BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041704
(86 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P51414|RL261_ARATH 60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A
PE=2 SV=2
Length = 146
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 37/60 (61%), Gaps = 11/60 (18%)
Query: 2 SMSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYEPIFDPRIPLEPVGHSSV 61
SM +RKDDEVQ+V GTYKGREGK VQ++ +R V+ E RI E V ++V
Sbjct: 46 SMPIRKDDEVQIVRGTYKGREGKVVQVY------RRKWVIHIE-----RITREKVNGTTV 94
>sp|Q9FJX2|RL262_ARATH 60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B
PE=2 SV=1
Length = 146
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 37/60 (61%), Gaps = 11/60 (18%)
Query: 2 SMSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYEPIFDPRIPLEPVGHSSV 61
SM +RKDDEVQVV GT+KGREGK +Q++ +R V+ E RI E V S+V
Sbjct: 46 SMPIRKDDEVQVVRGTFKGREGKVMQVY------RRKWVIHIE-----RITREKVNGSTV 94
>sp|Q39411|RL26_BRARA 60S ribosomal protein L26 OS=Brassica rapa GN=RPL26 PE=2 SV=1
Length = 146
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 11/60 (18%)
Query: 2 SMSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYEPIFDPRIPLEPVGHSSV 61
SM +RKDDE Q+V GTYKGREGK Q++ +R V+ E R+ E V ++V
Sbjct: 46 SMPIRKDDEXQIVRGTYKGREGKLXQVY------RRKXVIHIE-----RLTREKVNGTTV 94
>sp|Q2I0I6|RL26_AILME 60S ribosomal protein L26 OS=Ailuropoda melanoleuca GN=RPL26 PE=2
SV=1
Length = 145
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
Query: 2 SMSVRKDDEVQVVGGTYKGRE-GKFVQIF 29
SM +RKDDEVQVV G YKG++ GK VQ++
Sbjct: 46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVY 74
>sp|P47832|RL26_CHICK 60S ribosomal protein L26 (Fragment) OS=Gallus gallus GN=RPL26
PE=2 SV=1
Length = 128
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
Query: 2 SMSVRKDDEVQVVGGTYKGRE-GKFVQIF 29
SM +RKDDEVQVV G YKG++ GK VQ++
Sbjct: 29 SMPIRKDDEVQVVRGHYKGQQIGKVVQVY 57
>sp|P61255|RL26_MOUSE 60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=2 SV=1
Length = 145
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
Query: 2 SMSVRKDDEVQVVGGTYKGRE-GKFVQIF 29
SM +RKDDEVQVV G YKG++ GK VQ++
Sbjct: 46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVY 74
>sp|P61256|RL26_MACFA 60S ribosomal protein L26 OS=Macaca fascicularis GN=RPL26 PE=2
SV=1
Length = 145
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
Query: 2 SMSVRKDDEVQVVGGTYKGRE-GKFVQIF 29
SM +RKDDEVQVV G YKG++ GK VQ++
Sbjct: 46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVY 74
>sp|P61254|RL26_HUMAN 60S ribosomal protein L26 OS=Homo sapiens GN=RPL26 PE=1 SV=1
Length = 145
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
Query: 2 SMSVRKDDEVQVVGGTYKGRE-GKFVQIF 29
SM +RKDDEVQVV G YKG++ GK VQ++
Sbjct: 46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVY 74
>sp|P61257|RL26_BOVIN 60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1
Length = 145
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
Query: 2 SMSVRKDDEVQVVGGTYKGRE-GKFVQIF 29
SM +RKDDEVQVV G YKG++ GK VQ++
Sbjct: 46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVY 74
>sp|Q9UNX3|RL26L_HUMAN 60S ribosomal protein L26-like 1 OS=Homo sapiens GN=RPL26L1 PE=1
SV=1
Length = 145
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
Query: 2 SMSVRKDDEVQVVGGTYKGRE-GKFVQIF 29
SM +RKDDEVQVV G YKG++ GK VQ++
Sbjct: 46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVY 74
>sp|P12749|RL26_RAT 60S ribosomal protein L26 OS=Rattus norvegicus GN=Rpl26 PE=1 SV=1
Length = 145
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
Query: 2 SMSVRKDDEVQVVGGTYKGRE-GKFVQIF 29
SM +RKDDEVQVV G YKG++ GK VQ++
Sbjct: 46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVY 74
>sp|Q23F79|RL26_TETTS 60S ribosomal protein L26 OS=Tetrahymena thermophila (strain
SB210) GN=RPL26 PE=1 SV=2
Length = 135
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 2 SMSVRKDDEVQVVGGTYKGREGKFVQIF 29
SM VRKDDEV +V G +KG +GK Q++
Sbjct: 46 SMPVRKDDEVLIVRGKFKGNKGKVTQVY 73
>sp|Q95WA0|RL26_LITLI 60S ribosomal protein L26 OS=Littorina littorea GN=RPL26 PE=2
SV=1
Length = 144
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 7/46 (15%)
Query: 2 SMSVRKDDEVQVVGGTYKGRE-GKFVQIFAIFSGVKRDLVVSYEPI 46
SM +RKDDEVQVV G +KG++ GK VQ++ ++ VV E I
Sbjct: 46 SMPIRKDDEVQVVRGHFKGQQVGKVVQVY------RKKFVVHIERI 85
>sp|P78946|RL26_SCHPO 60S ribosomal protein L26 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl26 PE=3 SV=1
Length = 126
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 2 SMSVRKDDEVQVVGGTYKGREGKFVQIF 29
S+ VR+DD++ V+ G+ KGREGK ++
Sbjct: 46 SLPVRRDDQITVIRGSNKGREGKITSVY 73
>sp|Q54QM8|RL26_DICDI 60S ribosomal protein L26 OS=Dictyostelium discoideum GN=rpl26
PE=3 SV=1
Length = 139
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 2 SMSVRKDDEVQVVGGTYKGREGKFVQIF 29
S+ +RKDDEV+VV G K EGK V +
Sbjct: 46 SLPIRKDDEVRVVCGDNKNHEGKVVACY 73
>sp|P53221|RL26B_YEAST 60S ribosomal protein L26-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL26B PE=1 SV=2
Length = 127
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 2 SMSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLV 40
++ +R+DDEV VV G+ KG+EGK ++ + V+ D V
Sbjct: 47 ALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKV 85
>sp|P05743|RL26A_YEAST 60S ribosomal protein L26-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL26A PE=1 SV=3
Length = 127
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 2 SMSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLV 40
++ +R+DDEV VV G+ KG+EGK ++ + V+ D V
Sbjct: 47 ALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKV 85
>sp|C5CGQ3|RL24_KOSOT 50S ribosomal protein L24 OS=Kosmotoga olearia (strain TBF
19.5.1) GN=rplX PE=3 SV=1
Length = 107
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 1 MSMSVRKDDEVQVVGGTYKGREGKFVQIF 29
M M ++KDD V+V+ G YKG+ GK ++
Sbjct: 1 MGMRIKKDDTVKVISGEYKGKIGKVLKTL 29
>sp|B4SBV8|RL24_PELPB 50S ribosomal protein L24 OS=Pelodictyon phaeoclathratiforme
(strain DSM 5477 / BU-1) GN=rplX PE=3 SV=1
Length = 80
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 1 MSMSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGV 35
+ + V+K+D V V+ G KG+EGK +++F I S V
Sbjct: 8 VKLHVKKNDSVVVISGNDKGKEGKILKVFPIKSRV 42
>sp|Q8KAI3|RL24_CHLTE 50S ribosomal protein L24 OS=Chlorobium tepidum (strain ATCC
49652 / DSM 12025 / TLS) GN=rplX PE=3 SV=1
Length = 80
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 1 MSMSVRKDDEVQVVGGTYKGREGKFVQIF 29
+ + VRK+DEV V+ G KG+ GK +++F
Sbjct: 8 VKLHVRKNDEVTVIAGNDKGKSGKVLKVF 36
>sp|Q98PZ3|RL24_MYCPU 50S ribosomal protein L24 OS=Mycoplasma pulmonis (strain UAB
CTIP) GN=rplX PE=3 SV=1
Length = 108
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 1 MSMSVRKDDEVQVVGGTYKGREGKFVQIF 29
M +RK+DEV V+ G+YKG +G +++
Sbjct: 1 MKTKLRKNDEVIVIAGSYKGTKGTILKVL 29
>sp|A5FZV4|RL24_ACICJ 50S ribosomal protein L24 OS=Acidiphilium cryptum (strain JF-5)
GN=rplX PE=3 SV=1
Length = 106
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 1 MSMSVRKDDEVQVVGGTYKGREGKFVQIF-----AIFSGV 35
M+ +RK D V V+ G KGREG+ +++ A+ SGV
Sbjct: 1 MAARIRKGDRVVVIAGASKGREGEVLRVLPAENKAVVSGV 40
>sp|Q9YF83|RL24_AERPE 50S ribosomal protein L24P OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rpl24p PE=3 SV=1
Length = 132
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 2 SMSVRKDDEVQVVGGTYKGREGKFVQI 28
S+ VRK D+V+V+ G +KG EGK V++
Sbjct: 45 SLPVRKGDKVRVMRGDFKGHEGKVVKV 71
>sp|B4RT39|RL24_ALTMD 50S ribosomal protein L24 OS=Alteromonas macleodii (strain DSM
17117 / Deep ecotype) GN=rplX PE=3 SV=1
Length = 104
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 1 MSMSVRKDDEVQVVGGTYKGREGKFVQIF 29
M+ +R+DDEV V+ G KG++GK +++
Sbjct: 1 MANKIRRDDEVVVLAGKDKGKQGKVLRVL 29
>sp|Q1LTC7|RL24_BAUCH 50S ribosomal protein L24 OS=Baumannia cicadellinicola subsp.
Homalodisca coagulata GN=rplX PE=3 SV=1
Length = 104
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 1 MSMSVRKDDEVQVVGGTYKGREGKFVQIF----AIFSGV 35
M+ +R DEV V+ G YKG+ G + I+ AI SG+
Sbjct: 1 MATKIRCTDEVIVLTGKYKGKRGIVIAIYSLGKAIVSGI 39
>sp|A5IYX5|RL24_MYCAP 50S ribosomal protein L24 OS=Mycoplasma agalactiae (strain PG2)
GN=rplX PE=3 SV=1
Length = 108
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 1 MSMSVRKDDEVQVVGGTYKGREGKFVQI 28
M + +K+DEV V+ G++KG+ G+ V++
Sbjct: 1 MKIKFKKNDEVIVIAGSHKGKTGRIVKV 28
>sp|Q5QXW9|RL24_IDILO 50S ribosomal protein L24 OS=Idiomarina loihiensis (strain ATCC
BAA-735 / DSM 15497 / L2-TR) GN=rplX PE=3 SV=1
Length = 104
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 1 MSMSVRKDDEVQVVGGTYKGREGKFVQIF 29
M+ +++DDEV V+ G KG++GK +++
Sbjct: 1 MAAKIKRDDEVVVLAGKDKGKQGKVLKVL 29
>sp|C5CC51|RL24_MICLC 50S ribosomal protein L24 OS=Micrococcus luteus (strain ATCC 4698
/ DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB 9278 / NCTC
2665 / VKM Ac-2230) GN=rplX PE=3 SV=1
Length = 113
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 4 SVRKDDEVQVVGGTYKGREGKFVQIF 29
++KDD VQV+ G KG++GK +++F
Sbjct: 3 KIKKDDLVQVISGKDKGKQGKVLRVF 28
>sp|P33103|RL24_MICLU 50S ribosomal protein L24 OS=Micrococcus luteus GN=rplX PE=3 SV=1
Length = 113
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 4 SVRKDDEVQVVGGTYKGREGKFVQIF 29
++KDD VQV+ G KG++GK +++F
Sbjct: 3 KIKKDDLVQVISGKDKGKQGKVLRVF 28
>sp|C1DKM4|RL24_AZOVD 50S ribosomal protein L24 OS=Azotobacter vinelandii (strain DJ /
ATCC BAA-1303) GN=rplX PE=3 SV=1
Length = 104
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 4 SVRKDDEVQVVGGTYKGREGKFVQIFA----IFSGV 35
+R+DDE+ V+ G KG+ GK +++ A + SGV
Sbjct: 3 KIRRDDEIIVIAGKDKGKRGKVLKVLADDRLVVSGV 38
>sp|A6VLJ9|RL24_ACTSZ 50S ribosomal protein L24 OS=Actinobacillus succinogenes (strain
ATCC 55618 / 130Z) GN=rplX PE=3 SV=1
Length = 103
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 1 MSMSVRKDDEVQVVGGTYKGREGKFVQIF----AIFSGVKRDLVVSYE 44
M+ +R++DEV V+ G KG+ GK Q+ I GVK ++ +E
Sbjct: 1 MAAKIRQNDEVIVLAGKDKGKRGKVTQVLPNGKVIVEGVK--IITKHE 46
>sp|B3PK48|RL24_CELJU 50S ribosomal protein L24 OS=Cellvibrio japonicus (strain
Ueda107) GN=rplX PE=3 SV=1
Length = 105
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 4 SVRKDDEVQVVGGTYKGREGKFVQIFA----IFSGV 35
+++DDEV V+ G KG+ GK V++ A I SG+
Sbjct: 3 KIKRDDEVIVIAGRDKGKRGKVVRVLAEDRLIVSGI 38
>sp|Q9HWE6|RL24_PSEAE 50S ribosomal protein L24 OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rplX PE=3
SV=1
Length = 104
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 4 SVRKDDEVQVVGGTYKGREGKFVQIFA 30
+R+DDEV V+ G KG+ GK +++ A
Sbjct: 3 KIRRDDEVIVIAGKDKGKRGKVLKVLA 29
>sp|Q02T69|RL24_PSEAB 50S ribosomal protein L24 OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=rplX PE=3 SV=1
Length = 104
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 4 SVRKDDEVQVVGGTYKGREGKFVQIFA 30
+R+DDEV V+ G KG+ GK +++ A
Sbjct: 3 KIRRDDEVIVIAGKDKGKRGKVLKVLA 29
>sp|B7V655|RL24_PSEA8 50S ribosomal protein L24 OS=Pseudomonas aeruginosa (strain
LESB58) GN=rplX PE=3 SV=1
Length = 104
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 4 SVRKDDEVQVVGGTYKGREGKFVQIFA 30
+R+DDEV V+ G KG+ GK +++ A
Sbjct: 3 KIRRDDEVIVIAGKDKGKRGKVLKVLA 29
>sp|A6UZJ9|RL24_PSEA7 50S ribosomal protein L24 OS=Pseudomonas aeruginosa (strain PA7)
GN=rplX PE=3 SV=1
Length = 104
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 4 SVRKDDEVQVVGGTYKGREGKFVQIFA 30
+R+DDEV V+ G KG+ GK +++ A
Sbjct: 3 KIRRDDEVIVIAGKDKGKRGKVLKVLA 29
>sp|B5ELZ0|RL24_ACIF5 50S ribosomal protein L24 OS=Acidithiobacillus ferrooxidans
(strain ATCC 53993) GN=rplX PE=3 SV=1
Length = 106
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 3 MSVRKDDEVQVVGGTYKGREGKFVQIF 29
+ VRKDDEV V+ G KG+ GK +++
Sbjct: 2 LKVRKDDEVVVLAGKDKGKRGKVLKVL 28
>sp|B7J478|RL24_ACIF2 50S ribosomal protein L24 OS=Acidithiobacillus ferrooxidans
(strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rplX
PE=3 SV=1
Length = 106
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 3 MSVRKDDEVQVVGGTYKGREGKFVQIF 29
+ VRKDDEV V+ G KG+ GK +++
Sbjct: 2 LKVRKDDEVVVLAGKDKGKRGKVLKVL 28
>sp|Q9CL41|RL24_PASMU 50S ribosomal protein L24 OS=Pasteurella multocida (strain Pm70)
GN=rplX PE=3 SV=1
Length = 103
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 1 MSMSVRKDDEVQVVGGTYKGREGKFVQIF 29
M+ +R++DEV V+ G KG+ GK Q+
Sbjct: 1 MAAKIRQNDEVIVLAGKSKGKRGKVTQVL 29
>sp|Q4K544|RL24_PSEF5 50S ribosomal protein L24 OS=Pseudomonas fluorescens (strain Pf-5
/ ATCC BAA-477) GN=rplX PE=3 SV=1
Length = 104
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 4 SVRKDDEVQVVGGTYKGREGKFVQIFA 30
+R+DDE+ V+ G KG+ GK +++ A
Sbjct: 3 KIRRDDEIIVIAGKDKGKRGKVLKVLA 29
>sp|Q7MYG2|RL24_PHOLL 50S ribosomal protein L24 OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=rplX PE=3 SV=1
Length = 104
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 1 MSMSVRKDDEVQVVGGTYKGREGKFVQIFA 30
M+ +R+DDEV V+ G KG+ GK Q+ +
Sbjct: 1 MAAKIRRDDEVIVLTGKDKGKRGKVKQVLS 30
>sp|C3K2W5|RL24_PSEFS 50S ribosomal protein L24 OS=Pseudomonas fluorescens (strain
SBW25) GN=rplX PE=3 SV=1
Length = 104
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 4 SVRKDDEVQVVGGTYKGREGKFVQIFA 30
+R+DDE+ V+ G KG+ GK +++ A
Sbjct: 3 KIRRDDEIIVIAGKDKGKRGKVLKVLA 29
>sp|A4XZ79|RL24_PSEMY 50S ribosomal protein L24 OS=Pseudomonas mendocina (strain ymp)
GN=rplX PE=3 SV=1
Length = 104
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 4 SVRKDDEVQVVGGTYKGREGKFVQIFA 30
+R+DDE+ V+ G KG+ GK +++ A
Sbjct: 3 KIRRDDEIIVIAGKDKGKRGKVLKVLA 29
>sp|Q3K5Z9|RL24_PSEPF 50S ribosomal protein L24 OS=Pseudomonas fluorescens (strain
Pf0-1) GN=rplX PE=3 SV=1
Length = 104
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 4 SVRKDDEVQVVGGTYKGREGKFVQIFA 30
+R+DDE+ V+ G KG+ GK +++ A
Sbjct: 3 KIRRDDEIIVIAGKDKGKRGKVLKVLA 29
>sp|B3EUL2|RL24_AMOA5 50S ribosomal protein L24 OS=Amoebophilus asiaticus (strain 5a2)
GN=rplX PE=3 SV=1
Length = 115
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 1 MSMSVRKDDEVQVVGGTYKGREGKFVQIF-----AIFSGV 35
+ + ++K D VQV+ G Y+ ++G +++F AI GV
Sbjct: 9 LKLHIKKGDTVQVLSGNYRKKQGTVLKVFPKTYRAIVEGV 48
>sp|Q4ZMQ5|RL24_PSEU2 50S ribosomal protein L24 OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=rplX PE=3 SV=1
Length = 104
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 4 SVRKDDEVQVVGGTYKGREGKFVQIFA 30
+R+DDE+ V+ G KG+ GK +++ A
Sbjct: 3 KIRRDDEIIVIAGKDKGKRGKVLKVLA 29
>sp|B3EP50|RL24_CHLPB 50S ribosomal protein L24 OS=Chlorobium phaeobacteroides (strain
BS1) GN=rplX PE=3 SV=1
Length = 80
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 1 MSMSVRKDDEVQVVGGTYKGREGKFVQIF 29
+ + VRK+D V V+ G KG+ GK +++F
Sbjct: 8 VKLHVRKNDTVLVIAGNDKGKTGKVLRVF 36
>sp|Q889W0|RL24_PSESM 50S ribosomal protein L24 OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=rplX PE=3 SV=1
Length = 104
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 4 SVRKDDEVQVVGGTYKGREGKFVQIFA 30
+R+DDE+ V+ G KG+ GK +++ A
Sbjct: 3 KIRRDDEIIVIAGKDKGKRGKVLKVLA 29
>sp|Q48D47|RL24_PSE14 50S ribosomal protein L24 OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=rplX PE=3 SV=1
Length = 104
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 4 SVRKDDEVQVVGGTYKGREGKFVQIFA 30
+R+DDE+ V+ G KG+ GK +++ A
Sbjct: 3 KIRRDDEIIVIAGKDKGKRGKVLKVLA 29
>sp|Q25417|ALDH2_LEITA Aldehyde dehydrogenase, mitochondrial OS=Leishmania tarentolae
GN=ALDH2 PE=1 SV=1
Length = 498
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 13 VVGGTYKGREGKFVQIFAIFSGVKRDLVVSYEPIFDP 49
V GG G +G FVQ IFS VK D+ + E IF P
Sbjct: 365 VTGGKKIGDKGYFVQP-TIFSDVKEDMRICKEEIFGP 400
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,938,063
Number of Sequences: 539616
Number of extensions: 1056493
Number of successful extensions: 2486
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2268
Number of HSP's gapped (non-prelim): 225
length of query: 86
length of database: 191,569,459
effective HSP length: 56
effective length of query: 30
effective length of database: 161,350,963
effective search space: 4840528890
effective search space used: 4840528890
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)