BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041705
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 131 bits (329), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 95/159 (59%), Gaps = 4/159 (2%)
Query: 21 QLKIGFYSETCPEAEXXXXXXXXXXXXXDPNLAAVLLRLHFHDCFVEGCDGSILIENGPN 80
QL FY +CP DP +AA +LRLHFHDCFV GCD SIL++N +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 81 --AEKHAFGH-QGVGGFEVIEKAKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVP 137
EK AFG+ GF VI++ KA E ACP VSCAD++ +AA+ ++ L+ GPS++VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 138 TGRRDGEVSNVTLAD-DMPDVSDSIQQLKTKFLHNGLSE 175
GRRD + + LA+ ++P ++ QLK F + GL+
Sbjct: 122 LGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNR 160
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 95/159 (59%), Gaps = 4/159 (2%)
Query: 21 QLKIGFYSETCPEAEXXXXXXXXXXXXXDPNLAAVLLRLHFHDCFVEGCDGSILIENGPN 80
QL FY +CP DP +AA +LRLHFHDCFV GCD SIL++N +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 81 --AEKHAFGH-QGVGGFEVIEKAKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVP 137
EK AFG+ GF VI++ KA E ACP VSCAD++ +AA+ ++ L+ GPS++VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 138 TGRRDGEVSNVTLAD-DMPDVSDSIQQLKTKFLHNGLSE 175
GRRD + + LA+ ++P ++ QLK F + GL+
Sbjct: 122 LGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNR 160
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 95/159 (59%), Gaps = 4/159 (2%)
Query: 21 QLKIGFYSETCPEAEXXXXXXXXXXXXXDPNLAAVLLRLHFHDCFVEGCDGSILIENGPN 80
QL FY +CP DP +AA +LRLHFHDCFV GCD SIL++N +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 81 --AEKHAFGH-QGVGGFEVIEKAKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVP 137
EK AFG+ GF VI++ KA E ACP VSCAD++ +AA+ ++ L+ GPS++VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 138 TGRRDGEVSNVTLAD-DMPDVSDSIQQLKTKFLHNGLSE 175
GRRD + + LA+ ++P ++ QLK F + GL+
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNR 159
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 95/159 (59%), Gaps = 4/159 (2%)
Query: 21 QLKIGFYSETCPEAEXXXXXXXXXXXXXDPNLAAVLLRLHFHDCFVEGCDGSILIENGPN 80
QL FY +CP DP +AA +LRLHFHDCFV GCD SIL++N +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 81 --AEKHAFGH-QGVGGFEVIEKAKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVP 137
EK AFG+ GF VI++ KA E ACP VSCAD++ +AA+ ++ L+ GPS++VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 138 TGRRDGEVSNVTLAD-DMPDVSDSIQQLKTKFLHNGLSE 175
GRRD + + LA+ ++P ++ QLK F + GL+
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNR 160
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 95/159 (59%), Gaps = 4/159 (2%)
Query: 21 QLKIGFYSETCPEAEXXXXXXXXXXXXXDPNLAAVLLRLHFHDCFVEGCDGSILIENGPN 80
QL FY +CP DP +AA +LRLHFHDCFV GCD SIL++N +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 81 --AEKHAFGH-QGVGGFEVIEKAKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVP 137
EK AFG+ GF VI++ KA E ACP VSCAD++ +AA+ ++ L+ GPS++VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 138 TGRRDGEVSNVTLAD-DMPDVSDSIQQLKTKFLHNGLSE 175
GRRD + + LA+ ++P ++ QLK F + GL+
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNR 160
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 95/159 (59%), Gaps = 4/159 (2%)
Query: 21 QLKIGFYSETCPEAEXXXXXXXXXXXXXDPNLAAVLLRLHFHDCFVEGCDGSILIENGPN 80
QL FY +CP DP +AA +LRLHFHDCFV GCD SIL++N +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 81 --AEKHAFGH-QGVGGFEVIEKAKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVP 137
EK AFG+ GF VI++ KA E ACP VSCAD++ +AA+ ++ L+ GPS++VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 138 TGRRDGEVSNVTLAD-DMPDVSDSIQQLKTKFLHNGLSE 175
GRRD + + LA+ ++P ++ QLK F + GL+
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNR 160
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 95/159 (59%), Gaps = 4/159 (2%)
Query: 21 QLKIGFYSETCPEAEXXXXXXXXXXXXXDPNLAAVLLRLHFHDCFVEGCDGSILIENGPN 80
QL FY +CP DP +AA +LRLHFHDCFV GCD SIL++N +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 81 --AEKHAFGH-QGVGGFEVIEKAKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVP 137
EK AFG+ GF VI++ KA E ACP VSCAD++ +AA+ ++ L+ GPS++VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 138 TGRRDGEVSNVTLAD-DMPDVSDSIQQLKTKFLHNGLSE 175
GRRD + + LA+ ++P ++ QLK F + GL+
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNR 159
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 95/159 (59%), Gaps = 4/159 (2%)
Query: 21 QLKIGFYSETCPEAEXXXXXXXXXXXXXDPNLAAVLLRLHFHDCFVEGCDGSILIENGPN 80
QL FY +CP DP +AA +LRLHFHDCFV GCD SIL++N +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 81 --AEKHAFGH-QGVGGFEVIEKAKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVP 137
EK AFG+ GF VI++ KA E ACP VSCAD++ +AA+ ++ L+ GPS++VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 138 TGRRDGEVSNVTLAD-DMPDVSDSIQQLKTKFLHNGLSE 175
GRRD + + LA+ ++P ++ QLK F + GL+
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNR 159
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 95/159 (59%), Gaps = 4/159 (2%)
Query: 21 QLKIGFYSETCPEAEXXXXXXXXXXXXXDPNLAAVLLRLHFHDCFVEGCDGSILIENGPN 80
QL FY +CP DP +AA +LRLHFHDCFV GCD SIL++N +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 81 --AEKHAFGH-QGVGGFEVIEKAKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVP 137
EK AFG+ GF VI++ KA E ACP VSCAD++ +AA+ ++ L+ GPS++VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 138 TGRRDGEVSNVTLAD-DMPDVSDSIQQLKTKFLHNGLSE 175
GRRD + + LA+ ++P ++ QLK F + GL+
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNR 159
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 95/159 (59%), Gaps = 4/159 (2%)
Query: 21 QLKIGFYSETCPEAEXXXXXXXXXXXXXDPNLAAVLLRLHFHDCFVEGCDGSILIENGPN 80
QL FY +CP DP +AA +LRLHFHDCFV GCD SIL++N +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 81 --AEKHAFGH-QGVGGFEVIEKAKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVP 137
EK AFG+ GF VI++ KA E ACP VSCAD++ +AA+ ++ L+ GPS++VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 138 TGRRDGEVSNVTLAD-DMPDVSDSIQQLKTKFLHNGLSE 175
GRRD + + LA+ ++P ++ QLK F + GL+
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNR 159
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 129 bits (325), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 96/158 (60%), Gaps = 2/158 (1%)
Query: 21 QLKIGFYSETCPEAEXXXXXXXXXXXXXDPNLAAVLLRLHFHDCFVEGCDGSILIENGPN 80
QL Y+++CP + +AA L+RLHFHDCFV GCD S+L++ G +
Sbjct: 1 QLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLD-GAD 59
Query: 81 AEKHAFGH-QGVGGFEVIEKAKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVPTG 139
+EK A + GFEVI+ KA E+ACPGVVSCADI+ LAARD++ LS GP ++V G
Sbjct: 60 SEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVALG 119
Query: 140 RRDGEVSNVTLADDMPDVSDSIQQLKTKFLHNGLSEKD 177
R+DG V+N A+++P + + + KF+ L+ D
Sbjct: 120 RKDGLVANQNSANNLPSPFEPLDAIIAKFVAVNLNITD 157
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Query: 21 QLKIGFYSETCPEAEXXXXXXXXXXXXXDPNLAAVLLRLHFHDCFVEGCDGSILIENGPN 80
QL FY +CP DP +AA +LRLHF DCFV GCD SIL++N +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 81 --AEKHAFGH-QGVGGFEVIEKAKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVP 137
EK AFG+ GF VI++ KA E ACP VSCAD++ +AA+ ++ L+ GPS++VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 138 TGRRDGEVSNVTLAD-DMPDVSDSIQQLKTKFLHNGLSE 175
GRRD + + LA+ ++P ++ QLK F + GL+
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNR 160
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 94/157 (59%), Gaps = 4/157 (2%)
Query: 22 LKIGFYSETCPEAEXXXXXXXXXXXXXDPNLAAVLLRLHFHDCFVEGCDGSILIENGPN- 80
L+IGFY+ +CP AE + +A L+R+HFHDCFV GCD S+L+++ N
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 81 -AEKHAF-GHQGVGGFEVIEKAKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVPT 138
AEK A + + GFEVI AK+ E ACP VSCADI+A AARD+ L+ +YQVP+
Sbjct: 62 TAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPS 121
Query: 139 GRRDGEVSNVTLAD-DMPDVSDSIQQLKTKFLHNGLS 174
GRRDG VS + A+ +P + QL F + L+
Sbjct: 122 GRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLT 158
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 93/159 (58%), Gaps = 4/159 (2%)
Query: 21 QLKIGFYSETCPEAEXXXXXXXXXXXXXDPNLAAVLLRLHFHDCFVEGCDGSILIENGPN 80
QL FY +CP DP +AA +L LHF DCFV GCD SIL++N +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 81 --AEKHAFGH-QGVGGFEVIEKAKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVP 137
EK AFG+ GF VI++ KA E ACP VSCAD++ +AA+ ++ L+ GPS++VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 138 TGRRDGEVSNVTLAD-DMPDVSDSIQQLKTKFLHNGLSE 175
GRRD + + LA+ ++P ++ QLK F + GL+
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNR 159
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 123 bits (308), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 90/161 (55%), Gaps = 4/161 (2%)
Query: 21 QLKIGFYSETCPEAEXXXXXXXXXXXXXDPNLAAVLLRLHFHDCFVEGCDGSILIENGPN 80
QL FY ETCP DP + A L+RLHFHDCFV+GCDGS+L+ N
Sbjct: 1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDT 60
Query: 81 --AEKHAFGH-QGVGGFEVIEKAKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVP 137
+E+ A + + G +V+ K E++CP VSCADI+A+AA A L GP + VP
Sbjct: 61 IESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVP 120
Query: 138 TGRRDGEVSNVTLAD-DMPDVSDSIQQLKTKFLHNGLSEKD 177
GRRD +N TLA+ ++P ++ QLK F GL+ D
Sbjct: 121 LGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLD 161
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 122 bits (307), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 90/169 (53%), Gaps = 18/169 (10%)
Query: 20 GQLKIGFYSETCPEAEXXXXXXXXXXXXXDPNLAAVLLRLHFHDCFVEGCDGSILIEN-- 77
G L FY+ TCP A D + A L+RLHFHDCFV GCD SIL++N
Sbjct: 2 GSLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSG 61
Query: 78 --------GPNAEKHAFGHQGVGGFEVIEKAKARSEDACPGVVSCADIVALAARDAIALS 129
GPNA GF V++ K E+ACPGVVSC D++ALA++ +++LS
Sbjct: 62 SIISEKNAGPNANSAR-------GFNVVDNIKTALENACPGVVSCTDVLALASQASVSLS 114
Query: 130 NGPSYQVPTGRRDGEVSNVTLAD-DMPDVSDSIQQLKTKFLHNGLSEKD 177
GPS+ V GRRD +N A+ +P + + + +KF GL+ D
Sbjct: 115 GGPSWTVDLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTND 163
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 93/161 (57%), Gaps = 4/161 (2%)
Query: 21 QLKIGFYSETCPEAEXXXXXXXXXXXXXDPNLAAVLLRLHFHDCFVEGCDGSILIEN--G 78
QL FYS TCP A D + A L+RLHFHDCFV GCD SIL+++
Sbjct: 2 QLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGS 61
Query: 79 PNAEKHAFGH-QGVGGFEVIEKAKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVP 137
+EK+A + GF V++ K E+ACPGVVSC+D++ALA+ +++L+ GPS+ V
Sbjct: 62 IQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVL 121
Query: 138 TGRRDGEVSNVTLAD-DMPDVSDSIQQLKTKFLHNGLSEKD 177
GRRD +N+ A+ +P +S+ + KF GL+ D
Sbjct: 122 LGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTND 162
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 93/160 (58%), Gaps = 4/160 (2%)
Query: 22 LKIGFYSETCPEAEXXXXXXXXXXXXXDPNLAAVLLRLHFHDCFVEGCDGSILIENGPN- 80
L FY+ CP A + + A LLRLHFHDCFV+GCD S+L+++ N
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 81 -AEKHAFGH-QGVGGFEVIEKAKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVPT 138
EK A + + GFEVI+ K++ E CPGVVSCADI+A+AARD++ G S+ V
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 139 GRRDGEVSNVTLAD-DMPDVSDSIQQLKTKFLHNGLSEKD 177
GRRD ++++ A+ D+P ++ L + F + G + K+
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKE 161
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 85/149 (57%), Gaps = 9/149 (6%)
Query: 22 LKIGFYSETCPEAEXXXXXXXXXXXXXDPNLAAVLLRLHFHDCFVEGCDGSILIE---NG 78
L FY +TCP AE D LAA LLRLHFHDCFV+GCD S+L++ G
Sbjct: 9 LSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATG 68
Query: 79 PNAEKHAFGHQGV--GGFEVIEKAKARSEDACPG-VVSCADIVALAARDAIALSNGPSYQ 135
P E+ A + + F+ + + R E C G VVSC+DI+ALAARD++ +S GP Y+
Sbjct: 69 P-GEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYR 127
Query: 136 VPTGRRDGE--VSNVTLADDMPDVSDSIQ 162
VP GRRD S + D+P S ++Q
Sbjct: 128 VPLGRRDSRSFASTQDVLSDLPGPSSNVQ 156
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 19/136 (13%)
Query: 52 LAAVLLRLHFH-----DCFVEGCDGSILIENGPNAEKHAFG----HQGVGGFEVIEKAKA 102
L L+RL +H DCF + DGS PN+ F + G G ++ KA
Sbjct: 26 LGPSLIRLAWHEAASYDCFKK--DGS------PNSASMRFKPECLYAGNKGLDIPRKALE 77
Query: 103 RSEDACPGVVSCADIVALAARDAIALSNGPSYQVPTGRRDGEVSNVTLAD-DMPDVSDSI 161
+ P + S AD+ LAA AI GP+ GR D + +V D +PD S +
Sbjct: 78 TLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQ 136
Query: 162 QQLKTKFLHNGLSEKD 177
++ F G ++++
Sbjct: 137 SHVREVFRRLGFNDQE 152
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 19/136 (13%)
Query: 52 LAAVLLRLHFH-----DCFVEGCDGSILIENGPNAEKHAFG----HQGVGGFEVIEKAKA 102
L L+RL +H DCF + DGS PN+ F + G G ++ KA
Sbjct: 25 LGPSLIRLAWHEAASYDCFKK--DGS------PNSASMRFKPECLYAGNKGLDIPRKALE 76
Query: 103 RSEDACPGVVSCADIVALAARDAIALSNGPSYQVPTGRRDGEVSNVTLAD-DMPDVSDSI 161
+ P + S AD+ LAA AI GP+ GR D + +V D +PD S +
Sbjct: 77 TLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQ 135
Query: 162 QQLKTKFLHNGLSEKD 177
++ F G ++++
Sbjct: 136 SHVREVFRRLGFNDQE 151
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 19/136 (13%)
Query: 52 LAAVLLRLHFH-----DCFVEGCDGSILIENGPNAEKHAFG----HQGVGGFEVIEKAKA 102
L L+RL +H DCF + DGS PN+ F + G G ++ KA
Sbjct: 26 LGPSLIRLAWHEAASYDCFKK--DGS------PNSASMRFKPECLYAGNKGLDIPRKALE 77
Query: 103 RSEDACPGVVSCADIVALAARDAIALSNGPSYQVPTGRRDGEVSNVTLAD-DMPDVSDSI 161
+ P + S AD+ LAA AI GP+ GR D + +V D +PD S +
Sbjct: 78 TLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQ 136
Query: 162 QQLKTKFLHNGLSEKD 177
++ F G ++++
Sbjct: 137 SHVREVFRRLGFNDQE 152
>pdb|3PG8|A Chain A, Truncated Form Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Thermotoga Maritima
pdb|3PG8|B Chain B, Truncated Form Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Thermotoga Maritima
Length = 272
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 79 PNAEKHAFGHQGVGGFEVIEKA----------KARSEDACPGVVSCADIVALAARDA--- 125
P ++F G G E + +A +A ED P V ADI+ + AR+A
Sbjct: 66 PRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNF 125
Query: 126 IALSNGPSYQVPTGRRDGEVSNV 148
LS SY P + G ++ +
Sbjct: 126 RLLSKAGSYNKPVLLKRGFMNTI 148
>pdb|1VR6|A Chain A, Crystal Structure Of Phospho-2-dehydro-3-deoxyheptonate
Aldolase (dahp Synthase) (tm0343) From Thermotoga
Maritima At 1.92 A Resolution
pdb|1VR6|B Chain B, Crystal Structure Of Phospho-2-dehydro-3-deoxyheptonate
Aldolase (dahp Synthase) (tm0343) From Thermotoga
Maritima At 1.92 A Resolution
pdb|1VR6|C Chain C, Crystal Structure Of Phospho-2-dehydro-3-deoxyheptonate
Aldolase (dahp Synthase) (tm0343) From Thermotoga
Maritima At 1.92 A Resolution
pdb|1VR6|D Chain D, Crystal Structure Of Phospho-2-dehydro-3-deoxyheptonate
Aldolase (dahp Synthase) (tm0343) From Thermotoga
Maritima At 1.92 A Resolution
Length = 350
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 79 PNAEKHAFGHQGVGGFEVIEKA----------KARSEDACPGVVSCADIVALAARDA--- 125
P ++F G G E + +A +A ED P V ADI+ + AR+A
Sbjct: 144 PRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNF 203
Query: 126 IALSNGPSYQVPTGRRDGEVSNV 148
LS SY P + G ++ +
Sbjct: 204 RLLSKAGSYNKPVLLKRGFMNTI 226
>pdb|1RZM|A Chain A, Crystal Structure Of
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
(Dahps) From Thermotoga Maritima Complexed With Cd2+,
Pep And E4p
pdb|1RZM|B Chain B, Crystal Structure Of
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
(Dahps) From Thermotoga Maritima Complexed With Cd2+,
Pep And E4p
pdb|3PG9|A Chain A, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|B Chain B, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|C Chain C, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|D Chain D, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|E Chain E, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|F Chain F, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|G Chain G, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
pdb|3PG9|H Chain H, Thermotoga Maritima Dah7p Synthase In Complex With
Inhibitor
Length = 338
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 79 PNAEKHAFGHQGVGGFEVIEKA----------KARSEDACPGVVSCADIVALAARDA--- 125
P ++F G G E + +A +A ED P V ADI+ + AR+A
Sbjct: 132 PRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNF 191
Query: 126 IALSNGPSYQVPTGRRDGEVSNV 148
LS SY P + G ++ +
Sbjct: 192 RLLSKAGSYNKPVLLKRGFMNTI 214
>pdb|3PUF|A Chain A, Crystal Structure Of Human Rnase H2 Complex
pdb|3PUF|D Chain D, Crystal Structure Of Human Rnase H2 Complex
pdb|3PUF|G Chain G, Crystal Structure Of Human Rnase H2 Complex
pdb|3PUF|J Chain J, Crystal Structure Of Human Rnase H2 Complex
pdb|3PUF|M Chain M, Crystal Structure Of Human Rnase H2 Complex
pdb|3PUF|P Chain P, Crystal Structure Of Human Rnase H2 Complex
Length = 302
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 88 HQGVGGFEVIEKAKARSEDACPGVVSCADIVALAARD 124
Q G EV KAKA DA VVS A I A ARD
Sbjct: 157 QQSFPGIEVTVKAKA---DALYPVVSAASICAKVARD 190
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 10/129 (7%)
Query: 53 AAVLLRLHFHDCFVEGCDGSILIENGPNAE-KHA--FGHQGVGGFEVIEKAKARSEDACP 109
A ++LRL +H G S GP KH H G ++ + ++ P
Sbjct: 32 APLILRLAWHSA---GTFDSKTKTGGPFGTIKHQAELAHGANNGLDIAVRLLEPIKEQFP 88
Query: 110 GVVSCADIVALAARDAIALSNGPSYQVPTGRRDGEVSNVTLADDMPDVSDSIQQLKTKF- 168
+VS AD LA A+ ++ GP GR D +PD + L+ F
Sbjct: 89 -IVSYADFYQLAGVVAVEITGGPEVPFHPGREDK--PEPPPEGRLPDATKGSDHLRDVFG 145
Query: 169 LHNGLSEKD 177
GLS++D
Sbjct: 146 KAMGLSDQD 154
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 112 VSCADIVALAARDAIALSNGPSYQVPTGRRD-GEVSNVTLADDMPDVS--DSIQQLKTKF 168
V+ AD+ LA+ AI + GP + GR D E +PD Q L+ F
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 169 LHNGLSEKD 177
GL++K+
Sbjct: 147 YRMGLNDKE 155
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 37/127 (29%)
Query: 58 RLHFHDCFVEGCDGSILIENGPNAEKHAFGHQGVGGFEV-------IEKAKARSEDACPG 110
+H +D ++ DG +NG GH GF++ I A +++D C
Sbjct: 132 NVHLNDFTIDNSDGD---DNG--------GHN-TDGFDISESTGVYISGATVKNQDDC-- 177
Query: 111 VVSCADIVALAARDAIALSNGP-------SYQVPTGRRDGEVSNVTLADDMPDVSDSIQQ 163
+A+ + ++I+ + G S GR D V NVT++D VS+S
Sbjct: 178 -------IAINSGESISFTGGTCSGGHGLSIGSVGGRDDNTVKNVTISDST--VSNSANG 228
Query: 164 LKTKFLH 170
++ K ++
Sbjct: 229 VRIKTIY 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,625,018
Number of Sequences: 62578
Number of extensions: 167276
Number of successful extensions: 410
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 29
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)