Query 041704
Match_columns 86
No_of_seqs 148 out of 1010
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 16:45:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041704.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041704hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_Y L33, YL33, 60S ribosoma 99.9 1.6E-22 5.4E-27 142.2 6.1 65 1-71 46-114 (127)
2 4a17_S RPL26, 60S ribosomal pr 99.8 5.3E-22 1.8E-26 140.9 5.3 64 1-70 45-112 (135)
3 3iz5_Y 60S ribosomal protein L 99.8 1.4E-21 4.7E-26 140.8 6.3 64 1-70 45-112 (150)
4 3j21_U 50S ribosomal protein L 99.8 5.2E-21 1.8E-25 133.1 6.7 65 1-71 42-110 (121)
5 1vq8_T 50S ribosomal protein L 99.8 8.8E-20 3E-24 126.9 6.6 65 1-71 39-107 (120)
6 2zjr_R 50S ribosomal protein L 99.8 5E-19 1.7E-23 121.7 5.9 64 1-70 12-90 (115)
7 3v2d_Y 50S ribosomal protein L 99.8 9.6E-19 3.3E-23 119.9 6.4 63 2-70 4-81 (110)
8 2zkr_t 60S ribosomal protein L 99.7 1.1E-18 3.8E-23 124.6 5.6 65 1-71 45-114 (145)
9 3r8s_U 50S ribosomal protein L 99.7 2.3E-18 8E-23 116.6 4.7 59 3-68 2-76 (102)
10 3bbo_W Ribosomal protein L24; 99.7 1E-17 3.4E-22 124.5 1.1 60 3-68 67-141 (191)
11 2ftc_N Mitochondrial ribosomal 99.6 3.3E-16 1.1E-20 105.0 6.5 57 8-70 1-71 (96)
12 1nz9_A Transcription antitermi 98.1 5.3E-06 1.8E-10 49.1 4.8 36 3-44 3-38 (58)
13 3p8b_B Transcription antitermi 97.4 0.00032 1.1E-08 47.8 5.8 57 3-65 90-146 (152)
14 2ckk_A KIN17; beta barrel, rib 97.0 0.0013 4.4E-08 45.1 5.1 35 3-44 70-104 (127)
15 2e6z_A Transcription elongatio 96.9 0.00055 1.9E-08 41.2 2.8 36 3-44 6-41 (59)
16 2do3_A Transcription elongatio 96.8 0.0012 4.2E-08 42.0 3.9 26 4-29 17-42 (69)
17 2jvv_A Transcription antitermi 96.6 0.0028 9.5E-08 44.0 4.8 34 4-43 127-160 (181)
18 2xhc_A Transcription antitermi 94.7 0.043 1.5E-06 42.9 5.1 35 4-44 298-332 (352)
19 1m1h_A Transcription antitermi 92.9 0.018 6.3E-07 43.0 0.0 35 4-44 194-228 (248)
20 3iz5_N 60S ribosomal protein L 91.2 0.22 7.7E-06 34.8 3.9 55 5-69 7-61 (134)
21 2e70_A Transcription elongatio 89.8 0.4 1.4E-05 30.4 3.8 29 8-44 21-49 (71)
22 2joy_A 50S ribosomal protein L 89.4 0.98 3.3E-05 29.3 5.6 59 4-69 3-62 (96)
23 3j21_5 50S ribosomal protein L 88.5 0.8 2.7E-05 29.3 4.6 58 4-68 3-60 (83)
24 3izc_N 60S ribosomal protein R 88.5 0.83 2.9E-05 32.1 5.1 57 5-69 15-71 (138)
25 4a18_F RPL14; ribosome, eukary 87.1 1 3.4E-05 31.3 4.7 55 5-69 7-61 (126)
26 4a18_N RPL27, ribosomal protei 79.9 6.5 0.00022 27.8 6.5 59 4-68 4-87 (144)
27 4a18_E RPL6; ribosome, eukaryo 78.5 5.5 0.00019 29.4 6.0 57 4-67 44-101 (191)
28 3kbg_A 30S ribosomal protein S 70.6 5.5 0.00019 29.6 4.3 50 3-65 137-190 (213)
29 3iz6_D 40S ribosomal protein S 69.3 8.4 0.00029 29.5 5.2 60 3-73 173-237 (265)
30 1sem_A SEM-5; SRC-homology 3 ( 66.9 5 0.00017 21.9 2.7 15 3-17 19-33 (58)
31 2ege_A Uncharacterized protein 65.4 5.5 0.00019 23.3 2.8 13 3-15 31-43 (75)
32 2bzy_A CRK-like protein, CRKL 65.0 5.5 0.00019 22.7 2.7 14 3-16 20-33 (67)
33 2ew3_A SH3-containing GRB2-lik 64.9 5.4 0.00018 23.1 2.7 14 3-16 20-33 (68)
34 2g6f_X RHO guanine nucleotide 64.1 6.1 0.00021 21.8 2.7 15 3-17 21-35 (59)
35 1qp2_A Protein (PSAE protein); 63.6 12 0.0004 23.9 4.2 46 5-52 2-49 (70)
36 1uti_A GRB2-related adaptor pr 63.3 6.4 0.00022 21.5 2.7 14 3-16 18-31 (58)
37 2nwm_A Vinexin; cell adhesion; 61.7 6.8 0.00023 22.5 2.7 15 3-17 18-32 (65)
38 1w70_A Neutrophil cytosol fact 61.5 7.1 0.00024 21.6 2.7 15 3-17 21-35 (60)
39 2xzm_W 40S ribosomal protein S 61.1 16 0.00055 27.9 5.4 58 3-72 175-238 (260)
40 2eyx_A V-CRK sarcoma virus CT1 60.6 5.6 0.00019 22.7 2.2 15 3-17 25-39 (67)
41 2ak5_A RHO guanine nucleotide 60.5 7.6 0.00026 21.6 2.7 15 3-17 23-37 (64)
42 2vwf_A Growth factor receptor- 60.0 8 0.00027 21.0 2.7 14 3-16 19-32 (58)
43 1j3t_A Intersectin 2; beta bar 59.9 7.3 0.00025 22.5 2.6 14 3-16 27-40 (74)
44 1k4u_S Phagocyte NADPH oxidase 59.6 9.6 0.00033 21.1 3.0 15 3-17 22-36 (62)
45 2yuo_A CIP85, RUN and TBC1 dom 58.9 7.9 0.00027 22.5 2.7 13 3-15 24-36 (78)
46 2gnc_A SLIT-ROBO RHO GTPase-ac 58.9 8.4 0.00029 21.3 2.7 14 3-16 23-36 (60)
47 2xmf_A Myosin 1E SH3; motor pr 58.4 8.7 0.0003 21.2 2.7 15 3-17 22-36 (60)
48 2dl3_A Sorbin and SH3 domain-c 58.3 10 0.00035 21.3 3.0 14 3-16 24-37 (68)
49 2j6f_A CD2-associated protein; 58.0 8.8 0.0003 21.4 2.7 14 3-16 18-31 (62)
50 1uhc_A KIAA1010 protein; beta 57.7 9.8 0.00033 22.2 3.0 14 3-16 30-43 (79)
51 3c0c_A Endophilin-A2; endocyto 57.7 8.7 0.0003 22.1 2.7 15 3-17 30-44 (73)
52 1zuy_A Myosin-5 isoform; SH3 d 57.4 13 0.00044 20.1 3.3 17 3-19 18-34 (58)
53 2oug_A Transcriptional activat 57.4 0.035 1.2E-06 37.5 -9.0 26 4-29 109-134 (162)
54 1x2k_A OSTF1, osteoclast stimu 57.1 10 0.00035 21.5 2.9 14 3-16 24-37 (68)
55 2dl8_A SLIT-ROBO RHO GTPase-ac 56.1 9.6 0.00033 21.9 2.7 14 3-16 26-39 (72)
56 1csk_A C-SRC SH3 domain; phosp 56.0 12 0.00039 21.3 3.0 13 3-15 28-40 (71)
57 1zx6_A YPR154WP; SH3 domain, p 55.9 10 0.00035 20.7 2.7 15 3-17 19-33 (58)
58 2jte_A CD2-associated protein; 55.3 10 0.00036 21.0 2.7 14 3-16 23-36 (64)
59 2ebp_A SAM and SH3 domain-cont 55.3 12 0.0004 21.8 3.0 14 3-16 28-41 (73)
60 1zuu_A BZZ1 protein; SH3 domai 55.1 13 0.00043 20.2 3.0 16 3-18 18-33 (58)
61 1oot_A Hypothetical 40.4 kDa p 54.5 11 0.00038 20.6 2.7 15 3-17 20-34 (60)
62 1uj0_A Signal transducing adap 54.4 11 0.00038 20.9 2.7 14 3-16 22-35 (62)
63 2ydl_A SH3 domain-containing k 54.3 11 0.00036 21.9 2.7 14 3-16 19-32 (69)
64 1zlm_A Osteoclast stimulating 54.3 11 0.00039 20.5 2.7 14 3-16 20-33 (58)
65 2k9g_A SH3 domain-containing k 54.2 11 0.00037 21.6 2.7 14 3-16 26-39 (73)
66 2iim_A Proto-oncogene tyrosine 54.2 14 0.00047 20.5 3.1 14 3-16 23-36 (62)
67 3eg3_A Proto-oncogene tyrosine 53.9 12 0.00039 20.6 2.7 13 3-15 22-34 (63)
68 2dl7_A KIAA0769 protein; SH3 d 53.8 11 0.00038 21.6 2.7 14 3-16 25-38 (73)
69 2ysq_A RHO guanine nucleotide 52.8 13 0.00045 21.8 3.0 14 3-16 27-40 (81)
70 2epd_A RHO GTPase-activating p 52.6 10 0.00034 22.1 2.4 14 3-16 27-40 (76)
71 2dmo_A Neutrophil cytosol fact 52.2 10 0.00035 21.5 2.4 14 3-16 24-37 (68)
72 1w1f_A Tyrosine-protein kinase 52.2 12 0.0004 20.8 2.6 15 3-17 24-38 (65)
73 1uhf_A Intersectin 2; beta bar 51.2 13 0.00044 21.2 2.7 13 3-15 25-37 (69)
74 2dl4_A Protein STAC; SH3 domai 51.1 15 0.00051 20.8 3.0 14 3-16 24-37 (68)
75 2a28_A BZZ1 protein; SH3 domai 50.7 22 0.00074 19.1 3.5 15 3-17 17-31 (54)
76 2dbk_A CRK-like protein; struc 50.4 15 0.00051 22.0 3.0 15 3-17 35-49 (88)
77 3u5c_E RP5, S7, YS6, 40S ribos 50.1 8.3 0.00028 29.5 2.2 59 3-72 173-236 (261)
78 1x69_A Cortactin isoform A; SH 49.6 13 0.00046 21.6 2.6 14 3-16 34-47 (79)
79 3udc_A Small-conductance mecha 49.5 12 0.00041 27.2 2.9 28 4-36 128-155 (285)
80 1k1z_A VAV; SH3, proto-oncogen 49.4 21 0.0007 20.7 3.4 15 3-17 35-49 (78)
81 2fei_A CD2-associated protein; 49.4 9.7 0.00033 21.9 2.0 14 3-16 18-31 (65)
82 2da9_A SH3-domain kinase bindi 49.0 13 0.00044 21.1 2.5 14 3-16 24-37 (70)
83 1gcq_C VAV proto-oncogene; SH3 48.8 22 0.00075 20.0 3.4 14 3-16 27-40 (70)
84 2dil_A Proline-serine-threonin 48.6 15 0.00052 20.7 2.7 14 3-16 25-38 (69)
85 2jz2_A SSL0352 protein; SH3-li 48.2 34 0.0012 21.5 4.4 41 4-50 1-43 (66)
86 2dlp_A KIAA1783 protein; SH3 d 48.2 14 0.00048 21.9 2.6 13 3-15 25-37 (85)
87 1ruw_A Myosin-3 isoform, MYO3; 48.0 21 0.00071 20.1 3.3 17 3-19 20-36 (69)
88 3j20_E 30S ribosomal protein S 47.9 23 0.0008 26.6 4.3 52 3-65 177-234 (243)
89 2x3w_D Syndapin I, protein kin 47.4 19 0.00064 19.6 2.9 14 3-16 20-33 (60)
90 2dbm_A SH3-containing GRB2-lik 47.1 10 0.00035 21.8 1.8 15 3-17 24-38 (73)
91 2ega_A SH3 and PX domain-conta 46.8 12 0.00041 21.2 2.1 15 3-17 25-39 (70)
92 2enm_A Sorting nexin-9; SH3-li 46.6 22 0.00076 20.4 3.3 14 3-16 27-40 (77)
93 1ujy_A RHO guanine nucleotide 46.5 10 0.00035 22.0 1.7 14 3-16 27-40 (76)
94 2vkn_A Protein SSU81; membrane 45.9 22 0.00076 20.1 3.2 13 3-15 24-36 (70)
95 2ed0_A ABL interactor 2; coile 45.7 17 0.00059 21.1 2.7 15 3-17 34-48 (78)
96 1ugv_A KIAA0621, olygophrenin- 45.7 8.5 0.00029 22.2 1.3 13 3-15 27-39 (72)
97 1wxt_A Hypothetical protein FL 45.4 21 0.00073 20.1 3.0 13 3-15 24-36 (68)
98 2oi3_A Tyrosine-protein kinase 44.8 16 0.00056 21.4 2.5 14 3-16 42-55 (86)
99 1i07_A Epidermal growth factor 42.9 20 0.0007 19.6 2.6 13 3-15 18-30 (60)
100 2l0a_A STAM-1, signal transduc 42.6 18 0.00061 21.3 2.4 14 3-16 34-47 (72)
101 1b07_A Protein (proto-oncogene 41.8 30 0.001 19.5 3.3 15 3-17 20-34 (65)
102 3dcl_A TM1086; SAD, structural 41.4 16 0.00056 28.4 2.6 22 7-28 86-107 (284)
103 2ekh_A SH3 and PX domain-conta 41.4 22 0.00075 20.8 2.7 15 3-17 25-39 (80)
104 1dj7_B Ferredoxin thioredoxin 41.1 25 0.00087 22.4 3.1 25 6-30 2-40 (75)
105 3izc_G 60S ribosomal protein R 40.7 39 0.0013 24.5 4.4 25 5-29 34-58 (176)
106 1u5s_A Cytoplasmic protein NCK 40.2 25 0.00085 19.8 2.7 14 3-16 23-36 (71)
107 4e8b_A Ribosomal RNA small sub 39.8 35 0.0012 24.6 4.1 28 2-29 31-58 (251)
108 2v1r_A Peroxisomal membrane pr 39.8 29 0.001 19.9 3.1 15 3-17 32-46 (80)
109 1vhk_A Hypothetical protein YQ 39.5 43 0.0015 24.5 4.6 28 2-29 34-61 (268)
110 1vhy_A Hypothetical protein HI 39.5 35 0.0012 24.8 4.1 35 2-44 33-69 (257)
111 2d8h_A SH3YL1 protein; SH3 dom 39.4 31 0.001 20.0 3.1 15 3-17 34-48 (80)
112 1tg0_A BBC1 protein, myosin ta 39.3 20 0.00069 20.2 2.2 14 3-16 24-37 (68)
113 2lcs_A NAP1-binding protein 2; 38.7 31 0.001 20.0 3.0 16 3-18 22-37 (73)
114 1z85_A Hypothetical protein TM 38.2 36 0.0012 24.6 3.9 36 3-44 39-74 (234)
115 1at0_A 17-hedgehog; developmen 38.1 72 0.0025 21.0 5.1 27 3-29 90-117 (145)
116 3kw2_A Probable R-RNA methyltr 37.9 40 0.0014 24.6 4.1 26 2-29 30-57 (257)
117 2b86_A Cytoplasmic protein NCK 37.9 24 0.00082 20.4 2.5 14 3-16 21-34 (67)
118 3rnj_A Brain-specific angiogen 37.4 32 0.0011 19.1 2.9 14 3-16 25-38 (67)
119 1wi7_A SH3-domain kinase bindi 37.2 16 0.00054 20.6 1.5 13 3-15 24-36 (68)
120 1x6b_A RHO guanine exchange fa 36.1 21 0.00072 20.8 2.0 14 3-16 34-47 (79)
121 2vv5_A MSCS, small-conductance 36.0 17 0.00058 26.5 1.9 29 3-36 128-156 (286)
122 2cuc_A SH3 domain containing r 36.0 38 0.0013 18.9 3.1 14 3-16 24-37 (70)
123 2rf0_A Mitogen-activated prote 36.0 35 0.0012 20.8 3.1 14 3-16 46-59 (89)
124 2bz8_A SH3-domain kinase bindi 35.7 31 0.001 18.7 2.6 16 3-18 18-33 (58)
125 1uff_A Intersectin 2; beta bar 35.7 24 0.00082 21.3 2.3 14 3-16 22-35 (93)
126 1jqq_A PEX13P, peroxisomal mem 35.6 36 0.0012 20.2 3.1 15 3-17 32-46 (92)
127 2yup_A Vinexin; sorbin and SH3 35.5 27 0.00093 20.8 2.5 14 3-16 34-47 (90)
128 1wx6_A Cytoplasmic protein NCK 35.5 40 0.0014 19.9 3.3 14 3-16 34-47 (91)
129 3i5r_A Phosphatidylinositol 3- 35.4 44 0.0015 19.5 3.4 13 3-15 22-34 (83)
130 2ed1_A 130 kDa phosphatidylino 35.3 22 0.00074 20.5 2.0 13 3-15 27-39 (76)
131 1nm7_A Peroxisomal membrane pr 34.7 37 0.0013 19.9 3.0 15 3-17 25-39 (69)
132 3iz5_G 60S ribosomal protein L 34.4 43 0.0015 25.0 3.9 35 5-46 75-109 (219)
133 2kxc_A Brain-specific angiogen 34.4 24 0.00083 19.7 2.0 14 3-16 24-37 (67)
134 1udl_A Intersectin 2, KIAA1256 34.1 27 0.00094 21.1 2.4 14 3-16 51-64 (98)
135 2lj0_A Sorbin and SH3 domain-c 33.9 31 0.0011 20.0 2.5 18 3-20 23-40 (65)
136 1jo8_A ABP1P, actin binding pr 33.1 34 0.0012 18.5 2.5 15 3-17 17-31 (58)
137 1cka_A C-CRK N-terminal SH3 do 33.1 35 0.0012 18.3 2.5 15 3-17 18-32 (57)
138 2rqr_A CED-12 homolog, engulfm 33.0 31 0.001 22.1 2.6 14 3-16 76-89 (119)
139 1gbq_A GRB2; complex (signal t 32.9 34 0.0012 19.6 2.6 15 3-17 26-40 (74)
140 2v1q_A SLA1, cytoskeleton asse 32.3 28 0.00097 18.8 2.0 14 3-16 19-32 (60)
141 2drm_A Acanthamoeba myosin IB; 32.1 38 0.0013 18.2 2.5 15 3-17 20-34 (58)
142 1y0m_A 1-phosphatidylinositol- 30.7 39 0.0013 18.4 2.5 15 3-17 20-34 (61)
143 2o2o_A SH3-domain kinase-bindi 30.6 17 0.00059 22.4 1.0 14 3-16 35-48 (92)
144 2oaw_A Spectrin alpha chain, b 30.0 41 0.0014 18.3 2.5 16 3-18 18-33 (65)
145 2dl5_A KIAA0769 protein; SH3 d 29.3 48 0.0016 19.2 2.8 15 3-17 30-44 (78)
146 2j05_A RAS GTPase-activating p 29.3 43 0.0015 18.5 2.5 15 3-17 23-37 (65)
147 1gl5_A Tyrosine-protein kinase 29.2 43 0.0015 18.7 2.5 15 3-17 19-33 (67)
148 2fpe_A C-JUN-amino-terminal ki 29.1 44 0.0015 18.3 2.5 15 3-17 20-34 (62)
149 4glm_A Dynamin-binding protein 29.1 43 0.0015 18.6 2.5 18 3-20 30-47 (72)
150 2egv_A UPF0088 protein AQ_165; 28.8 49 0.0017 23.5 3.3 24 3-29 27-52 (229)
151 2b25_A Hypothetical protein; s 28.6 27 0.00093 24.9 1.9 16 2-17 7-22 (336)
152 1yn8_A NBP2, NAP1-binding prot 28.6 32 0.0011 18.5 1.8 14 3-16 18-31 (59)
153 4e6r_A Cytoplasmic protein NCK 27.9 49 0.0017 17.6 2.5 17 3-19 18-34 (58)
154 2fpf_A C-JUN-amino-terminal ki 27.9 46 0.0016 18.7 2.5 15 3-17 23-37 (71)
155 3o5z_A Phosphatidylinositol 3- 27.1 1E+02 0.0035 18.4 4.1 13 3-15 28-40 (90)
156 4esr_A Jouberin; AHI-1, AHI1, 27.0 48 0.0016 18.4 2.5 16 3-18 23-38 (69)
157 1ue9_A Intersectin 2; beta bar 27.0 45 0.0015 19.2 2.4 17 3-19 24-40 (80)
158 3ulr_B SRC substrate cortactin 26.7 51 0.0017 18.0 2.5 15 3-17 26-40 (65)
159 2kbt_A Chimera of proto-oncoge 26.6 46 0.0016 22.0 2.6 14 3-16 22-35 (142)
160 2jt4_A Cytoskeleton assembly c 26.4 52 0.0018 18.3 2.5 14 3-16 23-36 (71)
161 2jxb_A T-cell surface glycopro 26.1 48 0.0016 19.6 2.5 13 3-15 48-60 (86)
162 2pqh_A Spectrin alpha chain, b 26.1 50 0.0017 19.2 2.5 15 3-17 19-33 (80)
163 1v6z_A Hypothetical protein TT 25.9 86 0.0029 22.2 4.1 27 2-29 26-52 (228)
164 1wxb_A Epidermal growth factor 25.6 42 0.0015 18.8 2.0 14 3-16 24-37 (68)
165 4f14_A Nebulette; SH3 domain, 25.5 55 0.0019 17.6 2.5 16 3-18 23-38 (64)
166 1wyx_A CRK-associated substrat 25.5 43 0.0015 18.7 2.0 15 3-17 20-34 (69)
167 3h0h_A Proto-oncogene tyrosine 25.4 54 0.0018 18.3 2.5 15 3-17 32-46 (73)
168 1x2p_A Protein arginine N-meth 25.4 53 0.0018 18.3 2.4 15 3-17 24-38 (68)
169 2e5k_A Suppressor of T-cell re 25.2 61 0.0021 19.3 2.8 14 3-16 33-46 (94)
170 2ct4_A CDC42-interacting prote 25.1 44 0.0015 18.7 2.0 14 3-16 24-37 (70)
171 3cqt_A P59-FYN, proto-oncogene 25.0 54 0.0018 19.2 2.5 15 3-17 22-36 (79)
172 3ngp_A Spectrin alpha chain, b 24.8 58 0.002 17.5 2.5 16 3-18 23-38 (62)
173 2djq_A SH3 domain containing r 24.8 56 0.0019 18.1 2.5 15 3-17 24-38 (68)
174 1z9q_A Neutrophil cytosol fact 24.7 18 0.00061 21.8 0.3 14 3-16 35-48 (79)
175 2lcc_A AT-rich interactive dom 24.7 1.2E+02 0.0042 18.4 4.2 56 3-62 4-62 (76)
176 2ct3_A Vinexin; SH3 domian, st 24.7 43 0.0015 18.6 1.9 16 3-18 24-39 (70)
177 2kxd_A 11-MER peptide, SH3 dom 24.4 57 0.002 18.5 2.5 15 3-17 16-30 (73)
178 1d7q_A Translation initiation 24.2 86 0.0029 21.7 3.8 28 2-29 67-94 (143)
179 2k2m_A EPS8-like protein 1; al 24.2 47 0.0016 18.7 2.0 14 3-16 25-38 (68)
180 2csi_A RIM-BP2, RIM binding pr 23.7 43 0.0015 19.3 1.8 14 3-16 31-44 (76)
181 2wnv_C C1Q chain C, complement 23.7 29 0.001 22.4 1.2 14 3-16 95-108 (131)
182 2dgy_A MGC11102 protein; EIF-1 23.2 84 0.0029 20.7 3.4 28 2-29 51-79 (111)
183 1gri_A Growth factor bound pro 23.2 66 0.0023 21.5 3.0 14 3-16 175-188 (217)
184 2wnv_A C1Q chain A, complement 23.0 31 0.001 22.3 1.2 14 3-16 96-109 (134)
185 2d8j_A FYN-related kinase; SH3 22.8 51 0.0018 18.6 2.0 16 3-18 24-39 (77)
186 1tuc_A Alpha-spectrin; capping 22.8 66 0.0022 17.8 2.5 15 3-17 6-20 (63)
187 1jt8_A EIF-1A, probable transl 22.6 68 0.0023 20.9 2.8 27 3-29 57-84 (102)
188 2wnv_B C1Q chain B, complement 22.3 32 0.0011 22.4 1.2 14 3-16 97-110 (136)
189 2jw4_A Cytoplasmic protein NCK 22.1 52 0.0018 18.7 2.0 14 3-16 24-37 (72)
190 2oqk_A Putative translation in 21.6 95 0.0032 20.3 3.4 27 3-29 69-95 (117)
191 2ke9_A Caskin-2; SH3 domain, A 21.5 54 0.0018 19.6 2.0 17 3-19 36-52 (83)
192 3u23_A CD2-associated protein; 21.3 53 0.0018 17.8 1.8 14 3-16 24-37 (65)
193 3qyh_B CO-type nitrIle hydrata 21.1 81 0.0028 23.1 3.3 58 4-73 130-197 (219)
194 3qwz_A Transitional endoplasmi 21.1 1.5E+02 0.0051 21.2 4.6 48 3-58 147-194 (211)
195 1x6g_A Megakaryocyte-associate 21.1 57 0.0019 19.1 2.0 14 3-16 34-47 (81)
196 2o9s_A Ponsin; SH3 domain, sig 21.1 74 0.0025 17.6 2.5 14 3-16 23-36 (67)
197 1spk_A RSGI RUH-010, riken cDN 21.0 48 0.0016 18.6 1.7 14 3-16 25-38 (72)
198 1aww_A ATK, AMGX1, BPK, bruton 21.0 44 0.0015 18.5 1.5 14 3-16 25-38 (67)
199 2dnu_A RUH-061, SH3 multiple d 20.6 63 0.0021 18.0 2.1 15 3-17 25-39 (71)
200 2cud_A SRC-like-adapter; SH3 d 20.4 58 0.002 18.9 2.0 13 3-15 34-46 (79)
201 2cre_A HEF-like protein; SH3 d 20.3 63 0.0021 18.0 2.0 15 3-17 24-38 (71)
202 1vq8_Q 50S ribosomal protein L 20.3 1.5E+02 0.0052 19.3 4.1 34 5-44 34-77 (96)
203 2zzd_A Thiocyanate hydrolase s 20.3 95 0.0032 21.3 3.3 59 4-74 36-104 (126)
204 1jb0_E Photosystem 1 reaction 20.2 1.4E+02 0.0047 19.1 3.8 49 5-55 1-52 (75)
No 1
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=99.87 E-value=1.6e-22 Score=142.18 Aligned_cols=65 Identities=23% Similarity=0.442 Sum_probs=61.8
Q ss_pred CcccccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEeceecccCCCc----ccCCCccEEEeeccCCc
Q 041704 1 MSMSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYEPIFDPRIPLE----PVGHSSVMSSVGRMSPE 71 (86)
Q Consensus 1 ~Sm~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VEgVn~~K~~g~----pV~~snvmi~~~~~~~~ 71 (86)
|+|+||+||+|+|++|+|||++|+|++|+ +++++|+|||||++|.+|. |+++|||||+.+.++++
T Consensus 46 rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~------~kk~~V~VEgVn~~K~~G~~~e~pIh~SNV~i~~~~~dk~ 114 (127)
T 3u5e_Y 46 KALPIRRDDEVLVVRGSKKGQEGKISSVY------RLKFAVQVDKVTKEKVNGASVPINLHPSKLVITKLHLDKD 114 (127)
T ss_dssp CEEECCTTCEEEECSSTTTTCEEEEEEEE------GGGTEEEEETCEEECSSSCEEECCBCGGGEEEEECCCCHH
T ss_pred CcccccCCCEEEEeecCCCCccceEEEEE------CCCCEEEEeCeEEECCCCcEEEcccchHHEEEEccccCcH
Confidence 58999999999999999999999999999 9999999999999999998 89999999999999753
No 2
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=99.85 E-value=5.3e-22 Score=140.85 Aligned_cols=64 Identities=31% Similarity=0.549 Sum_probs=61.0
Q ss_pred CcccccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEeceecccCCCc----ccCCCccEEEeeccCC
Q 041704 1 MSMSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYEPIFDPRIPLE----PVGHSSVMSSVGRMSP 70 (86)
Q Consensus 1 ~Sm~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VEgVn~~K~~g~----pV~~snvmi~~~~~~~ 70 (86)
|+|+||+||+|+|++|+|||++|+|++|+ +++++|+|||||++|++|. |+++|||||+.+.+++
T Consensus 45 Rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~------~kk~~V~VEgVn~~K~~G~~~e~pIh~SNV~i~~~k~dk 112 (135)
T 4a17_S 45 RSMPVRKDDEVLIVRGKFKGNKGKVTQVY------RKKWAIHVEKISKNKLNGAPYQIPLSASQLVLTKLKLDK 112 (135)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEE------TTTTEEEETTCCEEETTTEEECCCBCGGGEEEEECCCCH
T ss_pred CcccccCCCEEEEeecCCCCceeeEEEEE------cCCCEEEEeCeEEEcCCCCEEEcccchHHEEEEcccCCc
Confidence 58999999999999999999999999999 9999999999999999997 8899999999998864
No 3
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=99.84 E-value=1.4e-21 Score=140.78 Aligned_cols=64 Identities=41% Similarity=0.623 Sum_probs=61.1
Q ss_pred CcccccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEeceecccCCCc----ccCCCccEEEeeccCC
Q 041704 1 MSMSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYEPIFDPRIPLE----PVGHSSVMSSVGRMSP 70 (86)
Q Consensus 1 ~Sm~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VEgVn~~K~~g~----pV~~snvmi~~~~~~~ 70 (86)
|+|+||+||+|+||+|+|||++|+|++|+ +++++|+|||||++|+||. |++.|||||+.+.+++
T Consensus 45 Rs~~IkKGD~V~Vi~GkdKGk~GkVl~V~------~kk~~V~VEGVN~~K~~G~~~eapIh~SNV~i~~~k~dk 112 (150)
T 3iz5_Y 45 RSIPIRKDDEVQVVRGSYKGREGKVVQVY------RRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDK 112 (150)
T ss_dssp SEEECCSSSEEEECSSTTTTCEEEEEEEE------TTTTEEEETTCEEECTTSCEEECCBCGGGEEEEECCCCS
T ss_pred cccccCCCCEEEEeecCCCCccceEEEEE------cCCCEEEEeCcEEEeCCCCEEecccchHHEEEEcccCCh
Confidence 57999999999999999999999999999 9999999999999999998 8899999999998864
No 4
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.83 E-value=5.2e-21 Score=133.10 Aligned_cols=65 Identities=28% Similarity=0.360 Sum_probs=61.4
Q ss_pred CcccccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEeceecccCCCc----ccCCCccEEEeeccCCc
Q 041704 1 MSMSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYEPIFDPRIPLE----PVGHSSVMSSVGRMSPE 71 (86)
Q Consensus 1 ~Sm~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VEgVn~~K~~g~----pV~~snvmi~~~~~~~~ 71 (86)
++|+|++||+|+|++|+|||++|+|++|+ +++++|+|||||+.++||. |++.|||||+...+.|.
T Consensus 42 r~~~IkkGD~V~Vi~GkdKGk~GkV~~V~------~k~~~V~VEgvn~~k~~G~~~e~pIh~SNV~l~~~~~~d~ 110 (121)
T 3j21_U 42 RNLPVRVGDKVRIMRGDYKGHEGKVVEVD------LKRYRIYVEGATLRKTNGTEVFYPIHPSNVMIIELNLEDE 110 (121)
T ss_dssp SEEECCSSSEEEECSSSCSSEEEEEEEEE------TTTTEEEETTCEEECSSSCEEECCBCGGGEEEEECCCCCH
T ss_pred cccccccCCEEEEeecCCCCcEeEEEEEE------ecCCEEEEeCeEEEecCCcEEEcccCHHHeEEEcCccCCc
Confidence 47899999999999999999999999999 9999999999999999987 88999999999988664
No 5
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=99.79 E-value=8.8e-20 Score=126.88 Aligned_cols=65 Identities=23% Similarity=0.334 Sum_probs=59.5
Q ss_pred CcccccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEeceecccCCCc----ccCCCccEEEeeccCCc
Q 041704 1 MSMSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYEPIFDPRIPLE----PVGHSSVMSSVGRMSPE 71 (86)
Q Consensus 1 ~Sm~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VEgVn~~K~~g~----pV~~snvmi~~~~~~~~ 71 (86)
++|+|++||+|+|++|+|||++|+|++|+ +++++|+|||||+.|.+|. |++.|||||+.+.+++.
T Consensus 39 r~~~IkkGD~V~Vi~G~dKGk~GkV~~V~------~k~~~V~VEgvn~kK~~Gg~~e~pIh~SNV~i~~~~~~k~ 107 (120)
T 1vq8_T 39 RNVRVNAGDTVEVLRGDFAGEEGEVINVD------LDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLEDE 107 (120)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEE------TTTTEEEETTCEEECSSSCEEECCBCGGGEEEEECCCCCH
T ss_pred ccccccCCCEEEEEecCCCCCEEEEEEEE------CCCCEEEEeCeEeEcCCCCEEEeeechHHEEEEeccCCCc
Confidence 57899999999999999999999999999 9999999999999766665 89999999999888653
No 6
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=99.76 E-value=5e-19 Score=121.72 Aligned_cols=64 Identities=23% Similarity=0.234 Sum_probs=57.5
Q ss_pred CcccccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEeceecccCCCc---------------ccCCCccEEEe
Q 041704 1 MSMSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYEPIFDPRIPLE---------------PVGHSSVMSSV 65 (86)
Q Consensus 1 ~Sm~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VEgVn~~K~~g~---------------pV~~snvmi~~ 65 (86)
++|+|++||+|+|++|+|||++|+|++|+ +++++|+|||+|+.++|.+ |++.||||+.+
T Consensus 12 rkm~IkkGD~V~Vi~GkdKGk~GkV~~V~------~~~~~V~VEGvN~~kkh~kp~~~~~~Ggiv~~e~PIh~SNV~lv~ 85 (115)
T 2zjr_R 12 DKLHFKKGDTVIVLSGKHKGQTGKVLLAL------PRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVD 85 (115)
T ss_dssp SCCSSCTTSEEECCSSSSTTCEEEEEEEE------TTTTEEEESSSCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEECBS
T ss_pred eeCcccCCCEEEEeEcCCCCcEEEEEEEE------CCCCEEEEeCcEeEEEecCCCcCCCCCCEEEEEcccCHHHEEEEe
Confidence 47899999999999999999999999999 9999999999999987632 88899999997
Q ss_pred eccCC
Q 041704 66 GRMSP 70 (86)
Q Consensus 66 ~~~~~ 70 (86)
..+..
T Consensus 86 p~~~k 90 (115)
T 2zjr_R 86 PETGK 90 (115)
T ss_dssp SSSBC
T ss_pred ccCCC
Confidence 65543
No 7
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=99.76 E-value=9.6e-19 Score=119.93 Aligned_cols=63 Identities=29% Similarity=0.399 Sum_probs=56.4
Q ss_pred cccccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEeceecccCCCc---------------ccCCCccEEEee
Q 041704 2 SMSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYEPIFDPRIPLE---------------PVGHSSVMSSVG 66 (86)
Q Consensus 2 Sm~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VEgVn~~K~~g~---------------pV~~snvmi~~~ 66 (86)
.|+|++||+|+|++|+|||++|+|++|+ +++++|+|||||+.++|.+ |++.||||+...
T Consensus 4 k~~IkkGD~V~Vi~GkdKGk~GkV~~V~------~~~~~ViVEGvN~~kkh~kp~~~~~~Ggi~~~E~PIh~SNV~lv~p 77 (110)
T 3v2d_Y 4 KMHVKKGDTVLVASGKYKGRVGKVKEVL------PKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICP 77 (110)
T ss_dssp CCSCCTTSEEEECSSTTTTCEEEEEEEE------GGGTEEEETTSSEEEEECCSSSSSTTCCEEEEECCEEGGGEEEBCT
T ss_pred ccccCCCCEEEEeEcCCCCeEeEEEEEE------CCCCEEEEeCEEEEEEEeCCCccCCCCCEEEEECCcCHHHeEEEcC
Confidence 5899999999999999999999999999 9999999999999986532 888999999976
Q ss_pred ccCC
Q 041704 67 RMSP 70 (86)
Q Consensus 67 ~~~~ 70 (86)
....
T Consensus 78 ~~~k 81 (110)
T 3v2d_Y 78 ACGK 81 (110)
T ss_dssp TTCS
T ss_pred cCCC
Confidence 5443
No 8
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.75 E-value=1.1e-18 Score=124.64 Aligned_cols=65 Identities=35% Similarity=0.559 Sum_probs=58.4
Q ss_pred CcccccCCCEEEEeeccCCCee-eeEEEEEeccccCcccceEEEeceecccCCCc----ccCCCccEEEeeccCCc
Q 041704 1 MSMSVRKDDEVQVVGGTYKGRE-GKFVQIFAIFSGVKRDLVVSYEPIFDPRIPLE----PVGHSSVMSSVGRMSPE 71 (86)
Q Consensus 1 ~Sm~IrKgDeV~VI~Gk~KGk~-GKV~~V~~~~~~~rkk~~V~VEgVn~~K~~g~----pV~~snvmi~~~~~~~~ 71 (86)
|+|+|++||+|+||+|+|||++ |+|++|+ +++++|+|||||+.|.+|. |++.|||||++..+++.
T Consensus 45 r~~~IkkGD~V~Vi~GkdKGk~~GkV~~V~------~k~~~V~VEgvn~~Kp~G~~~e~PIh~SNV~lv~~~~~k~ 114 (145)
T 2zkr_t 45 RSMPIRKDDEVQVVRGHYKGQQIGKVVQVY------RKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKD 114 (145)
T ss_dssp -CCBCCTTCEEEECSSTTTTCCSEEEEEEE------TTTTEEEETTCEEECSSCCEEECCBCGGGEEECC-CCCHH
T ss_pred cccccCCCCEEEEeecCCCCcceeEEEEEE------CCCCEEEEeeeEeEcCCCceEEeccCHHHEEEEcCcCCch
Confidence 5799999999999999999999 9999999 9999999999999888775 89999999998876543
No 9
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=99.73 E-value=2.3e-18 Score=116.62 Aligned_cols=59 Identities=27% Similarity=0.276 Sum_probs=53.9
Q ss_pred ccccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEeceecccCCCc----------------ccCCCccEEEee
Q 041704 3 MSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYEPIFDPRIPLE----------------PVGHSSVMSSVG 66 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VEgVn~~K~~g~----------------pV~~snvmi~~~ 66 (86)
++|++||+|+|++|+|||++|+|++|+ ++ ++|+|||+|+.++|++ |++.||||+...
T Consensus 2 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~------~~-~~ViVeGvN~~kkh~kp~~~~~~~Ggi~~~E~PIh~SNV~lv~p 74 (102)
T 3r8s_U 2 AKIRRDDEVIVLTGKDKGKRGKVKNVL------SS-GKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNA 74 (102)
T ss_dssp CSSCSSCEEEECSSSSTTCEEEEEEEE------TT-TEEEETTCSEEEEEECCCSSSSCSCEEEEEECCEEGGGEEEEET
T ss_pred CCccCCCEEEEeEcCCCCeeeEEEEEE------eC-CEEEEeCeEEEEeccccCcccCCCCCEEEEECCcCHHHEEEEcC
Confidence 489999999999999999999999999 99 9999999999999985 666799999976
Q ss_pred cc
Q 041704 67 RM 68 (86)
Q Consensus 67 ~~ 68 (86)
..
T Consensus 75 ~~ 76 (102)
T 3r8s_U 75 AT 76 (102)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 10
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.66 E-value=1e-17 Score=124.49 Aligned_cols=60 Identities=23% Similarity=0.297 Sum_probs=53.8
Q ss_pred ccccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEeceecccCCCc---------------ccCCCccEEEeec
Q 041704 3 MSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYEPIFDPRIPLE---------------PVGHSSVMSSVGR 67 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VEgVn~~K~~g~---------------pV~~snvmi~~~~ 67 (86)
|+|++||+|+|++|+|||++|+|++|+ +++++|+|||||+.++|.+ |++.||||+.+..
T Consensus 67 mkIkKGD~V~VIaGkDKGK~GkVl~V~------~k~~rViVEGVN~vkKH~Kp~~~~~~GgIv~kEaPIhiSNV~Lvdp~ 140 (191)
T 3bbo_W 67 RHVKVGDTVKVISGGEKGKIGEISKIH------KHNSTVIIKDLNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLILKE 140 (191)
T ss_dssp CCSCCSSCEEECSSSSTTCCCSCCCCC------SSSCCCCCSSCCCCCCBCCSCCSSSCCBSSCCCCCCCGGGEEECSSS
T ss_pred CeeecCCEEEEeecCCCCceEEEEEEE------CCCCEEEEeCCEEEEEecCCcccCCCCCEEEEecCcCHHHeEEEecc
Confidence 349999999999999999999999999 9999999999999997533 7889999999754
Q ss_pred c
Q 041704 68 M 68 (86)
Q Consensus 68 ~ 68 (86)
.
T Consensus 141 ~ 141 (191)
T 3bbo_W 141 Q 141 (191)
T ss_dssp S
T ss_pred C
Confidence 3
No 11
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=99.64 E-value=3.3e-16 Score=104.96 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=50.7
Q ss_pred CCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEeceecccCCCc--------------ccCCCccEEEeeccCC
Q 041704 8 DDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYEPIFDPRIPLE--------------PVGHSSVMSSVGRMSP 70 (86)
Q Consensus 8 gDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VEgVn~~K~~g~--------------pV~~snvmi~~~~~~~ 70 (86)
||+|+|++|+|||++|+|++|+ +++++|+|||+|+.++|.+ |++.||||+.+.....
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~------~~~~~ViVeGvN~~kkh~kp~~~~~Ggiv~~e~pIh~SNV~lv~p~~~k 71 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVI------RQRNWVVVGGLNTHYRYIGKTMDYRGTMIPSEAPLLHRQVKLVDPMDRK 71 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEE------CCCCEEEEeCCEEEEEEcCCCCCCCCCEEEEecCcCHHHEEEEeCcCCC
Confidence 8999999999999999999999 9999999999999986432 7889999999765543
No 12
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=98.08 E-value=5.3e-06 Score=49.14 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=32.6
Q ss_pred ccccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEe
Q 041704 3 MSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYE 44 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VE 44 (86)
+++++||.|.|+.|.++|.+|+|.+++ +.+.++.|+
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~------~~k~~v~V~ 38 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEIN------PERGKVKVM 38 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEE------TTTTEEEEE
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEEc------CCCCEEEEE
Confidence 578899999999999999999999999 887777765
No 13
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=97.41 E-value=0.00032 Score=47.76 Aligned_cols=57 Identities=21% Similarity=0.138 Sum_probs=41.6
Q ss_pred ccccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEeceecccCCCcccCCCccEEEe
Q 041704 3 MSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYEPIFDPRIPLEPVGHSSVMSSV 65 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VEgVn~~K~~g~pV~~snvmi~~ 65 (86)
..++.||.|.|+.|.++|.+|.|.+++ ..+.++.|+=.-.-+.---+++.++|....
T Consensus 90 ~~~~~Gd~VrI~~Gpf~g~~g~V~~vd------~~k~~v~V~v~~~gr~tpvel~~~~v~~i~ 146 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGPFKGQKAKVVKID------ESKDEVVVQFIDAIVPIPVTIKGDYVRLIS 146 (152)
T ss_dssp TTCCTTCEEEECSSTTTTCEEEEEEEE------TTTTEEEEEESSCSSCCEEEEEGGGEEEEE
T ss_pred ccCCCCCEEEEeeecCCCCEEEEEEEe------CCCCEEEEEEEecceeEEEEECHHHEEEec
Confidence 457899999999999999999999999 888887777433322212244466666544
No 14
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=96.95 E-value=0.0013 Score=45.10 Aligned_cols=35 Identities=20% Similarity=0.459 Sum_probs=31.1
Q ss_pred ccccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEe
Q 041704 3 MSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYE 44 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VE 44 (86)
.| ++|+.|.|+.|+|+|+.|+++.++ ..++.+.|+
T Consensus 70 iP-~~g~~V~Iv~G~~rG~~g~L~~id------~~~~~~~V~ 104 (127)
T 2ckk_A 70 IP-APGKRILVLNGGYRGNEGTLESIN------EKTFSATIV 104 (127)
T ss_dssp CC-CTTCEEEECSSTTTTCEEEEEEEE------GGGTEEEEE
T ss_pred cC-CCCCEEEEEecccCCcEEEEEEEe------CCCcEEEEE
Confidence 35 789999999999999999999999 887777765
No 15
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.95 E-value=0.00055 Score=41.24 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=30.7
Q ss_pred ccccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEe
Q 041704 3 MSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYE 44 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VE 44 (86)
..+..||.|.|+.|.++|-+|+|..++ ..+.+|.++
T Consensus 6 ~~f~~GD~V~V~~Gpf~g~~G~V~evd------~e~v~V~v~ 41 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGELINLQGKILSVD------GNKITIMPK 41 (59)
T ss_dssp SSCCTTSEEEECSSTTTTCEEEECCCB------TTEEEEEEC
T ss_pred ccCCCCCEEEEeecCCCCCEEEEEEEe------CCEEEEEEE
Confidence 467899999999999999999999999 655566665
No 16
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=96.83 E-value=0.0012 Score=42.03 Aligned_cols=26 Identities=27% Similarity=0.579 Sum_probs=24.4
Q ss_pred cccCCCEEEEeeccCCCeeeeEEEEE
Q 041704 4 SVRKDDEVQVVGGTYKGREGKFVQIF 29 (86)
Q Consensus 4 ~IrKgDeV~VI~Gk~KGk~GKV~~V~ 29 (86)
..+.||-|+|++|+|+|.+|-|+++.
T Consensus 17 ~F~~GDHVkVi~G~~~getGlVV~v~ 42 (69)
T 2do3_A 17 YFKMGDHVKVIAGRFEGDTGLIVRVE 42 (69)
T ss_dssp SCCTTCEEEESSSTTTTCEEEEEEEC
T ss_pred eccCCCeEEEeccEEcCceEEEEEEe
Confidence 56789999999999999999999997
No 17
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=96.61 E-value=0.0028 Score=43.97 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=29.6
Q ss_pred cccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEE
Q 041704 4 SVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSY 43 (86)
Q Consensus 4 ~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~V 43 (86)
.+..||.|.|+.|.++|.+|.|.+++ ..+.++.|
T Consensus 127 ~~~~Gd~V~V~~GPf~g~~G~v~~v~------~~k~r~~V 160 (181)
T 2jvv_A 127 LFEPGEMVRVNDGPFADFNGVVEEVD------YEKSRLKV 160 (181)
T ss_dssp CCCTTEEEEECSSTTTTEEEEEEEEE------TTTTEEEE
T ss_pred cCCCCCEEEEeccCCCCcEEEEEEEe------CCCCEEEE
Confidence 56799999999999999999999999 77666544
No 18
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=94.71 E-value=0.043 Score=42.89 Aligned_cols=35 Identities=14% Similarity=0.276 Sum_probs=30.0
Q ss_pred cccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEe
Q 041704 4 SVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYE 44 (86)
Q Consensus 4 ~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VE 44 (86)
.+..||.|.|+.|.++|.+|.|.+++ ..+.++.|.
T Consensus 298 ~f~~Gd~VrV~~GPF~G~~G~V~evd------~ek~rv~V~ 332 (352)
T 2xhc_A 298 GFKVGDMVKIISGPFEDFAGVIKEID------PERQELKVN 332 (352)
T ss_dssp CCCTTCEEEECSSTTTTCEEEEEEEE------TTTTEEEEE
T ss_pred cCCCCCEEEEeccCCCCcEEEEEEEc------CCCCEEEEE
Confidence 46789999999999999999999999 776665553
No 19
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=92.92 E-value=0.018 Score=43.01 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=0.0
Q ss_pred cccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEe
Q 041704 4 SVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYE 44 (86)
Q Consensus 4 ~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VE 44 (86)
.+..||.|.|+.|.++|.+|.|.+++ +.+.++.|.
T Consensus 194 ~~~~Gd~V~I~~Gpf~g~~G~v~ev~------~~k~~~~V~ 228 (248)
T 1m1h_A 194 EFEKGDQVRVIEGPFMNFTGTVEEVH------PEKRKLTVM 228 (248)
T ss_dssp -----------------------------------------
T ss_pred cCCCCCEEEEeccCCCCcEEEEEEEe------CCCCEEEEE
Confidence 46789999999999999999999998 766555443
No 20
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=91.18 E-value=0.22 Score=34.80 Aligned_cols=55 Identities=13% Similarity=-0.019 Sum_probs=44.8
Q ss_pred ccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEeceecccCCCcccCCCccEEEeeccC
Q 041704 5 VRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYEPIFDPRIPLEPVGHSSVMSSVGRMS 69 (86)
Q Consensus 5 IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VEgVn~~K~~g~pV~~snvmi~~~~~~ 69 (86)
+..|-.|.+..|.|.|+...|+.+. - ++++.|+|...++ +.++...+|.|.+-.+
T Consensus 7 vevGRVV~i~~Gr~aGk~avIV~ii------D-~~rvLVdG~~v~R---k~~n~khL~lT~~~v~ 61 (134)
T 3iz5_N 7 VEIGRVALVNYGKDYGRLVVIVDVV------D-QNRALVDAPDMVR---CQINFKRLSLTDIKID 61 (134)
T ss_dssp CCSSEEEECSCCSSSCCEEEEEEEC------S-SSEEEEEETTEEE---EEEECTTSEEEEEECC
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEc------C-CCeEEEeCCCccc---eeechhHeEEeCEEEe
Confidence 6778889999999999999999987 3 5789999987333 5778888999987653
No 21
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.78 E-value=0.4 Score=30.43 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=24.8
Q ss_pred CCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEe
Q 041704 8 DDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYE 44 (86)
Q Consensus 8 gDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VE 44 (86)
|-+|.|..|.|||..|.|..+. +..+.||
T Consensus 21 GktV~I~kGpyKG~~GiVkd~t--------~~~~RVE 49 (71)
T 2e70_A 21 GQTVRISQGPYKGYIGVVKDAT--------ESTARVE 49 (71)
T ss_dssp TSEEEECSSTTTTCEEEEEEEC--------SSCEEEE
T ss_pred CCEEEEeccCCCCeEEEEEECC--------CCeEEEE
Confidence 5689999999999999999998 4566666
No 22
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=89.45 E-value=0.98 Score=29.26 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=45.1
Q ss_pred cccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEeceecc-cCCCcccCCCccEEEeeccC
Q 041704 4 SVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYEPIFDP-RIPLEPVGHSSVMSSVGRMS 69 (86)
Q Consensus 4 ~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VEgVn~~-K~~g~pV~~snvmi~~~~~~ 69 (86)
-+..|-.|.+.+|.|+|+.--|+++. . .+.++|.|.... -.+-+.++...++.|....+
T Consensus 3 ~v~~GrVv~~~~Gr~~Gk~~VIv~~i------D-~~~vLV~gp~~~~~~~rk~~n~khl~~T~~~vd 62 (96)
T 2joy_A 3 AIEVGRICVKVKGREAGSKCVIVDII------D-DNFVLVTGPKDITGVKRRRVNILHLEPTDKKID 62 (96)
T ss_dssp SSSTTEEEECSSSSTTCCEEEEEEEC------S-SSCEEEECCTTTTCCCCEEESCSSCEEEEEECC
T ss_pred ccccCEEEEEeecCCCCCEEEEEEEe------C-CCEEEEECCcccCCcCCEEEchHHEEEeeEEEe
Confidence 36789899999999999998888885 3 567888887422 22346788888999987664
No 23
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=88.51 E-value=0.8 Score=29.26 Aligned_cols=58 Identities=10% Similarity=0.074 Sum_probs=43.1
Q ss_pred cccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEeceecccCCCcccCCCccEEEeecc
Q 041704 4 SVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYEPIFDPRIPLEPVGHSSVMSSVGRM 68 (86)
Q Consensus 4 ~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VEgVn~~K~~g~pV~~snvmi~~~~~ 68 (86)
-+..|-.|.+.+|.|+|+..-|+.+. . +.+++|.|....+.+-+.++...+..|....
T Consensus 3 ~~~~Grvv~~~~Gr~~Gk~~vIv~ii------D-~~~vlV~g~~~~~v~rk~kn~khl~lt~~~i 60 (83)
T 3j21_5 3 AIDVGRIAVVIAGRRAGQKVVVVDII------D-KNFVLVTGAGLNKVKRRRMNIKHIEPLPQKI 60 (83)
T ss_dssp CCCTTEEEECSSSSSSCCCEEEEEEC------S-SSCEEEECCTTTTCCCEEESCSSCEEEEEEC
T ss_pred ccccCEEEEEeecCCCCCEEEEEEEc------C-CCEEEEECCccCccCCeEechHHEEEeeEEE
Confidence 36788899999999999999999875 3 4688888875333344566677777777654
No 24
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=88.50 E-value=0.83 Score=32.06 Aligned_cols=57 Identities=16% Similarity=0.175 Sum_probs=44.6
Q ss_pred ccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEeceecccCCCcccCCCccEEEeeccC
Q 041704 5 VRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYEPIFDPRIPLEPVGHSSVMSSVGRMS 69 (86)
Q Consensus 5 IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VEgVn~~K~~g~pV~~snvmi~~~~~~ 69 (86)
+..|-.|.+..|.|.|+...|+.+. - .++|.|+|-.. ..+-+.++...++.|.+-.+
T Consensus 15 ve~GrVV~i~~Gr~aGk~avIV~ii------D-~~rVLVDGp~~-gV~R~~~n~khL~lT~~~v~ 71 (138)
T 3izc_N 15 VEVGRVVLIKKGQSAGKLAAIVEII------D-QKKVLIDGPKA-GVPRQAINLGQVVLTPLTFA 71 (138)
T ss_dssp SSTTEEEECCSCSSSCCEEEEEEEC------S-SSEEEEECSSS-SCCCEEEECSSSEEEEEECC
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEe------c-CCEEEEEcCCC-CcccceechhHeEEecEEEE
Confidence 5778889999999999999999987 3 57899999742 12225688888999887653
No 25
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=87.13 E-value=1 Score=31.26 Aligned_cols=55 Identities=16% Similarity=0.093 Sum_probs=44.5
Q ss_pred ccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEeceecccCCCcccCCCccEEEeeccC
Q 041704 5 VRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYEPIFDPRIPLEPVGHSSVMSSVGRMS 69 (86)
Q Consensus 5 IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VEgVn~~K~~g~pV~~snvmi~~~~~~ 69 (86)
|..|=.|.+..|.|.|+...|+.|. - .+++.|+|..+++ +.++...+++|++-.+
T Consensus 7 vevGRVv~i~~G~~aGklavIVdII------D-~nrvLVdGp~V~R---q~~n~k~l~LT~~~v~ 61 (126)
T 4a18_F 7 VQVGRVVYINYGADKGKLAVIVNII------N-QNRILIDGEHIVR---QVIPIRRVHLTKFQID 61 (126)
T ss_dssp EETTEEEEECSSTTTTEEEEEEEEE------T-TTEEEEEETTEEE---EEEEGGGEEEEEEECT
T ss_pred eecceEEEEccCCccCCEEEEEEEe------c-CCeEEEeCCCccc---ceeeccceEEcceecc
Confidence 5667788899999999999999987 3 4799999987332 4788889999988765
No 26
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=79.88 E-value=6.5 Score=27.80 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=44.2
Q ss_pred cccCCCEEEEeeccCCCeeeeEEEEEeccccCccc------ceEEEeceecccCCC-------------------cccCC
Q 041704 4 SVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRD------LVVSYEPIFDPRIPL-------------------EPVGH 58 (86)
Q Consensus 4 ~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk------~~V~VEgVn~~K~~g-------------------~pV~~ 58 (86)
-++.|-.|.|++|.|.|+..-|+++. ... +.+.|.||..--... +-++.
T Consensus 4 f~kpGrVvivl~Gr~aGkkaVIvk~i------D~gt~d~~y~~aLVaGIdryP~kvt~~m~kkki~kRskiK~FvK~vN~ 77 (144)
T 4a18_N 4 FLKYGRVVILLQGRFAGKKAVIVKSS------EDGTKDRKFGHVLVAGVERSPKKVTKRMGSKKIQKRTSVKPFIKYVNL 77 (144)
T ss_dssp CCCTTEEEEECSSTTTTCEEEEEEEE------SSCCSSCCSCEEEEEEEEECCCCCCSSCCHHHHHHTTCCEEEEEEEEG
T ss_pred cccCCeEEEEecCCcCCCEEEEEEec------CCCccCCccceEEEEecccCCchhccccchheeccccccceeEEEEee
Confidence 46788899999999999999998887 321 689999975433221 12677
Q ss_pred CccEEEeecc
Q 041704 59 SSVMSSVGRM 68 (86)
Q Consensus 59 snvmi~~~~~ 68 (86)
.-+|.|....
T Consensus 78 ~Hl~pTry~v 87 (144)
T 4a18_N 78 NHIMPTRYSV 87 (144)
T ss_dssp GGEEEEEEEC
T ss_pred eeEEEeeEEe
Confidence 7889988776
No 27
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=78.48 E-value=5.5 Score=29.38 Aligned_cols=57 Identities=14% Similarity=0.279 Sum_probs=38.9
Q ss_pred cccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEece-ecccCCCcccCCCccEEEeec
Q 041704 4 SVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYEPI-FDPRIPLEPVGHSSVMSSVGR 67 (86)
Q Consensus 4 ~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VEgV-n~~K~~g~pV~~snvmi~~~~ 67 (86)
.|..|..+++++|.+.|+..-+++.+ . .+.+.|-|- .+-+...+.++..-||-|.-.
T Consensus 44 si~pGtVlIiL~Gr~~GKrvV~LKql------~-sgllLVtGP~~vn~vplrrvn~~~vi~Tstk 101 (191)
T 4a18_E 44 DIAPGTVLILLAGRFRGKRVVFLKQL------K-SGLLLVTGPYKVNGVPLKRVNQAYTLSTSTK 101 (191)
T ss_dssp TCCTTEEEEECSSTTTTBEEEEEEEC------T-TSCEEEECCTTTSSCCSEEECGGGEEEEEEE
T ss_pred cccCCCEEEEeccccCCCEEEEEEec------C-CCeEEEecCccccCCceEEEeeeeEEeeeeE
Confidence 46789999999999999998888776 4 456666652 222344555566666666533
No 28
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=70.58 E-value=5.5 Score=29.55 Aligned_cols=50 Identities=10% Similarity=0.170 Sum_probs=37.2
Q ss_pred ccccCCCEEEEeeccCCCeeeeEEEEEeccccCccc----ceEEEeceecccCCCcccCCCccEEEe
Q 041704 3 MSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRD----LVVSYEPIFDPRIPLEPVGHSSVMSSV 65 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk----~~V~VEgVn~~K~~g~pV~~snvmi~~ 65 (86)
++...|-.+.|+.|+.-|+.|+|..+. +.. ..|.++ +.=....+||++.-
T Consensus 137 ikf~~G~l~mvtgG~n~GriG~I~~ie------~~~gs~~~iV~v~-------~~F~T~~~~vfvIG 190 (213)
T 3kbg_A 137 IKMQPGNKAYITAGSHVNQTGTISKIE------AKEGSSANLVHFQ-------EGFSTIKDHVFMIG 190 (213)
T ss_dssp ECCSTTCEEEECSSTTTTCEEEEEEEC------CCSCC--CEEEET-------TTEEEEGGGEEEEE
T ss_pred EEcCCCCEEEEECCCcceEEEEEEEEE------EccCCCCCEEEEE-------EEEEeeeceEEEEc
Confidence 466789999999999999999999987 432 457776 33344567777654
No 29
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=69.33 E-value=8.4 Score=29.52 Aligned_cols=60 Identities=22% Similarity=0.174 Sum_probs=41.8
Q ss_pred ccccCCCEEEEeeccCCCeeeeEEEEEeccccCccc---ceEEEeceecccCCCc--ccCCCccEEEeeccCCcee
Q 041704 3 MSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRD---LVVSYEPIFDPRIPLE--PVGHSSVMSSVGRMSPEVS 73 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk---~~V~VEgVn~~K~~g~--pV~~snvmi~~~~~~~~~~ 73 (86)
++...|-.+.|+.|..-|+.|+|..+. +.. ..|+|+ -++|. ....+||++.--+..|..|
T Consensus 173 ikfe~Gnl~mvtgG~n~GriG~I~~ie------~~~gs~~iV~vk-----d~~g~~F~T~~~nvfvIGk~~kp~Is 237 (265)
T 3iz6_D 173 IKFDVGNVVMVTGGRNTGRVGVIKNRE------KHKGSFETIHVE-----DALGHQFATRLGNVFTIGKGNKPWVS 237 (265)
T ss_dssp ECCSTTCEEEECSSSSCSCEEEEEEEE------CCSSSCCEEEEC-----CCSSCCEEEEGGGEEEEECSSCCCCC
T ss_pred EEccCCCEEEEEcCCcceEEEEEEEEE------EecCCCcEEEEE-----ECCCCeEEEEeCeEEEEccCCCeeEe
Confidence 466789999999999999999999998 533 356665 34454 3346888876544444443
No 30
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=66.88 E-value=5 Score=21.91 Aligned_cols=15 Identities=7% Similarity=0.437 Sum_probs=12.3
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 19 Ls~~~Gd~i~v~~~~ 33 (58)
T 1sem_A 19 LAFKRGDVITLINKD 33 (58)
T ss_dssp CCBCTTCEEEEEECS
T ss_pred cCCCCCCEEEEEEec
Confidence 678999999998743
No 31
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.42 E-value=5.5 Score=23.29 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=11.2
Q ss_pred ccccCCCEEEEee
Q 041704 3 MSVRKDDEVQVVG 15 (86)
Q Consensus 3 m~IrKgDeV~VI~ 15 (86)
+.+++||.+.|+.
T Consensus 31 Lsf~~Gd~i~v~~ 43 (75)
T 2ege_A 31 LALRAGDVVMVYG 43 (75)
T ss_dssp CCBCTTCEEEEES
T ss_pred ceECCCCEEEEeE
Confidence 5789999999995
No 32
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=64.96 E-value=5.5 Score=22.66 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=11.6
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 20 Lsf~~Gd~i~v~~~ 33 (67)
T 2bzy_A 20 LALEVGDIVKVTRM 33 (67)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred cccCCCCEEEEEEe
Confidence 57899999999874
No 33
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=64.94 E-value=5.4 Score=23.11 Aligned_cols=14 Identities=7% Similarity=0.325 Sum_probs=11.9
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 20 Lsf~~Gd~i~v~~~ 33 (68)
T 2ew3_A 20 LGFKEGDIITLTNQ 33 (68)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred cCCCCCCEEEEEEe
Confidence 67899999999874
No 34
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=64.07 E-value=6.1 Score=21.78 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=12.2
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 21 Ls~~~Gd~i~v~~~~ 35 (59)
T 2g6f_X 21 LSFSKGDVIHVTRVE 35 (59)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred cCCCCCCEEEEEEec
Confidence 578999999998743
No 35
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=63.63 E-value=12 Score=23.86 Aligned_cols=46 Identities=20% Similarity=0.350 Sum_probs=32.8
Q ss_pred ccCCCEEEEeecc--CCCeeeeEEEEEeccccCcccceEEEeceecccCC
Q 041704 5 VRKDDEVQVVGGT--YKGREGKFVQIFAIFSGVKRDLVVSYEPIFDPRIP 52 (86)
Q Consensus 5 IrKgDeV~VI~Gk--~KGk~GKV~~V~~~~~~~rkk~~V~VEgVn~~K~~ 52 (86)
|.+|+.|.|++=. +=+.+|+|..|+- ++++=.-.|..|++|..+..
T Consensus 2 i~rGs~VrIlr~eSywy~~vG~V~~Vd~--~~~~ypV~VrFekvNy~g~~ 49 (70)
T 1qp2_A 2 VQRGSKVRILRPESYWFQDVGTVASVDQ--SGIKYPVIVRFEKVNYSGIN 49 (70)
T ss_dssp CCTTCEEEECCTTSTTTTCEEEEEEECC--SSCSCSEEEECSSCCSSCCS
T ss_pred cCCCCEEEEcCccceeecceeEEEEEeC--CCcEeeEEEEeccccccccc
Confidence 7899999999876 5577899999991 22322246777888874443
No 36
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=63.33 E-value=6.4 Score=21.53 Aligned_cols=14 Identities=21% Similarity=0.473 Sum_probs=11.8
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 18 Ls~~~Gd~i~v~~~ 31 (58)
T 1uti_A 18 LGFRSGEVVEVLDS 31 (58)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred CCCCCCCEEEEEEE
Confidence 57899999999874
No 37
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Probab=61.66 E-value=6.8 Score=22.47 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=12.3
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 18 Ls~~~Gd~i~v~~~~ 32 (65)
T 2nwm_A 18 LTLQKGDIVYIHKEV 32 (65)
T ss_dssp CCBCTTCEEEEEECC
T ss_pred cCCcCCCEEEEEEec
Confidence 578999999998743
No 38
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=61.49 E-value=7.1 Score=21.62 Aligned_cols=15 Identities=7% Similarity=0.266 Sum_probs=12.1
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 21 Ls~~~Gd~i~v~~~~ 35 (60)
T 1w70_A 21 LNFKAGDVIFLLSRI 35 (60)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred ccCCCCCEEEEEEeC
Confidence 578999999998743
No 39
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=61.11 E-value=16 Score=27.87 Aligned_cols=58 Identities=12% Similarity=0.159 Sum_probs=40.1
Q ss_pred ccccCCCEEEEeeccCCCeeeeEEEEEeccccCccc---ceEEEeceecccCCCc--ccCCCccEEEeec-cCCce
Q 041704 3 MSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRD---LVVSYEPIFDPRIPLE--PVGHSSVMSSVGR-MSPEV 72 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk---~~V~VEgVn~~K~~g~--pV~~snvmi~~~~-~~~~~ 72 (86)
++...|-.+.|+.|..-|+.|+|..+. +.. ..|+++. ++|. ....+|||+ .+. ..|..
T Consensus 175 ikfe~G~l~mvtgG~n~GriG~I~~~e------~~~gs~~iV~vkd-----~~g~~F~T~~~~vfv-IG~~~kp~I 238 (260)
T 2xzm_W 175 AHLESGNVCYIQQGNNIGRVGIIQHIE------KHQGSFDICHVKD-----AKGNAFATRLGNIFV-LGQGKKSWI 238 (260)
T ss_dssp CBCCSSCEEEECSSTTTTCEEEEEEEE------CCCSSCCEEEEEC-----TTCCCEEEEGGGEEE-EESTTCCSS
T ss_pred EEecCCCEEEEECCccceeEEEEEEEE------ecCCCCcEEEEEe-----CCCCeEEEEEeeEEE-ECCCCceeE
Confidence 466788999999999999999999865 332 4677764 3343 233599977 444 34544
No 40
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=60.63 E-value=5.6 Score=22.69 Aligned_cols=15 Identities=13% Similarity=0.171 Sum_probs=11.9
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 25 Ls~~~Gd~i~v~~~~ 39 (67)
T 2eyx_A 25 LALEVGELVKVTKIN 39 (67)
T ss_dssp CCBCSSEEEEEEEEC
T ss_pred cccCCCCEEEEEEec
Confidence 578999999998643
No 41
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Probab=60.51 E-value=7.6 Score=21.64 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=12.1
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 23 Ls~~~Gd~i~v~~~~ 37 (64)
T 2ak5_A 23 LSFSKGDVIHVTRVE 37 (64)
T ss_dssp CCBCTTCEEEEEECC
T ss_pred ccCCCCCEEEEeEec
Confidence 578999999998743
No 42
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=59.96 E-value=8 Score=21.04 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=11.8
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 19 Ls~~~Gd~i~v~~~ 32 (58)
T 2vwf_A 19 LGFRRGDFIHVMDN 32 (58)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred cCCCCCCEEEEEEc
Confidence 57899999999874
No 43
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=59.95 E-value=7.3 Score=22.55 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=11.2
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 27 Ls~~~Gd~i~v~~~ 40 (74)
T 1j3t_A 27 LNFSKHDIITVLEQ 40 (74)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred cCCCCCCEEEEEec
Confidence 56789999998863
No 44
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=59.59 E-value=9.6 Score=21.13 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=12.2
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 22 Ls~~~Gd~i~v~~~~ 36 (62)
T 1k4u_S 22 LEFQEGDIILVLSKV 36 (62)
T ss_dssp CCBCSSCEEEEEEES
T ss_pred ccCCCCCEEEEEEeC
Confidence 578999999998753
No 45
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=58.93 E-value=7.9 Score=22.53 Aligned_cols=13 Identities=23% Similarity=0.644 Sum_probs=11.3
Q ss_pred ccccCCCEEEEee
Q 041704 3 MSVRKDDEVQVVG 15 (86)
Q Consensus 3 m~IrKgDeV~VI~ 15 (86)
+.+++||.+.|+.
T Consensus 24 Ls~~~Gd~i~v~~ 36 (78)
T 2yuo_A 24 LGFRKNDIITIIS 36 (78)
T ss_dssp CCBCTTCEEEEEE
T ss_pred ccCCCCCEEEEEE
Confidence 5789999999986
No 46
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=58.90 E-value=8.4 Score=21.30 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=11.7
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 23 Ls~~~Gd~i~v~~~ 36 (60)
T 2gnc_A 23 LSFKKGASLLLYHR 36 (60)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred cCCCCCCEEEEEEe
Confidence 57899999999874
No 47
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=58.41 E-value=8.7 Score=21.17 Aligned_cols=15 Identities=13% Similarity=0.390 Sum_probs=12.1
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 22 Ls~~~Gd~i~v~~~~ 36 (60)
T 2xmf_A 22 LSFNANDIIDIIKED 36 (60)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred cCCCCCCEEEEEEec
Confidence 578999999998744
No 48
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A
Probab=58.25 E-value=10 Score=21.33 Aligned_cols=14 Identities=21% Similarity=0.320 Sum_probs=11.6
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 24 Ls~~~Gd~i~v~~~ 37 (68)
T 2dl3_A 24 LPLQKGDIVYIYKQ 37 (68)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred ccCCCCCEEEEeEe
Confidence 57899999999874
No 49
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=58.02 E-value=8.8 Score=21.35 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=11.9
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 18 Ls~~~Gd~i~v~~~ 31 (62)
T 2j6f_A 18 LTIRVGEIIRNVKK 31 (62)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred cCCcCCCEEEEEEe
Confidence 57899999999875
No 50
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=57.72 E-value=9.8 Score=22.25 Aligned_cols=14 Identities=14% Similarity=0.342 Sum_probs=11.6
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.|.|+.=
T Consensus 30 Ls~~~Gd~i~vl~~ 43 (79)
T 1uhc_A 30 LSVSANQKLKILEF 43 (79)
T ss_dssp CCBCTTCEEEEEES
T ss_pred cCCCCCCEEEEEEC
Confidence 57899999999873
No 51
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Probab=57.70 E-value=8.7 Score=22.15 Aligned_cols=15 Identities=13% Similarity=0.333 Sum_probs=12.1
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 30 Ls~~~Gd~i~v~~~~ 44 (73)
T 3c0c_A 30 LGFREGDLITLTNQI 44 (73)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred ccCcCCCEEEEEEec
Confidence 578999999998743
No 52
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=57.38 E-value=13 Score=20.10 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=13.6
Q ss_pred ccccCCCEEEEeeccCC
Q 041704 3 MSVRKDDEVQVVGGTYK 19 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~K 19 (86)
+.+++||.+.|+.-...
T Consensus 18 Ls~~~Gd~i~v~~~~~~ 34 (58)
T 1zuy_A 18 LPLKKGDVIYITREEPS 34 (58)
T ss_dssp CCBCTTCEEEEEEECTT
T ss_pred CCCCCCCEEEEEEecCC
Confidence 67899999999886544
No 53
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=57.35 E-value=0.035 Score=37.45 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=19.1
Q ss_pred cccCCCEEEEeeccCCCeeeeEEEEE
Q 041704 4 SVRKDDEVQVVGGTYKGREGKFVQIF 29 (86)
Q Consensus 4 ~IrKgDeV~VI~Gk~KGk~GKV~~V~ 29 (86)
.+..||.|.|+.|.++|.+|.|.+++
T Consensus 109 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~ 134 (162)
T 2oug_A 109 TPYPGDKVIITEGAFEGFQAIFTEPD 134 (162)
T ss_dssp ------CTTHHHHHHHHHHHHTTCSS
T ss_pred CCCCCCEEEEcccCCCCcEEEEEEEC
Confidence 46789999999999999999998887
No 54
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.08 E-value=10 Score=21.46 Aligned_cols=14 Identities=7% Similarity=0.140 Sum_probs=11.3
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 24 Ls~~~Gd~i~v~~~ 37 (68)
T 1x2k_A 24 LYFEEGDIIYITDM 37 (68)
T ss_dssp CCCCSSCEEEEEEC
T ss_pred ccCCCCCEEEEEEc
Confidence 56889999999863
No 55
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.12 E-value=9.6 Score=21.90 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=11.2
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 26 Ls~~~Gd~i~v~~~ 39 (72)
T 2dl8_A 26 LSFKKGASLLLYQR 39 (72)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred eccCCCCEEEEEee
Confidence 56889999988863
No 56
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1
Probab=56.05 E-value=12 Score=21.35 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=11.3
Q ss_pred ccccCCCEEEEee
Q 041704 3 MSVRKDDEVQVVG 15 (86)
Q Consensus 3 m~IrKgDeV~VI~ 15 (86)
+.+++||.+.|+.
T Consensus 28 Ls~~~Gd~i~v~~ 40 (71)
T 1csk_A 28 LPFCKGDVLTIVA 40 (71)
T ss_dssp CCBCTTCEEEEEE
T ss_pred CCCCCCCEEEEeE
Confidence 5688999999988
No 57
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=55.91 E-value=10 Score=20.72 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=12.1
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 19 Ls~~~Gd~i~v~~~~ 33 (58)
T 1zx6_A 19 LGLKPGDKVQLLEKL 33 (58)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred ccCCCCCEEEEEEec
Confidence 578999999998643
No 58
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A
Probab=55.33 E-value=10 Score=21.03 Aligned_cols=14 Identities=7% Similarity=0.451 Sum_probs=11.7
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 23 Ls~~~Gd~i~v~~~ 36 (64)
T 2jte_A 23 LTFREGEIIHLISK 36 (64)
T ss_dssp CCBCTTCEEEEEES
T ss_pred cCCCCCCEEEEEEC
Confidence 57899999999864
No 59
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A
Probab=55.28 E-value=12 Score=21.84 Aligned_cols=14 Identities=14% Similarity=0.529 Sum_probs=11.4
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 28 Ls~~~Gd~i~v~~~ 41 (73)
T 2ebp_A 28 LKLKKGDIIDIISK 41 (73)
T ss_dssp CCBCSSCEEEEEEC
T ss_pred cCCCCCCEEEEEEe
Confidence 57889999999874
No 60
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=55.13 E-value=13 Score=20.20 Aligned_cols=16 Identities=13% Similarity=0.385 Sum_probs=12.7
Q ss_pred ccccCCCEEEEeeccC
Q 041704 3 MSVRKDDEVQVVGGTY 18 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~ 18 (86)
+.+++||.+.|+.-..
T Consensus 18 Ls~~~Gd~i~v~~~~~ 33 (58)
T 1zuu_A 18 ITITPGDKISLVARDT 33 (58)
T ss_dssp CCBCTTCCEEEEECCS
T ss_pred ccCCCCCEEEEeEcCC
Confidence 5789999999987543
No 61
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A
Probab=54.51 E-value=11 Score=20.65 Aligned_cols=15 Identities=20% Similarity=0.477 Sum_probs=12.3
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 20 Ls~~~Gd~i~v~~~~ 34 (60)
T 1oot_A 20 LPFRKGDVITILKKS 34 (60)
T ss_dssp CCBCTTCEEEEEECC
T ss_pred eeEcCCCEEEEEEeC
Confidence 678999999998753
No 62
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1
Probab=54.36 E-value=11 Score=20.93 Aligned_cols=14 Identities=7% Similarity=0.387 Sum_probs=11.8
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 22 Ls~~~Gd~i~v~~~ 35 (62)
T 1uj0_A 22 LTFKHGELITVLDD 35 (62)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred cCCCCCCEEEEEEe
Confidence 57899999999874
No 63
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Probab=54.31 E-value=11 Score=21.93 Aligned_cols=14 Identities=14% Similarity=0.501 Sum_probs=11.8
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 19 Ls~~~Gd~i~vl~~ 32 (69)
T 2ydl_A 19 LTIKEGDIVTLINK 32 (69)
T ss_dssp CCBCTTCEEEEEES
T ss_pred cccCCCCEEEEEEc
Confidence 67899999999864
No 64
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}
Probab=54.30 E-value=11 Score=20.54 Aligned_cols=14 Identities=7% Similarity=0.140 Sum_probs=11.7
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 20 Ls~~~Gd~i~v~~~ 33 (58)
T 1zlm_A 20 LYFEEGDIIYITDM 33 (58)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred ccCCCCCEEEEEEe
Confidence 57899999999864
No 65
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Probab=54.25 E-value=11 Score=21.59 Aligned_cols=14 Identities=14% Similarity=0.501 Sum_probs=11.7
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 26 Ls~~~Gd~i~v~~~ 39 (73)
T 2k9g_A 26 LTIKEGDIVTLINK 39 (73)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred eeECCCCEEEEEEC
Confidence 57899999999864
No 66
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A
Probab=54.19 E-value=14 Score=20.46 Aligned_cols=14 Identities=7% Similarity=0.425 Sum_probs=11.8
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 23 Ls~~~Gd~i~v~~~ 36 (62)
T 2iim_A 23 LGFEKGEQLRILEQ 36 (62)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred cCCCCCCEEEEEEc
Confidence 56899999999875
No 67
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A
Probab=53.86 E-value=12 Score=20.56 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=11.3
Q ss_pred ccccCCCEEEEee
Q 041704 3 MSVRKDDEVQVVG 15 (86)
Q Consensus 3 m~IrKgDeV~VI~ 15 (86)
+.+++||.+.|+.
T Consensus 22 Ls~~~Gd~i~v~~ 34 (63)
T 3eg3_A 22 LSITKGEKLRVLG 34 (63)
T ss_dssp CCBCTTCEEEEEE
T ss_pred cCCCCCCEEEEEE
Confidence 6789999999987
No 68
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.81 E-value=11 Score=21.62 Aligned_cols=14 Identities=7% Similarity=0.271 Sum_probs=11.8
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 25 Lsf~~Gd~i~v~~~ 38 (73)
T 2dl7_A 25 LSFPEGAIIRILNK 38 (73)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred CCCCCCCEEEEEEC
Confidence 57899999999874
No 69
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.81 E-value=13 Score=21.79 Aligned_cols=14 Identities=14% Similarity=0.468 Sum_probs=11.4
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 27 Ls~~~Gd~i~v~~~ 40 (81)
T 2ysq_A 27 LAFKAGDVIKVLDA 40 (81)
T ss_dssp CCCCTTCEEEEEEC
T ss_pred CCCCCCCEEEEEEE
Confidence 56889999999874
No 70
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.62 E-value=10 Score=22.11 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=11.4
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 27 Ls~~~Gd~i~v~~~ 40 (76)
T 2epd_A 27 LSFRRGDVLRLHER 40 (76)
T ss_dssp CEECTTCEEEEEEE
T ss_pred cCCCCCCEEEEEEe
Confidence 56789999999874
No 71
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.25 E-value=10 Score=21.54 Aligned_cols=14 Identities=21% Similarity=0.181 Sum_probs=11.4
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 24 Ls~~~Gd~i~v~~~ 37 (68)
T 2dmo_A 24 LQVMPGNIVFVLKK 37 (68)
T ss_dssp CCCCTTCEEEECEE
T ss_pred CCCCCCCEEEEEEe
Confidence 57899999999863
No 72
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine kinase, signal transduction; NMR {Homo sapiens} PDB: 1wa7_A
Probab=52.22 E-value=12 Score=20.79 Aligned_cols=15 Identities=20% Similarity=0.477 Sum_probs=12.0
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 24 Ls~~~Gd~i~v~~~~ 38 (65)
T 1w1f_A 24 LSFKKGEKMKVLEEH 38 (65)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred CCCCCCCEEEEEEcC
Confidence 578999999998743
No 73
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=51.19 E-value=13 Score=21.24 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=10.5
Q ss_pred ccccCCCEEEEee
Q 041704 3 MSVRKDDEVQVVG 15 (86)
Q Consensus 3 m~IrKgDeV~VI~ 15 (86)
+.+++||.+.|+.
T Consensus 25 Ls~~~Gd~i~v~~ 37 (69)
T 1uhf_A 25 LTFTEGEEILVTQ 37 (69)
T ss_dssp CCBCTTCEEEECE
T ss_pred cCCCCCCEEEEEE
Confidence 5678999998875
No 74
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.07 E-value=15 Score=20.80 Aligned_cols=14 Identities=14% Similarity=0.401 Sum_probs=11.6
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 24 Ls~~~Gd~i~v~~~ 37 (68)
T 2dl4_A 24 LEMRPGDIITLLED 37 (68)
T ss_dssp CCCCTTCEEEEEEC
T ss_pred cCCCCCCEEEEEEe
Confidence 57899999999873
No 75
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=50.69 E-value=22 Score=19.06 Aligned_cols=15 Identities=27% Similarity=0.539 Sum_probs=12.4
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 17 Ls~~~Gd~i~v~~~~ 31 (54)
T 2a28_A 17 ISIDPGDIITVIRGD 31 (54)
T ss_dssp CCBCTTCEEEEEECC
T ss_pred ccCCCCCEEEEEEec
Confidence 678999999998754
No 76
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.43 E-value=15 Score=21.97 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=11.8
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 35 Lsf~~Gd~i~v~~~~ 49 (88)
T 2dbk_A 35 LALEVGDIVKVTRMN 49 (88)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred ccCCCCCEEEEEEec
Confidence 568899999988743
No 77
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=50.05 E-value=8.3 Score=29.47 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=40.7
Q ss_pred ccccCCCEEEEeeccCCCeeeeEEEEEeccccCccc---ceEEEeceecccCCCc--ccCCCccEEEeeccCCce
Q 041704 3 MSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRD---LVVSYEPIFDPRIPLE--PVGHSSVMSSVGRMSPEV 72 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk---~~V~VEgVn~~K~~g~--pV~~snvmi~~~~~~~~~ 72 (86)
++...|-.+.|+.|..-|+.|+|..+. +.. ..|+|+ -++|. ....+||++.--+..|..
T Consensus 173 ikfe~Gnl~mvtgG~n~GriG~I~~ie------~~~gs~~iV~vk-----d~~g~~F~T~~~nvfvIGk~~kp~I 236 (261)
T 3u5c_E 173 IKFDAGKLVYVTGGRNLGRIGTIVHKE------RHDGGFDLVHIK-----DSLDNTFVTRLNNVFVIGEQGKPYI 236 (261)
T ss_dssp ECCCSSCCEEECSSTTTTCBCCCCEEE------CCTTSCCEEEEE-----CTTSCEEEEEGGGEEECCSSSCCSS
T ss_pred EEccCCCEEEEEcCCcceEEEEEEEEE------EecCCCcEEEEE-----ECCCCeEEEEeCeEEEEccCCCeeE
Confidence 466778999999999999999999998 433 356665 34454 334688877554334433
No 78
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.59 E-value=13 Score=21.63 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=11.5
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 34 Ls~~~Gd~i~v~~~ 47 (79)
T 1x69_A 34 ISFDPDDIITNIEM 47 (79)
T ss_dssp CCCCTTCEEEEEEE
T ss_pred cCcCCCCEEEEeEe
Confidence 56899999999864
No 79
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=49.45 E-value=12 Score=27.20 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=22.5
Q ss_pred cccCCCEEEEeeccCCCeeeeEEEEEeccccCc
Q 041704 4 SVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVK 36 (86)
Q Consensus 4 ~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~r 36 (86)
|+|.||.|++ .|.+|.|.++..-.|.++
T Consensus 128 pf~vGD~I~i-----~~~~G~V~~I~l~~T~i~ 155 (285)
T 3udc_A 128 QFSVGDYVTI-----NGISGTVEEIGLRVTKIR 155 (285)
T ss_dssp SCCTTCEEEE-----TTEEEEEEEECSSEEEEE
T ss_pred CccCCCEEEE-----CCEEEEEEEeeeeEEEEe
Confidence 7899999998 478899999985555554
No 80
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=49.40 E-value=21 Score=20.67 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=12.5
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 35 Lsf~~Gd~i~v~~~~ 49 (78)
T 1k1z_A 35 LRLNPGDIVELTKAE 49 (78)
T ss_dssp CCBCTTCEEEEEECC
T ss_pred cCCCCCCEEEEEEcC
Confidence 578999999999863
No 81
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}
Probab=49.36 E-value=9.7 Score=21.85 Aligned_cols=14 Identities=7% Similarity=0.268 Sum_probs=11.5
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 18 Ls~~~Gd~i~v~~~ 31 (65)
T 2fei_A 18 LELKVGDIIDINEE 31 (65)
T ss_dssp CCCCTTCEEECCCC
T ss_pred cCCCCCCEEEEEEe
Confidence 57899999999863
No 82
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=48.98 E-value=13 Score=21.06 Aligned_cols=14 Identities=14% Similarity=0.501 Sum_probs=11.2
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 24 Ls~~~Gd~i~v~~~ 37 (70)
T 2da9_A 24 LTIKEGDIVTLINK 37 (70)
T ss_dssp CCCCTTEEEEEEEC
T ss_pred eeEcCCCEEEEEEC
Confidence 56789999988864
No 83
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=48.82 E-value=22 Score=19.98 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=12.2
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 27 Lsf~~Gd~i~v~~~ 40 (70)
T 1gcq_C 27 LRLNPGDIVELTKA 40 (70)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred CCcCCCCEEEEEeC
Confidence 67899999999886
No 84
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}
Probab=48.58 E-value=15 Score=20.70 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=11.7
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 25 Ls~~~Gd~i~v~~~ 38 (69)
T 2dil_A 25 LDLSAGDILEVILE 38 (69)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred cCCCCCCEEEEEEC
Confidence 57899999999864
No 85
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=48.23 E-value=34 Score=21.49 Aligned_cols=41 Identities=17% Similarity=0.085 Sum_probs=33.6
Q ss_pred cccCCCEEEEeecc--CCCeeeeEEEEEeccccCcccceEEEeceeccc
Q 041704 4 SVRKDDEVQVVGGT--YKGREGKFVQIFAIFSGVKRDLVVSYEPIFDPR 50 (86)
Q Consensus 4 ~IrKgDeV~VI~Gk--~KGk~GKV~~V~~~~~~~rkk~~V~VEgVn~~K 50 (86)
+|..|-.|.|..-. |.|-+|-|.+|. ..+--|..||=|+.|
T Consensus 1 ~ilPG~~V~V~np~~~Yy~y~G~VQRvs------dgkaaVLFEGGnWDK 43 (66)
T 2jz2_A 1 MIFPGATVRVTNVDDTYYRFEGLVQRVS------DGKAAVLFENGNWDK 43 (66)
T ss_dssp CCCTTCEEEECCTTSTTBTCEEEEEEEE------TTEEEEEEESSSCEE
T ss_pred CccCCCEEEEeCCCCcccceeEEEEEec------CCcEEEEecCCCcee
Confidence 36678889988765 889999999999 777788999977655
No 86
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.21 E-value=14 Score=21.92 Aligned_cols=13 Identities=15% Similarity=0.437 Sum_probs=11.1
Q ss_pred ccccCCCEEEEee
Q 041704 3 MSVRKDDEVQVVG 15 (86)
Q Consensus 3 m~IrKgDeV~VI~ 15 (86)
+.+++||.+.|+.
T Consensus 25 Lsf~~Gd~i~v~~ 37 (85)
T 2dlp_A 25 LSFHRGDLIKLLP 37 (85)
T ss_dssp CCBCTTCEEEECC
T ss_pred ccCcCCCEEEEEE
Confidence 5789999999986
No 87
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Probab=48.04 E-value=21 Score=20.09 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=13.3
Q ss_pred ccccCCCEEEEeeccCC
Q 041704 3 MSVRKDDEVQVVGGTYK 19 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~K 19 (86)
+.+++||.+.|+.-...
T Consensus 20 Ls~~~Gd~i~v~~~~~~ 36 (69)
T 1ruw_A 20 LPLKKGDIVFISRDEPS 36 (69)
T ss_dssp CCBCTTCEEEEEEECTT
T ss_pred ccCCCCCEEEEEEecCC
Confidence 57899999999875433
No 88
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=47.91 E-value=23 Score=26.62 Aligned_cols=52 Identities=23% Similarity=0.161 Sum_probs=38.5
Q ss_pred ccccCCCEEEEeeccCCCeeeeEEEEEeccccCcc----cceEEEeceecccCCCc--ccCCCccEEEe
Q 041704 3 MSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKR----DLVVSYEPIFDPRIPLE--PVGHSSVMSSV 65 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rk----k~~V~VEgVn~~K~~g~--pV~~snvmi~~ 65 (86)
++...|-.+.|+.|+.-|+.|+|..+. +. ...|++++ ++|. ....+||++.-
T Consensus 177 ikf~~G~l~mvtgG~n~GriG~I~~ie------~~~gs~~~~V~v~d-----~~g~~F~T~~~~vfvIG 234 (243)
T 3j20_E 177 LPFEKGAYVFVTQGKNVARKGRIVEIK------RFPMGWPDVVTIED-----EEGELFDTLKEYAFVVG 234 (243)
T ss_dssp EECCTTCEEEECSSSSTTCEEEEEECC------CCCSSSCCEEEEEE-----SSCCCEEEETTTEEEEE
T ss_pred EeccCCCEEEEECCccceEEEEEEEEE------EecCCCceEEEEEc-----CCCCEEEEEeceEEEEC
Confidence 356779999999999999999999887 32 35677773 3443 44578887754
No 89
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Probab=47.40 E-value=19 Score=19.60 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=11.5
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 20 Ls~~~Gd~i~v~~~ 33 (60)
T 2x3w_D 20 LSFKAGDELTKLGE 33 (60)
T ss_dssp CCBCTTCEEEECSC
T ss_pred ccCCCCCEEEEEEc
Confidence 57899999999864
No 90
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Probab=47.09 E-value=10 Score=21.76 Aligned_cols=15 Identities=7% Similarity=0.291 Sum_probs=12.0
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 24 Ls~~~Gd~i~v~~~~ 38 (73)
T 2dbm_A 24 LGFKEGDIITLTNQI 38 (73)
T ss_dssp CCBCTTCEEECCBCS
T ss_pred ccCCCCCEEEEEEec
Confidence 578999999998743
No 91
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.78 E-value=12 Score=21.22 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=12.0
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.|.|+.-.
T Consensus 25 Ls~~~Gd~i~v~~~~ 39 (70)
T 2ega_A 25 LSLQAGEVVDVIEKN 39 (70)
T ss_dssp CCCCTTCBCEEEEEC
T ss_pred ccCCCCCEEEEEEcc
Confidence 578899999998743
No 92
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=46.58 E-value=22 Score=20.40 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=11.4
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 27 Ls~~~Gd~i~v~~~ 40 (77)
T 2enm_A 27 LTVTEGEIITVTNP 40 (77)
T ss_dssp CCCCTTCEEEEEES
T ss_pred ecCCCCCEEEEeEc
Confidence 56789999998874
No 93
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=46.52 E-value=10 Score=21.95 Aligned_cols=14 Identities=36% Similarity=0.287 Sum_probs=11.4
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 27 Ls~~~Gd~i~v~~~ 40 (76)
T 1ujy_A 27 LSVCKGDIIYVTRV 40 (76)
T ss_dssp CCBCSSCCEEESSC
T ss_pred ccCCCCCEEEEEEe
Confidence 57889999998863
No 94
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}
Probab=45.86 E-value=22 Score=20.09 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=11.0
Q ss_pred ccccCCCEEEEee
Q 041704 3 MSVRKDDEVQVVG 15 (86)
Q Consensus 3 m~IrKgDeV~VI~ 15 (86)
+.+++||.+.|+.
T Consensus 24 Lsf~~Gd~i~v~~ 36 (70)
T 2vkn_A 24 ISFEQNEILQVSD 36 (70)
T ss_dssp CCBCTTCEEEEEC
T ss_pred ccCCCCCEEEEEE
Confidence 6789999999876
No 95
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.74 E-value=17 Score=21.15 Aligned_cols=15 Identities=13% Similarity=0.248 Sum_probs=11.9
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 34 Lsf~~Gd~i~v~~~~ 48 (78)
T 2ed0_A 34 LSFQEGAIIYVIKKN 48 (78)
T ss_dssp CCBCSSCEEEEEEEC
T ss_pred ccccCCCEEEEEEeC
Confidence 578899999998743
No 96
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=45.72 E-value=8.5 Score=22.21 Aligned_cols=13 Identities=15% Similarity=0.092 Sum_probs=10.6
Q ss_pred ccccCCCEEEEee
Q 041704 3 MSVRKDDEVQVVG 15 (86)
Q Consensus 3 m~IrKgDeV~VI~ 15 (86)
+.+++||.+.|+.
T Consensus 27 Lsf~~Gd~i~v~~ 39 (72)
T 1ugv_A 27 LSFTAGTVFDNVH 39 (72)
T ss_dssp CCBCTTCEEBSCC
T ss_pred eCCcCCCEEEEEE
Confidence 5788999998875
No 97
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}
Probab=45.45 E-value=21 Score=20.12 Aligned_cols=13 Identities=15% Similarity=0.514 Sum_probs=10.8
Q ss_pred ccccCCCEEEEee
Q 041704 3 MSVRKDDEVQVVG 15 (86)
Q Consensus 3 m~IrKgDeV~VI~ 15 (86)
+.+++||.+.|+.
T Consensus 24 Ls~~~Gd~i~v~~ 36 (68)
T 1wxt_A 24 LTVVQGEKLEVLD 36 (68)
T ss_dssp CCBCTTCEEEEEE
T ss_pred CCCCCCCEEEEEE
Confidence 5788999999886
No 98
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A
Probab=44.84 E-value=16 Score=21.35 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=11.0
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 42 Ls~~~Gd~i~v~~~ 55 (86)
T 2oi3_A 42 LSFQKGDQMVVLEE 55 (86)
T ss_dssp CCCCTTCEEEEEEE
T ss_pred CcCCCCCEEEEEEc
Confidence 56788999888874
No 99
>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A
Probab=42.93 E-value=20 Score=19.57 Aligned_cols=13 Identities=38% Similarity=0.664 Sum_probs=11.1
Q ss_pred ccccCCCEEEEee
Q 041704 3 MSVRKDDEVQVVG 15 (86)
Q Consensus 3 m~IrKgDeV~VI~ 15 (86)
+.+++||.+.|+.
T Consensus 18 Ls~~~Gd~i~v~~ 30 (60)
T 1i07_A 18 LSVMKDDVLEILD 30 (60)
T ss_dssp CCBCTTCEEEECG
T ss_pred ccCCCCCEEEEEE
Confidence 5789999999986
No 100
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=42.61 E-value=18 Score=21.33 Aligned_cols=14 Identities=7% Similarity=0.366 Sum_probs=11.4
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 34 Lsf~~Gd~i~Vl~~ 47 (72)
T 2l0a_A 34 LTFKAGEIITVLDD 47 (72)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred cCCCCCCEEEEEEe
Confidence 56889999999863
No 101
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1
Probab=41.76 E-value=30 Score=19.54 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=12.1
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 20 Lsf~~Gd~i~v~~~~ 34 (65)
T 1b07_A 20 LPFKKGDILRIRDKP 34 (65)
T ss_dssp CCBCTTCEEEEEECS
T ss_pred cCCcCCCEEEEEEec
Confidence 578999999998743
No 102
>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.25A {Thermotoga maritima} PDB: 3n99_A
Probab=41.42 E-value=16 Score=28.44 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.2
Q ss_pred CCCEEEEeeccCCCeeeeEEEE
Q 041704 7 KDDEVQVVGGTYKGREGKFVQI 28 (86)
Q Consensus 7 KgDeV~VI~Gk~KGk~GKV~~V 28 (86)
-|.+..|++|..||.+|-|+-=
T Consensus 86 iGN~A~VvSG~AKG~~G~VtGk 107 (284)
T 3dcl_A 86 IGNEVIVMSGDAKGSRGFVTGK 107 (284)
T ss_dssp BTCEEEECSSTTTTCEEEEEEE
T ss_pred cCceeEEeecccCCCcceEecc
Confidence 4889999999999999988753
No 103
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.36 E-value=22 Score=20.84 Aligned_cols=15 Identities=33% Similarity=0.306 Sum_probs=11.8
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.|.|+.-.
T Consensus 25 Ls~~~Gd~i~vl~~~ 39 (80)
T 2ekh_A 25 ISFPAGVEVQVLEKQ 39 (80)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred cCcCCCCEEEEEEeC
Confidence 578899999998643
No 104
>1dj7_B Ferredoxin thioredoxin reductase: variable chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: b.34.4.3 PDB: 2pu9_B 2pvo_B 2puo_B 2puk_B 2pvd_B 2pvg_B
Probab=41.12 E-value=25 Score=22.44 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=19.4
Q ss_pred cCCCEEEEeec--------------cCCCeeeeEEEEEe
Q 041704 6 RKDDEVQVVGG--------------TYKGREGKFVQIFA 30 (86)
Q Consensus 6 rKgDeV~VI~G--------------k~KGk~GKV~~V~~ 30 (86)
+.||.|.|.+. +.+|.+|.|.++..
T Consensus 2 k~GdrVrV~~sv~Vyh~P~~r~~~fDl~GmEGeV~~~v~ 40 (75)
T 1dj7_B 2 NVGDRVRVTSSVVVYHHPEHKKTAFDLQGMEGEVAAVLT 40 (75)
T ss_dssp CTTCEEEECSCCEESCCTTSTTSCEECTTCEEEEEEECS
T ss_pred CCCCEEEEcccEEEEeCCccCCCCcccccCEEEEEEEEe
Confidence 56899988754 35789999999873
No 105
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G 3o58_F 3o5h_F 3u5e_E 3u5i_E 4b6a_E
Probab=40.72 E-value=39 Score=24.49 Aligned_cols=25 Identities=8% Similarity=0.381 Sum_probs=21.7
Q ss_pred ccCCCEEEEeeccCCCeeeeEEEEE
Q 041704 5 VRKDDEVQVVGGTYKGREGKFVQIF 29 (86)
Q Consensus 5 IrKgDeV~VI~Gk~KGk~GKV~~V~ 29 (86)
|..|..+++++|.++|+..-+++..
T Consensus 34 i~pGtvlIil~Gr~~GkrvVfLKql 58 (176)
T 3izc_G 34 LVPGTVLILLAGRFRGKRVVYLKHL 58 (176)
T ss_dssp CCCCSCEECCSSSSSCCCBEEEEES
T ss_pred CCCCCEEEEeccccCCCEEEEEEec
Confidence 5679999999999999998777776
No 106
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Probab=40.23 E-value=25 Score=19.81 Aligned_cols=14 Identities=14% Similarity=0.430 Sum_probs=11.5
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 23 Ls~~~Gd~i~v~~~ 36 (71)
T 1u5s_A 23 LNFEKGETMEVIEK 36 (71)
T ss_dssp CCCCSSCCEEEEEC
T ss_pred ccCCCCCEEEEEEC
Confidence 56889999999875
No 107
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=39.83 E-value=35 Score=24.65 Aligned_cols=28 Identities=7% Similarity=0.154 Sum_probs=21.4
Q ss_pred cccccCCCEEEEeeccCCCeeeeEEEEE
Q 041704 2 SMSVRKDDEVQVVGGTYKGREGKFVQIF 29 (86)
Q Consensus 2 Sm~IrKgDeV~VI~Gk~KGk~GKV~~V~ 29 (86)
-|+++.||+|.+.-|.-.=-.++|..+.
T Consensus 31 VLR~~~Gd~v~l~dg~g~~~~a~I~~i~ 58 (251)
T 4e8b_A 31 VLRMGPGQALQLFDGSNQVFDAEITSAS 58 (251)
T ss_dssp TSCCCSCCEEEEECSSSEEEEEEEEEEC
T ss_pred hCcCCCCCEEEEEeCCCcEEEEEEEEee
Confidence 3788999999999886322348888887
No 108
>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=39.78 E-value=29 Score=19.95 Aligned_cols=15 Identities=13% Similarity=0.403 Sum_probs=12.2
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 32 Ls~~~Gd~i~v~~~~ 46 (80)
T 2v1r_A 32 VALKKGDLMAILSKK 46 (80)
T ss_dssp CCBCTTCEEEEEEEE
T ss_pred ecCCCCCEEEEEECC
Confidence 578999999998754
No 109
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=39.47 E-value=43 Score=24.48 Aligned_cols=28 Identities=7% Similarity=0.074 Sum_probs=21.3
Q ss_pred cccccCCCEEEEeeccCCCeeeeEEEEE
Q 041704 2 SMSVRKDDEVQVVGGTYKGREGKFVQIF 29 (86)
Q Consensus 2 Sm~IrKgDeV~VI~Gk~KGk~GKV~~V~ 29 (86)
-|+++.||+|.+.-|.-.--.++|..+.
T Consensus 34 VLRl~~Gd~i~l~dg~G~~~~a~I~~~~ 61 (268)
T 1vhk_A 34 VMRMNEGDQIICCSQDGFEAKCELQSVS 61 (268)
T ss_dssp TTCCCTTCEEEEECTTSCEEEEEEEEEC
T ss_pred hhcCCCCCEEEEEeCCCCEEEEEEEEec
Confidence 4789999999999886333347888877
No 110
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=39.46 E-value=35 Score=24.78 Aligned_cols=35 Identities=11% Similarity=0.304 Sum_probs=25.2
Q ss_pred cccccCCCEEEEeeccCCCee--eeEEEEEeccccCcccceEEEe
Q 041704 2 SMSVRKDDEVQVVGGTYKGRE--GKFVQIFAIFSGVKRDLVVSYE 44 (86)
Q Consensus 2 Sm~IrKgDeV~VI~Gk~KGk~--GKV~~V~~~~~~~rkk~~V~VE 44 (86)
-++++.||+|.+.-|. |.. ++|..+. ++...+.+.
T Consensus 33 VLRl~~Gd~v~l~dg~--g~~~~a~I~~~~------~~~~~~~i~ 69 (257)
T 1vhy_A 33 VLRMTEGEQLELFDGS--NHIYPAKIIESN------KKSVKVEIL 69 (257)
T ss_dssp TSCCCTTCEEEEECSS--SEEEEEEEEEEC------SSCEEEEEC
T ss_pred HhccCCCCEEEEEcCC--CCEEEEEEEEee------CCeEEEEEE
Confidence 3788999999998885 544 7888887 555444443
No 111
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.45 E-value=31 Score=19.99 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=12.0
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 34 Lsf~~Gd~i~v~~~~ 48 (80)
T 2d8h_A 34 LNFQAGDRITVISKT 48 (80)
T ss_dssp CEECTTCEEEEEECC
T ss_pred eeEcCCCEEEEeECc
Confidence 568899999998754
No 112
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=39.33 E-value=20 Score=20.16 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=11.7
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 24 Lsf~~Gd~i~v~~~ 37 (68)
T 1tg0_A 24 LNFEKDQEIIVTSV 37 (68)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred CCCCCCCEEEEEEe
Confidence 57899999999873
No 113
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}
Probab=38.70 E-value=31 Score=20.03 Aligned_cols=16 Identities=13% Similarity=0.015 Sum_probs=12.4
Q ss_pred ccccCCCEEEEeeccC
Q 041704 3 MSVRKDDEVQVVGGTY 18 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~ 18 (86)
+.+++||.+.|+.-..
T Consensus 22 Ls~~~Gd~i~v~~~~~ 37 (73)
T 2lcs_A 22 LRLAEGDIVFISYKHG 37 (73)
T ss_dssp CCBCTTCEEEEEEEET
T ss_pred cCCcCCCEEEEEEEcC
Confidence 5789999999987443
No 114
>1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima}
Probab=38.24 E-value=36 Score=24.63 Aligned_cols=36 Identities=8% Similarity=0.110 Sum_probs=24.7
Q ss_pred ccccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEe
Q 041704 3 MSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYE 44 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VE 44 (86)
|+++.||+|.+.-|.-.--.++|..+. ++...+.+.
T Consensus 39 LRl~~Gd~v~l~dg~G~~~~a~I~~~~------~~~~~~~i~ 74 (234)
T 1z85_A 39 VRLKEGDVIEATDGNGFSYTCILKSLK------KKTAAAKIV 74 (234)
T ss_dssp TTCCTTCEEEEECSBSEEEEEEEEEEC------SSCEEEEEE
T ss_pred hcCCCCCEEEEEeCCCCEEEEEEEEec------CCEEEEEEE
Confidence 688999999998876332337888877 554444443
No 115
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=38.07 E-value=72 Score=20.96 Aligned_cols=27 Identities=15% Similarity=0.135 Sum_probs=18.6
Q ss_pred ccccCCCEEEEeeccCCC-eeeeEEEEE
Q 041704 3 MSVRKDDEVQVVGGTYKG-REGKFVQIF 29 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~KG-k~GKV~~V~ 29 (86)
-.++.||.|.+..|.... +.-+|+.|.
T Consensus 90 ~~l~~GD~v~~~~~~~~~~~~~~V~~v~ 117 (145)
T 1at0_A 90 DRIEEKNQVLVRDVETGELRPQRVVKVG 117 (145)
T ss_dssp GGCCTTCEEEEECTTTCCEEEEEEEEEE
T ss_pred HHCcCCCEEEEecCCCCCEEEEEEEEEE
Confidence 368999999999873221 336677665
No 116
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=37.95 E-value=40 Score=24.63 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=21.0
Q ss_pred cccccCCCEEEEeeccCCCee--eeEEEEE
Q 041704 2 SMSVRKDDEVQVVGGTYKGRE--GKFVQIF 29 (86)
Q Consensus 2 Sm~IrKgDeV~VI~Gk~KGk~--GKV~~V~ 29 (86)
-++++.||+|.+.-|. |.. ++|..+.
T Consensus 30 VLRl~~Gd~v~l~dg~--g~~~~a~I~~i~ 57 (257)
T 3kw2_A 30 VLRMQAGDRLRLTDGR--GSFFDAVIETAD 57 (257)
T ss_dssp TSCCCTTCEEEEECSB--SEEEEEEEEEEC
T ss_pred hccCCCCCEEEEEECC--CCEEEEEEEEee
Confidence 3688999999999887 544 7788877
No 117
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A
Probab=37.87 E-value=24 Score=20.41 Aligned_cols=14 Identities=7% Similarity=0.489 Sum_probs=11.5
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 21 Lsf~~Gd~i~vl~~ 34 (67)
T 2b86_A 21 LDIKKNERLWLLDD 34 (67)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred cccCCCCEEEEEec
Confidence 57899999999873
No 118
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1
Probab=37.40 E-value=32 Score=19.15 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=11.8
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+..
T Consensus 25 Lsf~~Gd~i~v~~~ 38 (67)
T 3rnj_A 25 LSFKEGDLITLLVP 38 (67)
T ss_dssp CCBCTTCEEEECSS
T ss_pred ccCCCCCEEEEeec
Confidence 67899999999854
No 119
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=37.16 E-value=16 Score=20.56 Aligned_cols=13 Identities=31% Similarity=0.670 Sum_probs=10.4
Q ss_pred ccccCCCEEEEee
Q 041704 3 MSVRKDDEVQVVG 15 (86)
Q Consensus 3 m~IrKgDeV~VI~ 15 (86)
+.+++||.+.|+.
T Consensus 24 Ls~~~Gd~i~v~~ 36 (68)
T 1wi7_A 24 LELKVGDIIEVVG 36 (68)
T ss_dssp CCBCTTCEECCCE
T ss_pred ccCcCCCEEEEEE
Confidence 5678999988875
No 120
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.08 E-value=21 Score=20.80 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=10.9
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 34 Ls~~~Gd~i~v~~~ 47 (79)
T 1x6b_A 34 VTLQQADVVLVLQQ 47 (79)
T ss_dssp CCCCTTEEEEEEEE
T ss_pred cCCCCCCEEEEEEe
Confidence 56788998888763
No 121
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=36.03 E-value=17 Score=26.49 Aligned_cols=29 Identities=14% Similarity=0.280 Sum_probs=22.3
Q ss_pred ccccCCCEEEEeeccCCCeeeeEEEEEeccccCc
Q 041704 3 MSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVK 36 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~r 36 (86)
-|+|.||.|++ .|.+|.|..+..-.|.++
T Consensus 128 ~pf~vGD~I~i-----~g~~G~V~~I~l~~T~i~ 156 (286)
T 2vv5_A 128 RPFRAGEYVDL-----GGVAGTVLSVQIFSTTMR 156 (286)
T ss_dssp CSSCTTCEEES-----SSCEEEEEEECSSEEEEE
T ss_pred CCccCCCEEEE-----CCEEEEEEEEEeEEEEEE
Confidence 38899999987 378899999985444444
No 122
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Probab=35.99 E-value=38 Score=18.85 Aligned_cols=14 Identities=21% Similarity=0.646 Sum_probs=11.6
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 24 Ls~~~Gd~i~v~~~ 37 (70)
T 2cuc_A 24 LDLQKGEGIRVLGK 37 (70)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred CCCCCCCEEEEEEe
Confidence 57899999999864
No 123
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=35.97 E-value=35 Score=20.81 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=11.7
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 46 Lsf~~GD~I~Vl~~ 59 (89)
T 2rf0_A 46 LTLRRGDRVQVLSQ 59 (89)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred cccCCCCEEEEEec
Confidence 57899999999875
No 124
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=35.73 E-value=31 Score=18.69 Aligned_cols=16 Identities=0% Similarity=0.098 Sum_probs=12.8
Q ss_pred ccccCCCEEEEeeccC
Q 041704 3 MSVRKDDEVQVVGGTY 18 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~ 18 (86)
+.+++||.+.|+.-..
T Consensus 18 Ls~~~Gd~i~v~~~~~ 33 (58)
T 2bz8_A 18 LTISVGEIITNIRKED 33 (58)
T ss_dssp CCBCTTCEEEEEECCT
T ss_pred eeECCCCEEEEEEeCC
Confidence 5789999999987543
No 125
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=35.68 E-value=24 Score=21.26 Aligned_cols=14 Identities=36% Similarity=0.323 Sum_probs=11.5
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 22 Lsf~~Gd~i~v~~~ 35 (93)
T 1uff_A 22 MSFNSGDIIQVDEK 35 (93)
T ss_dssp CCBCTTCEEEECSS
T ss_pred cCCCCCCEEEEeEc
Confidence 57899999999863
No 126
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A
Probab=35.62 E-value=36 Score=20.21 Aligned_cols=15 Identities=13% Similarity=0.403 Sum_probs=12.1
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 32 Lsf~~Gd~i~v~~~~ 46 (92)
T 1jqq_A 32 VALKKGDLMAILSKK 46 (92)
T ss_dssp CCBCTTCEEEEEEEE
T ss_pred cCCCCCCEEEEEECC
Confidence 578899999998754
No 127
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.55 E-value=27 Score=20.81 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=11.4
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 34 Lsf~~Gd~i~v~~~ 47 (90)
T 2yup_A 34 LSFRKGEHICLIRK 47 (90)
T ss_dssp CCCCTTCEEEESSC
T ss_pred CCCCCCCEEEEEEE
Confidence 56889999999863
No 128
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=35.46 E-value=40 Score=19.93 Aligned_cols=14 Identities=14% Similarity=0.430 Sum_probs=11.5
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 34 Ls~~~Gd~i~v~~~ 47 (91)
T 1wx6_A 34 LNFEKGETMEVIEK 47 (91)
T ss_dssp CCCCTTCEEEEEEC
T ss_pred ccCCCCCEEEEEEC
Confidence 56889999999875
No 129
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A
Probab=35.41 E-value=44 Score=19.47 Aligned_cols=13 Identities=15% Similarity=0.189 Sum_probs=11.3
Q ss_pred ccccCCCEEEEee
Q 041704 3 MSVRKDDEVQVVG 15 (86)
Q Consensus 3 m~IrKgDeV~VI~ 15 (86)
+.+++||.+.|+.
T Consensus 22 Ls~~~Gd~I~V~~ 34 (83)
T 3i5r_A 22 IDLHLGDILTVNK 34 (83)
T ss_dssp CCBCTTCEEEEEH
T ss_pred cccCCCCEEEEee
Confidence 5789999999994
No 130
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A
Probab=35.34 E-value=22 Score=20.54 Aligned_cols=13 Identities=15% Similarity=0.394 Sum_probs=11.1
Q ss_pred ccccCCCEEEEee
Q 041704 3 MSVRKDDEVQVVG 15 (86)
Q Consensus 3 m~IrKgDeV~VI~ 15 (86)
+.+++||.+.|+.
T Consensus 27 Lsf~~Gd~i~v~~ 39 (76)
T 2ed1_A 27 LTFIEGEVIIVTG 39 (76)
T ss_dssp CCCCSSCEEEESS
T ss_pred cCcCCCCEEEEEE
Confidence 5789999999986
No 131
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=34.75 E-value=37 Score=19.91 Aligned_cols=15 Identities=13% Similarity=0.403 Sum_probs=12.2
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.=.
T Consensus 25 Lsf~~Gd~i~Vl~~~ 39 (69)
T 1nm7_A 25 VALKKGDLMAILSKK 39 (69)
T ss_dssp CCCCTTCEEEECCSS
T ss_pred cCCCCCCEEEEEecC
Confidence 678999999998743
No 132
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_G
Probab=34.41 E-value=43 Score=25.04 Aligned_cols=35 Identities=11% Similarity=0.254 Sum_probs=27.7
Q ss_pred ccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEece
Q 041704 5 VRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYEPI 46 (86)
Q Consensus 5 IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VEgV 46 (86)
|..|..+++++|.++|+..-+++.. . .+.+.|.|-
T Consensus 75 i~pGtVlIil~Gr~~GKrvVfLkqL------~-sgllLVtGP 109 (219)
T 3iz5_G 75 ITPGTVLILLAGRYMGKRVVFLKQL------Q-SGLLLITGP 109 (219)
T ss_dssp CSCCSCEECSSSSSSCCEECEEEES------S-SSSEEECCC
T ss_pred ccCCCEEEEeccccCCcEEEEEEec------C-CCeEEEcCC
Confidence 5679899999999999998888776 3 566776654
No 133
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}
Probab=34.36 E-value=24 Score=19.70 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=11.7
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 24 Ls~~~Gd~i~v~~~ 37 (67)
T 2kxc_A 24 LSFAQGDVITLLIP 37 (67)
T ss_dssp CCBCTTCEEEESSS
T ss_pred CcCCCCCEEEEeEC
Confidence 67899999999863
No 134
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=34.08 E-value=27 Score=21.12 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=10.5
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 51 Ls~~~Gd~i~v~~~ 64 (98)
T 1udl_A 51 LSFSKGQLINVMNK 64 (98)
T ss_dssp CCCCTTCEEEECBC
T ss_pred cCCcCCCEEEEEEe
Confidence 56788888888763
No 135
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=33.92 E-value=31 Score=20.03 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=13.9
Q ss_pred ccccCCCEEEEeeccCCC
Q 041704 3 MSVRKDDEVQVVGGTYKG 20 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~KG 20 (86)
+.+++||.+.|+.-.+.|
T Consensus 23 Ls~~~Gd~i~v~~~~~~g 40 (65)
T 2lj0_A 23 LELRDGDIVDVMEKCDDG 40 (65)
T ss_dssp CCBCTTCEEEEEEECTTS
T ss_pred cCCCCCCEEEEeEeCCCC
Confidence 678999999998754443
No 136
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=33.14 E-value=34 Score=18.48 Aligned_cols=15 Identities=7% Similarity=0.175 Sum_probs=12.3
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 17 Ls~~~Gd~i~v~~~~ 31 (58)
T 1jo8_A 17 LTFVENDKIINIEFV 31 (58)
T ss_dssp CCBCTTCEEEEEECC
T ss_pred cccCCCCEEEEEEec
Confidence 678999999998743
No 137
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=33.10 E-value=35 Score=18.33 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=12.1
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 18 Ls~~~Gd~i~v~~~~ 32 (57)
T 1cka_A 18 LPFKKGDILRIRDKP 32 (57)
T ss_dssp CCBCTTCEEEEEECS
T ss_pred CCCCCCCEEEEEEec
Confidence 578999999998743
No 138
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}
Probab=33.01 E-value=31 Score=22.14 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=11.3
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 76 Lsf~~Gd~i~vl~~ 89 (119)
T 2rqr_A 76 LSLQIGDVVRIQET 89 (119)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred ccCcCCCEEEEEEc
Confidence 56789999999873
No 139
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A
Probab=32.88 E-value=34 Score=19.59 Aligned_cols=15 Identities=20% Similarity=0.459 Sum_probs=12.0
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 26 Ls~~~Gd~i~v~~~~ 40 (74)
T 1gbq_A 26 LSFKRGDILKVLNEE 40 (74)
T ss_dssp CCBCTTCEEECCBCS
T ss_pred eeEcCCCEEEEeEec
Confidence 678999999998743
No 140
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=32.30 E-value=28 Score=18.75 Aligned_cols=14 Identities=14% Similarity=0.548 Sum_probs=12.0
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 19 Ls~~~Gd~i~v~~~ 32 (60)
T 2v1q_A 19 LTIKSGDKVYILDD 32 (60)
T ss_dssp CCBCTTCEEEEEES
T ss_pred ccCCCCCEEEEEeC
Confidence 67899999999874
No 141
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=32.08 E-value=38 Score=18.16 Aligned_cols=15 Identities=13% Similarity=0.302 Sum_probs=12.1
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 20 Ls~~~Gd~i~v~~~~ 34 (58)
T 2drm_A 20 LTFKEGDTIIVHQKD 34 (58)
T ss_dssp CCBCTTCEEEEEECC
T ss_pred cCCCCCCEEEEEEec
Confidence 678999999998743
No 142
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A
Probab=30.71 E-value=39 Score=18.42 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=12.3
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 20 Ls~~~Gd~i~v~~~~ 34 (61)
T 1y0m_A 20 LTFTKSAIIQNVEKQ 34 (61)
T ss_dssp CCBCTTCEEEEEECC
T ss_pred cCCcCCCEEEEEEec
Confidence 678999999998753
No 143
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}
Probab=30.65 E-value=17 Score=22.37 Aligned_cols=14 Identities=29% Similarity=0.603 Sum_probs=11.0
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 35 Lsf~~Gd~i~V~~~ 48 (92)
T 2o2o_A 35 LELKVGDIIEVVGE 48 (92)
T ss_dssp CCBCSSCEEECCCG
T ss_pred ccccCCCEEEEeEe
Confidence 57889999888763
No 144
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Probab=29.96 E-value=41 Score=18.30 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=13.0
Q ss_pred ccccCCCEEEEeeccC
Q 041704 3 MSVRKDDEVQVVGGTY 18 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~ 18 (86)
+.+++||.+.|+.-..
T Consensus 18 Ls~~~Gd~i~v~~~~~ 33 (65)
T 2oaw_A 18 VTMKKGDILTLLNSTN 33 (65)
T ss_dssp CCBCTTCEEEEEECCS
T ss_pred CCCCCCCEEEEEEcCC
Confidence 6789999999998543
No 145
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.34 E-value=48 Score=19.16 Aligned_cols=15 Identities=7% Similarity=0.410 Sum_probs=11.7
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 30 Ls~~~Gd~i~v~~~~ 44 (78)
T 2dl5_A 30 LTIEEHEVLEVIEDG 44 (78)
T ss_dssp CCBCSSEEEEEEECC
T ss_pred CCCCCCCEEEEEecc
Confidence 567889988888754
No 146
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A
Probab=29.25 E-value=43 Score=18.55 Aligned_cols=15 Identities=27% Similarity=0.147 Sum_probs=12.2
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 23 Ls~~~Gd~i~v~~~~ 37 (65)
T 2j05_A 23 ISFLKGDMFIVHNEL 37 (65)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred CcCCCCCEEEEeEec
Confidence 578999999998753
No 147
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Probab=29.16 E-value=43 Score=18.68 Aligned_cols=15 Identities=7% Similarity=0.282 Sum_probs=12.4
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 19 Ls~~~Gd~i~v~~~~ 33 (67)
T 1gl5_A 19 LRLERGQEYIILEKN 33 (67)
T ss_dssp CCBCTTCEEEEEECS
T ss_pred ecCCcCCEEEEEEcc
Confidence 578999999998754
No 148
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=29.13 E-value=44 Score=18.27 Aligned_cols=15 Identities=20% Similarity=0.209 Sum_probs=11.9
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 20 Ls~~~Gd~i~v~~~~ 34 (62)
T 2fpe_A 20 LELEVDDPLLVELQA 34 (62)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred CcCCCCCEEEEEEec
Confidence 578999999998643
No 149
>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}
Probab=29.05 E-value=43 Score=18.59 Aligned_cols=18 Identities=11% Similarity=0.374 Sum_probs=13.6
Q ss_pred ccccCCCEEEEeeccCCC
Q 041704 3 MSVRKDDEVQVVGGTYKG 20 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~KG 20 (86)
+.+++||.+.|+.-...|
T Consensus 30 Ls~~~Gd~i~v~~~~~~~ 47 (72)
T 4glm_A 30 LDFEVGDKIRILATLEDG 47 (72)
T ss_dssp CCBCTTCEEEEEEECSTT
T ss_pred CCCCCCCEEEEEEccCCC
Confidence 578999999998754433
No 150
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Probab=28.77 E-value=49 Score=23.53 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=19.3
Q ss_pred ccccCCCEEEEeeccCCCee--eeEEEEE
Q 041704 3 MSVRKDDEVQVVGGTYKGRE--GKFVQIF 29 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~KGk~--GKV~~V~ 29 (86)
|+++.||+|.+ -|. |.. ++|..+.
T Consensus 27 lRl~~Gd~v~l-dg~--g~~~~a~i~~~~ 52 (229)
T 2egv_A 27 RRIEKDEEFGV-IHE--GKIYVCKVRRED 52 (229)
T ss_dssp TTCCTTCCEEE-EET--TEEEEEEEEEEC
T ss_pred hcCCCCCEEEE-eCC--CCEEEEEEEEec
Confidence 68899999999 775 554 7888877
No 151
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=28.64 E-value=27 Score=24.89 Aligned_cols=16 Identities=6% Similarity=0.111 Sum_probs=11.8
Q ss_pred cccccCCCEEEEeecc
Q 041704 2 SMSVRKDDEVQVVGGT 17 (86)
Q Consensus 2 Sm~IrKgDeV~VI~Gk 17 (86)
+.+++.||.|++..++
T Consensus 7 ~~~~~~Gd~V~~~~~~ 22 (336)
T 2b25_A 7 ERPFQAGELILAETGE 22 (336)
T ss_dssp -CCCCTTCEEEEEC--
T ss_pred CCCCCCCCEEEEEeCC
Confidence 4689999999998764
No 152
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=28.57 E-value=32 Score=18.47 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=11.6
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 18 Ls~~~Gd~i~v~~~ 31 (59)
T 1yn8_A 18 LRLAEGDIVFISYK 31 (59)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred cCCCCCCEEEEEEc
Confidence 67899999999864
No 153
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A
Probab=27.91 E-value=49 Score=17.56 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=13.1
Q ss_pred ccccCCCEEEEeeccCC
Q 041704 3 MSVRKDDEVQVVGGTYK 19 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~K 19 (86)
+.+++||.+.|+.-...
T Consensus 18 Ls~~~Gd~i~v~~~~~~ 34 (58)
T 4e6r_A 18 LSLVXGSRVTVMEXCSD 34 (58)
T ss_dssp CCBCTTCEEEEEEECTT
T ss_pred eeEeCCCEEEEeEcCCC
Confidence 67899999999865433
No 154
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}
Probab=27.89 E-value=46 Score=18.74 Aligned_cols=15 Identities=20% Similarity=0.209 Sum_probs=12.0
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 23 Ls~~~Gd~i~v~~~~ 37 (71)
T 2fpf_A 23 LELEVDDPLLVELQA 37 (71)
T ss_dssp CCBCTTCEEEEEEEC
T ss_pred ccCcCCcEEEEeEec
Confidence 578999999998643
No 155
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A
Probab=27.06 E-value=1e+02 Score=18.38 Aligned_cols=13 Identities=15% Similarity=0.171 Sum_probs=11.1
Q ss_pred ccccCCCEEEEee
Q 041704 3 MSVRKDDEVQVVG 15 (86)
Q Consensus 3 m~IrKgDeV~VI~ 15 (86)
+.+++||.+.|+.
T Consensus 28 Lsf~~GD~I~V~~ 40 (90)
T 3o5z_A 28 LELLPGDVLVVSR 40 (90)
T ss_dssp CCBCTTCEEEEEH
T ss_pred cCCcCCCEEEEEe
Confidence 5789999999984
No 156
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}
Probab=27.01 E-value=48 Score=18.43 Aligned_cols=16 Identities=13% Similarity=0.277 Sum_probs=12.7
Q ss_pred ccccCCCEEEEeeccC
Q 041704 3 MSVRKDDEVQVVGGTY 18 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~ 18 (86)
+.+++||.+.|+.-..
T Consensus 23 Ls~~~Gd~i~v~~~~~ 38 (69)
T 4esr_A 23 LTIHRGDIIRVFFKDN 38 (69)
T ss_dssp CCBCTTCEEEEEEECS
T ss_pred CCCCCCCEEEEEEecC
Confidence 6789999999986543
No 157
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=26.95 E-value=45 Score=19.15 Aligned_cols=17 Identities=6% Similarity=0.134 Sum_probs=13.3
Q ss_pred ccccCCCEEEEeeccCC
Q 041704 3 MSVRKDDEVQVVGGTYK 19 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~K 19 (86)
+.+++||.|.|+.-...
T Consensus 24 Ls~~~Gd~i~v~~~~~~ 40 (80)
T 1ue9_A 24 LSLAPGQLILILKKNTS 40 (80)
T ss_dssp CCCCTTCEEEEEEECSS
T ss_pred CCCCCCCEEEEEEecCC
Confidence 57899999999886443
No 158
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A
Probab=26.67 E-value=51 Score=17.97 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=12.3
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 26 Ls~~~Gd~i~v~~~~ 40 (65)
T 3ulr_B 26 ISFDPDDIITNIEMI 40 (65)
T ss_dssp CCBCTTCEEEEEECC
T ss_pred eeEecCCEEEEEEec
Confidence 678999999998654
No 159
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}
Probab=26.65 E-value=46 Score=21.97 Aligned_cols=14 Identities=14% Similarity=0.515 Sum_probs=11.8
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 22 Lsf~~Gd~i~Vl~~ 35 (142)
T 2kbt_A 22 LSLKEGDIIKILNK 35 (142)
T ss_dssp CCCCTTCEEEEEEC
T ss_pred CCCCCCCEEEEEEe
Confidence 67899999999863
No 160
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}
Probab=26.41 E-value=52 Score=18.32 Aligned_cols=14 Identities=14% Similarity=0.548 Sum_probs=11.9
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.|.|+.-
T Consensus 23 Ls~~~Gd~i~v~~~ 36 (71)
T 2jt4_A 23 LTIKSGDKVYILDD 36 (71)
T ss_dssp CCBCTTCEEEEEES
T ss_pred ccCCCCCEEEEEEC
Confidence 57899999999874
No 161
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}
Probab=26.15 E-value=48 Score=19.62 Aligned_cols=13 Identities=8% Similarity=0.524 Sum_probs=10.0
Q ss_pred ccccCCCEEEEee
Q 041704 3 MSVRKDDEVQVVG 15 (86)
Q Consensus 3 m~IrKgDeV~VI~ 15 (86)
+.+++||.+.|+.
T Consensus 48 Ls~~~Gd~i~v~~ 60 (86)
T 2jxb_A 48 LDIKKNERLWLLD 60 (86)
T ss_dssp CCCCTTEEEEEEE
T ss_pred eccCCCCEEEEEe
Confidence 5678888888876
No 162
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural protein; 1.75A {Gallus gallus}
Probab=26.08 E-value=50 Score=19.16 Aligned_cols=15 Identities=20% Similarity=0.477 Sum_probs=12.4
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 19 Ls~~~Gd~i~v~~~~ 33 (80)
T 2pqh_A 19 VTMKKGDILTLLNST 33 (80)
T ss_dssp CCBCTTCEEEEEECC
T ss_pred cCCCCCCEEEEEEec
Confidence 678999999998753
No 163
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=25.89 E-value=86 Score=22.23 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=20.2
Q ss_pred cccccCCCEEEEeeccCCCeeeeEEEEE
Q 041704 2 SMSVRKDDEVQVVGGTYKGREGKFVQIF 29 (86)
Q Consensus 2 Sm~IrKgDeV~VI~Gk~KGk~GKV~~V~ 29 (86)
-|+++.||+|.+.-|.- --.++|..+.
T Consensus 26 VlRl~~Gd~v~l~dg~g-~~~a~i~~~~ 52 (228)
T 1v6z_A 26 VLRARVGDRFTVFDGER-EALAEVVDLG 52 (228)
T ss_dssp TSCCCTTCEEEEECSSC-EEEEEEEECC
T ss_pred hccCCCCCEEEEEeCCc-EEEEEEEECC
Confidence 37889999999998863 2237777766
No 164
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.58 E-value=42 Score=18.81 Aligned_cols=14 Identities=36% Similarity=0.546 Sum_probs=11.7
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 24 Ls~~~Gd~i~v~~~ 37 (68)
T 1wxb_A 24 LSVLKDEVLEVLED 37 (68)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred cCCCCCCEEEEEEc
Confidence 57899999999863
No 165
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Probab=25.54 E-value=55 Score=17.65 Aligned_cols=16 Identities=25% Similarity=0.169 Sum_probs=12.5
Q ss_pred ccccCCCEEEEeeccC
Q 041704 3 MSVRKDDEVQVVGGTY 18 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~ 18 (86)
+.+++||.+.|+.-..
T Consensus 23 Ls~~~Gd~i~v~~~~~ 38 (64)
T 4f14_A 23 VSFRDGDYIVNVQPID 38 (64)
T ss_dssp CCBCTTCEEEEEEECS
T ss_pred CCCCCCCEEEEEEeCC
Confidence 5789999999887543
No 166
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}
Probab=25.51 E-value=43 Score=18.72 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=12.4
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 20 Ls~~~Gd~i~v~~~~ 34 (69)
T 1wyx_A 20 LSFRKGDIMTVLEQD 34 (69)
T ss_dssp CCBCTTCEEEEEETT
T ss_pred cCCcCCCEEEEeECC
Confidence 678999999998754
No 167
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*
Probab=25.43 E-value=54 Score=18.35 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=12.1
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 32 Ls~~~Gd~i~v~~~~ 46 (73)
T 3h0h_A 32 LSFHKGEKFQILNSS 46 (73)
T ss_dssp CCBCTTCEEEEEECS
T ss_pred ceEeCCCEEEEEEec
Confidence 578999999998644
No 168
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.37 E-value=53 Score=18.26 Aligned_cols=15 Identities=13% Similarity=0.368 Sum_probs=12.0
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 24 Ls~~~Gd~i~v~~~~ 38 (68)
T 1x2p_A 24 LSFLRGEKILILRQT 38 (68)
T ss_dssp CCCCTTCEEEEEECC
T ss_pred cCCCCCCEEEEEEcC
Confidence 578899999998753
No 169
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.24 E-value=61 Score=19.27 Aligned_cols=14 Identities=7% Similarity=-0.019 Sum_probs=11.4
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 33 Ls~~~Gd~i~v~~~ 46 (94)
T 2e5k_A 33 LELVPGDFIFMSPM 46 (94)
T ss_dssp CCBCTTCEEEECGG
T ss_pred cCCCCCCEEEEEEC
Confidence 56789999999865
No 170
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.12 E-value=44 Score=18.72 Aligned_cols=14 Identities=7% Similarity=0.387 Sum_probs=11.7
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 24 Ls~~~Gd~i~vl~~ 37 (70)
T 2ct4_A 24 ISMAEGEDLSLMEE 37 (70)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred CCCCCCCEEEEEec
Confidence 57899999999864
No 171
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A
Probab=25.01 E-value=54 Score=19.22 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=12.3
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 22 Ls~~~Gd~i~vl~~~ 36 (79)
T 3cqt_A 22 LSFHKGEKFQILNSS 36 (79)
T ss_dssp CCBCTTCEEEEEECT
T ss_pred CCCCCCCEEEEEEec
Confidence 678999999998643
No 172
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Probab=24.80 E-value=58 Score=17.47 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=12.6
Q ss_pred ccccCCCEEEEeeccC
Q 041704 3 MSVRKDDEVQVVGGTY 18 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~ 18 (86)
+.+++||.+.|+.-..
T Consensus 23 Ls~~~Gd~i~v~~~~~ 38 (62)
T 3ngp_A 23 LTVKKGDILTLLNSTN 38 (62)
T ss_dssp CCBCTTCEEEEEECCS
T ss_pred ccCCCCCEEEEeEecC
Confidence 6789999999987543
No 173
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}
Probab=24.78 E-value=56 Score=18.13 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=12.0
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 24 Ls~~~Gd~i~v~~~~ 38 (68)
T 2djq_A 24 LKFNKGDVILLRRQL 38 (68)
T ss_dssp CCCCTTCEEEEEECC
T ss_pred ccCCCCCEEEEEEec
Confidence 578999999998653
No 174
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}
Probab=24.74 E-value=18 Score=21.83 Aligned_cols=14 Identities=7% Similarity=0.299 Sum_probs=11.2
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 35 Lsf~~Gd~I~Vl~~ 48 (79)
T 1z9q_A 35 LNFKAGDVIFLLSR 48 (79)
T ss_dssp CCCCTTCCBCCCEE
T ss_pred ccccCCCEEEEeEe
Confidence 56789999988764
No 175
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=24.71 E-value=1.2e+02 Score=18.43 Aligned_cols=56 Identities=16% Similarity=-0.050 Sum_probs=34.0
Q ss_pred ccccCCCEEEEeeccCC-C--eeeeEEEEEeccccCcccceEEEeceecccCCCcccCCCccE
Q 041704 3 MSVRKDDEVQVVGGTYK-G--REGKFVQIFAIFSGVKRDLVVSYEPIFDPRIPLEPVGHSSVM 62 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~K-G--k~GKV~~V~~~~~~~rkk~~V~VEgVn~~K~~g~pV~~snvm 62 (86)
..+..|+.|.+..|..+ | ...+|+++.. .+=...+.|.+.|.|. +--+=|+.+.|+
T Consensus 4 ~~~~vGekV~~~~~d~k~~~~y~AkIl~i~~--~~~~~~Y~VHY~gwnk--r~DEWV~~~ri~ 62 (76)
T 2lcc_A 4 EPCLTGTKVKVKYGRGKTQKIYEASIKSTEI--DDGEVLYLVHYYGWNV--RYDEWVKADRII 62 (76)
T ss_dssp CCSSTTCEEEEEEEETTEEEEEEEEEEEEEE--ETTEEEEEEEETTSCC--SSCEEEEGGGEE
T ss_pred cccCCCCEEEEEeCCCCCCCEEEEEEEEEEc--cCCceEEEEEeCCcCC--CceEecChhhcc
Confidence 36788999999998522 2 3488988871 1111135788888764 223555555543
No 176
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.66 E-value=43 Score=18.62 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=12.4
Q ss_pred ccccCCCEEEEeeccC
Q 041704 3 MSVRKDDEVQVVGGTY 18 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~ 18 (86)
+.+++||.+.|+.-..
T Consensus 24 Ls~~~Gd~i~v~~~~~ 39 (70)
T 2ct3_A 24 LELREGDRVDVMQQCD 39 (70)
T ss_dssp CCBCTTEEEEEEEECS
T ss_pred ccCCCCCEEEEEEECC
Confidence 5788999999987543
No 177
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}
Probab=24.39 E-value=57 Score=18.50 Aligned_cols=15 Identities=20% Similarity=0.477 Sum_probs=12.4
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 16 Ls~~~Gd~i~v~~~~ 30 (73)
T 2kxd_A 16 VTMKKGDILTLLNST 30 (73)
T ss_dssp CCBCTTCEEEEEECC
T ss_pred eeEcCCCEEEEEEec
Confidence 578999999998754
No 178
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=24.19 E-value=86 Score=21.75 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=22.8
Q ss_pred cccccCCCEEEEeeccCCCeeeeEEEEE
Q 041704 2 SMSVRKDDEVQVVGGTYKGREGKFVQIF 29 (86)
Q Consensus 2 Sm~IrKgDeV~VI~Gk~KGk~GKV~~V~ 29 (86)
.+.|+.||.|.|---.|.-..|.|+.++
T Consensus 67 ~IwI~~GD~VlVe~~~yd~~KG~Ii~r~ 94 (143)
T 1d7q_A 67 KVWINTSDIILVGLRDYQDNKADVILKY 94 (143)
T ss_dssp SCCCCTTCEEEEECSSSSSSCCEEEEEE
T ss_pred eEEecCCCEEEEeeccCCCCeEEEEEEe
Confidence 4678999999998777765568999888
No 179
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A
Probab=24.15 E-value=47 Score=18.68 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=11.7
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 25 Ls~~~Gd~i~v~~~ 38 (68)
T 2k2m_A 25 LSVKQRDVLEVLDD 38 (68)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred ccCCCCCEEEEEEc
Confidence 57899999999874
No 180
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.74 E-value=43 Score=19.28 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=11.9
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 31 Lsf~~Gd~i~v~~~ 44 (76)
T 2csi_A 31 LTFCTGDIITVFGE 44 (76)
T ss_dssp CCCCTTCEEEEESS
T ss_pred ccCCCCCEEEEeEe
Confidence 57899999999874
No 181
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=23.68 E-value=29 Score=22.42 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=11.2
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+++++||+|.|-..
T Consensus 95 L~L~~GD~V~v~~~ 108 (131)
T 2wnv_C 95 LRLQVGEEVWLAVN 108 (131)
T ss_dssp EEECTTCEEEEEEE
T ss_pred EEECCCCEEEEEEe
Confidence 57899999988663
No 182
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.24 E-value=84 Score=20.69 Aligned_cols=28 Identities=7% Similarity=0.088 Sum_probs=20.3
Q ss_pred cccccCCCEEEEeeccCCCe-eeeEEEEE
Q 041704 2 SMSVRKDDEVQVVGGTYKGR-EGKFVQIF 29 (86)
Q Consensus 2 Sm~IrKgDeV~VI~Gk~KGk-~GKV~~V~ 29 (86)
.+.|+.||.|.|---.|-.. .|.|+.++
T Consensus 51 ~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~ 79 (111)
T 2dgy_A 51 NIWIKRGDFLIVDPIEEGEKVKAEISFVL 79 (111)
T ss_dssp CCCCCSSCEEEEEECSSCSSCCEEEEEEC
T ss_pred cEEEcCCCEEEEEecccCCcceEEEEEEe
Confidence 35788999998877666523 48888777
No 183
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Probab=23.20 E-value=66 Score=21.49 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=11.1
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.=
T Consensus 175 L~~~~Gd~i~v~~~ 188 (217)
T 1gri_A 175 LGFRRGDFIHVMDN 188 (217)
T ss_dssp CCCCTTCEEEEEEC
T ss_pred CCCCCCCEEEEEEe
Confidence 56789999988763
No 184
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=22.98 E-value=31 Score=22.34 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=11.3
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+++++||+|.|--.
T Consensus 96 L~L~~GD~V~l~~~ 109 (134)
T 2wnv_A 96 LQLQQGDQVWVEKD 109 (134)
T ss_dssp EEECTTCEEEEEEE
T ss_pred EEECCCCEEEEEEe
Confidence 57899999988763
No 185
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.82 E-value=51 Score=18.64 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=12.6
Q ss_pred ccccCCCEEEEeeccC
Q 041704 3 MSVRKDDEVQVVGGTY 18 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~ 18 (86)
+.+++||.+.|+.-..
T Consensus 24 Ls~~~Gd~i~v~~~~~ 39 (77)
T 2d8j_A 24 LSFRAGDKLQVLDTSH 39 (77)
T ss_dssp CCBCTTCCEEEEECCS
T ss_pred cCCCCCCEEEEEECCC
Confidence 5789999999987543
No 186
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1
Probab=22.79 E-value=66 Score=17.82 Aligned_cols=15 Identities=20% Similarity=0.477 Sum_probs=12.4
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 6 Ls~~~Gd~i~v~~~~ 20 (63)
T 1tuc_A 6 VTMKKGDILTLLNST 20 (63)
T ss_dssp CCBCTTCEEEEEECC
T ss_pred cCCCCCCEEEEEEec
Confidence 678999999998744
No 187
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=22.59 E-value=68 Score=20.91 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=21.8
Q ss_pred ccccCCCEEEEeeccCC-CeeeeEEEEE
Q 041704 3 MSVRKDDEVQVVGGTYK-GREGKFVQIF 29 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~K-Gk~GKV~~V~ 29 (86)
+.|+.||.|.|---.|. -..|.|+..+
T Consensus 57 IwI~~GD~VlVe~~~yd~~~Kg~Iv~r~ 84 (102)
T 1jt8_A 57 IWVREGDVVIVKPWEVQGDQKCDIIWRY 84 (102)
T ss_dssp HCCCSCEEEEECCBCCTTSEEEEEEEES
T ss_pred EEecCCCEEEEEeccCCCCceEEEEEEe
Confidence 46899999999877776 4558888887
No 188
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=22.27 E-value=32 Score=22.41 Aligned_cols=14 Identities=7% Similarity=0.259 Sum_probs=11.3
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+++++||+|.|--.
T Consensus 97 L~L~~GD~V~v~~~ 110 (136)
T 2wnv_B 97 LKLEQGENVFLQAT 110 (136)
T ss_dssp EEECTTCEEEEEEE
T ss_pred EEECCCCEEEEEEe
Confidence 57899999988764
No 189
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}
Probab=22.09 E-value=52 Score=18.68 Aligned_cols=14 Identities=7% Similarity=0.489 Sum_probs=11.7
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 24 Ls~~~Gd~i~v~~~ 37 (72)
T 2jw4_A 24 LDIKKNERLWLLDD 37 (72)
T ss_dssp CCCCTTCEEEEEEC
T ss_pred ccCCCCCEEEEEEC
Confidence 57899999999873
No 190
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=21.63 E-value=95 Score=20.30 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=20.6
Q ss_pred ccccCCCEEEEeeccCCCeeeeEEEEE
Q 041704 3 MSVRKDDEVQVVGGTYKGREGKFVQIF 29 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~KGk~GKV~~V~ 29 (86)
+.|..||.|.|-.=.|....|.|+.++
T Consensus 69 I~i~~GD~V~ve~~~~~~~kG~I~~~~ 95 (117)
T 2oqk_A 69 VWVNPGDIVLVSLRDFQDSKGDIILKY 95 (117)
T ss_dssp SCCCTTCEEEEEECTTCTTEEEEEEEC
T ss_pred CcCCCCCEEEEEEEcCCCCeEEEEEEe
Confidence 456789999987665555578888888
No 191
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}
Probab=21.48 E-value=54 Score=19.57 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=13.2
Q ss_pred ccccCCCEEEEeeccCC
Q 041704 3 MSVRKDDEVQVVGGTYK 19 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~K 19 (86)
+.+++||.+.|+.-...
T Consensus 36 Lsf~~GDiI~V~~~~~~ 52 (83)
T 2ke9_A 36 LNVRAGDVITVLEQHPD 52 (83)
T ss_dssp CCBCTTCEEEESCSSCS
T ss_pred ccccCCCEEEEEEecCC
Confidence 57899999999875443
No 192
>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A
Probab=21.32 E-value=53 Score=17.77 Aligned_cols=14 Identities=7% Similarity=0.268 Sum_probs=11.5
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 24 Ls~~~Gd~i~v~~~ 37 (65)
T 3u23_A 24 LELKVGDIIDINEE 37 (65)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred cCCCCCCEEEEEEe
Confidence 57899999998864
No 193
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=21.13 E-value=81 Score=23.10 Aligned_cols=58 Identities=17% Similarity=0.054 Sum_probs=38.4
Q ss_pred cccCCCEEEEee----------ccCCCeeeeEEEEEeccccCcccceEEEeceecccCCCcccCCCccEEEeeccCCcee
Q 041704 4 SVRKDDEVQVVG----------GTYKGREGKFVQIFAIFSGVKRDLVVSYEPIFDPRIPLEPVGHSSVMSSVGRMSPEVS 73 (86)
Q Consensus 4 ~IrKgDeV~VI~----------Gk~KGk~GKV~~V~~~~~~~rkk~~V~VEgVn~~K~~g~pV~~snvmi~~~~~~~~~~ 73 (86)
+.+.||.|.|-. |-.+|++|.|..+. + .++-+ ...++|..-.+--++...|.+.+=|-
T Consensus 130 ~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~---------g-~~~~p--d~~a~g~~~~p~~lY~V~F~~~eLWg 197 (219)
T 3qyh_B 130 RFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDH---------G-VFVTP--DTAAHGKGEHPQHVYTVSFTSVELWG 197 (219)
T ss_dssp CCCTTCEEEECCCCCSSCCCSCGGGTTCEEEEEEEE---------E-EECCH--HHHTTTSCCCCEEEEEEEEEHHHHHT
T ss_pred CCCCCCEEEECCCCCCCcccccHHHCCCeeEEEEEe---------c-CccCc--cccccCCCCCCceeEEEEecchhccC
Confidence 567899999953 45789999998876 1 22222 34566665456667777777766554
No 194
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=21.12 E-value=1.5e+02 Score=21.21 Aligned_cols=48 Identities=23% Similarity=0.149 Sum_probs=33.1
Q ss_pred ccccCCCEEEEeeccCCCeeeeEEEEEeccccCcccceEEEeceecccCCCcccCC
Q 041704 3 MSVRKDDEVQVVGGTYKGREGKFVQIFAIFSGVKRDLVVSYEPIFDPRIPLEPVGH 58 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk~KGk~GKV~~V~~~~~~~rkk~~V~VEgVn~~K~~g~pV~~ 58 (86)
.||.+||.+.|-.+ .+-.+=+|+.+. +. ..++|..=+.....++|+..
T Consensus 147 rPV~~GD~i~v~~~-~~~v~f~Vv~t~------P~-g~viV~~~T~I~~~~~pv~~ 194 (211)
T 3qwz_A 147 RPIRKGDIFLVRGG-MRAVEFXVVETD------PS-PYCIVAPDTVIHCEGEPIKR 194 (211)
T ss_dssp EEEETTCEEECCCT-TSCCEEEEEEEE------SS-SEEEECTTCEEECCSCCBCC
T ss_pred ceeecCCEEEEccC-CcEEEEEEEeec------CC-CCEEECCCcEEEEcCccccc
Confidence 58999999987633 233446788888 75 56777666666667777764
No 195
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.07 E-value=57 Score=19.07 Aligned_cols=14 Identities=29% Similarity=0.544 Sum_probs=11.9
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 34 Lsf~~Gd~i~v~~~ 47 (81)
T 1x6g_A 34 LAFRKGDVVTILEA 47 (81)
T ss_dssp CCBCTTCEEEEEEC
T ss_pred CCCCCCCEEEEEec
Confidence 57899999999874
No 196
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A
Probab=21.05 E-value=74 Score=17.57 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=11.7
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 23 Ls~~~Gd~i~v~~~ 36 (67)
T 2o9s_A 23 MSFRKGERITLLRQ 36 (67)
T ss_dssp CCBCTTCEEEEEEE
T ss_pred cCCCCCCEEEEEEe
Confidence 57899999999874
No 197
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1
Probab=21.03 E-value=48 Score=18.65 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=11.7
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 25 Ls~~~Gd~i~v~~~ 38 (72)
T 1spk_A 25 LSFAQGDVLTLLIP 38 (72)
T ss_dssp CCBCTTCEEEECCS
T ss_pred CcCCCCCEEEEeEc
Confidence 67899999999853
No 198
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Probab=20.97 E-value=44 Score=18.55 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=11.3
Q ss_pred ccccCCCEEEEeec
Q 041704 3 MSVRKDDEVQVVGG 16 (86)
Q Consensus 3 m~IrKgDeV~VI~G 16 (86)
+.+++||.+.|+.-
T Consensus 25 Ls~~~Gd~i~v~~~ 38 (67)
T 1aww_A 25 LQLRKGDEYFILEE 38 (67)
T ss_dssp CCCCSSCEEECCCC
T ss_pred ccCCCCCEEEEEEc
Confidence 57889999998864
No 199
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.64 E-value=63 Score=18.03 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=12.0
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 25 Ls~~~Gd~i~v~~~~ 39 (71)
T 2dnu_A 25 IGFEKGVTVEVIRKN 39 (71)
T ss_dssp CCBCTTCEEEECCCC
T ss_pred CcCCCCCEEEEeECC
Confidence 578999999998643
No 200
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.41 E-value=58 Score=18.93 Aligned_cols=13 Identities=15% Similarity=0.450 Sum_probs=11.5
Q ss_pred ccccCCCEEEEee
Q 041704 3 MSVRKDDEVQVVG 15 (86)
Q Consensus 3 m~IrKgDeV~VI~ 15 (86)
+.+++||.+.|+.
T Consensus 34 Ls~~~Gd~i~v~~ 46 (79)
T 2cud_A 34 PIFRRGEKLRVIS 46 (79)
T ss_dssp CSSCTTCEEEEEE
T ss_pred CCCCCCCEEEEEe
Confidence 5789999999997
No 201
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.30 E-value=63 Score=17.96 Aligned_cols=15 Identities=7% Similarity=0.295 Sum_probs=12.0
Q ss_pred ccccCCCEEEEeecc
Q 041704 3 MSVRKDDEVQVVGGT 17 (86)
Q Consensus 3 m~IrKgDeV~VI~Gk 17 (86)
+.+++||.+.|+.-.
T Consensus 24 Ls~~~Gd~i~v~~~~ 38 (71)
T 2cre_A 24 LAFSRGDILTILEQH 38 (71)
T ss_dssp CCCCSSCCEEEEESC
T ss_pred CCCCCCCEEEEeEcC
Confidence 567899999998753
No 202
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=20.26 E-value=1.5e+02 Score=19.29 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=23.8
Q ss_pred ccCCCEEEEee------c----cCCCeeeeEEEEEeccccCcccceEEEe
Q 041704 5 VRKDDEVQVVG------G----TYKGREGKFVQIFAIFSGVKRDLVVSYE 44 (86)
Q Consensus 5 IrKgDeV~VI~------G----k~KGk~GKV~~V~~~~~~~rkk~~V~VE 44 (86)
-++||.|-+.. | .|-|++|.|..+. .....|.|.
T Consensus 34 yk~Gd~VdIk~~~svqKGmPhk~yHGkTG~V~~v~------~~AvgV~Vn 77 (96)
T 1vq8_Q 34 FDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQ------GDAYKVDIV 77 (96)
T ss_dssp CCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEE------TTEEEEEEE
T ss_pred cCCCCEEEEEecCCccCCCCcccCCCCCeEEEeEC------CCEEEEEEe
Confidence 47899887653 3 3789999999887 555545443
No 203
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=20.25 E-value=95 Score=21.27 Aligned_cols=59 Identities=12% Similarity=-0.002 Sum_probs=38.8
Q ss_pred cccCCCEEEEee----------ccCCCeeeeEEEEEeccccCcccceEEEeceecccCCCcccCCCccEEEeeccCCcee
Q 041704 4 SVRKDDEVQVVG----------GTYKGREGKFVQIFAIFSGVKRDLVVSYEPIFDPRIPLEPVGHSSVMSSVGRMSPEVS 73 (86)
Q Consensus 4 ~IrKgDeV~VI~----------Gk~KGk~GKV~~V~~~~~~~rkk~~V~VEgVn~~K~~g~pV~~snvmi~~~~~~~~~~ 73 (86)
+...||.|.|.. |-.+|++|.|..+. - ..+.= ..-++|..-.+--++...|.+.+=|-
T Consensus 36 rF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~------G--~~v~P----d~~A~G~ge~p~~lY~VrF~~~eLWg 103 (126)
T 2zzd_A 36 KFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLV------Y--ESPAA----EDEAFGNEENVEWFYSIVFAQKDLWP 103 (126)
T ss_dssp SSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEE------E--EECCH----HHHTTTCCSCCEEEEEEEEEHHHHCT
T ss_pred ccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEe------c--ccCCc----chhccCCCCCcceeEEEEecchhhCC
Confidence 467899999854 45789999998776 1 12221 22356665566677888887776664
Q ss_pred e
Q 041704 74 T 74 (86)
Q Consensus 74 ~ 74 (86)
.
T Consensus 104 ~ 104 (126)
T 2zzd_A 104 E 104 (126)
T ss_dssp T
T ss_pred C
Confidence 3
No 204
>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*
Probab=20.18 E-value=1.4e+02 Score=19.10 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=31.8
Q ss_pred ccCCCEEEEeecc--CCCeeeeEEEEEeccc-cCcccceEEEeceecccCCCcc
Q 041704 5 VRKDDEVQVVGGT--YKGREGKFVQIFAIFS-GVKRDLVVSYEPIFDPRIPLEP 55 (86)
Q Consensus 5 IrKgDeV~VI~Gk--~KGk~GKV~~V~~~~~-~~rkk~~V~VEgVn~~K~~g~p 55 (86)
|++||.|.+++=. .=...|+|..|+. + +|+=.-.|-.|.+|--...|..
T Consensus 1 i~RGskVrIlR~ESYWyn~vGtVasVD~--s~gi~YPV~VRFdkVNY~g~sG~~ 52 (75)
T 1jb0_E 1 VQRGSKVKILRPESYWYNEVGTVASVDQ--TPGVKYPVIVRFDKVNYTGYSGSA 52 (75)
T ss_dssp CCTTCEEEECCTTCTTBTCEEEEEEECC--CTTCSCCEEEECSSCCSCSSTTCC
T ss_pred CCCCCEEEEccccceeecCcceEEEEec--CCCccccEEEEEeeeccccccccc
Confidence 5789999999876 2344699999992 2 3333335666777654444443
Done!