29.3 0.0 33 68-102 183-218 (337)
98 2r7e_B Coagulation factor VIII 20.9 66 0.0023 29.1 3.3 76 24-102 201-299 (770)
99 1hfu_A Laccase 1; oxidoreducta 20.2 1.5E+02 0.0053 24.9 5.4 78 25-102 37-130 (503)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=8.3e-43 Score=260.91 Aligned_cols=103 Identities=33% Similarity=0.704 Sum_probs=97.1
Q ss_pred CeecCCC-CCCCCCCCChhhccCCCceeeCCEEEEEecCCCceEEEE-ccccCCcccCCCCccccCCCCcEEEe-cccce
Q 041703 1 YWVGDSV-WSIPPTTNFYNDWSSSHLFRIGDSIVFDFETELYNLMQV-TALDYQTCKANNPIKVLNSGPATIVL-NEQGV 77 (146)
Q Consensus 1 y~VGg~~-W~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V-~~~~y~~C~~s~~~~~~~~G~~~v~l-~~~G~ 77 (146)
|+|||+. |+++++..+|++||++++|+|||+|+|+|..+.|+|+|| ++++|+.|+.++++..+++|+++|+| +++|+
T Consensus 6 ~~VGg~~GW~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L~~~~G~ 85 (138)
T 1jer_A 6 HIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERLDELGM 85 (138)
T ss_dssp EETTGGGCSSCCSSTTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEECCSSEE
T ss_pred EEECCcCcCcCCCCccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEeccCCcC
Confidence 7899999 999654478999999999999999999999999999999 99999999999999999999999999 99999
Q ss_pred EEEEcCCCCCCCCCCeEEEEeeCCCC
Q 041703 78 FYYLCNLSNYCDLGQKISIIVHGKNS 103 (146)
Q Consensus 78 ~YFiC~~~~HC~~GmKl~I~V~~~~~ 103 (146)
+||||++++||++||||+|+|....+
T Consensus 86 ~YFicg~~gHC~~GmKl~I~V~~~~~ 111 (138)
T 1jer_A 86 HYFVCTVGTHCSNGQKLSINVVAANA 111 (138)
T ss_dssp EEEECCSTTTGGGTCEEEEEEECCC-
T ss_pred EEEEcCCCCccccCCEEEEEEcCCCC
Confidence 99999999999999999999998774
No 2
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=100.00 E-value=2.3e-40 Score=241.17 Aligned_cols=103 Identities=36% Similarity=0.803 Sum_probs=95.0
Q ss_pred CeecCCC-CCCCCCCCChhhccCCCceeeCCEEEEEecCCCceEEEEccccCCcccCCCCccccCCCCcEEEecccceEE
Q 041703 1 YWVGDSV-WSIPPTTNFYNDWSSSHLFRIGDSIVFDFETELYNLMQVTALDYQTCKANNPIKVLNSGPATIVLNEQGVFY 79 (146)
Q Consensus 1 y~VGg~~-W~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~s~~~~~~~~G~~~v~l~~~G~~Y 79 (146)
|+|||+. |+++....+|++|+++++|+|||+|+|+|..+.|+|+||++++|+.|+.++++..+++|+++|+|+++|++|
T Consensus 4 ~~VG~~~GW~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~y 83 (116)
T 1x9u_A 4 YDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTGPQY 83 (116)
T ss_dssp EETTGGGCSSCCSSTTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCSEEECSSSEEEECCSCEEEE
T ss_pred EEECCcCcCcCCCCCcchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCccccCCCCeEEEECCCCCEE
Confidence 7899999 999744678999999999999999999999999999999999999999999998899999999999999999
Q ss_pred EEcCCCCCCCCCCeEEE-EeeCCCC
Q 041703 80 YLCNLSNYCDLGQKISI-IVHGKNS 103 (146)
Q Consensus 80 FiC~~~~HC~~GmKl~I-~V~~~~~ 103 (146)
|||++++||++||||+| +|...++
T Consensus 84 Fic~~~~HC~~Gmkl~In~V~~~~~ 108 (116)
T 1x9u_A 84 YICTVGDHCRVGQKLSINVVGAGGA 108 (116)
T ss_dssp EECCSTTTTTTTCEEEEEEECC---
T ss_pred EECCCCCccccCCEEEEEEECCCCC
Confidence 99999999999999999 7876653
No 3
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=100.00 E-value=7.3e-40 Score=236.14 Aligned_cols=102 Identities=35% Similarity=0.751 Sum_probs=94.8
Q ss_pred CeecCCC-CCCCCCCCChhhccCCCceeeCCEEEEEecCCCceEEEEccccCCcccCCCCccccCCCCcEEEecccceEE
Q 041703 1 YWVGDSV-WSIPPTTNFYNDWSSSHLFRIGDSIVFDFETELYNLMQVTALDYQTCKANNPIKVLNSGPATIVLNEQGVFY 79 (146)
Q Consensus 1 y~VGg~~-W~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~s~~~~~~~~G~~~v~l~~~G~~Y 79 (146)
|+|||+. |++++ ..+|++||++++|+|||+|+|+|..+.|+|+||++++|+.|+.++++..+++|+++|+|+++|++|
T Consensus 5 ~~VG~~~GW~~~~-~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~~~~~~G~~~v~L~~~G~~y 83 (109)
T 1ws8_A 5 HKVGDSTGWTTLV-PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPGTFY 83 (109)
T ss_dssp EETTGGGCSCSSS-CCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCSSEEEE
T ss_pred EEeCCCCCccCCC-CcChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCcccccCCCCEEEEECCCcCEE
Confidence 7899999 99954 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCeEEEEeeCCCC
Q 041703 80 YLCNLSNYCDLGQKISIIVHGKNS 103 (146)
Q Consensus 80 FiC~~~~HC~~GmKl~I~V~~~~~ 103 (146)
|||++++||++||||+|+|....+
T Consensus 84 Fic~~~gHC~~GmKl~I~V~~~~s 107 (109)
T 1ws8_A 84 FLCGIPGHCQLGQKVEIKVDPGSS 107 (109)
T ss_dssp EECCSTTTTTTTCEEEEEECC---
T ss_pred EECCCCCcccCCCEEEEEEcCCCC
Confidence 999999999999999999987653
No 4
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=5e-38 Score=221.85 Aligned_cols=93 Identities=31% Similarity=0.655 Sum_probs=89.4
Q ss_pred CeecCCC-CCCCCCCCChhhccCCCceeeCCEEEEEecCCCceEEEEccccCCcccCCCCccccCCCCcEEEecccceEE
Q 041703 1 YWVGDSV-WSIPPTTNFYNDWSSSHLFRIGDSIVFDFETELYNLMQVTALDYQTCKANNPIKVLNSGPATIVLNEQGVFY 79 (146)
Q Consensus 1 y~VGg~~-W~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~s~~~~~~~~G~~~v~l~~~G~~Y 79 (146)
|+|||+. |++ +|++||++++|++||+|+|+|.++.|+|+||++++|+.|+.++++..+++|+++|+| ++|++|
T Consensus 3 ~~VG~~~GW~~-----~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L-~~g~~y 76 (96)
T 2cbp_A 3 YVVGGSGGWTF-----NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKL-PKGQSY 76 (96)
T ss_dssp EETTGGGCSCS-----SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEEC-CSEEEE
T ss_pred EEECCcCCCcc-----ChhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCcccccCCCeEEEe-cCCCEE
Confidence 7899999 998 599999999999999999999999999999999999999999999889999999999 899999
Q ss_pred EEcCCCCCCCCCCeEEEEee
Q 041703 80 YLCNLSNYCDLGQKISIIVH 99 (146)
Q Consensus 80 FiC~~~~HC~~GmKl~I~V~ 99 (146)
|||++++||++||||+|+|+
T Consensus 77 Fic~~~~HC~~Gmkl~I~Vl 96 (96)
T 2cbp_A 77 FICNFPGHCQSGMKIAVNAL 96 (96)
T ss_dssp EECCSTTTGGGTCEEEEEEC
T ss_pred EEcCCCCccccCCEEEEEEC
Confidence 99999999999999999985
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=100.00 E-value=9.8e-34 Score=198.16 Aligned_cols=89 Identities=29% Similarity=0.576 Sum_probs=83.3
Q ss_pred CeecCCCCCCCCCCCChhhccCCCceeeCCEEEEEecCCCceEEEEccccCCcccCCCCccccCCCCcEEEecccceEEE
Q 041703 1 YWVGDSVWSIPPTTNFYNDWSSSHLFRIGDSIVFDFETELYNLMQVTALDYQTCKANNPIKVLNSGPATIVLNEQGVFYY 80 (146)
Q Consensus 1 y~VGg~~W~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~s~~~~~~~~G~~~v~l~~~G~~YF 80 (146)
|+| .|++ . ++|+++++|++||+|+|+|.++.|+|+||++++|+.|+.++++..+++|+++|+|+ +|++||
T Consensus 3 y~V---gW~~---~---~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L~-~g~~yF 72 (91)
T 1f56_A 3 YNI---GWSF---N---VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLT-RGQNYF 72 (91)
T ss_dssp EEE---ECSS---S---CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECC-SEEEEE
T ss_pred EEE---eCCC---C---CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCcccccCCCcEEEeC-CCCeEE
Confidence 566 4988 3 89999999999999999999999999999999999999999998899999999996 899999
Q ss_pred EcCCCCCCCCCCeEEEEee
Q 041703 81 LCNLSNYCDLGQKISIIVH 99 (146)
Q Consensus 81 iC~~~~HC~~GmKl~I~V~ 99 (146)
||++++||++||||+|+|.
T Consensus 73 ic~~~~HC~~Gmkl~I~v~ 91 (91)
T 1f56_A 73 ICSFPGHCGGGMKIAINAK 91 (91)
T ss_dssp ECCSTTTTTTTCEEEEEEC
T ss_pred EcCCCCccccCCEEEEEEC
Confidence 9999999999999999984
No 6
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.15 E-value=3.9e-11 Score=90.02 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=57.9
Q ss_pred CceeeCCEEEEEecCC----CceEEEEc-cccCCcccCCCCcc-------ccCCCC---c--EEEecccceEEEEcCCCC
Q 041703 24 HLFRIGDSIVFDFETE----LYNLMQVT-ALDYQTCKANNPIK-------VLNSGP---A--TIVLNEQGVFYYLCNLSN 86 (146)
Q Consensus 24 ~~f~vGD~L~F~y~~~----~HsV~~V~-~~~y~~C~~s~~~~-------~~~~G~---~--~v~l~~~G~~YFiC~~~~ 86 (146)
.++++||+|+|++.+. .|++..++ ...|..|.....+. ....|. . +|++ ++|.|||+|...+
T Consensus 63 i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~~g 141 (154)
T 2cal_A 63 LEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQIPG 141 (154)
T ss_dssp EEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCSTT
T ss_pred EEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECCCCC
Confidence 5889999999999652 69999985 56777786654331 223333 3 5678 9999999999999
Q ss_pred CCCCCCeEEEEee
Q 041703 87 YCDLGQKISIIVH 99 (146)
Q Consensus 87 HC~~GmKl~I~V~ 99 (146)
||+.||+..|.|.
T Consensus 142 H~~~GM~G~IiV~ 154 (154)
T 2cal_A 142 MAATGMFGKIVVK 154 (154)
T ss_dssp TGGGTCEEEEEEC
T ss_pred HHHCCCEEEEEEC
Confidence 9999999999884
No 7
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.13 E-value=9.8e-11 Score=85.40 Aligned_cols=78 Identities=22% Similarity=0.322 Sum_probs=54.1
Q ss_pred CCCceeeCCEEEEEecC-----CCceEEEEccc-cCCcc-----------------cCCCC---ccccCCC---CcEEEe
Q 041703 22 SSHLFRIGDSIVFDFET-----ELYNLMQVTAL-DYQTC-----------------KANNP---IKVLNSG---PATIVL 72 (146)
Q Consensus 22 ~~~~f~vGD~L~F~y~~-----~~HsV~~V~~~-~y~~C-----------------~~s~~---~~~~~~G---~~~v~l 72 (146)
...+++.||+|.|.|.+ ..|+++..... ++..+ +..+. ...+..| ..+|++
T Consensus 33 ~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~pG~~~~~~~~~ 112 (140)
T 1qhq_A 33 TSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSVTFRT 112 (140)
T ss_dssp SEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTTCTTEEEECCCBCTTEEEEEEEEC
T ss_pred CeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccccCccccccccccceeeCCCceeEEEEEe
Confidence 34689999999998865 47998887421 11110 00000 0122333 346788
Q ss_pred cccceEEEEcCCCCCCCCCCeEEEEee
Q 041703 73 NEQGVFYYLCNLSNYCDLGQKISIIVH 99 (146)
Q Consensus 73 ~~~G~~YFiC~~~~HC~~GmKl~I~V~ 99 (146)
+++|.|||+|++.+||+.|||+.|+|.
T Consensus 113 ~~~G~y~f~C~~~~H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 113 PAPGTYLYICTFPGHYLAGMKGTLTVT 139 (140)
T ss_dssp CSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred CCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence 899999999999999999999999986
No 8
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=99.06 E-value=2.1e-10 Score=77.08 Aligned_cols=70 Identities=16% Similarity=0.252 Sum_probs=52.2
Q ss_pred CCceeeCCEEEEEecC-CCceEEEEccccCCcccCCCCccccCCC-CcEEEecccceEEEEcCCCCCCCCCCeEEEEee
Q 041703 23 SHLFRIGDSIVFDFET-ELYNLMQVTALDYQTCKANNPIKVLNSG-PATIVLNEQGVFYYLCNLSNYCDLGQKISIIVH 99 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~-~~HsV~~V~~~~y~~C~~s~~~~~~~~G-~~~v~l~~~G~~YFiC~~~~HC~~GmKl~I~V~ 99 (146)
..++++||+|.|.+.. ..|+|.......+. .....+..| ..+++++++|.|+|+|. .||..||+..|.|.
T Consensus 20 ~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~-----~~~~~~~~g~~~~~~f~~~G~y~~~C~--~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 20 TIEIQAGDTVQWVNNKLAPHNVVVEGQPELS-----HKDLAFSPGETFEATFSEPGTYTYYCE--PHRGAGMVGKIVVQ 91 (91)
T ss_dssp EEEECTTCEEEEEECSSCCEEEEETTCGGGC-----EEEEECSTTCEEEEECCSCEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EEEECCCCEEEEEECCCCCcEEEEeCCCccC-----cccceeCCCCEEEEEeCCCEEEEEEeC--CCccCCCEEEEEEC
Confidence 4589999999999874 57999865432221 011223444 46788999999999999 89999999999984
No 9
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=98.85 E-value=1.2e-08 Score=73.83 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=53.1
Q ss_pred CCceeeCCEEEEEecCCCceEEEEccccCCcccCCCCc-cccCCC-CcEEEecccceEEEEcCCCCCCCCCCeEEEEeeC
Q 041703 23 SHLFRIGDSIVFDFETELYNLMQVTALDYQTCKANNPI-KVLNSG-PATIVLNEQGVFYYLCNLSNYCDLGQKISIIVHG 100 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~s~~~-~~~~~G-~~~v~l~~~G~~YFiC~~~~HC~~GmKl~I~V~~ 100 (146)
..++++||+|.|.+....|+|+... .|...+.. .....| ..+++++++|.|.|+|. .||.+||+..|+|..
T Consensus 22 ~i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~~ 94 (123)
T 1pmy_A 22 LVRLKPGDSIKFLPTDKGHNVETIK-----GMAPDGADYVKTTVGQEAVVKFDKEGVYGFKCA--PHYMMGMVALVVVGD 94 (123)
T ss_dssp EEEECTTCEEEEECSSSSCCCEECT-----TSSCTTCCCCBCCTTSCEEEECCSCEEEEEECS--TTTTTTCEEEEEESS
T ss_pred EEEECCCCEEEEEECCCCcEEEEec-----ccCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CccccCCEEEEEEcC
Confidence 3588999999999987789998652 12222111 111233 35889999999999998 599999999999985
Q ss_pred C
Q 041703 101 K 101 (146)
Q Consensus 101 ~ 101 (146)
.
T Consensus 95 ~ 95 (123)
T 1pmy_A 95 K 95 (123)
T ss_dssp C
T ss_pred C
Confidence 3
No 10
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.81 E-value=6.3e-09 Score=71.40 Aligned_cols=75 Identities=17% Similarity=0.161 Sum_probs=52.5
Q ss_pred CCceeeCCEEEEEecC-CCceEEEEcc---ccCCcccCCCCccccCCCC-cEEEecccceEEEEcCCCCCCCCCCeEEEE
Q 041703 23 SHLFRIGDSIVFDFET-ELYNLMQVTA---LDYQTCKANNPIKVLNSGP-ATIVLNEQGVFYYLCNLSNYCDLGQKISII 97 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~-~~HsV~~V~~---~~y~~C~~s~~~~~~~~G~-~~v~l~~~G~~YFiC~~~~HC~~GmKl~I~ 97 (146)
..++++||+|.|.... ..|+|...+. +.++.+..+........|. .+++++++|.|+|+|.. ||++||+..|.
T Consensus 19 ~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~~~~~tf~~~G~y~y~C~~--H~~~gM~G~I~ 96 (98)
T 1iuz_A 19 KISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVRKLSTPGVYGVYCEP--HAGAGMKMTIT 96 (98)
T ss_dssp EEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEEEECCSCEEEEEECTT--TGGGTCEEEEE
T ss_pred EEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccccccCCCCEEEEEcCCCEEEEEEchh--hccCCCEEEEE
Confidence 4688999999998775 4899876531 1222222111111334454 47889999999999995 99999999998
Q ss_pred ee
Q 041703 98 VH 99 (146)
Q Consensus 98 V~ 99 (146)
|.
T Consensus 97 V~ 98 (98)
T 1iuz_A 97 VQ 98 (98)
T ss_dssp EC
T ss_pred EC
Confidence 84
No 11
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.80 E-value=1.4e-08 Score=73.68 Aligned_cols=71 Identities=15% Similarity=0.092 Sum_probs=53.2
Q ss_pred CCceeeCCEEEEEecCCCceEEEEccccCCcccCCCCc-cccC-CCCcEEEecccceEEEEcCCCCCCCCCCeEEEEeeC
Q 041703 23 SHLFRIGDSIVFDFETELYNLMQVTALDYQTCKANNPI-KVLN-SGPATIVLNEQGVFYYLCNLSNYCDLGQKISIIVHG 100 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~s~~~-~~~~-~G~~~v~l~~~G~~YFiC~~~~HC~~GmKl~I~V~~ 100 (146)
..++++||+|.|.+....|+|...+. |...+.. .... +...+++++++|.|+|+|. .||.+||+-.|.|..
T Consensus 22 ~i~V~~GdtV~f~~~~~~H~v~~~~~-----~~P~g~~~f~~~pg~t~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V~~ 94 (123)
T 3erx_A 22 FVRAEPGDVINFVPTDKSHNVEAIKE-----ILPEGVESFKSKINESYTLTVTEPGLYGVKCT--PHFGMGMVGLVQVGD 94 (123)
T ss_dssp EEEECTTEEEEEEESSTTCCCEECTT-----SSCTTCCCCBCCTTCCEEEEECSCEEEEEECG--GGTTTTCEEEEEESS
T ss_pred EEEECCCCEEEEEECCCCceEEEcCC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEECC
Confidence 45899999999999877899976431 2221111 1112 2346899999999999999 799999999999986
No 12
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=98.80 E-value=1.6e-08 Score=73.24 Aligned_cols=71 Identities=13% Similarity=0.104 Sum_probs=52.4
Q ss_pred CCceeeCCEEEEEecCCCceEEEEccccCCcccCCCCc-cccCCC-CcEEEecccceEEEEcCCCCCCCCCCeEEEEeeC
Q 041703 23 SHLFRIGDSIVFDFETELYNLMQVTALDYQTCKANNPI-KVLNSG-PATIVLNEQGVFYYLCNLSNYCDLGQKISIIVHG 100 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~s~~~-~~~~~G-~~~v~l~~~G~~YFiC~~~~HC~~GmKl~I~V~~ 100 (146)
..++++||+|.|.+....|+|+... .|...+.. .....| ..+++++++|.|+|+|. .||.+||+..|+|..
T Consensus 22 ~i~V~~GdtV~f~~~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~~ 94 (123)
T 1paz_A 22 YIKANPGDTVTFIPVDKGHNVESIK-----DMIPEGAEKFKSKINENYVLTVTQPGAYLVKCT--PHYAMGMIALIAVGD 94 (123)
T ss_dssp EEEECTTCEEEEEESSSSCCCEECT-----TCSCTTCCCCBCCTTCCEEEECCSCEEEEEECT--TTGGGTCEEEEEESS
T ss_pred EEEECCCCEEEEEECCCCeEEEEec-----ccCCCCccceecCCCCEEEEEeCCCEEEEEEeC--CcccCCCEEEEEEcC
Confidence 4688999999999987789997641 12221110 111223 35789999999999998 599999999999986
No 13
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.77 E-value=2.3e-08 Score=72.96 Aligned_cols=74 Identities=18% Similarity=0.206 Sum_probs=54.2
Q ss_pred CCCceeeCCEEEEEecCCCceEEEEccccCCcccCCCCc-cccC-CCCcEEEecccceEEEEcCCCCCCCCCCeEEEEee
Q 041703 22 SSHLFRIGDSIVFDFETELYNLMQVTALDYQTCKANNPI-KVLN-SGPATIVLNEQGVFYYLCNLSNYCDLGQKISIIVH 99 (146)
Q Consensus 22 ~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~s~~~-~~~~-~G~~~v~l~~~G~~YFiC~~~~HC~~GmKl~I~V~ 99 (146)
+..++++||+|.|.+....|+|...+. +...... .... +...+++++++|.|+|+|. .||..||+..|.|.
T Consensus 23 ~~i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P~g~~~f~s~pGet~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V~ 95 (127)
T 3tu6_A 23 AVIRAQPGDTVTFVAKDKGHNSALMKG-----GAPEGAETWKGKINEEITVTLSKPGVYMYQCA--PHVGMGMIGAIVVG 95 (127)
T ss_dssp SEEEECTTCEEEEECSSSSCCCEECTT-----CSCTTCCCCBCCTTCCCEEECCSCEEEEEECT--TTGGGTCEEEEEES
T ss_pred CEEEECCCCEEEEEECCCCceEEEccC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEEC
Confidence 345899999999999877899976532 1111111 0111 2346899999999999999 69999999999998
Q ss_pred CCC
Q 041703 100 GKN 102 (146)
Q Consensus 100 ~~~ 102 (146)
...
T Consensus 96 ~~~ 98 (127)
T 3tu6_A 96 EPA 98 (127)
T ss_dssp SCT
T ss_pred cCC
Confidence 743
No 14
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.76 E-value=2.2e-08 Score=68.43 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=52.2
Q ss_pred CCceeeCCEEEEEecCC-CceEEEEccc---cCCcccCC--CCccccCCCC-cEEEecccceEEEEcCCCCCCCCCCeEE
Q 041703 23 SHLFRIGDSIVFDFETE-LYNLMQVTAL---DYQTCKAN--NPIKVLNSGP-ATIVLNEQGVFYYLCNLSNYCDLGQKIS 95 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~~-~HsV~~V~~~---~y~~C~~s--~~~~~~~~G~-~~v~l~~~G~~YFiC~~~~HC~~GmKl~ 95 (146)
..++++||+|.|..... .|++...+.. ..+.+... .....+..|. .+++++++|.|.|+|. .||++||+..
T Consensus 18 ~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~tf~~~G~y~~~C~--~H~~~gM~G~ 95 (99)
T 1plc_A 18 EFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFEVALSNKGEYSFYCS--PHQGAGMVGK 95 (99)
T ss_dssp EEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTCEEEEECCSCEEEEEECG--GGTTTTCEEE
T ss_pred EEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCccccCCCCEEEEEECCCceEEEEcC--CCcccCCEEE
Confidence 46899999999987753 7999876421 11212100 0001234443 5789999999999999 8999999999
Q ss_pred EEee
Q 041703 96 IIVH 99 (146)
Q Consensus 96 I~V~ 99 (146)
|.|.
T Consensus 96 i~V~ 99 (99)
T 1plc_A 96 VTVN 99 (99)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9984
No 15
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=98.75 E-value=4.1e-08 Score=71.35 Aligned_cols=76 Identities=16% Similarity=0.317 Sum_probs=54.0
Q ss_pred CCceeeCCEEEEEecCC----CceEEEEccc------------------cCCcccCCCCc---cccCCCC-cE--EEecc
Q 041703 23 SHLFRIGDSIVFDFETE----LYNLMQVTAL------------------DYQTCKANNPI---KVLNSGP-AT--IVLNE 74 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~~----~HsV~~V~~~------------------~y~~C~~s~~~---~~~~~G~-~~--v~l~~ 74 (146)
..+++.||+|.|.|.+. .|+++..... +|..|...+.+ ..+..|. .+ |++++
T Consensus 36 ~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~t~~l~pGet~~v~f~~~~ 115 (139)
T 2aan_A 36 ELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPADKSNIIAESPLANGNETVEVTFTAPA 115 (139)
T ss_dssp EEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCSCCTTEEEECCCBCTTCEEEEEEECCS
T ss_pred eEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccccCcccccccccccccCCCCEEEEEEECCC
Confidence 35789999999988653 6999887522 45555432211 1234443 34 44558
Q ss_pred cceEEEEcCCCCCCCCCCeEEEEee
Q 041703 75 QGVFYYLCNLSNYCDLGQKISIIVH 99 (146)
Q Consensus 75 ~G~~YFiC~~~~HC~~GmKl~I~V~ 99 (146)
+|.|+|+|.+.+||. ||+..|.|.
T Consensus 116 pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 116 AGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp SEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred CeEEEEEcCCCChHH-cCEEEEEEC
Confidence 999999999999999 999999884
No 16
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.71 E-value=4.1e-08 Score=71.47 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=54.0
Q ss_pred CCceeeCCEEEEEecCCCceEEEEccccCCcccCCCCc-cccCCC-CcEEEecccceEEEEcCCCCCCCCCCeEEEEeeC
Q 041703 23 SHLFRIGDSIVFDFETELYNLMQVTALDYQTCKANNPI-KVLNSG-PATIVLNEQGVFYYLCNLSNYCDLGQKISIIVHG 100 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~s~~~-~~~~~G-~~~v~l~~~G~~YFiC~~~~HC~~GmKl~I~V~~ 100 (146)
..++++||+|.|.+....|+|...+. +...+.. .....| ..+++++++|.|.|+|. .||..||+-.|+|..
T Consensus 23 ~i~V~~GDTV~f~n~~~~Hnv~~~~~-----~~p~g~~~~~~~pg~t~s~TF~~~G~y~Y~C~--~H~~~GM~G~I~V~~ 95 (124)
T 3ef4_A 23 FVKVEAGDTVKFVPTDKSHNAESVRE-----VWPEGVAPVKGGFSKEVVFNAEKEGLYVLKCA--PHYGMGMVVLVQVGK 95 (124)
T ss_dssp EEEECTTCEEEEECSSSSCCCEECTT-----TSCTTSCCCBCCTTCCEEEECCSSEEEEEECT--TTGGGTCEEEEEESS
T ss_pred EEEECCCCEEEEEECCCCccEEEeCC-----cCCCCccccccCCCCEEEEEeCCCeEEEEEcC--CCCcCCCEEEEEECC
Confidence 46889999999999878899986531 2222211 112233 36899999999999997 799999999999986
Q ss_pred C
Q 041703 101 K 101 (146)
Q Consensus 101 ~ 101 (146)
.
T Consensus 96 p 96 (124)
T 3ef4_A 96 P 96 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 17
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.70 E-value=8.5e-08 Score=65.14 Aligned_cols=73 Identities=15% Similarity=0.227 Sum_probs=51.5
Q ss_pred CCceeeCCEEEEEecC-CCceEEEEcccc---CCcccCCCCccccCCC-CcEEEecccceEEEEcCCCCCCCCCCeEEEE
Q 041703 23 SHLFRIGDSIVFDFET-ELYNLMQVTALD---YQTCKANNPIKVLNSG-PATIVLNEQGVFYYLCNLSNYCDLGQKISII 97 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~-~~HsV~~V~~~~---y~~C~~s~~~~~~~~G-~~~v~l~~~G~~YFiC~~~~HC~~GmKl~I~ 97 (146)
..++++||+|.|.... ..|++....... ...+.... .....| ..+++++++|.|.|+|. .||++||+..|.
T Consensus 20 ~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~tf~~~G~y~y~C~--~H~~~gM~G~i~ 95 (97)
T 1b3i_A 20 ALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTK--LAIAPGSFYSVTLGTPGTYSFYCT--PHRGAGMVGTIT 95 (97)
T ss_dssp EEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCC--CCCSCSCCEEEECCSCSEEEEECS--STTTTTCEEEEE
T ss_pred EEEECCCCEEEEEECCCCCeEEEEeCCCCccccccccccc--eecCCCCEEEEEeCCCeEEEEEcc--ChhhcCCEEEEE
Confidence 3588999999999765 379998764221 00111111 122333 46888999999999999 899999999998
Q ss_pred ee
Q 041703 98 VH 99 (146)
Q Consensus 98 V~ 99 (146)
|.
T Consensus 96 V~ 97 (97)
T 1b3i_A 96 VE 97 (97)
T ss_dssp EC
T ss_pred EC
Confidence 84
No 18
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.69 E-value=6.2e-08 Score=66.72 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=50.7
Q ss_pred CCceeeCCEEEEEecC-CCceEEEEccccCC-----c--ccCCCCccccCCC-CcEEEe---cccceEEEEcCCCCCCCC
Q 041703 23 SHLFRIGDSIVFDFET-ELYNLMQVTALDYQ-----T--CKANNPIKVLNSG-PATIVL---NEQGVFYYLCNLSNYCDL 90 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~-~~HsV~~V~~~~y~-----~--C~~s~~~~~~~~G-~~~v~l---~~~G~~YFiC~~~~HC~~ 90 (146)
..++++||+|.|.... ..|++......... . +.. +. .....| ..++++ +++|.|+|+|. .||++
T Consensus 21 ~i~v~~Gd~V~~~n~~~~~H~~~~~~~~~~~~~g~~~~~~~~-~~-~~~~pG~~~~~~f~~~~~~G~y~y~C~--~H~~~ 96 (106)
T 2gim_A 21 KLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSH-KQ-LLMSPGQSTSTTFPADAPAGEYTFYCE--PHRGA 96 (106)
T ss_dssp EEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCB-CS-CCCSTTCEEEEECCTTCCSEEEEEECT--TTGGG
T ss_pred EEEECCCCEEEEEECCCCCceEEEeCCCCcccccccchhccc-cc-eeeCCCCEEEEEEecCCCCceEEEEeC--Chhhc
Confidence 4588999999998765 47998865321100 0 001 11 123334 357888 89999999999 89999
Q ss_pred CCeEEEEee
Q 041703 91 GQKISIIVH 99 (146)
Q Consensus 91 GmKl~I~V~ 99 (146)
||+..|.|.
T Consensus 97 GM~G~i~V~ 105 (106)
T 2gim_A 97 GMVGKITVA 105 (106)
T ss_dssp TCEEEEEEC
T ss_pred CcEEEEEEc
Confidence 999999985
No 19
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.64 E-value=4.8e-08 Score=66.94 Aligned_cols=75 Identities=11% Similarity=0.109 Sum_probs=51.7
Q ss_pred CCceeeCCEEEEEecC-CCceEEEEccccCC----ccc----CCCCccccCCC-CcEEEecccceEEEEcCCCCCCCCCC
Q 041703 23 SHLFRIGDSIVFDFET-ELYNLMQVTALDYQ----TCK----ANNPIKVLNSG-PATIVLNEQGVFYYLCNLSNYCDLGQ 92 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~-~~HsV~~V~~~~y~----~C~----~s~~~~~~~~G-~~~v~l~~~G~~YFiC~~~~HC~~Gm 92 (146)
..++++||+|.|.... ..|++.......++ .|. ..........| ..+++++++|.|.|+|. .||++||
T Consensus 18 ~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~tf~~~G~y~y~C~--~H~~~gM 95 (102)
T 1kdj_A 18 SITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEPSFKAKVSTPGTYTFYCT--PHKSANM 95 (102)
T ss_dssp EEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBCEEEECCCSCEEEEEECS--TTGGGTC
T ss_pred EEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccceecCCCCEEEEEeCCCeEEEEEeC--CCcccCC
Confidence 3588999999998765 47998865322221 111 00001123334 35788899999999999 9999999
Q ss_pred eEEEEee
Q 041703 93 KISIIVH 99 (146)
Q Consensus 93 Kl~I~V~ 99 (146)
+..|.|.
T Consensus 96 ~G~i~V~ 102 (102)
T 1kdj_A 96 KGTLTVK 102 (102)
T ss_dssp EEEEEEC
T ss_pred eEEEEEC
Confidence 9999984
No 20
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.64 E-value=8.1e-08 Score=65.47 Aligned_cols=75 Identities=16% Similarity=0.207 Sum_probs=51.9
Q ss_pred CCceeeCCEEEEEecCC-CceEEEEccc---cCCcccCC--CCccccCCCC-cEEEecccceEEEEcCCCCCCCCCCeEE
Q 041703 23 SHLFRIGDSIVFDFETE-LYNLMQVTAL---DYQTCKAN--NPIKVLNSGP-ATIVLNEQGVFYYLCNLSNYCDLGQKIS 95 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~~-~HsV~~V~~~---~y~~C~~s--~~~~~~~~G~-~~v~l~~~G~~YFiC~~~~HC~~GmKl~ 95 (146)
..++++||+|.|+.... .|++...... .++.+... .....+..|. .+++++++|.|.|+|. .||++||+..
T Consensus 18 ~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~~~~~G~~~~~~f~~~G~y~~~C~--~H~~~gM~G~ 95 (99)
T 1byp_A 18 DLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEYSVTLTEKGTYKFYCA--PHAGAGMVGK 95 (99)
T ss_dssp EEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEEEEEECSCEEEEEECG--GGTTTTCEEE
T ss_pred EEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccceeeCCCCEEEEEeCCCcEEEEEcC--CccccCCEEE
Confidence 35789999999987753 7998765421 12222110 0001234443 5788999999999999 8999999999
Q ss_pred EEee
Q 041703 96 IIVH 99 (146)
Q Consensus 96 I~V~ 99 (146)
|.|.
T Consensus 96 i~V~ 99 (99)
T 1byp_A 96 VTVN 99 (99)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9984
No 21
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.63 E-value=3.4e-08 Score=67.18 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=51.9
Q ss_pred CCceeeCCEEEEEecCC-CceEEEEcc---ccCCcccCCCCccccCCCC-cEEEecccceEEEEcCCCCCCCCCCeEEEE
Q 041703 23 SHLFRIGDSIVFDFETE-LYNLMQVTA---LDYQTCKANNPIKVLNSGP-ATIVLNEQGVFYYLCNLSNYCDLGQKISII 97 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~~-~HsV~~V~~---~~y~~C~~s~~~~~~~~G~-~~v~l~~~G~~YFiC~~~~HC~~GmKl~I~ 97 (146)
..++++||+|.|..... .|++..... ..++.+........+..|. .+++++++|.|.|+|. .||++||+..|.
T Consensus 19 ~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~~~~pG~~~~~tf~~~G~y~y~C~--~H~~~gM~G~i~ 96 (98)
T 2plt_A 19 TLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYSVKLTAAGEYGYYCE--PHQGAGMVGKII 96 (98)
T ss_dssp EEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTCEEEEECCSCEEEEEECG--GGGGGTCEEEEE
T ss_pred EEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccceecCCCCEEEEEeCCCeEEEEEcC--CccccCCeEEEE
Confidence 35889999999987753 799876532 1122211111012234444 4788999999999999 799999999999
Q ss_pred ee
Q 041703 98 VH 99 (146)
Q Consensus 98 V~ 99 (146)
|.
T Consensus 97 V~ 98 (98)
T 2plt_A 97 VQ 98 (98)
T ss_dssp EC
T ss_pred EC
Confidence 84
No 22
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.48 E-value=3.1e-07 Score=62.42 Aligned_cols=75 Identities=15% Similarity=0.202 Sum_probs=50.5
Q ss_pred CCceeeCCEEEEEecC-CCceEEEEccccC--CcccCCCCccccCCCC-cEEEecccceEEEEcCCCCCCCCCCeEEEEe
Q 041703 23 SHLFRIGDSIVFDFET-ELYNLMQVTALDY--QTCKANNPIKVLNSGP-ATIVLNEQGVFYYLCNLSNYCDLGQKISIIV 98 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~-~~HsV~~V~~~~y--~~C~~s~~~~~~~~G~-~~v~l~~~G~~YFiC~~~~HC~~GmKl~I~V 98 (146)
..++++||+|.|.... ..|++...+...- +.............|. .+++++++|.|.|+|. .||.+||+..|.|
T Consensus 20 ~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~~~~~pG~~~~~tf~~~G~y~~~C~--~H~~~gM~G~i~V 97 (98)
T 1pcs_A 20 TVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGESFTSTFTEPGTYTYYCE--PHRGAGMVGKVVV 97 (98)
T ss_dssp EEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTTCEEEEECCSCEEEEEECG--GGTTTTCEEEEEE
T ss_pred EEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccccccCCCCEEEEEcCCCeEEEEEcC--CccccCCeEEEEE
Confidence 3588999999998765 4799876531100 0000100011233443 5788899999999999 7999999999998
Q ss_pred e
Q 041703 99 H 99 (146)
Q Consensus 99 ~ 99 (146)
.
T Consensus 98 ~ 98 (98)
T 1pcs_A 98 E 98 (98)
T ss_dssp C
T ss_pred C
Confidence 4
No 23
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=98.24 E-value=1.3e-06 Score=59.98 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=45.1
Q ss_pred CCceeeCCEEEEEecCC---CceEEEEccccCCcccCCCCccccCCCC---cEEEecccceEEEEcCCCCCCCCCCeEEE
Q 041703 23 SHLFRIGDSIVFDFETE---LYNLMQVTALDYQTCKANNPIKVLNSGP---ATIVLNEQGVFYYLCNLSNYCDLGQKISI 96 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~~---~HsV~~V~~~~y~~C~~s~~~~~~~~G~---~~v~l~~~G~~YFiC~~~~HC~~GmKl~I 96 (146)
..++++||+|.|.+.+. .|++..-. ... ......|. ..++++++|.|.|+|. .||..||+-.|
T Consensus 29 ~i~v~~G~tV~~~~~n~d~~~H~~~~~~-~~~--------~~~~~pg~~~~~~~t~~~~G~Y~y~C~--~H~~~gM~G~i 97 (100)
T 4hci_A 29 VITIPINESTTLLLKNKGKSEHTFTIKK-LGI--------DVVVESGKEKNITVKPKSAGTYELICR--YHLLKGMEGKV 97 (100)
T ss_dssp EEEECTTSCEEEEEEECSSSCEEEEEGG-GTE--------EEEECTTCEEEEEECCCSCEEEEEECT--TTGGGTCEEEE
T ss_pred EEEECCCCEEEEEEEcCCCceEEEEEec-CCc--------ceeecCCcceeEEEecccCceEEEECc--cccCCCCEEEE
Confidence 35788999999987542 46654321 110 11223333 3566789999999997 69999999999
Q ss_pred Eee
Q 041703 97 IVH 99 (146)
Q Consensus 97 ~V~ 99 (146)
.|.
T Consensus 98 ~Ve 100 (100)
T 4hci_A 98 IVK 100 (100)
T ss_dssp EEC
T ss_pred EEC
Confidence 984
No 24
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=97.97 E-value=2.3e-06 Score=65.90 Aligned_cols=78 Identities=15% Similarity=0.281 Sum_probs=52.2
Q ss_pred ceeeCCEEEEE---ecC------CCceEEEEccccCCcccCCC-Cc--cccC--CCCcEEEec-------------ccc-
Q 041703 25 LFRIGDSIVFD---FET------ELYNLMQVTALDYQTCKANN-PI--KVLN--SGPATIVLN-------------EQG- 76 (146)
Q Consensus 25 ~f~vGD~L~F~---y~~------~~HsV~~V~~~~y~~C~~s~-~~--~~~~--~G~~~v~l~-------------~~G- 76 (146)
.+++||.|-|. |+. ..+.|++|++++|+.|+... .. ..-. .+...|++. ++|
T Consensus 25 ~v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~ 104 (178)
T 1iko_P 25 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNK 104 (178)
T ss_dssp CCCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTE
T ss_pred EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 34579999874 532 24789999999999999863 21 1111 122233321 356
Q ss_pred eEEEEcCC-----------CCCCCC-CCeEEEEeeCCC
Q 041703 77 VFYYLCNL-----------SNYCDL-GQKISIIVHGKN 102 (146)
Q Consensus 77 ~~YFiC~~-----------~~HC~~-GmKl~I~V~~~~ 102 (146)
.|||||.- +++|.. +|||.|.|....
T Consensus 105 ~YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~ 142 (178)
T 1iko_P 105 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDA 142 (178)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC-
T ss_pred ceEEEecCCcccccccccCCCccccceeEEEEEeecCC
Confidence 99999985 379986 899999997655
No 25
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=97.93 E-value=2.7e-05 Score=54.08 Aligned_cols=70 Identities=14% Similarity=0.195 Sum_probs=46.5
Q ss_pred CCceeeCCEEEEEecCC-CceEEEEccccCCcccCCCCccccCCCC-cEEEecccceEEEEcCCCCCCCCCCeEEEEee
Q 041703 23 SHLFRIGDSIVFDFETE-LYNLMQVTALDYQTCKANNPIKVLNSGP-ATIVLNEQGVFYYLCNLSNYCDLGQKISIIVH 99 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~~-~HsV~~V~~~~y~~C~~s~~~~~~~~G~-~~v~l~~~G~~YFiC~~~~HC~~GmKl~I~V~ 99 (146)
..++++||+|.|..... .|+|...+... -.-.+.. ..+..|. .+++++++|.|.|+|.. |. ||+..|.|.
T Consensus 35 ~i~V~~G~tV~~~N~d~~~H~v~~~~~~~-~~~~~~s--~~l~~g~~~~~tf~~~G~y~~~C~~--H~--~M~G~I~V~ 106 (106)
T 1id2_A 35 EVTIKAGETVYWVNGEVMPHNVAFKKGIV-GEDAFRG--EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGKVIVE 106 (106)
T ss_dssp EEEECTTCEEEEEECSSSCBCCEECTTTS-SSSCEEC--CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred EEEECCCCEEEEEECCCCcEEEEEeCCCC-Ccccccc--cccCCCCEEEEEeCCCEEEEEEeCC--CC--CCEEEEEEC
Confidence 34788999999986543 69987543210 0000000 1233343 47889999999999997 87 999999883
No 26
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=97.87 E-value=3.1e-05 Score=55.55 Aligned_cols=69 Identities=13% Similarity=0.038 Sum_probs=49.5
Q ss_pred CCceeeCCEEEEEecCCCceEEEEccccCCcccCCCCc-cccCCC-CcEEEecccceEEEEcCCCCCCCCCCeEEEEeeC
Q 041703 23 SHLFRIGDSIVFDFETELYNLMQVTALDYQTCKANNPI-KVLNSG-PATIVLNEQGVFYYLCNLSNYCDLGQKISIIVHG 100 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~s~~~-~~~~~G-~~~v~l~~~G~~YFiC~~~~HC~~GmKl~I~V~~ 100 (146)
..++++||+|.|......|+|+.... +-..... .....| ..+++++++|.|.|+|.. |+. |+..|.|..
T Consensus 22 ~i~V~~GdtV~f~n~d~~H~v~~~~~-----~~p~~~~~~~~~~g~t~~~tF~~~G~y~y~C~~--H~~--M~G~I~V~~ 92 (122)
T 2ux6_A 22 SLKVAPGDTVTFIPTDKGHNVETIKG-----MIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP--HPF--MVGVVQVGD 92 (122)
T ss_dssp EEEECTTEEEEEEESSSSCCCEECTT-----CSCTTCCCCBCCTTCCEEEEECSCEEEEEEETT--EEE--EEEEEEESS
T ss_pred EEEECCCCEEEEEECCCCcEEEEccc-----ccCCCcceeecCCCCEEEEEeCCCEEEEEEeCC--Ccc--CEEEEEEeC
Confidence 35788999999998777899976531 1111111 011223 358899999999999987 887 999999976
No 27
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=97.84 E-value=3.7e-05 Score=52.24 Aligned_cols=73 Identities=15% Similarity=0.181 Sum_probs=48.8
Q ss_pred CCceeeCCEEEEEecC-CCceEEEEccccCCccc-------CCCCccccCCCC-cEEEe---cccceEEEEcCCCCCCCC
Q 041703 23 SHLFRIGDSIVFDFET-ELYNLMQVTALDYQTCK-------ANNPIKVLNSGP-ATIVL---NEQGVFYYLCNLSNYCDL 90 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~-~~HsV~~V~~~~y~~C~-------~s~~~~~~~~G~-~~v~l---~~~G~~YFiC~~~~HC~~ 90 (146)
..+++.||+|.|.... ..|++..-... + .+. ..........|. .++++ +++|.|+|.|. .|+.+
T Consensus 20 ~i~v~~Gd~V~~~N~~~~~H~v~~~~~~-~-~~~~g~~~~~~~~~~~~i~pG~~~~~~f~~~~~~G~y~y~C~--~H~~~ 95 (105)
T 3cvb_A 20 NVTVHPGDTVKWVNNKLPPHNILFDDKQ-V-PGASKELADKLSHSQLMFSPGESYEITFSSDFPAGTYTYYCA--PHRGA 95 (105)
T ss_dssp EEEECTTEEEEEEECSSCCEEEEECTTS-S-GGGCHHHHHHHCEEEEECSTTCEEEEEECTTSCSEEEEEECT--TTGGG
T ss_pred EEEEcCCCEEEEEECCCCCCeEEEeCCC-C-CcccccccccccccccccCCCCeEEEEEecCCCCeeEEEEeC--Cchhc
Confidence 3588999999998654 47888764311 1 120 000011233443 46777 78999999999 79999
Q ss_pred CCeEEEEee
Q 041703 91 GQKISIIVH 99 (146)
Q Consensus 91 GmKl~I~V~ 99 (146)
||+..|.|.
T Consensus 96 GM~G~i~V~ 104 (105)
T 3cvb_A 96 GMVGKITVE 104 (105)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEEc
Confidence 999999985
No 28
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=97.76 E-value=6.6e-05 Score=51.84 Aligned_cols=65 Identities=14% Similarity=0.250 Sum_probs=45.4
Q ss_pred CceeeCCEEEEEecCC-CceEEEEcccc----CCcccCCCCccccCCC-CcEEEecccceEEEEcCCCCCCCCCCeEEEE
Q 041703 24 HLFRIGDSIVFDFETE-LYNLMQVTALD----YQTCKANNPIKVLNSG-PATIVLNEQGVFYYLCNLSNYCDLGQKISII 97 (146)
Q Consensus 24 ~~f~vGD~L~F~y~~~-~HsV~~V~~~~----y~~C~~s~~~~~~~~G-~~~v~l~~~G~~YFiC~~~~HC~~GmKl~I~ 97 (146)
.++++||+|.|..... .|+|......+ |+. ..+..| ..+++++++|.|+|.|.. |- ||+..|.
T Consensus 35 i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~~~~~~-------~~~~pG~~~~~tf~~~G~y~y~C~~--H~--gM~G~i~ 103 (105)
T 2ov0_A 35 LHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKG-------PMMKKEQAYSLTFTEAGTYDYHCTP--HP--FMRGKVV 103 (105)
T ss_dssp EEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEEE
T ss_pred EEECCCCEEEEEECCCCCEEEEEcCCCCCcccccc-------cccCCCCEEEEEeCCCEEEEEEeCC--CC--CCEEEEE
Confidence 4788999999986543 79987543111 111 112333 357888999999999987 64 9999998
Q ss_pred ee
Q 041703 98 VH 99 (146)
Q Consensus 98 V~ 99 (146)
|.
T Consensus 104 V~ 105 (105)
T 2ov0_A 104 VE 105 (105)
T ss_dssp EC
T ss_pred EC
Confidence 83
No 29
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.68 E-value=0.00014 Score=52.58 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=46.5
Q ss_pred CCceeeCCEEEEEecCC-CceEEEEccccCCcccCCCCccccCCCC-cEEEecccceEEEEcCCCCCCCCCCeEEEEee
Q 041703 23 SHLFRIGDSIVFDFETE-LYNLMQVTALDYQTCKANNPIKVLNSGP-ATIVLNEQGVFYYLCNLSNYCDLGQKISIIVH 99 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~~-~HsV~~V~~~~y~~C~~s~~~~~~~~G~-~~v~l~~~G~~YFiC~~~~HC~~GmKl~I~V~ 99 (146)
..++++||+|.|..... .|++...+...- .=.+.. ..+..|. .+++++++|.|.|+|.. |. ||+..|.|.
T Consensus 61 ~i~V~~GdtV~~~N~d~~~H~v~~~~~~~g-~~~~~s--~~l~pG~t~~~tF~~~G~y~y~C~~--H~--gM~G~I~V~ 132 (132)
T 3c75_A 61 EVTIKAGETVYWVNGEVMPHNVAFKKGIVG-EDAFRG--EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGKVIVE 132 (132)
T ss_dssp EEEECTTCEEEEEECSSSCBCCEECTTTSS-SSCEEC--CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred EEEECCCCEEEEEECCCCceEEEEeCCCCC-cccccc--cccCCCCEEEEEcCCCEEEEEEeCC--Cc--CCEEEEEEC
Confidence 34788999999986543 699876532110 000001 1233343 47888999999999997 76 999999884
No 30
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=97.65 E-value=9.3e-05 Score=56.20 Aligned_cols=75 Identities=12% Similarity=0.214 Sum_probs=48.1
Q ss_pred Cce-eeCCEEEEEecC--C------CceEEEEccccCC---------------cccCCCCc---cccCCCC-cEEEec--
Q 041703 24 HLF-RIGDSIVFDFET--E------LYNLMQVTALDYQ---------------TCKANNPI---KVLNSGP-ATIVLN-- 73 (146)
Q Consensus 24 ~~f-~vGD~L~F~y~~--~------~HsV~~V~~~~y~---------------~C~~s~~~---~~~~~G~-~~v~l~-- 73 (146)
.++ +.||+|.|.+.+ . .|+++..+..+++ .=+..+.+ ..+..|. ..|+++
T Consensus 60 itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v~~~d~~vl~~t~~l~pGet~svtf~~~ 139 (167)
T 3ay2_A 60 IQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKPDDARVVAHTKLIGGGEESSLTLDPA 139 (167)
T ss_dssp EEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTSCTTCTTEEEECCCBCTTCEEEEEECGG
T ss_pred EEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhccccccccccccchhccceeeCCCCEEEEEEecC
Confidence 356 679987776643 2 2998877543221 10111101 1234454 356665
Q ss_pred --ccceEEEEcCCCCCCCCCCeEEEEee
Q 041703 74 --EQGVFYYLCNLSNYCDLGQKISIIVH 99 (146)
Q Consensus 74 --~~G~~YFiC~~~~HC~~GmKl~I~V~ 99 (146)
++|.|.|+|+..+|=+ |||-.|+|.
T Consensus 140 ~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~ 166 (167)
T 3ay2_A 140 KLADGDYKFACTFPGHGA-LMNGKVTLV 166 (167)
T ss_dssp GGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred CCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence 7999999999999988 999999986
No 31
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=97.63 E-value=0.00034 Score=50.73 Aligned_cols=76 Identities=12% Similarity=0.233 Sum_probs=49.1
Q ss_pred CCceeeC-CEEEEEecC-C-------CceEEEEcccc----------------CCcccCCCC---ccccCCCC-cEEEec
Q 041703 23 SHLFRIG-DSIVFDFET-E-------LYNLMQVTALD----------------YQTCKANNP---IKVLNSGP-ATIVLN 73 (146)
Q Consensus 23 ~~~f~vG-D~L~F~y~~-~-------~HsV~~V~~~~----------------y~~C~~s~~---~~~~~~G~-~~v~l~ 73 (146)
..+++.| |.+.|.+.+ + .|+++..+..+ |..=+..+- ...+..|. ..++++
T Consensus 19 ~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~~~~~~~~~t~~l~pGet~svtf~ 98 (129)
T 1cuo_A 19 SISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKRVIAFTPIIGGGEKTSVKFK 98 (129)
T ss_dssp EEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTTCSEECCCBCTTCEEEEEEE
T ss_pred eEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhccccccccccccccceeeeeEECCCCEEEEEEe
Confidence 3578899 977777754 2 39988875432 211000110 11234454 344443
Q ss_pred -----ccceEEEEcCCCCCCCCCCeEEEEee
Q 041703 74 -----EQGVFYYLCNLSNYCDLGQKISIIVH 99 (146)
Q Consensus 74 -----~~G~~YFiC~~~~HC~~GmKl~I~V~ 99 (146)
++|.|+|+|+..+|=+ |||-.|+|.
T Consensus 99 ~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~ 128 (129)
T 1cuo_A 99 VSALSKDEAYTYFCSYPGHFS-MMRGTLKLE 128 (129)
T ss_dssp GGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred ccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence 7999999999999998 999999986
No 32
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=97.25 E-value=0.0021 Score=46.49 Aligned_cols=74 Identities=12% Similarity=0.279 Sum_probs=46.1
Q ss_pred ce-eeCCEEEEEecCC--------CceEEEEcccc----------------CCcccCCCC---ccccCCCC-cEEEec--
Q 041703 25 LF-RIGDSIVFDFETE--------LYNLMQVTALD----------------YQTCKANNP---IKVLNSGP-ATIVLN-- 73 (146)
Q Consensus 25 ~f-~vGD~L~F~y~~~--------~HsV~~V~~~~----------------y~~C~~s~~---~~~~~~G~-~~v~l~-- 73 (146)
++ +.||++.|.+.+. .|+++..+..+ |..=+..+- ...+..|. ..++++
T Consensus 20 ~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~pGes~~vtf~~~ 99 (128)
T 2iaa_C 20 VVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVIGGGETDSVTFDVS 99 (128)
T ss_dssp EECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEEEEEEESS
T ss_pred EEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchhhccceeeCCCCEEEEEEecc
Confidence 44 5599877777542 39988765322 211010110 11234554 345554
Q ss_pred --ccc-eEEEEcCCCCCCCCCCeEEEEee
Q 041703 74 --EQG-VFYYLCNLSNYCDLGQKISIIVH 99 (146)
Q Consensus 74 --~~G-~~YFiC~~~~HC~~GmKl~I~V~ 99 (146)
++| .|.|+|+.++|=+ |||-.|+|.
T Consensus 100 ~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 100 KLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp CCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred ccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 688 5999999999999 999999985
No 33
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=97.24 E-value=0.0016 Score=47.10 Aligned_cols=72 Identities=15% Similarity=0.291 Sum_probs=44.5
Q ss_pred eeCCEEEEEecCC--------CceEEEEcccc----------------CCcccCCCC---ccccCCCC-cEEEec----c
Q 041703 27 RIGDSIVFDFETE--------LYNLMQVTALD----------------YQTCKANNP---IKVLNSGP-ATIVLN----E 74 (146)
Q Consensus 27 ~vGD~L~F~y~~~--------~HsV~~V~~~~----------------y~~C~~s~~---~~~~~~G~-~~v~l~----~ 74 (146)
+.||++.|.+.+. .|+++..+..+ |..=+..+- ...+..|. ..++++ +
T Consensus 24 k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~pGet~svtf~~~~l~ 103 (129)
T 2ccw_A 24 KSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIGGGESDSVTFDVSKIA 103 (129)
T ss_dssp TTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEEEEEEEGGGSC
T ss_pred cCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccccccccccceeeeeEECCCCEEEEEEeccccC
Confidence 4599777777542 39988775432 211011110 11234454 345543 5
Q ss_pred cce-EEEEcCCCCCCCCCCeEEEEee
Q 041703 75 QGV-FYYLCNLSNYCDLGQKISIIVH 99 (146)
Q Consensus 75 ~G~-~YFiC~~~~HC~~GmKl~I~V~ 99 (146)
+|. |.|+|+..+|=+ |||-.|+|.
T Consensus 104 ~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 104 AGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp TTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred CCceEEEEeCCCChhH-cCEEEEEEe
Confidence 665 999999999988 999999985
No 34
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=97.22 E-value=0.00014 Score=53.91 Aligned_cols=76 Identities=17% Similarity=0.329 Sum_probs=49.2
Q ss_pred ceeeCCEEEEE---ecC------CCceEEEEccccCCcccCCC-Ccccc--C--CCCcEEEec-------------ccc-
Q 041703 25 LFRIGDSIVFD---FET------ELYNLMQVTALDYQTCKANN-PIKVL--N--SGPATIVLN-------------EQG- 76 (146)
Q Consensus 25 ~f~vGD~L~F~---y~~------~~HsV~~V~~~~y~~C~~s~-~~~~~--~--~G~~~v~l~-------------~~G- 76 (146)
.+++||.|-+- |+. ....+++|++++|+.|+... ....+ + .+...+++. ++|
T Consensus 24 ~v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~ 103 (140)
T 2vsm_B 24 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNK 103 (140)
T ss_dssp CCCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTE
T ss_pred EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 45679999774 432 14678999999999998863 21111 1 222222221 356
Q ss_pred eEEEEcCC-----------CCCCCC-CCeEEEEeeC
Q 041703 77 VFYYLCNL-----------SNYCDL-GQKISIIVHG 100 (146)
Q Consensus 77 ~~YFiC~~-----------~~HC~~-GmKl~I~V~~ 100 (146)
.||||+.- +|-|.. .|||.|.|..
T Consensus 104 ~YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~~ 139 (140)
T 2vsm_B 104 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGH 139 (140)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred ceEEEecCCCCccccccccCCccccceEEEEEEecC
Confidence 88999873 357875 7999999864
No 35
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=97.17 E-value=0.00033 Score=51.98 Aligned_cols=74 Identities=22% Similarity=0.325 Sum_probs=49.5
Q ss_pred ceeeCCEEEEE---ecC---------CCceEEEEccccCCcccCCC-CccccC----CCCcEE--------------Eec
Q 041703 25 LFRIGDSIVFD---FET---------ELYNLMQVTALDYQTCKANN-PIKVLN----SGPATI--------------VLN 73 (146)
Q Consensus 25 ~f~vGD~L~F~---y~~---------~~HsV~~V~~~~y~~C~~s~-~~~~~~----~G~~~v--------------~l~ 73 (146)
.+++||.|-+. |.. ....+++|++++|++|+... +...+. .+...| .+
T Consensus 23 ~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF- 101 (141)
T 3d12_B 23 YPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEF- 101 (141)
T ss_dssp CCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCC-
T ss_pred EecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceee-
Confidence 67789999773 443 24578999999999998862 221111 122222 22
Q ss_pred ccc-eEEEEcCC-----------CCCCCC-CCeEEEEee
Q 041703 74 EQG-VFYYLCNL-----------SNYCDL-GQKISIIVH 99 (146)
Q Consensus 74 ~~G-~~YFiC~~-----------~~HC~~-GmKl~I~V~ 99 (146)
++| .||||++- +|-|.. .|||.|.|.
T Consensus 102 ~pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~ 140 (141)
T 3d12_B 102 RSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG 140 (141)
T ss_dssp CTTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred eCCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence 356 89999973 467875 899999985
No 36
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=97.15 E-value=0.0012 Score=45.49 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=43.3
Q ss_pred CceeeCCEEEEEecCC---CceEEEEccccCCcccCCCCccccCCCC-cEEE--ecccceEEEEcCCCCCCCC-CCeEEE
Q 041703 24 HLFRIGDSIVFDFETE---LYNLMQVTALDYQTCKANNPIKVLNSGP-ATIV--LNEQGVFYYLCNLSNYCDL-GQKISI 96 (146)
Q Consensus 24 ~~f~vGD~L~F~y~~~---~HsV~~V~~~~y~~C~~s~~~~~~~~G~-~~v~--l~~~G~~YFiC~~~~HC~~-GmKl~I 96 (146)
.+++.||.+.|.+.+. .|++..-+ .. . ......|. ..+. .+++|.|+|.|.. ||.. +|+..|
T Consensus 40 i~v~~G~~V~~~~~n~d~~~H~~~i~~-~~-----~---~~~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~g~i 108 (112)
T 1iby_A 40 LVVKKGDAVKVVVENKSPISEGFSIDA-FG-----V---QEVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPGTL 108 (112)
T ss_dssp EEEETTCEEEEEEEECSSSCEEEEEGG-GT-----E---EEEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCEEE
T ss_pred EEEeCCCEEEEEEEECCCCeEEEEEcC-CC-----c---eeEeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCEEEE
Confidence 4789999999987542 57764322 11 0 12234444 3444 4899999999987 7854 499999
Q ss_pred Eee
Q 041703 97 IVH 99 (146)
Q Consensus 97 ~V~ 99 (146)
.|.
T Consensus 109 ~V~ 111 (112)
T 1iby_A 109 NVV 111 (112)
T ss_dssp EEE
T ss_pred EEe
Confidence 885
No 37
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=97.11 E-value=0.0013 Score=48.65 Aligned_cols=75 Identities=25% Similarity=0.429 Sum_probs=49.0
Q ss_pred ceeeCCEEEE---EecC-------CCceEEEEccccCCcccCCCCc-ccc--C-----CCCcEEEe-------------c
Q 041703 25 LFRIGDSIVF---DFET-------ELYNLMQVTALDYQTCKANNPI-KVL--N-----SGPATIVL-------------N 73 (146)
Q Consensus 25 ~f~vGD~L~F---~y~~-------~~HsV~~V~~~~y~~C~~s~~~-~~~--~-----~G~~~v~l-------------~ 73 (146)
.+++||.|-+ +|.. ....|++|++++|++|+..... ..+ + .+...|++ =
T Consensus 24 ~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~EF 103 (138)
T 1shx_A 24 DVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFEF 103 (138)
T ss_dssp EECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCCC
T ss_pred EecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCceee
Confidence 5789999977 4542 2456889999999999875422 111 1 13333322 1
Q ss_pred ccc-eEEEEcCC-----CCCCCCCCeEEEEeeCCC
Q 041703 74 EQG-VFYYLCNL-----SNYCDLGQKISIIVHGKN 102 (146)
Q Consensus 74 ~~G-~~YFiC~~-----~~HC~~GmKl~I~V~~~~ 102 (146)
++| .||||++- ++-| |||.|.|....
T Consensus 104 ~pG~~YY~ISts~~~~~g~~C---lrL~V~V~p~~ 135 (138)
T 1shx_A 104 RPGREYFYISSAIPDNGRRSC---LKLKVFVRPTN 135 (138)
T ss_dssp CTTEEEEEEEEESSCCSCSCC---CEEEEEECCTT
T ss_pred cCCCeEEEEEcCCCCCCCCce---eEEEEEEEccc
Confidence 257 88999753 3456 99999998754
No 38
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=97.09 E-value=0.0012 Score=47.82 Aligned_cols=75 Identities=15% Similarity=0.264 Sum_probs=46.7
Q ss_pred Cce-eeCCEEEEEecCC--------CceEEEEccccCC----------------cccCCCCc---cccCCCC-cEEEec-
Q 041703 24 HLF-RIGDSIVFDFETE--------LYNLMQVTALDYQ----------------TCKANNPI---KVLNSGP-ATIVLN- 73 (146)
Q Consensus 24 ~~f-~vGD~L~F~y~~~--------~HsV~~V~~~~y~----------------~C~~s~~~---~~~~~G~-~~v~l~- 73 (146)
.++ +.||++.|.+.+. .|+++..+..+.+ .=+..+-+ ..+..|. ..++++
T Consensus 20 i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~pGet~svtf~~ 99 (128)
T 1nwp_A 20 IAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGDARVIAHTKVIGAGEKDSVTFDV 99 (128)
T ss_dssp EEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTCTTEEEECCCBCTTCEEEEEEEG
T ss_pred EEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhccccccccccccchhheeeeeeCCCCEEEEEEec
Confidence 456 6799887777542 2998876533221 00000001 1234554 355554
Q ss_pred ---ccce-EEEEcCCCCCCCCCCeEEEEee
Q 041703 74 ---EQGV-FYYLCNLSNYCDLGQKISIIVH 99 (146)
Q Consensus 74 ---~~G~-~YFiC~~~~HC~~GmKl~I~V~ 99 (146)
++|. |.|+|+.++|=+ |||-.|+|.
T Consensus 100 ~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 100 SKLAAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp GGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred cccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence 5676 999999999998 999999883
No 39
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=97.09 E-value=0.00087 Score=51.63 Aligned_cols=76 Identities=22% Similarity=0.515 Sum_probs=47.5
Q ss_pred ceeeCCEEEE---EecCC--------CceEEEEccccCCcccCCC-Ccccc------C-CCCcEEE--e-----------
Q 041703 25 LFRIGDSIVF---DFETE--------LYNLMQVTALDYQTCKANN-PIKVL------N-SGPATIV--L----------- 72 (146)
Q Consensus 25 ~f~vGD~L~F---~y~~~--------~HsV~~V~~~~y~~C~~s~-~~~~~------~-~G~~~v~--l----------- 72 (146)
.+++||.|-+ +|+.+ ...|++|++++|+.|+... ....+ . .|..+|+ +
T Consensus 51 ~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~~~~~~~~~~C~~P~~~~~p~kftikFQ~FSP~p~GlE 130 (182)
T 3czu_B 51 HVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKE 130 (182)
T ss_dssp EECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCCCCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSCC
T ss_pred EeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccCCCCCcEEEEeCCCCCCCCCcEEEEEEEEcCCCCCCee
Confidence 5678999977 45431 3568899999999998764 22111 1 1222222 1
Q ss_pred cccc-eEEEEcC----CCCCCCCCCeEEEEeeCCCC
Q 041703 73 NEQG-VFYYLCN----LSNYCDLGQKISIIVHGKNS 103 (146)
Q Consensus 73 ~~~G-~~YFiC~----~~~HC~~GmKl~I~V~~~~~ 103 (146)
=++| .||||+. .++.| |||.|.|.....
T Consensus 131 F~pG~dYY~ISts~~~~gg~C---mrL~v~V~~k~~ 163 (182)
T 3czu_B 131 FKEGHSYYYISKPIHQHEDRC---LRLKVTVSGKIT 163 (182)
T ss_dssp CCTTCEEEEEEEESSSCCCSC---CEEEEEECC---
T ss_pred EeCCCeEEEEEccCCCCCCcc---eEEEEEEecCCC
Confidence 1356 8999986 35666 999999987763
No 40
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=97.00 E-value=0.0015 Score=50.10 Aligned_cols=75 Identities=25% Similarity=0.429 Sum_probs=49.2
Q ss_pred ceeeCCEEEE---EecC-------CCceEEEEccccCCcccCCCCc-ccc--C-----CCCcEEEe-------------c
Q 041703 25 LFRIGDSIVF---DFET-------ELYNLMQVTALDYQTCKANNPI-KVL--N-----SGPATIVL-------------N 73 (146)
Q Consensus 25 ~f~vGD~L~F---~y~~-------~~HsV~~V~~~~y~~C~~s~~~-~~~--~-----~G~~~v~l-------------~ 73 (146)
.+++||.|-+ +|+. ....+++|++++|++|+..... ..+ + .|...|++ =
T Consensus 53 ~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~EF 132 (177)
T 2x11_B 53 DVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFEF 132 (177)
T ss_dssp EECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTTTEEEEEEECCTTCSSSSCEEEEECCSSCSSTTCCCC
T ss_pred EecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCcEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCccc
Confidence 5778999977 4542 2456889999999999875432 111 1 13333322 1
Q ss_pred ccc-eEEEEcCC-----CCCCCCCCeEEEEeeCCC
Q 041703 74 EQG-VFYYLCNL-----SNYCDLGQKISIIVHGKN 102 (146)
Q Consensus 74 ~~G-~~YFiC~~-----~~HC~~GmKl~I~V~~~~ 102 (146)
++| .||||++- ++-| |||.|.|...+
T Consensus 133 ~pG~~YYyISTS~~~~~g~~C---lrLkV~V~p~~ 164 (177)
T 2x11_B 133 RPGREYFYISSAIPDNGRRSC---LKLKVFVRPTN 164 (177)
T ss_dssp CTTEEEEEEEEESSCCCSSSC---CEEEEEECCTT
T ss_pred cCCCeEEEEecCCCCCCCCcc---eEEEEEEEcCC
Confidence 357 88999753 2446 99999999876
No 41
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=96.87 E-value=0.0054 Score=44.58 Aligned_cols=67 Identities=18% Similarity=0.314 Sum_probs=44.9
Q ss_pred CCceeeCCEEEEEecCC--CceEEEEccccCCcccCCCCccccCCCC---cEEEecccceEEEEcCCCCCCC---CCCeE
Q 041703 23 SHLFRIGDSIVFDFETE--LYNLMQVTALDYQTCKANNPIKVLNSGP---ATIVLNEQGVFYYLCNLSNYCD---LGQKI 94 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~~--~HsV~~V~~~~y~~C~~s~~~~~~~~G~---~~v~l~~~G~~YFiC~~~~HC~---~GmKl 94 (146)
..++.+||.+.|...+. .|+... ..... ......|. ..++++++|.|+|.|++ +|- .+|++
T Consensus 61 ~l~Vp~G~~V~~~vts~DV~Hsf~i-p~~~~--------k~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~~H~~M~g 129 (135)
T 2cua_A 61 PIEVPQGAEIVFKITSPDVIHGFHV-EGTNI--------NVEVLPGEVSTVRYTFKRPGEYRIICNQ--YCGLGHQNMFG 129 (135)
T ss_dssp SEEEETTSEEEEEEEBSSSCEEEEE-TTSSC--------EEEECBTBCEEEEEECCSCEEEEEECCS--CCSTTSTTCEE
T ss_pred EEEEcCCCEEEEEEEeCCccceEEe-cCCCc--------eeEeCCCCcEEEEEEcCCCEEEEEECcc--cCCCCcCCCEE
Confidence 34889999999998642 466542 11111 01223342 47889999999999987 443 68999
Q ss_pred EEEeeC
Q 041703 95 SIIVHG 100 (146)
Q Consensus 95 ~I~V~~ 100 (146)
.|.|..
T Consensus 130 ~v~V~~ 135 (135)
T 2cua_A 130 TIVVKE 135 (135)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999863
No 42
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=96.16 E-value=0.0064 Score=45.78 Aligned_cols=75 Identities=20% Similarity=0.368 Sum_probs=46.7
Q ss_pred ceeeCCEEEEE---ecC--------CCceEEEEccccCCcccCCCCc-ccc------C-CCCcEE--Ee-----------
Q 041703 25 LFRIGDSIVFD---FET--------ELYNLMQVTALDYQTCKANNPI-KVL------N-SGPATI--VL----------- 72 (146)
Q Consensus 25 ~f~vGD~L~F~---y~~--------~~HsV~~V~~~~y~~C~~s~~~-~~~------~-~G~~~v--~l----------- 72 (146)
.+++||.|-+. |.. ....|++|++++|++|+..... ..+ . .+...| .+
T Consensus 33 ~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G~E 112 (157)
T 2wo3_B 33 EVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGFE 112 (157)
T ss_dssp EECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTTSEEEEEEECCTTCTTSSCEEEEECCSSCSSTTSCC
T ss_pred EeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEECCCCCCCee
Confidence 57889999774 532 1235889999999999886522 111 1 122222 21
Q ss_pred cccc-eEEEEcCC-----CCCCCCCCeEEEEeeCCC
Q 041703 73 NEQG-VFYYLCNL-----SNYCDLGQKISIIVHGKN 102 (146)
Q Consensus 73 ~~~G-~~YFiC~~-----~~HC~~GmKl~I~V~~~~ 102 (146)
=++| .||||+.- ++-| |||.|.|....
T Consensus 113 F~pG~~YY~ISTS~g~~~gg~C---~rlkV~V~~~~ 145 (157)
T 2wo3_B 113 FRPGHEYYYISATPPNAVDRPC---LRLKVYVRPTQ 145 (157)
T ss_dssp CCTTCEEEEEEECTTCSCCTTC---CEEEEEECCCC
T ss_pred eeCCCeEEEEEecCCCCCCCcc---eeEEEEEEcCC
Confidence 1356 89999964 4556 57777777655
No 43
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=95.31 E-value=0.19 Score=36.22 Aligned_cols=71 Identities=17% Similarity=0.289 Sum_probs=42.2
Q ss_pred ceee-CCEEEEEecCC--------CceEEEEccc----------------cCCcccCCCCc---cccCCCC-cEEEec--
Q 041703 25 LFRI-GDSIVFDFETE--------LYNLMQVTAL----------------DYQTCKANNPI---KVLNSGP-ATIVLN-- 73 (146)
Q Consensus 25 ~f~v-GD~L~F~y~~~--------~HsV~~V~~~----------------~y~~C~~s~~~---~~~~~G~-~~v~l~-- 73 (146)
++.. |+++.|.+... .|+++..+.+ +|..=+..+-+ ..+..|. ..++++
T Consensus 21 ~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~~d~~via~t~~l~pGes~~vtf~~~ 100 (125)
T 3fsa_A 21 TVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVS 100 (125)
T ss_dssp EECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCCEECCCBCTTCEEEEEEEGG
T ss_pred EEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccCCCCCccceeccceeCCCcEEEEEEeCc
Confidence 4433 99998888653 3999887422 22110101111 1234554 345554
Q ss_pred ---ccceEEEEcCCCCCCCCCCeEEEEee
Q 041703 74 ---EQGVFYYLCNLSNYCDLGQKISIIVH 99 (146)
Q Consensus 74 ---~~G~~YFiC~~~~HC~~GmKl~I~V~ 99 (146)
++|.|-|+|+ +|= |||-.|.|.
T Consensus 101 ~l~~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 101 KLKEGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp GC---CCEEEECS--SST--TCEEEEEEC
T ss_pred CcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence 5699999999 887 999999873
No 44
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=94.57 E-value=0.074 Score=38.84 Aligned_cols=75 Identities=19% Similarity=0.406 Sum_probs=45.0
Q ss_pred ceeeCCEEEE---EecCC--------CceEEEEccccCCcccCCC-Ccccc------C-CCCcEEE--e-----------
Q 041703 25 LFRIGDSIVF---DFETE--------LYNLMQVTALDYQTCKANN-PIKVL------N-SGPATIV--L----------- 72 (146)
Q Consensus 25 ~f~vGD~L~F---~y~~~--------~HsV~~V~~~~y~~C~~s~-~~~~~------~-~G~~~v~--l----------- 72 (146)
.+++||.|-+ +|+.+ ...+++|++++|++|+... ....+ . .|..+|+ +
T Consensus 23 ~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~FSP~p~G~E 102 (132)
T 3hei_B 23 HVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKE 102 (132)
T ss_dssp EECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCCSCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSCC
T ss_pred EeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccCCCCCcEEEEeCCCCCCCCceEEEEEEEEcCCCCCCee
Confidence 5679999976 45432 3568899999999999764 22111 1 2333332 2
Q ss_pred cccc-eEEEEcCCCCCCCCC-CeEEEEee
Q 041703 73 NEQG-VFYYLCNLSNYCDLG-QKISIIVH 99 (146)
Q Consensus 73 ~~~G-~~YFiC~~~~HC~~G-mKl~I~V~ 99 (146)
=++| .||||++-..|=... +||.|.|.
T Consensus 103 F~pG~~YY~ISt~~~~~~~~cl~l~v~v~ 131 (132)
T 3hei_B 103 FKEGHSYYYISKPIHQHEDRCLRLKVTVK 131 (132)
T ss_dssp CCTTCEEEEEEEESSCCCCSCCEEEEEEC
T ss_pred ecCCCcEEEEEccCCCCCCcceEEEEEEE
Confidence 1256 888888732222211 78888774
No 45
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=94.51 E-value=0.048 Score=45.69 Aligned_cols=73 Identities=14% Similarity=0.198 Sum_probs=50.2
Q ss_pred CCceeeCCEEEEEecCC---CceEEEEccccCCcccCCCCccccCCCC---cEEEecccceEEEEcCCCCCCCCCCeEEE
Q 041703 23 SHLFRIGDSIVFDFETE---LYNLMQVTALDYQTCKANNPIKVLNSGP---ATIVLNEQGVFYYLCNLSNYCDLGQKISI 96 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~~---~HsV~~V~~~~y~~C~~s~~~~~~~~G~---~~v~l~~~G~~YFiC~~~~HC~~GmKl~I 96 (146)
..+++.||+|+|++.+. .|++..-.......|- ...|. .+|+++++|+++|.|...+|=..||+..|
T Consensus 56 ~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~-------i~pG~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G~i 128 (447)
T 2dv6_A 56 TLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIV-------NGKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEGNI 128 (447)
T ss_dssp CEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCB-------CSTTBEEEEEEECCSCEEEEEECCSTTHHHHTCEEEE
T ss_pred eEEEcCCCEEEEEEEcCCCCceEEEEccCCccccee-------cCCCCeEEEEEEcCCCEEEEEEeCCCChhhCCCEEEE
Confidence 46889999999988653 3666432221111232 22333 35666889999999999888888999999
Q ss_pred EeeCCC
Q 041703 97 IVHGKN 102 (146)
Q Consensus 97 ~V~~~~ 102 (146)
.|....
T Consensus 129 ~V~~~~ 134 (447)
T 2dv6_A 129 QVLPGN 134 (447)
T ss_dssp EEESSC
T ss_pred EEeCCc
Confidence 998755
No 46
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=94.24 E-value=0.13 Score=45.92 Aligned_cols=67 Identities=16% Similarity=0.266 Sum_probs=44.2
Q ss_pred CceeeCCEEEEEecCC------CceEEEEccccCCcccCCCCccccCCCC---cEEEecccceEEEEcCC---CCCCCCC
Q 041703 24 HLFRIGDSIVFDFETE------LYNLMQVTALDYQTCKANNPIKVLNSGP---ATIVLNEQGVFYYLCNL---SNYCDLG 91 (146)
Q Consensus 24 ~~f~vGD~L~F~y~~~------~HsV~~V~~~~y~~C~~s~~~~~~~~G~---~~v~l~~~G~~YFiC~~---~~HC~~G 91 (146)
.++++||+|.|...+. .|++..-. +. .......|. .+|+++++|.|||.|.. ..| .|
T Consensus 515 I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~---~g------v~~~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H--~g 583 (595)
T 1fwx_A 515 FTVKEGDEVTVIVTNLDEIDDLTHGFTMGN---YG------VAMEIGPQMTSSVTFVAANPGVYWYYCQWFCHALH--ME 583 (595)
T ss_dssp EEEETTCEEEEEEEECCCSTTCCEEEEETT---TT------EEEEECTTCEEEEEEECCSCEEEEEECCSCCSTTC--TT
T ss_pred EEEECCCEEEEEEEeCCCCCCceeeEEecC---CC------cceeeCCCCeEEEEEECCCCEEEEEECCCCCCCCc--cC
Confidence 3677899999987542 46664321 11 001223343 36788999999999984 355 49
Q ss_pred CeEEEEeeCC
Q 041703 92 QKISIIVHGK 101 (146)
Q Consensus 92 mKl~I~V~~~ 101 (146)
|+..|.|...
T Consensus 584 M~G~IiV~p~ 593 (595)
T 1fwx_A 584 MRGRMLVEPK 593 (595)
T ss_dssp CEEEEEEECC
T ss_pred CEEEEEEEcC
Confidence 9999999764
No 47
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=94.20 E-value=0.21 Score=37.60 Aligned_cols=66 Identities=18% Similarity=0.292 Sum_probs=43.4
Q ss_pred CCceeeCCEEEEEecCC--CceEEEEccccCCcccCCCCccccCCCC---cEEEecccceEEEEcCCCCCCC---CCCeE
Q 041703 23 SHLFRIGDSIVFDFETE--LYNLMQVTALDYQTCKANNPIKVLNSGP---ATIVLNEQGVFYYLCNLSNYCD---LGQKI 94 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~~--~HsV~~V~~~~y~~C~~s~~~~~~~~G~---~~v~l~~~G~~YFiC~~~~HC~---~GmKl 94 (146)
...+.+|+.+.|...+. .|+...- ++. -......|. ..++.+++|.||+.|++ .|- .+|+.
T Consensus 94 ~l~VP~G~~Vr~~vTS~DViHsf~IP---~lg------ik~da~PG~~n~~~~~~~kpG~y~g~Cse--~CG~~Hs~M~g 162 (168)
T 3s8f_B 94 PIEVPQGAEIVFKITSPDVIHGFHVE---GTN------INVEVLPGEVSTVRYTFKRPGEYRIICNQ--YCGLGHQNMFG 162 (168)
T ss_dssp SEEEETTSEEEEEEECSSSCEEEEET---TSS------CEEEECTTBCEEEEEECCSCEEEEEECCS--CCSTTGGGCEE
T ss_pred EEEEeCCCeEEEEEecCCceEEEEEC---CCC------eEEEecCCceeEEEEEeCCCEEEEEECCc--CCCCCcCCCEE
Confidence 34788999999987653 4554321 111 011122343 46788999999999996 455 46999
Q ss_pred EEEee
Q 041703 95 SIIVH 99 (146)
Q Consensus 95 ~I~V~ 99 (146)
.|.|.
T Consensus 163 ~V~V~ 167 (168)
T 3s8f_B 163 TIVVK 167 (168)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99986
No 48
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.11 E-value=0.14 Score=45.92 Aligned_cols=66 Identities=15% Similarity=0.303 Sum_probs=43.3
Q ss_pred CceeeCCEEEEEecC------CCceEEEEccccCCcccCCCCccccCCCC---cEEEecccceEEEEcCCCCCCCCC---
Q 041703 24 HLFRIGDSIVFDFET------ELYNLMQVTALDYQTCKANNPIKVLNSGP---ATIVLNEQGVFYYLCNLSNYCDLG--- 91 (146)
Q Consensus 24 ~~f~vGD~L~F~y~~------~~HsV~~V~~~~y~~C~~s~~~~~~~~G~---~~v~l~~~G~~YFiC~~~~HC~~G--- 91 (146)
.++.+||.|.|...+ -.|+...-. +. .......|. .+|+.+++|.|||+|+. .|-.+
T Consensus 560 I~VP~GdtVrfiLTN~D~veDViHSF~IPs---lG------IK~DaiPGrtnsvtFtadkPGvY~y~CSE--~CGa~Hs~ 628 (638)
T 3sbq_A 560 FTVKQGDEVTVTITNIDQIEDVSHGFVVVN---HG------VSMEISPQQTSSITFVADKPGLHWYYCSW--FCHALHME 628 (638)
T ss_dssp EEEETTCEEEEEEEECCCSTTCCEEEEETT---TT------EEEEECTTCEEEEEEECCSCEEEEEECCS--CCSTTCTT
T ss_pred EEEecCceeEEEEecCCcCCCceeeeEecC---CC------ceeeeCCCCeEEEEEEcCCCEEEEEECCC--cCCCCccc
Confidence 467788888887654 256654321 11 011223443 36778999999999997 66654
Q ss_pred CeEEEEeeC
Q 041703 92 QKISIIVHG 100 (146)
Q Consensus 92 mKl~I~V~~ 100 (146)
|+..|.|..
T Consensus 629 M~G~ViVEP 637 (638)
T 3sbq_A 629 MVGRMMVEP 637 (638)
T ss_dssp CEEEEEEEC
T ss_pred ceEEEEEec
Confidence 999999874
No 49
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=79.62 E-value=1.7 Score=34.88 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=29.8
Q ss_pred EEEecccceEEEEcCCCCCC-CCCCeEEEEeeCCC
Q 041703 69 TIVLNEQGVFYYLCNLSNYC-DLGQKISIIVHGKN 102 (146)
Q Consensus 69 ~v~l~~~G~~YFiC~~~~HC-~~GmKl~I~V~~~~ 102 (146)
.|+++++|.++|.|....|+ .+||.-.|.|....
T Consensus 286 lv~~~~pG~y~~~~h~~~~~~~~G~~~~~~V~~~~ 320 (336)
T 1oe1_A 286 LYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKW 320 (336)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCC
T ss_pred EEEcCCCceEEEEechhhccccCCCeEEEEECCCC
Confidence 56788899999999988898 89999999998655
No 50
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=78.25 E-value=2.5 Score=33.94 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=47.4
Q ss_pred CceeeCCEEEEEecCC-----CceEEEEccccCCcccCCCCccccCCCC---cEEEecccceEEEEcCCCC-----CCCC
Q 041703 24 HLFRIGDSIVFDFETE-----LYNLMQVTALDYQTCKANNPIKVLNSGP---ATIVLNEQGVFYYLCNLSN-----YCDL 90 (146)
Q Consensus 24 ~~f~vGD~L~F~y~~~-----~HsV~~V~~~~y~~C~~s~~~~~~~~G~---~~v~l~~~G~~YFiC~~~~-----HC~~ 90 (146)
.+++.||+|++++.+. -|.+..-.....+.- ..+.....|. ..|+++++|++||-|-..+ |=..
T Consensus 66 i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~~~~~~---~~~~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~~ 142 (333)
T 1mzy_A 66 MIVHEGDYVELTLINPPENTMPHNIDFHAATGALGG---GGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVS 142 (333)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGG---GGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHHT
T ss_pred EEecCCCEEEEEEEECCCCcccccceecCCCCCCCC---CceeEeCCCCEEEEEEECCCCEEEEEeecCCcccchhhhhC
Confidence 4688999999988653 355543211110000 0111234443 2567788999999998764 6668
Q ss_pred CCeEEEEeeCCC
Q 041703 91 GQKISIIVHGKN 102 (146)
Q Consensus 91 GmKl~I~V~~~~ 102 (146)
||.-.+.|....
T Consensus 143 Gl~G~~iV~~~~ 154 (333)
T 1mzy_A 143 GMAGCIMVLPRD 154 (333)
T ss_dssp TCEEEEEEECTT
T ss_pred CCEEEEEEccCc
Confidence 999999987544
No 51
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=75.79 E-value=3.2 Score=33.29 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=47.0
Q ss_pred CceeeCCEEEEEecCC-----CceEEEEccccCCcccCCCCccccCCCC---cEEEecccceEEEEcCCCC----CCCCC
Q 041703 24 HLFRIGDSIVFDFETE-----LYNLMQVTALDYQTCKANNPIKVLNSGP---ATIVLNEQGVFYYLCNLSN----YCDLG 91 (146)
Q Consensus 24 ~~f~vGD~L~F~y~~~-----~HsV~~V~~~~y~~C~~s~~~~~~~~G~---~~v~l~~~G~~YFiC~~~~----HC~~G 91 (146)
.+++.||+|++++.+. .|.+..-... .. +-...+.....|. ..|+++++|++||-|...+ |=..|
T Consensus 67 i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~~-~~--~~~~~~~~i~pG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~G 143 (336)
T 1oe1_A 67 LVVHEGDYVQLTLVNPATNAMPHNVDFHGAT-GA--LGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG 143 (336)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSC-SG--GGGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred EEEcCCCEEEEEEEcCCCCCccccceECCCC-CC--CCCcceEEeCCCCEEEEEEECCCCeEEEEecCCCCchhHHHhCC
Confidence 4778999999888653 4655432110 00 0001111234443 2566788999999998743 44679
Q ss_pred CeEEEEeeCCC
Q 041703 92 QKISIIVHGKN 102 (146)
Q Consensus 92 mKl~I~V~~~~ 102 (146)
|.-.|.|....
T Consensus 144 l~G~liV~~~~ 154 (336)
T 1oe1_A 144 MSGTLMVLPRD 154 (336)
T ss_dssp CEEEEEEECTT
T ss_pred CeEEEEEecCc
Confidence 99999998654
No 52
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=75.39 E-value=2.4 Score=34.16 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=45.3
Q ss_pred CceeeCCEEEEEecCC-----CceEEEEccccCCcccCCCCccccCCCC---cEEEecccceEEEEcCC---CCCCCCCC
Q 041703 24 HLFRIGDSIVFDFETE-----LYNLMQVTALDYQTCKANNPIKVLNSGP---ATIVLNEQGVFYYLCNL---SNYCDLGQ 92 (146)
Q Consensus 24 ~~f~vGD~L~F~y~~~-----~HsV~~V~~~~y~~C~~s~~~~~~~~G~---~~v~l~~~G~~YFiC~~---~~HC~~Gm 92 (146)
.+++.||+|++++.+. .|++.-=-....+ .... ......|. ..|+.+++|++||-|.. ..|=..||
T Consensus 72 i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~~~d--G~~~-~~~i~PG~~~~y~f~~~~~Gt~wyH~h~~~~~~~~~~Gl 148 (327)
T 1kbv_A 72 IRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQG--GGAA-ATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGM 148 (327)
T ss_dssp EEEETTCEEEEEEEECTTCSSCBCCEETTCCSGG--GGTT-TTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHTTC
T ss_pred EEEeCCCEEEEEEEECCCCCCceeeEeCccccCC--CCCc-ceeecCCCEEEEEEECCCCeEEEEEeCCCChhhhhhcce
Confidence 4788999999987653 3554321000000 0000 11133343 25666889999999975 24556799
Q ss_pred eEEEEeeCCC
Q 041703 93 KISIIVHGKN 102 (146)
Q Consensus 93 Kl~I~V~~~~ 102 (146)
.-.|.|....
T Consensus 149 ~G~~iV~~~~ 158 (327)
T 1kbv_A 149 YGLILVEPKE 158 (327)
T ss_dssp EEEEEEECTT
T ss_pred EEEEEEecCC
Confidence 9999998643
No 53
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=74.33 E-value=3 Score=32.31 Aligned_cols=29 Identities=28% Similarity=0.566 Sum_probs=24.5
Q ss_pred EEEecccceEEEEcCCCCCCCCC---CeEEEEee
Q 041703 69 TIVLNEQGVFYYLCNLSNYCDLG---QKISIIVH 99 (146)
Q Consensus 69 ~v~l~~~G~~YFiC~~~~HC~~G---mKl~I~V~ 99 (146)
.++.+++|.||..|+. -|-.| |++.|.|.
T Consensus 84 ~~~~~~pG~y~g~CsE--~CG~~Hs~M~~~v~vv 115 (205)
T 1cyx_A 84 HLIANEPGTYDGICAE--ICGPGHSGMKFKAIAT 115 (205)
T ss_dssp EECCSSSEEEEEEECS--CCSTTSTTCCEEEEEE
T ss_pred EEEeCCCeEEEEEccc--ccccchhhceEEEEEE
Confidence 5678999999999986 66654 99999988
No 54
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=73.42 E-value=3.4 Score=33.69 Aligned_cols=33 Identities=15% Similarity=0.456 Sum_probs=27.0
Q ss_pred cEEEecccceEEEEcCCCCCCCCC---CeEEEEeeCCC
Q 041703 68 ATIVLNEQGVFYYLCNLSNYCDLG---QKISIIVHGKN 102 (146)
Q Consensus 68 ~~v~l~~~G~~YFiC~~~~HC~~G---mKl~I~V~~~~ 102 (146)
..++.+++|.||..|++ -|..| |++.|.|.+..
T Consensus 231 ~~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vvs~~ 266 (298)
T 3hb3_B 231 LWFSVDQEGVYFGQCSE--LCGINHAYMPIVVKAVSQE 266 (298)
T ss_dssp EEEECSSSEEEEECCCS--CCSTTTTSCCEEEEEECHH
T ss_pred EEEEeCCCEEEEEEccc--ccCcCccCCeeEEEEEcHH
Confidence 36788999999999996 66654 99999988754
No 55
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=72.22 E-value=3.8 Score=32.61 Aligned_cols=32 Identities=19% Similarity=0.466 Sum_probs=26.4
Q ss_pred cEEEecccceEEEEcCCCCCCCCC---CeEEEEeeCC
Q 041703 68 ATIVLNEQGVFYYLCNLSNYCDLG---QKISIIVHGK 101 (146)
Q Consensus 68 ~~v~l~~~G~~YFiC~~~~HC~~G---mKl~I~V~~~ 101 (146)
..++.+++|.||..|++ -|..| |++.|.|.+.
T Consensus 213 ~~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~~ 247 (262)
T 2gsm_B 213 LWFRAEREGIFFGQCSE--LCGISHAYMPITVKVVSE 247 (262)
T ss_dssp EEEECCSCEEEEECCCS--CCSTTGGGCCEEEEEECH
T ss_pred EEEecCCcEEEEEEChH--hcccCcccCeEEEEEEcH
Confidence 36788999999999986 77765 9999888753
No 56
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=71.75 E-value=2.3 Score=35.43 Aligned_cols=76 Identities=18% Similarity=0.197 Sum_probs=45.3
Q ss_pred CceeeCCEEEEEecCC-----CceEEEEccccCCcccCCCCccccCCCC---cEEEecccceEEEEcC---CCCCCCCCC
Q 041703 24 HLFRIGDSIVFDFETE-----LYNLMQVTALDYQTCKANNPIKVLNSGP---ATIVLNEQGVFYYLCN---LSNYCDLGQ 92 (146)
Q Consensus 24 ~~f~vGD~L~F~y~~~-----~HsV~~V~~~~y~~C~~s~~~~~~~~G~---~~v~l~~~G~~YFiC~---~~~HC~~Gm 92 (146)
.+++.||+|++.+.+. .|++..=-....+ ..........|. ..|+++.+|++||-|- ...|=..||
T Consensus 62 i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~~~d---G~~~~~~i~pg~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~Gl 138 (442)
T 2zoo_A 62 IRVREGDEIEFNLSNHPSSKMPHNIDLHAVTGPG---GGAESSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIANGM 138 (442)
T ss_dssp EEEETTCEEEEEEEECTTCSSCBCCEETTCCSGG---GGGGGCCBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTTC
T ss_pred EEEeCCCEEEEEEEECCCCCCCCCEEecCCcCCC---CCCccEEECCCCEEEEEEEcCCCeEEEEecCCCChHHHHhCcc
Confidence 4678999999988654 3554321100000 000011133443 2566788999999994 345666899
Q ss_pred eEEEEeeCCC
Q 041703 93 KISIIVHGKN 102 (146)
Q Consensus 93 Kl~I~V~~~~ 102 (146)
...+.|....
T Consensus 139 ~G~~iv~~~~ 148 (442)
T 2zoo_A 139 YGLILVEPKE 148 (442)
T ss_dssp EEEEEEECTT
T ss_pred EEEEEEeCCC
Confidence 9999988654
No 57
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=70.58 E-value=3.6 Score=32.08 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=25.7
Q ss_pred EEEecccceEEEEcCCCCCCCCC---CeEEEEeeCC
Q 041703 69 TIVLNEQGVFYYLCNLSNYCDLG---QKISIIVHGK 101 (146)
Q Consensus 69 ~v~l~~~G~~YFiC~~~~HC~~G---mKl~I~V~~~ 101 (146)
.++.+++|.||..|++ -|..| |.+.|.|.+.
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~~~v~vv~~ 216 (227)
T 1v54_B 183 TLMSSRPGLYYGQCSE--ICGSNHSFMPIVLELVPL 216 (227)
T ss_dssp EECCSSCEEEEECCCS--CCSTTGGGCCEEEEEECH
T ss_pred EEecCCcEEEEEEehh--hcccccccCeEEEEEEcH
Confidence 5778999999999986 78776 9999888753
No 58
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=70.15 E-value=3.1 Score=36.30 Aligned_cols=73 Identities=15% Similarity=0.286 Sum_probs=43.2
Q ss_pred CceeeCCEEEEEecCCCce--EEEE-ccccCCcccCCCCccccCCC--CcEEEecccceEEEEcCCCCCCCCCC-eEEEE
Q 041703 24 HLFRIGDSIVFDFETELYN--LMQV-TALDYQTCKANNPIKVLNSG--PATIVLNEQGVFYYLCNLSNYCDLGQ-KISII 97 (146)
Q Consensus 24 ~~f~vGD~L~F~y~~~~Hs--V~~V-~~~~y~~C~~s~~~~~~~~G--~~~v~l~~~G~~YFiC~~~~HC~~Gm-Kl~I~ 97 (146)
..++-|-.|+|.--...-+ ++.+ +.++...|...-- .+..= +.+..| ++|.|||..+...-|++|- ||.|.
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (491)
T 3l6w_A 413 VVVKRGTKIMFMSVDEAVTTPMLNLGSYTAMFKCKVPPF--SFHAFELGKMYSV-ESGDYFMTASTTELCNDNNLRIHVH 489 (491)
T ss_pred eEeecCCEEEEEecccchhhHHHhhhhhhhhhccccCCC--ccCcccccceEec-CCCceEecCChHHHHhCCceeEEEE
Confidence 3566777777743321111 1111 2344456876531 12111 124445 4999999999999999996 99998
Q ss_pred ee
Q 041703 98 VH 99 (146)
Q Consensus 98 V~ 99 (146)
|.
T Consensus 490 ~~ 491 (491)
T 3l6w_A 490 VD 491 (491)
T ss_pred eC
Confidence 73
No 59
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=63.60 E-value=4.2 Score=32.58 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=29.8
Q ss_pred EEEecccceEEEEcCCCCCC-CCCCeEEEEeeCCC
Q 041703 69 TIVLNEQGVFYYLCNLSNYC-DLGQKISIIVHGKN 102 (146)
Q Consensus 69 ~v~l~~~G~~YFiC~~~~HC-~~GmKl~I~V~~~~ 102 (146)
.|+++++|.++|.|-...|+ ..||.-.|.|....
T Consensus 286 ~v~a~~pG~y~~~ch~~~h~~~~Gm~~~~~v~~~~ 320 (333)
T 1mzy_A 286 LYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGEW 320 (333)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTCCEEEEEEESCC
T ss_pred EEEcCCCEEEEEecChhhhHhhCCCEEEEEEcCCC
Confidence 56778899999999999999 99999999998644
No 60
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=62.20 E-value=8.9 Score=30.64 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=46.6
Q ss_pred CceeeCCEEEEEecCC-----CceEEEEccccCCcccCCCCccccCCCC---cEEEecccceEEEEcCCCC----CCCCC
Q 041703 24 HLFRIGDSIVFDFETE-----LYNLMQVTALDYQTCKANNPIKVLNSGP---ATIVLNEQGVFYYLCNLSN----YCDLG 91 (146)
Q Consensus 24 ~~f~vGD~L~F~y~~~-----~HsV~~V~~~~y~~C~~s~~~~~~~~G~---~~v~l~~~G~~YFiC~~~~----HC~~G 91 (146)
.+++.||.|++++.+. .|.+..-..... -+. .+......|. ..|+++++|++||-|...+ |=..|
T Consensus 73 i~v~~Gd~v~v~~~N~~~~~~~hg~~~~~~~~~--~~~-~~~~~i~PG~~~~y~~~~~~~Gt~wyH~h~~~~~~~~~~~G 149 (340)
T 2bw4_A 73 MVVHENDYVELRLINPDTNTLLHNIDFHAATGA--LGG-GALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSG 149 (340)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSG--GGG-GGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred EEEcCCCEEEEEEEeCCCCCccCcceeCCcCCC--CCC-ccceEeCCCCEEEEEEECCCCeEEEEEcCCCCchhhHHhCc
Confidence 4678999999988763 355543111000 000 1111233443 2567788999999998753 55689
Q ss_pred CeEEEEeeCCC
Q 041703 92 QKISIIVHGKN 102 (146)
Q Consensus 92 mKl~I~V~~~~ 102 (146)
|.-.+.|....
T Consensus 150 l~G~~iV~~~~ 160 (340)
T 2bw4_A 150 MNGAIMVLPRD 160 (340)
T ss_dssp CEEEEEEECTB
T ss_pred CEEEEEEccCc
Confidence 99998887654
No 61
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=61.81 E-value=13 Score=29.22 Aligned_cols=78 Identities=18% Similarity=0.153 Sum_probs=45.7
Q ss_pred CceeeCCEEEEEecCC---CceEEEEccccCCcccCCCC--ccccCCCC---cEEEecccceEEEEcCCC---CCCCCCC
Q 041703 24 HLFRIGDSIVFDFETE---LYNLMQVTALDYQTCKANNP--IKVLNSGP---ATIVLNEQGVFYYLCNLS---NYCDLGQ 92 (146)
Q Consensus 24 ~~f~vGD~L~F~y~~~---~HsV~~V~~~~y~~C~~s~~--~~~~~~G~---~~v~l~~~G~~YFiC~~~---~HC~~Gm 92 (146)
.+++.||.|++.+.+. .|++.-=-.. ...-+-... ......|. ..|.++.+|++||-|-.. .|=..||
T Consensus 68 i~~~~Gd~v~v~~~N~~~~~~~iH~HG~~-~~~~DG~p~~~~~~i~PG~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~Gl 146 (288)
T 3gdc_A 68 LWAREGDALRIHFTNAGAHPHTIHFHGVH-RATMDGTPGIGAGSIAPGQSFTYEFDATPFGTHLYHCHQSPLAPHIAKGL 146 (288)
T ss_dssp EEEETTCEEEEEEEECSSSCBCCEESSCC-CGGGSCCTTSTTCSBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTTC
T ss_pred EEEeCCCEEEEEEEeCCCCcccEEecccc-ccccCCCCCccceeECCCCEEEEEEEcCCCccEEEEecCcchHHHHhCcC
Confidence 4788999999988653 2333221100 000110000 01223343 256778899999999875 3556899
Q ss_pred eEEEEeeCCC
Q 041703 93 KISIIVHGKN 102 (146)
Q Consensus 93 Kl~I~V~~~~ 102 (146)
.-.|.|....
T Consensus 147 ~G~liV~~~~ 156 (288)
T 3gdc_A 147 YGGFIVEPKE 156 (288)
T ss_dssp EEEEEEECSS
T ss_pred eEEEEEeCCc
Confidence 9999997654
No 62
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=61.59 E-value=3.5 Score=32.51 Aligned_cols=78 Identities=8% Similarity=0.038 Sum_probs=47.4
Q ss_pred CCCceeeCCEEEEEecC-C----CceEEEEccccCCccc----CCCCc----cccCCCC---cEEEecccceEEEEcCCC
Q 041703 22 SSHLFRIGDSIVFDFET-E----LYNLMQVTALDYQTCK----ANNPI----KVLNSGP---ATIVLNEQGVFYYLCNLS 85 (146)
Q Consensus 22 ~~~~f~vGD~L~F~y~~-~----~HsV~~V~~~~y~~C~----~s~~~----~~~~~G~---~~v~l~~~G~~YFiC~~~ 85 (146)
...+++.||++.|...+ + .|.+..- ...|+--. ...+. .....|. ..+..+.+|.+.|.|-+.
T Consensus 195 ~~l~v~~Ge~vr~~l~N~g~~~~~H~fHlh-G~~f~v~~~g~~~~~~~~~Dtv~v~pg~~~~v~~~~~~pG~~~~hCH~~ 273 (288)
T 3gdc_A 195 FPVKVKQHELVRIHLINVLEYDPINSFHIH-GNFFHYYPTGTMLTPSEYTDTISQVQGQRGILELRFPYPGKFMFHAHKT 273 (288)
T ss_dssp SCEEEETTCCEEEEEEECCCSSSEEEEEET-TCCEEEEETTCCSSCSEEESEEEEETTCEEEEEECCCSCEEEEEECSSH
T ss_pred cccccCCCCEEEEEEEeCCCCCcceeEEEc-CCEEEEEcCCCccCCCceeeEEEeCCCceEEEEEECCCCEEEEEEecCh
Confidence 34688999999988754 2 1444321 11111000 00011 1112233 245568899999999999
Q ss_pred CCCCCCCeEEEEeeC
Q 041703 86 NYCDLGQKISIIVHG 100 (146)
Q Consensus 86 ~HC~~GmKl~I~V~~ 100 (146)
.|=++||...++|.+
T Consensus 274 ~H~~~GM~~~~~V~~ 288 (288)
T 3gdc_A 274 EFAELGWMGFFEVSA 288 (288)
T ss_dssp HHHTTTCEEEEEEEC
T ss_pred HHHhcCCCEEEEEeC
Confidence 999999999999864
No 63
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=59.22 E-value=1.2 Score=35.62 Aligned_cols=77 Identities=13% Similarity=0.118 Sum_probs=32.2
Q ss_pred CCceeeCCEEEEEecCCC-c-eEEEE--ccccCCccc--CCCCccccCCCC---cEEEecccceEEEEcCCCCCCCCCCe
Q 041703 23 SHLFRIGDSIVFDFETEL-Y-NLMQV--TALDYQTCK--ANNPIKVLNSGP---ATIVLNEQGVFYYLCNLSNYCDLGQK 93 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~~~-H-sV~~V--~~~~y~~C~--~s~~~~~~~~G~---~~v~l~~~G~~YFiC~~~~HC~~GmK 93 (146)
..+++.||++.|..-+.. . ....+ ....|.. + ..+.+. +..|. ..|+.+++|.++|.|-+..|-.+||.
T Consensus 216 ~l~v~~G~~vrlrliN~g~~~~~h~~hlhG~~~~~-dG~~~dtv~-l~pger~~v~~~~~~pG~~~~hch~~~H~~~GM~ 293 (306)
T 1sdd_A 216 DITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQ-NHHKISAIT-LVSATSTTANMTVSPEGRWTIASLIPRHFQAGMQ 293 (306)
T ss_dssp CCCCCCC------BBCCCSSSCEECCBCSSTTCEE-TTEECSCCC-EETTCCBC--------CCCCCBCCSTTTGGGTCB
T ss_pred ceEEcCCCEEEEEEEeCCCCCccEEEEECCcEeee-CCEEcceEE-ECCCcEEEEEEEcCCCeEEEEEeCChHHHhcCCe
Confidence 457788999988876531 1 22211 1111111 0 011111 12222 35677889999999999999999999
Q ss_pred EEEEeeCC
Q 041703 94 ISIIVHGK 101 (146)
Q Consensus 94 l~I~V~~~ 101 (146)
..+.|...
T Consensus 294 ~~~~V~~~ 301 (306)
T 1sdd_A 294 AYIDIKNC 301 (306)
T ss_dssp CCC-----
T ss_pred EEEEEecC
Confidence 98888754
No 64
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=57.04 E-value=5.6 Score=32.56 Aligned_cols=66 Identities=15% Similarity=0.277 Sum_probs=41.5
Q ss_pred CceeeCCEEEEEecCC--CceEEEEccccCCcccCCCCcc-ccCCCC---cEEEecccceEEEEcCCCCCCCCC---CeE
Q 041703 24 HLFRIGDSIVFDFETE--LYNLMQVTALDYQTCKANNPIK-VLNSGP---ATIVLNEQGVFYYLCNLSNYCDLG---QKI 94 (146)
Q Consensus 24 ~~f~vGD~L~F~y~~~--~HsV~~V~~~~y~~C~~s~~~~-~~~~G~---~~v~l~~~G~~YFiC~~~~HC~~G---mKl 94 (146)
..+.+|..+.|.-.+. .|+-.. . ++ .++ ..-.|. ..++.+++|.||..|++ -|-.| |++
T Consensus 153 l~lP~g~~V~~~lTS~DViHsf~I-P--~l-------g~k~DaiPGr~n~~~~~~~~~G~y~g~CsE--~CG~~Hs~M~~ 220 (315)
T 1fft_B 153 IAFPANTPVYFKVTSNSVMNSFFI-P--RL-------GSQIYAMAGMQTRLHLIANEPGTYDGISAS--YSGPGFSGMKF 220 (315)
T ss_dssp CCCCSSSEEEEEECBSSSCEEEEE-G--GG-------TEEEEECBTSCEEEEEECCSCBCCEEBCCS--CCSTTTTTCCE
T ss_pred EEEeCCCEEEEEEEeCCccceeee-c--cc-------CcEEeecCCcceeeEEecCCCeEEEEeccc--cchhhHHhccc
Confidence 4677888888887652 233222 1 11 011 112233 36788999999999986 77664 999
Q ss_pred EEEee-CC
Q 041703 95 SIIVH-GK 101 (146)
Q Consensus 95 ~I~V~-~~ 101 (146)
.|.|. +.
T Consensus 221 ~v~vv~~~ 228 (315)
T 1fft_B 221 KAIATPDR 228 (315)
T ss_dssp ECCBCSST
T ss_pred eEEEecCH
Confidence 99888 44
No 65
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=56.15 E-value=7.3 Score=26.10 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=17.5
Q ss_pred cCCCceeeCCEEEEEecCCCceEEEE
Q 041703 21 SSSHLFRIGDSIVFDFETELYNLMQV 46 (146)
Q Consensus 21 a~~~~f~vGD~L~F~y~~~~HsV~~V 46 (146)
+..+.+++||.|+|++... +...|
T Consensus 73 v~~~~L~~GD~lvF~~~~~--~~f~V 96 (104)
T 1yel_A 73 VKDNNLEDGKYLQFIYDRD--RTFYV 96 (104)
T ss_dssp HHHHTCCTTCEEEEEECSS--SEEEE
T ss_pred HHHcCCCCCCEEEEEEcCC--CeEEE
Confidence 3456788999999999864 33444
No 66
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=49.73 E-value=10 Score=29.53 Aligned_cols=30 Identities=20% Similarity=0.468 Sum_probs=27.2
Q ss_pred ccceEEEEcCCCCCCCCCCeEEEEeeCCCC
Q 041703 74 EQGVFYYLCNLSNYCDLGQKISIIVHGKNS 103 (146)
Q Consensus 74 ~~G~~YFiC~~~~HC~~GmKl~I~V~~~~~ 103 (146)
.+|.++|-|-+..|=.+||...+.|.....
T Consensus 239 npG~w~~HCH~~~H~~~GM~g~~~V~~~~~ 268 (276)
T 3kw8_A 239 GAGAWMYHCHVQSHSDMGMVGLFLVKKPDG 268 (276)
T ss_dssp CSEEEEEEECSHHHHHTTCEEEEEEECTTS
T ss_pred CCCeEEEECCCchHhhCCCeEEEEEeCCCC
Confidence 599999999999999999999999998763
No 67
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=46.78 E-value=8.5 Score=25.66 Aligned_cols=16 Identities=19% Similarity=0.669 Sum_probs=12.5
Q ss_pred CceeeCCEEEE-EecCC
Q 041703 24 HLFRIGDSIVF-DFETE 39 (146)
Q Consensus 24 ~~f~vGD~L~F-~y~~~ 39 (146)
+.|++||.|+| .|..+
T Consensus 36 r~~~vGD~l~l~E~~~g 52 (83)
T 3iuw_A 36 RNFQVGDILILEEYMNG 52 (83)
T ss_dssp SCCCTTCEEEEEEEETT
T ss_pred cCCCCCCEEEEEEccCC
Confidence 55999999999 47544
No 68
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=46.32 E-value=13 Score=29.83 Aligned_cols=34 Identities=12% Similarity=0.111 Sum_probs=28.4
Q ss_pred EEEecccceEEEEcCCCCCC-CCCCeEEEEeeCCC
Q 041703 69 TIVLNEQGVFYYLCNLSNYC-DLGQKISIIVHGKN 102 (146)
Q Consensus 69 ~v~l~~~G~~YFiC~~~~HC-~~GmKl~I~V~~~~ 102 (146)
.|+.+++|.++|.|....|| ..||...+.+....
T Consensus 275 ~v~~~~pG~y~l~~h~~~~~~~~g~~a~l~~~g~~ 309 (327)
T 1kbv_A 275 EFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAE 309 (327)
T ss_dssp EEEECSCEEEEEEESSTHHHHHSSCEEEEEEESCC
T ss_pred EEEeCCCeEEEEEeccccccccCCcEEEEEECCCC
Confidence 56778899999999999998 78998888887543
No 69
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=43.73 E-value=22 Score=28.47 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=25.8
Q ss_pred EEEecccceEEEEcCCCC--CCC-CCCeEEEEeeCCC
Q 041703 69 TIVLNEQGVFYYLCNLSN--YCD-LGQKISIIVHGKN 102 (146)
Q Consensus 69 ~v~l~~~G~~YFiC~~~~--HC~-~GmKl~I~V~~~~ 102 (146)
.|+++.+|++||-|.... +=. .||.-.+.|....
T Consensus 92 ~f~~~~~Gt~wyH~H~~~~~q~~~~Gl~G~liV~p~~ 128 (339)
T 2zwn_A 92 KFKADRIGTLWYHCHVNVNEHVGVRGMWGPLIVDPKQ 128 (339)
T ss_dssp EEECCSCEEEEEECCSSHHHHTTTSCCEEEEEEECSS
T ss_pred EEECCCCEEEEEEecCCchhhhhcCCceEeEEecCCC
Confidence 677788999999998643 344 7998888886543
No 70
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=42.75 E-value=18 Score=26.00 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=19.2
Q ss_pred ccCCCceeeCCEEEEEecCCCceEEEE
Q 041703 20 WSSSHLFRIGDSIVFDFETELYNLMQV 46 (146)
Q Consensus 20 Wa~~~~f~vGD~L~F~y~~~~HsV~~V 46 (146)
-+..+.+++||.++|++.....-+++|
T Consensus 111 Fv~dn~L~~GD~cvFeli~~~~~~f~V 137 (146)
T 4i1k_A 111 FTLENNLGEGDVCVFELLRTRDFVLKV 137 (146)
T ss_dssp HHHHTTCCTTCEEEEEECSSSSCEEEE
T ss_pred HHHHcCCCCCCEEEEEEecCCceEEEE
Confidence 345577889999999998643235555
No 71
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=41.21 E-value=11 Score=26.30 Aligned_cols=11 Identities=36% Similarity=0.718 Sum_probs=9.6
Q ss_pred CceeeCCEEEE
Q 041703 24 HLFRIGDSIVF 34 (146)
Q Consensus 24 ~~f~vGD~L~F 34 (146)
+.+++||.|+|
T Consensus 32 ~~ikvGD~I~f 42 (109)
T 2z0t_A 32 RQIKPGDIIIF 42 (109)
T ss_dssp GGCCTTCEEEE
T ss_pred hcCCCCCEEEE
Confidence 36789999999
No 72
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=40.96 E-value=36 Score=21.71 Aligned_cols=46 Identities=9% Similarity=0.174 Sum_probs=28.8
Q ss_pred CCceeeCCEEEEEecCCCceEEEEccccCCcccCCCCc--cccCCCCcEEEec
Q 041703 23 SHLFRIGDSIVFDFETELYNLMQVTALDYQTCKANNPI--KVLNSGPATIVLN 73 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~s~~~--~~~~~G~~~v~l~ 73 (146)
..+|.+||++.=+| .|.+.-+++.-.+++ ..+++ -.|.+ .++.+|.
T Consensus 7 ~~~~~vgd~VmaRW-~Gd~~yYparI~Si~---s~~~~Y~V~fKd-gT~e~L~ 54 (66)
T 2l8d_A 7 NRKYADGEVVMGRW-PGSVLYYEVQVTSYD---DASHLYTVKYKD-GTELALK 54 (66)
T ss_dssp SSSSCSSCEEEEEC-TTSSCEEEEEEEEEE---TTTTEEEEEETT-SCEEEEE
T ss_pred ceEeecCCEEEEEc-CCCccceEEEEEEec---cCCceEEEEecC-CCEEeec
Confidence 46899999999999 566666665433444 33443 34566 4455554
No 73
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=40.57 E-value=20 Score=29.52 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=28.5
Q ss_pred EEEecccceEEEEcCCCCCC-CCCCeEEEEeeCCC
Q 041703 69 TIVLNEQGVFYYLCNLSNYC-DLGQKISIIVHGKN 102 (146)
Q Consensus 69 ~v~l~~~G~~YFiC~~~~HC-~~GmKl~I~V~~~~ 102 (146)
.|+++++|.++|.|....|+ ..||...+.|....
T Consensus 265 ~v~~~~~G~y~~~~~~~~~~~~~g~~a~l~v~~~~ 299 (442)
T 2zoo_A 265 EFKVEVPGTFILVDHSIFRAFNKGALAMLKVEGPD 299 (442)
T ss_dssp EEECCSCEEEEEEESSTHHHHTTSCEEEEEEESCC
T ss_pred EEEcCCCCeEEEEecccccccccCceEEEEecCCC
Confidence 56778899999999998887 78998888887654
No 74
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=39.97 E-value=16 Score=31.96 Aligned_cols=32 Identities=6% Similarity=0.167 Sum_probs=28.6
Q ss_pred EEEecccceEEEEcCCCCCCCCCCeEEEEeeC
Q 041703 69 TIVLNEQGVFYYLCNLSNYCDLGQKISIIVHG 100 (146)
Q Consensus 69 ~v~l~~~G~~YFiC~~~~HC~~GmKl~I~V~~ 100 (146)
.|..+.+|.+.|.|-+..|-.+||...+.|..
T Consensus 296 ~~~~~~pG~w~~hch~~~h~~~Gm~~~~~V~~ 327 (647)
T 1sdd_B 296 EMKASKPGWWLLDTEVGEIQRAGMQTPFLIVD 327 (647)
T ss_dssp EEECCSSEEEEEECCCHHHHTTTCEEEEEEEC
T ss_pred EEEeccceEeecccCcccccccccccceeeec
Confidence 45678899999999999999999999999964
No 75
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=37.62 E-value=48 Score=21.21 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=29.2
Q ss_pred CCceeeCCEEEEEecCCCceEEEEccccCCcccCCCCc--cccCCCCcEEEec
Q 041703 23 SHLFRIGDSIVFDFETELYNLMQVTALDYQTCKANNPI--KVLNSGPATIVLN 73 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~s~~~--~~~~~G~~~v~l~ 73 (146)
..+|.+||++.=+|. +.+.-+++.-..++ ..+++ -.|++ .++.+|.
T Consensus 10 ~~~f~vgd~VmaRW~-Gd~~yYparItSit---s~~~~Y~VkfKd-gT~e~L~ 57 (68)
T 2dig_A 10 SRKFADGEVVRGRWP-GSSLYYEVEILSHD---STSQLYTVKYKD-GTELELK 57 (68)
T ss_dssp CCSSCSSCEEEEECT-TTCCEEEEEEEEEE---TTTTEEEEECTT-SCEEEEE
T ss_pred ceEeecCCEEEEEcc-CCccceEEEEEEec---cCCceEEEEecC-CCEEEec
Confidence 468999999999999 66666665433444 33443 34566 4455554
No 76
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=36.50 E-value=19 Score=29.06 Aligned_cols=31 Identities=19% Similarity=0.429 Sum_probs=27.9
Q ss_pred cccceEEEEcCCCCCCCCCCeEEEEeeCCCC
Q 041703 73 NEQGVFYYLCNLSNYCDLGQKISIIVHGKNS 103 (146)
Q Consensus 73 ~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~~ 103 (146)
+.+|.++|-|-+..|=..||...+.|.....
T Consensus 279 ~~pG~w~~HCHi~~H~~~GM~g~~~V~~~~~ 309 (343)
T 3cg8_A 279 VGAGAWMYHCHVQSHSDMGMVGLFLVKKPDG 309 (343)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTS
T ss_pred CCCeeEEEeCCCHHHHhccCcEEEEEecCCC
Confidence 5799999999999999999999999987664
No 77
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=35.72 E-value=0.45 Score=24.89 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=14.1
Q ss_pred CCceeeCCEEEEEecCCCc
Q 041703 23 SHLFRIGDSIVFDFETELY 41 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~~~H 41 (146)
++.|.|.|.|.|.|....|
T Consensus 4 skpfnvddvlkftftgekh 22 (27)
T 2hzs_I 4 SKPFNVDDVLKFTFTGEKH 22 (27)
T ss_dssp --CCCHHHHHHHHHHCCCC
T ss_pred CCCcChhheEEEEeccccc
Confidence 4688999999999987554
No 78
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=33.71 E-value=36 Score=26.98 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=27.6
Q ss_pred EEEecccceEEEEcCCCC-CCCCCCeEEEEeeCCC
Q 041703 69 TIVLNEQGVFYYLCNLSN-YCDLGQKISIIVHGKN 102 (146)
Q Consensus 69 ~v~l~~~G~~YFiC~~~~-HC~~GmKl~I~V~~~~ 102 (146)
.|.++++|.++|.|.... |=..||.-.|.|....
T Consensus 292 ~v~~~~pG~y~~~~h~~~~h~~~Gm~~~~~V~~~~ 326 (340)
T 2bw4_A 292 FYTFRQPGVYAYVNHNLIEAFELGAAGHFKVTGEW 326 (340)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCC
T ss_pred EEECCCCeeeEEEcCchHHHHhCCCEEEEEECCCC
Confidence 467788999999998863 5578999889888654
No 79
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=33.21 E-value=62 Score=27.71 Aligned_cols=34 Identities=15% Similarity=0.358 Sum_probs=29.2
Q ss_pred EEEec-ccceEEEEcCCCCCCCCCCeEEEEeeCCC
Q 041703 69 TIVLN-EQGVFYYLCNLSNYCDLGQKISIIVHGKN 102 (146)
Q Consensus 69 ~v~l~-~~G~~YFiC~~~~HC~~GmKl~I~V~~~~ 102 (146)
.|+++ ..|++||-|-...|=..||.-.+.|....
T Consensus 92 ~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~ 126 (534)
T 1zpu_A 92 NFTVDYNVGTYWYHSHTDGQYEDGMKGLFIIKDDS 126 (534)
T ss_dssp EEECSSCCEEEEEECCSSSGGGGTCEEEEEEECTT
T ss_pred EEEeCccceeEEEEEcCcccccCcceeeEEeCCCC
Confidence 56777 89999999999888888999999998754
No 80
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=33.04 E-value=12 Score=26.11 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=10.0
Q ss_pred CceeeCCEEEEE
Q 041703 24 HLFRIGDSIVFD 35 (146)
Q Consensus 24 ~~f~vGD~L~F~ 35 (146)
+.+++||.|+|+
T Consensus 33 ~~i~vGD~I~f~ 44 (113)
T 1xne_A 33 KDIKRGDKIIFN 44 (113)
T ss_dssp TTCCTTCEEEET
T ss_pred hccCCCCEEEEc
Confidence 367999999993
No 81
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=32.83 E-value=47 Score=28.61 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=29.2
Q ss_pred EEEecccceEEEEcCCCCCCCCCCeEEEEeeCCC
Q 041703 69 TIVLNEQGVFYYLCNLSNYCDLGQKISIIVHGKN 102 (146)
Q Consensus 69 ~v~l~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~ 102 (146)
.|+++.+|++||-|-...|=..||.-.+.|....
T Consensus 126 ~f~~~q~GT~wYH~H~~~q~~~Gl~G~liV~~~~ 159 (559)
T 2q9o_A 126 RWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPA 159 (559)
T ss_dssp EEECCSCEEEEEEECSTTGGGGTCEEEEEEECCC
T ss_pred EEECCCCEEEEEEEcccchhcCCceEEEEecCCC
Confidence 6778889999999999888888999999888643
No 82
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=31.83 E-value=24 Score=22.80 Aligned_cols=15 Identities=27% Similarity=0.645 Sum_probs=13.2
Q ss_pred CceeeCCEEEEEecC
Q 041703 24 HLFRIGDSIVFDFET 38 (146)
Q Consensus 24 ~~f~vGD~L~F~y~~ 38 (146)
..+++||.|.|.+..
T Consensus 52 ~~lk~Gd~V~F~~~~ 66 (80)
T 2qcp_X 52 SEIKTGDKVAFNFVQ 66 (80)
T ss_dssp CCCCTTCEEEEEEEE
T ss_pred hcCCCCCEEEEEEEE
Confidence 579999999999975
No 83
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=31.67 E-value=20 Score=23.43 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=15.5
Q ss_pred ccCCCceeeCCEEEEEecCC
Q 041703 20 WSSSHLFRIGDSIVFDFETE 39 (146)
Q Consensus 20 Wa~~~~f~vGD~L~F~y~~~ 39 (146)
-+.-..+++||.|.|.+...
T Consensus 42 ~~~l~~lk~Gd~V~F~~~~~ 61 (82)
T 2l55_A 42 AGLPQGLKAGDRVAFSFRLD 61 (82)
T ss_dssp TCCCSSCSTTCEEEEEEEEE
T ss_pred hhHhhcCCCCCEEEEEEEEC
Confidence 33346799999999999863
No 84
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=31.59 E-value=24 Score=23.25 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=13.7
Q ss_pred CCceeeCCEEEEEecC
Q 041703 23 SHLFRIGDSIVFDFET 38 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~ 38 (146)
-..+++||.|.|.|..
T Consensus 59 l~~lk~Gd~V~F~~~~ 74 (88)
T 2vb2_X 59 MSEIKTGDKVAFNFVQ 74 (88)
T ss_dssp ECCCCTTCEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEE
Confidence 3579999999999975
No 85
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=30.28 E-value=66 Score=27.49 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=29.5
Q ss_pred EEEecccceEEEEcCCCCCCCCCCeEEEEeeCCC
Q 041703 69 TIVLNEQGVFYYLCNLSNYCDLGQKISIIVHGKN 102 (146)
Q Consensus 69 ~v~l~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~ 102 (146)
.|+++.+|++||=|-...+=..||.-.|.|....
T Consensus 92 ~f~~~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~ 125 (552)
T 1aoz_A 92 NFTVDNPGTFFYHGHLGMQRSAGLYGSLIVDPPQ 125 (552)
T ss_dssp EEECCSCEEEEEEECSTTTGGGTCEEEEEEECCT
T ss_pred EEECCCCEEEEEEECchhHHhccCeeeEEEeCCc
Confidence 6777889999999998888788999999998764
No 86
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=29.49 E-value=24 Score=27.90 Aligned_cols=31 Identities=23% Similarity=0.516 Sum_probs=27.7
Q ss_pred cccceEEEEcCCCCCCCCCCeEEEEeeCCCC
Q 041703 73 NEQGVFYYLCNLSNYCDLGQKISIIVHGKNS 103 (146)
Q Consensus 73 ~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~~ 103 (146)
+.+|.+.|-|-+..|=.+||...++|.....
T Consensus 260 dnPG~w~~HCHi~~H~~~GM~~~f~V~~~~~ 290 (299)
T 3t9w_A 260 VGPGMWMYHCHVQNHSDMGMAGMFLVRNADG 290 (299)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTS
T ss_pred CCCeeEEEEcCCHHHHhcCCeEEEEEECCCC
Confidence 4589999999999999999999999998764
No 87
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=28.62 E-value=97 Score=26.30 Aligned_cols=78 Identities=13% Similarity=0.077 Sum_probs=0.0
Q ss_pred ceeeCCEEEEEecCCC-------------ceEEEEccccCCcccCCCCccccCCCCc--EEEe-cccceEEEEcCCCCCC
Q 041703 25 LFRIGDSIVFDFETEL-------------YNLMQVTALDYQTCKANNPIKVLNSGPA--TIVL-NEQGVFYYLCNLSNYC 88 (146)
Q Consensus 25 ~f~vGD~L~F~y~~~~-------------HsV~~V~~~~y~~C~~s~~~~~~~~G~~--~v~l-~~~G~~YFiC~~~~HC 88 (146)
+++.||+|+.++.+.. |.+.+-.....|.=-.-..-...-.+.. .|++ ++.|++||-|-...+=
T Consensus 38 ~~~~GD~v~v~v~N~l~~~~~~~~tsiHwHGl~~~~~~~~DGv~~vtq~pI~PG~sftY~f~~~~~~GT~wYHsH~~~q~ 117 (495)
T 3t6v_A 38 AGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQY 117 (495)
T ss_dssp EEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECTTCCEEEEEEECSTTGG
T ss_pred EEECCcEEEEEEEECCCCccCCCceEEEeCCcccCCCccccCCCccccCCCCCCCeEEEEEEeCCCCceeeeeccchhHH
Q ss_pred CCCCeEEEEeeCCC
Q 041703 89 DLGQKISIIVHGKN 102 (146)
Q Consensus 89 ~~GmKl~I~V~~~~ 102 (146)
..||.-.|.|....
T Consensus 118 ~~GL~G~lIV~~~~ 131 (495)
T 3t6v_A 118 CDGLRGPFVVYDPN 131 (495)
T ss_dssp GGTCEEEEEEECTT
T ss_pred hcCceEEEEEcCcc
No 88
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=27.68 E-value=58 Score=25.86 Aligned_cols=34 Identities=9% Similarity=0.113 Sum_probs=27.0
Q ss_pred EEEecccceEEEEcCCCCCCC------CCCeEEEEeeCCC
Q 041703 69 TIVLNEQGVFYYLCNLSNYCD------LGQKISIIVHGKN 102 (146)
Q Consensus 69 ~v~l~~~G~~YFiC~~~~HC~------~GmKl~I~V~~~~ 102 (146)
.|..+.+|.+.|-|-+..|-. .||...|.+....
T Consensus 239 ~~~a~~pG~w~~hCH~~~H~~~g~~~~~Gm~~~i~~~g~~ 278 (318)
T 3g5w_A 239 ILNMDNPGLWMIHDHVDTHTTNGDKPDGGIMTTIEYEEVG 278 (318)
T ss_dssp EEECCSCSEEEEEESSGGGSCBTTBSSCBSEEEEEETTTC
T ss_pred EEECCCCeeEEEEeccHHHhhccCcCCCCCEEEEEECCCC
Confidence 566788999999999999998 4677777776543
No 89
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=27.65 E-value=39 Score=31.62 Aligned_cols=76 Identities=13% Similarity=0.075 Sum_probs=49.9
Q ss_pred CCceeeCCEEEEEecCC-----CceEEEEccccCCcccCCCCc----cccCCCC---cEEEecccceEEEEcCCCCCCCC
Q 041703 23 SHLFRIGDSIVFDFETE-----LYNLMQVTALDYQTCKANNPI----KVLNSGP---ATIVLNEQGVFYYLCNLSNYCDL 90 (146)
Q Consensus 23 ~~~f~vGD~L~F~y~~~-----~HsV~~V~~~~y~~C~~s~~~----~~~~~G~---~~v~l~~~G~~YFiC~~~~HC~~ 90 (146)
..+++.|+++.|.+-+. .|.+. +....|. . .+. ..+..|. ..|+++++|.++|.|....|=..
T Consensus 272 ~l~v~~Ge~vRlRliNag~~~~~~~~~-i~Gh~f~---v-~p~~~dtv~I~pGer~dVlv~~~~pG~y~i~~h~~~h~~~ 346 (1065)
T 2j5w_A 272 GLSMCAEDRVKWYLFGMGNEVDVHAAF-FHGQALT---N-KNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKA 346 (1065)
T ss_dssp CCEEETTCEEEEEEEECSSTTCCEEEE-ETTCCEE---E-TTEEESEEEECBTCEEEEEEECCSCEEEEEEECSHHHHHT
T ss_pred ceEECCCCEEEEEEEcCCcccceeEEE-EcCCEEE---E-CCeeecEEEECCCcEEEEEEEeCCCeeEEEEecCcchhhC
Confidence 45788999999988652 23332 2222222 1 111 1223333 35677889999999999999889
Q ss_pred CCeEEEEeeCCCC
Q 041703 91 GQKISIIVHGKNS 103 (146)
Q Consensus 91 GmKl~I~V~~~~~ 103 (146)
||...+.|.....
T Consensus 347 Gm~~~~~V~~~~~ 359 (1065)
T 2j5w_A 347 GLQAFFQVQECNK 359 (1065)
T ss_dssp TCEEEEEEECSCC
T ss_pred CCEEEEEEecCCC
Confidence 9999999987653
No 90
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=26.97 E-value=45 Score=27.35 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=28.6
Q ss_pred EEEecccceEEEEcCCCCCCCCCCeEEEEeeCCC
Q 041703 69 TIVLNEQGVFYYLCNLSNYCDLGQKISIIVHGKN 102 (146)
Q Consensus 69 ~v~l~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~ 102 (146)
.|..+++|.++|.|-...|=..||...+.|....
T Consensus 402 ~~~~~~pG~~~~hch~~~h~~~Gm~~~~~v~~~~ 435 (447)
T 2dv6_A 402 DFKIDRAGRYILVDHALSRLEHGLVGFLNVDGPK 435 (447)
T ss_dssp EEECCSCEEEEEEESSGGGGGGTCCEEEEECSCS
T ss_pred EEECCCCEEEEEEecCcCccccCCEEEEEEeCCC
Confidence 5667889999999999999888999888886543
No 91
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=25.71 E-value=16 Score=21.08 Aligned_cols=16 Identities=13% Similarity=0.630 Sum_probs=13.4
Q ss_pred hccCCCceeeCCEEEE
Q 041703 19 DWSSSHLFRIGDSIVF 34 (146)
Q Consensus 19 ~Wa~~~~f~vGD~L~F 34 (146)
.|+.+....+||.+.+
T Consensus 1 ~W~~~~~Y~~Gd~Vty 16 (45)
T 1ed7_A 1 AWQVNTAYTAGQLVTY 16 (45)
T ss_dssp CCCSSEEECTTCCEEE
T ss_pred CccCCceEcCCCEEEE
Confidence 4888899999999755
No 92
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=25.71 E-value=36 Score=26.91 Aligned_cols=31 Identities=19% Similarity=0.429 Sum_probs=27.6
Q ss_pred cccceEEEEcCCCCCCCCCCeEEEEeeCCCC
Q 041703 73 NEQGVFYYLCNLSNYCDLGQKISIIVHGKNS 103 (146)
Q Consensus 73 ~~~G~~YFiC~~~~HC~~GmKl~I~V~~~~~ 103 (146)
+.+|.+.|-|-+..|=.+||.-.++|.....
T Consensus 244 ~nPG~w~~HCHi~~H~~~GM~~~f~V~~~d~ 274 (313)
T 3tas_A 244 VGAGAWMYHCHVQSHSDMGMVGLFLVKKPDG 274 (313)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTC
T ss_pred CCCEeEEEEeCChHHHHCCCeEEEEEECCCC
Confidence 3589999999999999999999999998774
No 93
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=25.51 E-value=51 Score=21.17 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=14.2
Q ss_pred CCCceeeCCEEEEEecCC
Q 041703 22 SSHLFRIGDSIVFDFETE 39 (146)
Q Consensus 22 ~~~~f~vGD~L~F~y~~~ 39 (146)
...+|.+||.|+|--..+
T Consensus 26 ~rN~f~~GD~iEi~~P~g 43 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEI 43 (89)
T ss_dssp ESSCBCTTCEEEEESTTS
T ss_pred EcCCcCCCCEEEEEcCCC
Confidence 367899999999876654
No 94
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=23.81 E-value=51 Score=22.93 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=14.0
Q ss_pred CCCceeeCCEEEEEecCC
Q 041703 22 SSHLFRIGDSIVFDFETE 39 (146)
Q Consensus 22 ~~~~f~vGD~L~F~y~~~ 39 (146)
..+.++.||.|+|.....
T Consensus 88 ~~~~L~~GD~~~F~~~~~ 105 (130)
T 1wid_A 88 KEKNLRAGDVVSFSRSNG 105 (130)
T ss_dssp HHTTCCTTCEEEEEECCS
T ss_pred HHcCCCCCCEEEEEEecC
Confidence 445677899999998763
No 95
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=23.54 E-value=43 Score=27.95 Aligned_cols=73 Identities=12% Similarity=0.094 Sum_probs=0.0
Q ss_pred ceeeCCEEEEEecCCC--------ceEEEEccccCCcccCCCCccccCCCCcEEEecc-cceEEEEcCC----CCCCCCC
Q 041703 25 LFRIGDSIVFDFETEL--------YNLMQVTALDYQTCKANNPIKVLNSGPATIVLNE-QGVFYYLCNL----SNYCDLG 91 (146)
Q Consensus 25 ~f~vGD~L~F~y~~~~--------HsV~~V~~~~y~~C~~s~~~~~~~~G~~~v~l~~-~G~~YFiC~~----~~HC~~G 91 (146)
+++.||+|+.++.+.. |.+.+-...|=.. ..++..-.+=...|+++. +|++||=|-. ..|=..|
T Consensus 53 ~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~~DG~~---~~~i~PG~~~~Y~f~~~~~~GT~wYH~H~~~~t~~q~~~G 129 (451)
T 2uxt_A 53 RVWKGDDVKLIYSNRLTENVSMTVAGLQVPGPLMGGP---ARMMSPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNG 129 (451)
T ss_dssp EEETTCEEEEEEEECSSSCBCEEEETCCCCGGGSCSG---GGCBCTTCEECCEEECCSCSEEEEEEECCTTTHHHHHHTT
T ss_pred EEeCCCEEEEEEEECCCCCccEEECCccCCCCCCCCC---cCcCCCCCeEEEEEEcCCCCcceEEecCCCCchhhhHhhc
Q ss_pred CeEEEEeeC
Q 041703 92 QKISIIVHG 100 (146)
Q Consensus 92 mKl~I~V~~ 100 (146)
|.-.+.|..
T Consensus 130 l~G~liV~~ 138 (451)
T 2uxt_A 130 LAGMWLVED 138 (451)
T ss_dssp CEEEEEEEC
T ss_pred ceEEEEEec
No 96
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=22.90 E-value=87 Score=24.90 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=26.3
Q ss_pred EEEecccceEEEEcCCCCCCC------CCCeEEEEeeCCC
Q 041703 69 TIVLNEQGVFYYLCNLSNYCD------LGQKISIIVHGKN 102 (146)
Q Consensus 69 ~v~l~~~G~~YFiC~~~~HC~------~GmKl~I~V~~~~ 102 (146)
.|+.+++|.++|.|-...||. .||...|.+....
T Consensus 240 ~~~~~~pG~w~~hch~~~H~~~~~~~~~gm~a~l~~~g~~ 279 (339)
T 2zwn_A 240 IIEADNPGRFIFHDHVDTHVTAGGKHPGGPITVIEYDGVP 279 (339)
T ss_dssp EEECCSCSEEEEEECCGGGSCBTTBSSCSSEEEEEETTSC
T ss_pred EEEeCCCeeEEEEEechhhcccccccCCCcEEEEEECCCC
Confidence 566788999999999999963 5787777776543
No 97
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=28.12 E-value=18 Score=29.34 Aligned_cols=33 Identities=21% Similarity=0.487 Sum_probs=25.6
Q ss_pred cEEEecccceEEEEcCCCCCCCCC---CeEEEEeeCCC
Q 041703 68 ATIVLNEQGVFYYLCNLSNYCDLG---QKISIIVHGKN 102 (146)
Q Consensus 68 ~~v~l~~~G~~YFiC~~~~HC~~G---mKl~I~V~~~~ 102 (146)
..++.+++|.||..|++ -|..| |.+.|.+.+..
T Consensus 183 ~~~~~~~~G~y~g~c~e--~cG~~Hs~M~~~v~~vs~~ 218 (337)
T 2yev_B 183 ISFEPKEPGLYYGFCAE--LCGASHARMLFRVVVLPKE 218 (337)
Confidence 36778999999999996 67664 88887776553
No 98
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=20.88 E-value=66 Score=29.09 Aligned_cols=76 Identities=11% Similarity=0.068 Sum_probs=0.0
Q ss_pred CceeeCCEEEEEecCC--------CceEEEEccccCCcccCCCCccccCCCCc---EEEec----------ccceEEEEc
Q 041703 24 HLFRIGDSIVFDFETE--------LYNLMQVTALDYQTCKANNPIKVLNSGPA---TIVLN----------EQGVFYYLC 82 (146)
Q Consensus 24 ~~f~vGD~L~F~y~~~--------~HsV~~V~~~~y~~C~~s~~~~~~~~G~~---~v~l~----------~~G~~YFiC 82 (146)
.++++||+|+..+.+. -|.+.+-...+ =...........|.+ .|++. ..|++||-|
T Consensus 201 Ir~~~GD~v~v~~~N~l~~~~siH~HG~~~~~~~~---dG~~~~~~~I~PG~~~tY~f~~~~~~gp~~~d~~~Gt~wYHs 277 (770)
T 2r7e_B 201 IRAEVEDNIMVTFRNQASRPYSFYSSLISYEEDQR---QGAEPRKNFVKPNETKTYFWKVQHHMAPTKDEFDCKAWAYSS 277 (770)
T ss_dssp CCCCSSSCEEEEEECCSSSCCCCCBTTCCCCCCSS---SCTTTTSSCCCSSCEEEEECCCCSSSSCCSSCCSEEEEEECC
T ss_pred EEEEcCCEEEEEEEECCCCCcceeecccccccccC---CCCcCccCccCCCCeEEEEEEecCccCCccCCCCCeeEEeec
Q ss_pred CCCC--CCCCCCeEEEEeeCCC
Q 041703 83 NLSN--YCDLGQKISIIVHGKN 102 (146)
Q Consensus 83 ~~~~--HC~~GmKl~I~V~~~~ 102 (146)
.+.. |...||.-.|.|....
T Consensus 278 h~~~~~q~~~GL~G~liV~~~~ 299 (770)
T 2r7e_B 278 DVDLEKDVHSGLIGPLLVCHTN 299 (770)
T ss_dssp CSSSSHHHHTSCCEEEEEECST
T ss_pred cCCcHHHHhCCceeeEEECCCc
No 99
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=20.23 E-value=1.5e+02 Score=24.86 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=0.0
Q ss_pred ceeeCCEEEEEecCCC-------------ceEEEEccccCCcccCCCCccccCCCCcEEEec---ccceEEEEcCCCCCC
Q 041703 25 LFRIGDSIVFDFETEL-------------YNLMQVTALDYQTCKANNPIKVLNSGPATIVLN---EQGVFYYLCNLSNYC 88 (146)
Q Consensus 25 ~f~vGD~L~F~y~~~~-------------HsV~~V~~~~y~~C~~s~~~~~~~~G~~~v~l~---~~G~~YFiC~~~~HC 88 (146)
+++.||+|+.++.+.. |.+.+......|.=-.-..-...-.+..+..+. .+|++||=|-...+=
T Consensus 37 ~~~~Gd~v~v~v~N~l~~~~~~~~tsiHwHG~~~~~~~~~DGv~~vtq~~I~PG~~~~Y~f~~~~~~GT~wYH~H~~~q~ 116 (503)
T 1hfu_A 37 RGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQY 116 (503)
T ss_dssp EEETTCCEEEEEEECCCCTTSCCSBCEEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEECCTTCCEEEEEEECSTTGG
T ss_pred EEeCCCEEEEEEEeCCCCccCCCcccEeccceeccCCCccCCCcccccCCcCCCCeEEEEEEeCCCCccEEEEecchhhh
Q ss_pred CCCCeEEEEeeCCC
Q 041703 89 DLGQKISIIVHGKN 102 (146)
Q Consensus 89 ~~GmKl~I~V~~~~ 102 (146)
..||.-.+.|....
T Consensus 117 ~~Gl~G~liV~~~~ 130 (503)
T 1hfu_A 117 CDGLRGPMVIYDDN 130 (503)
T ss_dssp GGTCEEEEEEECTT
T ss_pred hCcceeeEEEcCCC
Done!