Query 041705
Match_columns 197
No_of_seqs 144 out of 1240
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:49:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 1.6E-67 3.5E-72 462.9 13.9 178 17-195 20-197 (324)
2 cd00693 secretory_peroxidase H 100.0 7.7E-63 1.7E-67 431.0 13.0 175 21-195 1-177 (298)
3 PF00141 peroxidase: Peroxidas 100.0 7.6E-54 1.6E-58 362.5 6.1 154 38-194 1-156 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 3.9E-47 8.4E-52 329.7 12.6 146 36-193 15-168 (289)
5 cd00691 ascorbate_peroxidase A 100.0 4.3E-47 9.3E-52 325.2 11.8 155 32-194 10-171 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 1.7E-46 3.6E-51 320.8 11.6 158 24-193 3-171 (250)
7 cd00692 ligninase Ligninase an 100.0 3E-45 6.5E-50 322.9 12.5 152 34-194 16-183 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 4.2E-45 9E-50 312.1 12.4 146 36-193 18-171 (251)
9 cd00314 plant_peroxidase_like 100.0 1.8E-42 3.9E-47 296.1 11.0 153 37-195 2-170 (255)
10 cd08201 plant_peroxidase_like_ 100.0 1E-42 2.2E-47 297.8 4.2 139 43-195 32-179 (264)
11 cd00649 catalase_peroxidase_1 100.0 5.2E-34 1.1E-38 256.1 8.8 152 36-195 45-252 (409)
12 TIGR00198 cat_per_HPI catalase 100.0 1.5E-32 3.2E-37 260.4 9.3 160 27-194 45-260 (716)
13 PRK15061 catalase/hydroperoxid 100.0 3.2E-30 6.9E-35 243.7 9.6 160 27-194 47-264 (726)
14 cd08200 catalase_peroxidase_2 99.9 3.4E-27 7.4E-32 204.7 10.2 149 40-192 17-199 (297)
15 TIGR00198 cat_per_HPI catalase 99.9 4.3E-23 9.3E-28 196.2 11.0 149 37-192 429-612 (716)
16 PRK15061 catalase/hydroperoxid 99.9 9.9E-23 2.2E-27 193.1 10.7 149 40-192 442-624 (726)
17 COG0376 KatG Catalase (peroxid 99.8 2.2E-20 4.8E-25 171.3 9.6 149 37-193 71-275 (730)
18 COG0376 KatG Catalase (peroxid 98.0 8.8E-06 1.9E-10 76.1 6.3 137 40-184 452-619 (730)
19 COG3763 Uncharacterized protei 60.3 18 0.00039 25.4 4.0 29 36-64 23-51 (71)
20 PF14919 MTBP_mid: MDM2-bindin 43.0 29 0.00062 31.3 3.4 68 83-179 264-331 (342)
21 KOG0400 40S ribosomal protein 42.6 14 0.0003 29.2 1.3 36 159-194 31-67 (151)
22 PTZ00411 transaldolase-like pr 41.8 18 0.00038 32.6 2.0 59 129-187 180-252 (333)
23 PRK01844 hypothetical protein; 38.3 34 0.00074 24.1 2.6 28 37-64 24-51 (72)
24 PRK12346 transaldolase A; Prov 36.9 33 0.00072 30.7 2.9 76 112-187 150-241 (316)
25 PF08782 c-SKI_SMAD_bind: c-SK 32.7 16 0.00036 27.1 0.3 14 60-74 4-17 (96)
26 cd00957 Transaldolase_TalAB Tr 31.1 41 0.00089 30.0 2.6 58 129-186 168-239 (313)
27 PRK12309 transaldolase/EF-hand 31.0 58 0.0013 29.9 3.6 59 129-187 174-246 (391)
28 KOG3803 Transcription factor c 30.5 31 0.00068 34.0 1.8 35 29-76 670-704 (968)
29 PRK00523 hypothetical protein; 28.9 59 0.0013 22.9 2.5 28 37-64 25-52 (72)
30 PF04225 OapA: Opacity-associa 28.3 40 0.00087 24.1 1.7 25 161-185 10-34 (85)
31 cd00439 Transaldolase Transald 28.1 46 0.001 28.6 2.3 59 129-187 159-231 (252)
32 PF03744 BioW: 6-carboxyhexano 27.0 1.2E+02 0.0027 26.1 4.7 59 67-126 107-170 (239)
33 PF09533 DUF2380: Predicted li 24.9 72 0.0016 26.5 2.7 25 161-185 107-131 (188)
34 PRK05269 transaldolase B; Prov 24.0 49 0.0011 29.6 1.8 59 129-187 170-242 (318)
35 PRK13859 type IV secretion sys 23.9 51 0.0011 21.8 1.4 30 117-146 9-41 (55)
36 PF01530 zf-C2HC: Zinc finger, 23.4 37 0.00081 20.0 0.6 13 64-76 4-16 (31)
37 TIGR00874 talAB transaldolase. 21.3 75 0.0016 28.5 2.4 60 128-187 167-240 (317)
38 PF06585 JHBP: Haemolymph juve 21.1 77 0.0017 26.3 2.3 48 1-48 1-53 (248)
39 KOG4252 GTP-binding protein [S 20.4 71 0.0015 26.9 1.9 37 62-108 82-122 (246)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.6e-67 Score=462.92 Aligned_cols=178 Identities=49% Similarity=0.823 Sum_probs=169.9
Q ss_pred hccCCCCcCcccCCChhHHHHHHHHHHHHHHcCCchhhhhhhhhcccccccCCCcceeecCCCCcccccCCCCCCchhHH
Q 041705 17 YSAGQLKIGFYSETCPEAESIVSSVVQDAVVSDPNLAAVLLRLHFHDCFVEGCDGSILIENGPNAEKHAFGHQGVGGFEV 96 (197)
Q Consensus 17 ~~~~~L~~~fY~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRL~FHDc~v~GcDgSill~~~~~~E~~~~~N~gL~~~~~ 96 (197)
+.+++|+++||++|||++|+||++.|++.+.+|++++|++|||+||||||+||||||||+++. .|+++++|.+|+||++
T Consensus 20 ~~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~~-~Ek~a~~N~~l~Gf~~ 98 (324)
T PLN03030 20 VQGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGSN-TEKTALPNLLLRGYDV 98 (324)
T ss_pred chhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCCc-ccccCCCCcCcchHHH
Confidence 445779999999999999999999999999999999999999999999999999999999654 7999999999999999
Q ss_pred HHHHHHHhhhhCCCCCCHHHHHHHhhhhhhhhcCCCcccccCCCccCCCCccccCCCCCCCCCcHHHHHHHHHHCCCCcc
Q 041705 97 IEKAKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVPTGRRDGEVSNVTLADDMPDVSDSIQQLKTKFLHNGLSEK 176 (197)
Q Consensus 97 i~~iK~~le~~cp~~VScADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~ 176 (197)
|+.||+.+|++||++|||||||++|+|+||+++|||.|+|++||||+.+|..+++.+||.|+.+++++++.|+++||+.+
T Consensus 99 i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~ 178 (324)
T PLN03030 99 IDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKFAAKGLNTQ 178 (324)
T ss_pred HHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHHHHcCCCHH
Confidence 99999999999999999999999999999999999999999999999998766557899999999999999999999999
Q ss_pred chhhhhccchhhhhhhhhh
Q 041705 177 DLVLLSGMLSLSLSLFLMH 195 (197)
Q Consensus 177 dlVaL~GaHTiG~~~~~~~ 195 (197)
|||+||||||||++||..+
T Consensus 179 DlVaLsGAHTiG~ahC~~f 197 (324)
T PLN03030 179 DLVTLVGGHTIGTTACQFF 197 (324)
T ss_pred Hheeeeeccccceeeeecc
Confidence 9999999999999999765
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=7.7e-63 Score=431.03 Aligned_cols=175 Identities=54% Similarity=0.876 Sum_probs=166.8
Q ss_pred CCCcCcccCCChhHHHHHHHHHHHHHHcCCchhhhhhhhhcccccccCCCcceeecCCCC--cccccCCCCCCchhHHHH
Q 041705 21 QLKIGFYSETCPEAESIVSSVVQDAVVSDPNLAAVLLRLHFHDCFVEGCDGSILIENGPN--AEKHAFGHQGVGGFEVIE 98 (197)
Q Consensus 21 ~L~~~fY~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRL~FHDc~v~GcDgSill~~~~~--~E~~~~~N~gL~~~~~i~ 98 (197)
||+++||++|||++|+||++.|++.+.+|++++|++|||+||||||+||||||+|+++.+ .|+++++|.||+||++|+
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l~g~~~i~ 80 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSLRGFDVID 80 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCcchhHHHH
Confidence 599999999999999999999999999999999999999999999999999999997643 899999999999999999
Q ss_pred HHHHHhhhhCCCCCCHHHHHHHhhhhhhhhcCCCcccccCCCccCCCCccccCCCCCCCCCcHHHHHHHHHHCCCCccch
Q 041705 99 KAKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVPTGRRDGEVSNVTLADDMPDVSDSIQQLKTKFLHNGLSEKDL 178 (197)
Q Consensus 99 ~iK~~le~~cp~~VScADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dl 178 (197)
+||+++|+.||++|||||||++|+|+||+.+|||.|+|++||+|+..+.+..+++||.|+.+++++++.|+++||+++||
T Consensus 81 ~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~d~ 160 (298)
T cd00693 81 DIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLFASKGLTVTDL 160 (298)
T ss_pred HHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHHHHcCCCHHHh
Confidence 99999999999999999999999999999999999999999999987765544689999999999999999999999999
Q ss_pred hhhhccchhhhhhhhhh
Q 041705 179 VLLSGMLSLSLSLFLMH 195 (197)
Q Consensus 179 VaL~GaHTiG~~~~~~~ 195 (197)
|||+||||||++||..+
T Consensus 161 VaL~GaHTiG~~hc~~f 177 (298)
T cd00693 161 VALSGAHTIGRAHCSSF 177 (298)
T ss_pred eeecccceeeeeecccc
Confidence 99999999999998654
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=7.6e-54 Score=362.45 Aligned_cols=154 Identities=53% Similarity=0.822 Sum_probs=141.8
Q ss_pred HHHHHHHHHHcCCchhhhhhhhhcccccc-cCCCcceeecCCCCcccccCCCCCCc-hhHHHHHHHHHhhhhCCCCCCHH
Q 041705 38 VSSVVQDAVVSDPNLAAVLLRLHFHDCFV-EGCDGSILIENGPNAEKHAFGHQGVG-GFEVIEKAKARSEDACPGVVSCA 115 (197)
Q Consensus 38 V~~~v~~~~~~~~~~a~~~lRL~FHDc~v-~GcDgSill~~~~~~E~~~~~N~gL~-~~~~i~~iK~~le~~cp~~VScA 115 (197)
||+.|++.+.++++++|++|||+||||++ +||||||++.. .|+++++|.||+ ++++|++||+++|++||++||||
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~~---~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS~A 77 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLFS---AEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVSCA 77 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGST---TGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-HH
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceeccc---cccccccccCcceeeechhhHHhhhcccccCCCCHH
Confidence 79999999999999999999999999999 99999999843 799999999999 99999999999999999999999
Q ss_pred HHHHHhhhhhhhhcCCCcccccCCCccCCCCccccCCCCCCCCCcHHHHHHHHHHCCCCccchhhhhccchhhhhhhhh
Q 041705 116 DIVALAARDAIALSNGPSYQVPTGRRDGEVSNVTLADDMPDVSDSIQQLKTKFLHNGLSEKDLVLLSGMLSLSLSLFLM 194 (197)
Q Consensus 116 DiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL~GaHTiG~~~~~~ 194 (197)
|||++|+++||+.+|||.|+|++||+|+.++++.++.+||.|+.+++++++.|+++|||++|||||+||||||++|+..
T Consensus 78 DiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c~~ 156 (230)
T PF00141_consen 78 DIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHCSS 156 (230)
T ss_dssp HHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESGGC
T ss_pred HHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhhccccchhhhcceecccccccceecc
Confidence 9999999999999999999999999999999875434699999999999999999999999999999999999999873
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=3.9e-47 Score=329.72 Aligned_cols=146 Identities=28% Similarity=0.426 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHcCCchhhhhhhhhccccc-------ccCCCcceeecCCCCcccccCCCCCCc-hhHHHHHHHHHhhhh
Q 041705 36 SIVSSVVQDAVVSDPNLAAVLLRLHFHDCF-------VEGCDGSILIENGPNAEKHAFGHQGVG-GFEVIEKAKARSEDA 107 (197)
Q Consensus 36 ~iV~~~v~~~~~~~~~~a~~~lRL~FHDc~-------v~GcDgSill~~~~~~E~~~~~N~gL~-~~~~i~~iK~~le~~ 107 (197)
+-+++++++ +.+|+.++|.+|||+||||+ ++||||||+++ .|+++++|.||+ +|++|++||+++
T Consensus 15 ~~~~~~~~~-~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~----~E~~~~~N~gL~~g~~vid~iK~~~--- 86 (289)
T PLN02608 15 EKARRDLRA-LIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE----EEYSHGANNGLKIAIDLCEPVKAKH--- 86 (289)
T ss_pred HHHHHHHHH-HHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc----cccCCccccchHHHHHHHHHHHHHc---
Confidence 345666644 67789999999999999999 89999999986 799999999995 999999999987
Q ss_pred CCCCCCHHHHHHHhhhhhhhhcCCCcccccCCCccCCCCccccCCCCCCCCCcHHHHHHHHHHCCCCccchhhhhccchh
Q 041705 108 CPGVVSCADIVALAARDAIALSNGPSYQVPTGRRDGEVSNVTLADDMPDVSDSIQQLKTKFLHNGLSEKDLVLLSGMLSL 187 (197)
Q Consensus 108 cp~~VScADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL~GaHTi 187 (197)
++|||||||++|+|+||+.+|||.|+|++||+|+.++++. ++||.|+.+++++++.|+++||+++|||+|+|||||
T Consensus 87 --~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~--~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAHTi 162 (289)
T PLN02608 87 --PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEE--GRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGHTL 162 (289)
T ss_pred --CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCcc--CCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcccccc
Confidence 4899999999999999999999999999999999988654 689999999999999999999999999999999999
Q ss_pred hhhhhh
Q 041705 188 SLSLFL 193 (197)
Q Consensus 188 G~~~~~ 193 (197)
|++||.
T Consensus 163 G~ahc~ 168 (289)
T PLN02608 163 GRAHPE 168 (289)
T ss_pred cccccc
Confidence 999985
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=4.3e-47 Score=325.18 Aligned_cols=155 Identities=24% Similarity=0.307 Sum_probs=138.9
Q ss_pred hhHHHHHHHHHHHHHHcCCchhhhhhhhhcccccccCCCcceeecCCCC-----cccccCCCCCC-chhHHHHHHHHHhh
Q 041705 32 PEAESIVSSVVQDAVVSDPNLAAVLLRLHFHDCFVEGCDGSILIENGPN-----AEKHAFGHQGV-GGFEVIEKAKARSE 105 (197)
Q Consensus 32 P~~e~iV~~~v~~~~~~~~~~a~~~lRL~FHDc~v~GcDgSill~~~~~-----~E~~~~~N~gL-~~~~~i~~iK~~le 105 (197)
-..++||++.|++.+. ++++++++|||+|||||+ ||+|+..++.++ +|+++++|.+| ++|++|++||+++
T Consensus 10 ~~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~- 85 (253)
T cd00691 10 AKDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY- 85 (253)
T ss_pred HHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc-
Confidence 3568899999999999 999999999999999984 555554432211 69999999999 7999999999986
Q ss_pred hhCCCCCCHHHHHHHhhhhhhhhcCCCcccccCCCccCCCCccccC-CCCCCCCCcHHHHHHHHHHCCCCccchhhhhcc
Q 041705 106 DACPGVVSCADIVALAARDAIALSNGPSYQVPTGRRDGEVSNVTLA-DDMPDVSDSIQQLKTKFLHNGLSEKDLVLLSGM 184 (197)
Q Consensus 106 ~~cp~~VScADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL~Ga 184 (197)
| +|||||||++|+|+||+.+|||.|+|++||+|+.++....+ ++||.|+.++++++++|+++||+++|||+|+||
T Consensus 86 ---~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGa 161 (253)
T cd00691 86 ---P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGA 161 (253)
T ss_pred ---C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhccc
Confidence 4 89999999999999999999999999999999999986666 789999999999999999999999999999999
Q ss_pred chhhhhhhhh
Q 041705 185 LSLSLSLFLM 194 (197)
Q Consensus 185 HTiG~~~~~~ 194 (197)
||||++||..
T Consensus 162 HTiG~a~c~~ 171 (253)
T cd00691 162 HTLGRCHKER 171 (253)
T ss_pred ceeecccccC
Confidence 9999999853
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=1.7e-46 Score=320.80 Aligned_cols=158 Identities=25% Similarity=0.397 Sum_probs=144.5
Q ss_pred cCccc--CCChhHHHHHHHHHHHHHHcCCchhhhhhhhhcc-----ccccc--CCCcceeecCCCCcccccCCCCCC-ch
Q 041705 24 IGFYS--ETCPEAESIVSSVVQDAVVSDPNLAAVLLRLHFH-----DCFVE--GCDGSILIENGPNAEKHAFGHQGV-GG 93 (197)
Q Consensus 24 ~~fY~--~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRL~FH-----Dc~v~--GcDgSill~~~~~~E~~~~~N~gL-~~ 93 (197)
.+||. +-||++++.+++.+++.+ .+++++|.+|||+|| ||+++ ||||||.++ .|+++++|.|| ++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~----~E~~~~~N~gl~~~ 77 (250)
T PLN02364 3 KNYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFD----AEQAHGANSGIHIA 77 (250)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCcccccc----ccccCCCccCHHHH
Confidence 35666 448899999999999977 789999999999999 77775 999999765 79999999999 69
Q ss_pred hHHHHHHHHHhhhhCCCCCCHHHHHHHhhhhhhhhcCCCcccccCCCccCCCCccccCCCCCCCCCcHHHHHHHHHH-CC
Q 041705 94 FEVIEKAKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVPTGRRDGEVSNVTLADDMPDVSDSIQQLKTKFLH-NG 172 (197)
Q Consensus 94 ~~~i~~iK~~le~~cp~~VScADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~-~G 172 (197)
|++|++||+++ ++|||||||+||+|+||+.+|||.|+|++||+|+.++.+. ++||.|+.+++++++.|++ +|
T Consensus 78 ~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~--~~lP~p~~~~~~l~~~F~~~~G 150 (250)
T PLN02364 78 LRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPE--GRLPDATKGCDHLRDVFAKQMG 150 (250)
T ss_pred HHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCccccccc--CCCCCCCcCHHHHHHHHHHhcC
Confidence 99999999998 5899999999999999999999999999999999998765 6899999999999999997 59
Q ss_pred CCccchhhhhccchhhhhhhh
Q 041705 173 LSEKDLVLLSGMLSLSLSLFL 193 (197)
Q Consensus 173 l~~~dlVaL~GaHTiG~~~~~ 193 (197)
|+++|||||+||||||++|+.
T Consensus 151 l~~~d~VaLsGaHTiG~~hc~ 171 (250)
T PLN02364 151 LSDKDIVALSGAHTLGRCHKD 171 (250)
T ss_pred CCHHHheeeecceeeccccCC
Confidence 999999999999999999983
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=3e-45 Score=322.92 Aligned_cols=152 Identities=25% Similarity=0.353 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHcCC---chhhhhhhhhcccccc------------cCCCcceeecCCCCcccccCCCCCCchhHHHH
Q 041705 34 AESIVSSVVQDAVVSDP---NLAAVLLRLHFHDCFV------------EGCDGSILIENGPNAEKHAFGHQGVGGFEVIE 98 (197)
Q Consensus 34 ~e~iV~~~v~~~~~~~~---~~a~~~lRL~FHDc~v------------~GcDgSill~~~~~~E~~~~~N~gL~~~~~i~ 98 (197)
+|..|++++++.+..+. ..|+.+|||+||||++ +|||||||++.+ .|+++++|.||+ ++|+
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~--~E~~~~~N~gL~--~vvd 91 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD--IETAFHANIGLD--EIVE 91 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc--ccccCCCCCCHH--HHHH
Confidence 37889999999998654 5677899999999996 899999999854 699999999998 8999
Q ss_pred HHHHHhhhhCCCCCCHHHHHHHhhhhhhhh-cCCCcccccCCCccCCCCccccCCCCCCCCCcHHHHHHHHHHCCCCccc
Q 041705 99 KAKARSEDACPGVVSCADIVALAARDAIAL-SNGPSYQVPTGRRDGEVSNVTLADDMPDVSDSIQQLKTKFLHNGLSEKD 177 (197)
Q Consensus 99 ~iK~~le~~cp~~VScADiialAa~~av~~-~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~d 177 (197)
.+|..+|++| |||||||+||+|+||+. .|||.|+|++||+|++.+.+. ++||.|+.+++++++.|+++||+++|
T Consensus 92 ~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~--g~LP~p~~sv~~l~~~F~~~Gf~~~E 166 (328)
T cd00692 92 ALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPD--GLVPEPFDSVDKILARFADAGFSPDE 166 (328)
T ss_pred HHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcc--cCCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 9999999998 99999999999999995 599999999999999998766 78999999999999999999999999
Q ss_pred hhhhhccchhhhhhhhh
Q 041705 178 LVLLSGMLSLSLSLFLM 194 (197)
Q Consensus 178 lVaL~GaHTiG~~~~~~ 194 (197)
||+|+||||||++|..+
T Consensus 167 ~VaLsGAHTiG~a~~~D 183 (328)
T cd00692 167 LVALLAAHSVAAQDFVD 183 (328)
T ss_pred HhhhcccccccccCCCC
Confidence 99999999999998643
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=4.2e-45 Score=312.05 Aligned_cols=146 Identities=23% Similarity=0.330 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHcCCchhhhhhhhhcccccc-------cCCCcceeecCCCCcccccCCCCCCc-hhHHHHHHHHHhhhh
Q 041705 36 SIVSSVVQDAVVSDPNLAAVLLRLHFHDCFV-------EGCDGSILIENGPNAEKHAFGHQGVG-GFEVIEKAKARSEDA 107 (197)
Q Consensus 36 ~iV~~~v~~~~~~~~~~a~~~lRL~FHDc~v-------~GcDgSill~~~~~~E~~~~~N~gL~-~~~~i~~iK~~le~~ 107 (197)
+-+++.+++.+ ++..++|.+|||+||||++ |||||||++. .|+++++|.||+ ++++|++||+++
T Consensus 18 ~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~----~E~~~~~N~gL~~~~~~i~~iK~~~--- 89 (251)
T PLN02879 18 QRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP----QELAHDANNGLDIAVRLLDPIKELF--- 89 (251)
T ss_pred HHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh----hhccCCCcCChHHHHHHHHHHHHHc---
Confidence 34577777766 4679999999999999976 8999999985 799999999999 999999999998
Q ss_pred CCCCCCHHHHHHHhhhhhhhhcCCCcccccCCCccCCCCccccCCCCCCCCCcHHHHHHHHHHCCCCccchhhhhccchh
Q 041705 108 CPGVVSCADIVALAARDAIALSNGPSYQVPTGRRDGEVSNVTLADDMPDVSDSIQQLKTKFLHNGLSEKDLVLLSGMLSL 187 (197)
Q Consensus 108 cp~~VScADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL~GaHTi 187 (197)
++|||||||+||+++||+.+|||.|+|++||+|+..+++. ++||.|+.+++++++.|+++||+++|||||+|||||
T Consensus 90 --~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~--~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaHTi 165 (251)
T PLN02879 90 --PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPE--GRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHTL 165 (251)
T ss_pred --CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcc--cCCCCCCCCHHHHHHHHHHcCCCHHHHeeeeccccc
Confidence 5899999999999999999999999999999999988655 789999999999999999999999999999999999
Q ss_pred hhhhhh
Q 041705 188 SLSLFL 193 (197)
Q Consensus 188 G~~~~~ 193 (197)
|++|+.
T Consensus 166 G~ah~~ 171 (251)
T PLN02879 166 GRCHKE 171 (251)
T ss_pred cccccc
Confidence 999985
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=1.8e-42 Score=296.09 Aligned_cols=153 Identities=31% Similarity=0.414 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHcCCchhhhhhhhhccccccc--------CCCcceeecCCCCcccccCCCCCC-chhHHHHHHHHHhhhh
Q 041705 37 IVSSVVQDAVVSDPNLAAVLLRLHFHDCFVE--------GCDGSILIENGPNAEKHAFGHQGV-GGFEVIEKAKARSEDA 107 (197)
Q Consensus 37 iV~~~v~~~~~~~~~~a~~~lRL~FHDc~v~--------GcDgSill~~~~~~E~~~~~N~gL-~~~~~i~~iK~~le~~ 107 (197)
.|++.|++.+.+++.+++++|||+||||++. ||||||+++ .|+++++|.|| +++++|++||.++|.
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~----~e~~~~~N~~l~~~~~~l~~ik~~~~~- 76 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE----PELDRPENGGLDKALRALEPIKSAYDG- 76 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc----ccccCcccccHHHHHHHHHHHHHHcCC-
Confidence 4788999999999999999999999999996 999999998 59999999997 799999999999998
Q ss_pred CCCCCCHHHHHHHhhhhhhhhc--CCCcccccCCCccCCCCc--cccC-CCCCCCCCcHHHHHHHHHHCCCCccchhhhh
Q 041705 108 CPGVVSCADIVALAARDAIALS--NGPSYQVPTGRRDGEVSN--VTLA-DDMPDVSDSIQQLKTKFLHNGLSEKDLVLLS 182 (197)
Q Consensus 108 cp~~VScADiialAa~~av~~~--GGP~~~v~~GR~D~~~s~--~~~~-~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL~ 182 (197)
|++|||||||++|+++||+.+ |||.|++++||+|+..++ ...+ +++|.|+.+++++++.|+++||+++|||||+
T Consensus 77 -~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~ 155 (255)
T cd00314 77 -GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALS 155 (255)
T ss_pred -CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhc
Confidence 889999999999999999999 999999999999999653 2223 7789999999999999999999999999999
Q ss_pred -ccchh-hhhhhhhh
Q 041705 183 -GMLSL-SLSLFLMH 195 (197)
Q Consensus 183 -GaHTi-G~~~~~~~ 195 (197)
|+||+ |++|+.+.
T Consensus 156 ~GaHti~G~~~~~~~ 170 (255)
T cd00314 156 AGAHTLGGKNHGDLL 170 (255)
T ss_pred cCCeeccCcccCCCC
Confidence 99999 99998764
No 10
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=1e-42 Score=297.83 Aligned_cols=139 Identities=22% Similarity=0.218 Sum_probs=120.5
Q ss_pred HHHHHcCCchhhhhhhhhccccc-------ccCCCcceeecCCCCcccc-cCCCCCCchhHHHHHHHHHhhhhCCCCCCH
Q 041705 43 QDAVVSDPNLAAVLLRLHFHDCF-------VEGCDGSILIENGPNAEKH-AFGHQGVGGFEVIEKAKARSEDACPGVVSC 114 (197)
Q Consensus 43 ~~~~~~~~~~a~~~lRL~FHDc~-------v~GcDgSill~~~~~~E~~-~~~N~gL~~~~~i~~iK~~le~~cp~~VSc 114 (197)
.+....+++.++.+|||+||||+ ++||||||+++.. ..|+. .+.|.+|++|+.|+. .+|||
T Consensus 32 ~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~-~~En~G~~~n~~l~~~~~i~~----------~~VSc 100 (264)
T cd08201 32 DCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD-RPENIGSGFNTTLNFFVNFYS----------PRSSM 100 (264)
T ss_pred ccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC-ChhhccCchhhccccceeecc----------CccCH
Confidence 33445788999999999999999 7999999999743 26665 445556777766543 26999
Q ss_pred HHHHHHhhhhhhhhcCCCcccccCCCccCCCCccccCCCCCCCCCcHHHHHHHHHHCCCCccchhhhhc-cchhhhhhhh
Q 041705 115 ADIVALAARDAIALSNGPSYQVPTGRRDGEVSNVTLADDMPDVSDSIQQLKTKFLHNGLSEKDLVLLSG-MLSLSLSLFL 193 (197)
Q Consensus 115 ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL~G-aHTiG~~~~~ 193 (197)
|||||||+++||+.+|||.|+|++||+|+..+.+. + ||.|+.+++++++.|+++||+++|||+|+| |||||++|+.
T Consensus 101 ADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~--g-lP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~ 177 (264)
T cd08201 101 ADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA--G-VPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHSE 177 (264)
T ss_pred HHHHHHHHHHHHHHcCCCeecccccCCCccccccc--c-CCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeecccc
Confidence 99999999999999999999999999999988766 4 999999999999999999999999999995 9999999987
Q ss_pred hh
Q 041705 194 MH 195 (197)
Q Consensus 194 ~~ 195 (197)
.+
T Consensus 178 ~f 179 (264)
T cd08201 178 DF 179 (264)
T ss_pred cc
Confidence 64
No 11
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=5.2e-34 Score=256.07 Aligned_cols=152 Identities=14% Similarity=0.173 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHcC--------Cchhhhhhhhhcccccc-------cCCC-cceeecCCCCcccccCCCCCCc-hhHHHH
Q 041705 36 SIVSSVVQDAVVSD--------PNLAAVLLRLHFHDCFV-------EGCD-GSILIENGPNAEKHAFGHQGVG-GFEVIE 98 (197)
Q Consensus 36 ~iV~~~v~~~~~~~--------~~~a~~~lRL~FHDc~v-------~GcD-gSill~~~~~~E~~~~~N~gL~-~~~~i~ 98 (197)
+.|++.+++.+... ..++|.+|||+|||+.| ||++ |+|++. +|++++.|.||. ++++++
T Consensus 45 ~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~----pe~~~~~N~gL~~a~~~L~ 120 (409)
T cd00649 45 EALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA----PLNSWPDNVNLDKARRLLW 120 (409)
T ss_pred HHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc----cccCcHhhhhHHHHHHHHH
Confidence 67899999988865 37999999999999997 8997 899998 799999999997 789999
Q ss_pred HHHHHhhhhCCCCCCHHHHHHHhhhhhhhhcCCCcccccCCCccCCCCcc------------------------------
Q 041705 99 KAKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVPTGRRDGEVSNV------------------------------ 148 (197)
Q Consensus 99 ~iK~~le~~cp~~VScADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~------------------------------ 148 (197)
+||+++ |..||+||+|+||+.+||+.+|||.|++.+||.|...+..
T Consensus 121 pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~ 196 (409)
T cd00649 121 PIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQ 196 (409)
T ss_pred HHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhhhh
Confidence 999998 4479999999999999999999999999999999965431
Q ss_pred --------ccCCCCCCCCCcHHHHHHHHHHCCCCccchhhh-hccchhhhhhhhhh
Q 041705 149 --------TLADDMPDVSDSIQQLKTKFLHNGLSEKDLVLL-SGMLSLSLSLFLMH 195 (197)
Q Consensus 149 --------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL-~GaHTiG~~~~~~~ 195 (197)
+.+..+|.|+.++++|++.|.+||||.+||||| +||||||++|+..+
T Consensus 197 mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~ 252 (409)
T cd00649 197 MGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGP 252 (409)
T ss_pred ccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccc
Confidence 222379999999999999999999999999999 59999999999643
No 12
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.97 E-value=1.5e-32 Score=260.39 Aligned_cols=160 Identities=17% Similarity=0.189 Sum_probs=137.0
Q ss_pred ccCCChhH-HHHHHHHHHHHHHcC--------Cchhhhhhhhhcccccc-------cCC-CcceeecCCCCcccccCCCC
Q 041705 27 YSETCPEA-ESIVSSVVQDAVVSD--------PNLAAVLLRLHFHDCFV-------EGC-DGSILIENGPNAEKHAFGHQ 89 (197)
Q Consensus 27 Y~~sCP~~-e~iV~~~v~~~~~~~--------~~~a~~~lRL~FHDc~v-------~Gc-DgSill~~~~~~E~~~~~N~ 89 (197)
|++-+-+. .+.|++++++.+... ..++|.+|||+||++.| ||| .|+|++. +|++++.|.
T Consensus 45 y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~----P~~sw~~N~ 120 (716)
T TIGR00198 45 YAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA----PLNSWPDNV 120 (716)
T ss_pred HHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc----cccCchhhh
Confidence 34444333 356899999988875 37999999999999998 788 5899998 799999999
Q ss_pred CCc-hhHHHHHHHHHhhhhCCCCCCHHHHHHHhhhhhhhhcCCCcccccCCCccCCCCc---------------------
Q 041705 90 GVG-GFEVIEKAKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVPTGRRDGEVSN--------------------- 147 (197)
Q Consensus 90 gL~-~~~~i~~iK~~le~~cp~~VScADiialAa~~av~~~GGP~~~v~~GR~D~~~s~--------------------- 147 (197)
+|. ++.++++||++ ||+.|||||||+||+++||+.+|||.|+|.+||+|+..+.
T Consensus 121 ~Ldka~~lL~pIk~k----yp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~ 196 (716)
T TIGR00198 121 NLDKARRLLWPIKKK----YGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRES 196 (716)
T ss_pred hHHHHHHHHHHHHHH----CCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhcccccccc
Confidence 997 78999999886 6889999999999999999999999999999999994321
Q ss_pred ----------------cccCCCCCCCCCcHHHHHHHHHHCCCCccchhhhh-ccchhhhhhhhh
Q 041705 148 ----------------VTLADDMPDVSDSIQQLKTKFLHNGLSEKDLVLLS-GMLSLSLSLFLM 194 (197)
Q Consensus 148 ----------------~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL~-GaHTiG~~~~~~ 194 (197)
+..+..+|.|..++++|++.|.++|||.+|||||+ ||||||++|+..
T Consensus 197 l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s 260 (716)
T TIGR00198 197 LENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAG 260 (716)
T ss_pred ccccchhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCc
Confidence 12223699999999999999999999999999996 999999999864
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.96 E-value=3.2e-30 Score=243.69 Aligned_cols=160 Identities=14% Similarity=0.170 Sum_probs=136.9
Q ss_pred ccCCChhH-HHHHHHHHHHHHHcC--------Cchhhhhhhhhcccccc-------cCCC-cceeecCCCCcccccCCCC
Q 041705 27 YSETCPEA-ESIVSSVVQDAVVSD--------PNLAAVLLRLHFHDCFV-------EGCD-GSILIENGPNAEKHAFGHQ 89 (197)
Q Consensus 27 Y~~sCP~~-e~iV~~~v~~~~~~~--------~~~a~~~lRL~FHDc~v-------~GcD-gSill~~~~~~E~~~~~N~ 89 (197)
|++-+-.. .+.|++++++.+... ...+|.+|||+||++.| |||+ |+|++. +|+.++.|.
T Consensus 47 y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~----pe~~w~~N~ 122 (726)
T PRK15061 47 YAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA----PLNSWPDNV 122 (726)
T ss_pred HHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCc----ccccchhhh
Confidence 34444333 356899999988865 37999999999999998 8996 899998 799999999
Q ss_pred CCc-hhHHHHHHHHHhhhhCCCCCCHHHHHHHhhhhhhhhcCCCcccccCCCccCCCCcc--------------------
Q 041705 90 GVG-GFEVIEKAKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVPTGRRDGEVSNV-------------------- 148 (197)
Q Consensus 90 gL~-~~~~i~~iK~~le~~cp~~VScADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~-------------------- 148 (197)
+|. ++.++++||+++ |..||+||+|+||+.+|||.+|||.|++.+||.|...+..
T Consensus 123 gL~ka~~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~ 198 (726)
T PRK15061 123 NLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGE 198 (726)
T ss_pred hHHHHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccc
Confidence 997 789999999998 4579999999999999999999999999999999864332
Q ss_pred -------------------ccCCCCCCCCCcHHHHHHHHHHCCCCccchhhhh-ccchhhhhhhhh
Q 041705 149 -------------------TLADDMPDVSDSIQQLKTKFLHNGLSEKDLVLLS-GMLSLSLSLFLM 194 (197)
Q Consensus 149 -------------------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL~-GaHTiG~~~~~~ 194 (197)
+.+..+|+|..++.+|++.|.+||||.+|||||+ ||||||++|+..
T Consensus 199 ~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~ 264 (726)
T PRK15061 199 RDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAG 264 (726)
T ss_pred cccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcC
Confidence 1122379999999999999999999999999995 999999999864
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=99.94 E-value=3.4e-27 Score=204.67 Aligned_cols=149 Identities=16% Similarity=0.188 Sum_probs=124.0
Q ss_pred HHHHHHHHcCCchhhhhhhhhcccccc-------cCCCcc-eeecCCCCcccccCCCCC--Cc-hhHHHHHHHHHhhhh-
Q 041705 40 SVVQDAVVSDPNLAAVLLRLHFHDCFV-------EGCDGS-ILIENGPNAEKHAFGHQG--VG-GFEVIEKAKARSEDA- 107 (197)
Q Consensus 40 ~~v~~~~~~~~~~a~~~lRL~FHDc~v-------~GcDgS-ill~~~~~~E~~~~~N~g--L~-~~~~i~~iK~~le~~- 107 (197)
+.+++.+......++.++||+||++.+ ||++|+ |+|. +|++++.|.+ |. .+.++++||+++...
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~----pe~~w~~N~~~~L~~~~~~Le~ik~~~~~~~ 92 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLA----PQKDWEVNEPEELAKVLAVLEGIQKEFNESQ 92 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCc----cccCcCccCcHHHHHHHHHHHHHHHHhcccc
Confidence 577888888888999999999999997 899999 8887 7999999998 86 789999999998421
Q ss_pred CC-CCCCHHHHHHHhhhhhhhhcCC-----CcccccCCCccCCCCccccC---CCCCCCC------------CcHHHHHH
Q 041705 108 CP-GVVSCADIVALAARDAIALSNG-----PSYQVPTGRRDGEVSNVTLA---DDMPDVS------------DSIQQLKT 166 (197)
Q Consensus 108 cp-~~VScADiialAa~~av~~~GG-----P~~~v~~GR~D~~~s~~~~~---~~lP~p~------------~~~~~l~~ 166 (197)
-+ ..||+||+|+||+..|||.+|| |.|++.+||.|...+..... ...|.+. .+.+.|++
T Consensus 93 ~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd 172 (297)
T cd08200 93 SGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEMLVD 172 (297)
T ss_pred cCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHHHH
Confidence 11 2699999999999999999999 99999999999987532211 2344332 24578999
Q ss_pred HHHHCCCCccchhhhhccc-hhhhhhh
Q 041705 167 KFLHNGLSEKDLVLLSGML-SLSLSLF 192 (197)
Q Consensus 167 ~F~~~Gl~~~dlVaL~GaH-TiG~~~~ 192 (197)
.|.++|||++|||||+||| ++|+.|.
T Consensus 173 ~f~rlglsd~EmvaL~Gg~r~lG~~~~ 199 (297)
T cd08200 173 KAQLLTLTAPEMTVLVGGLRVLGANYG 199 (297)
T ss_pred HHHhCCCChHHHhheecchhhcccCCC
Confidence 9999999999999999997 6998774
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.89 E-value=4.3e-23 Score=196.21 Aligned_cols=149 Identities=19% Similarity=0.199 Sum_probs=119.5
Q ss_pred HHHHHHHH---HHHcCCchhhhhhhhhcccccc-------cCCCcc-eeecCCCCcccccCCC--CCCc-hhHHHHHHHH
Q 041705 37 IVSSVVQD---AVVSDPNLAAVLLRLHFHDCFV-------EGCDGS-ILIENGPNAEKHAFGH--QGVG-GFEVIEKAKA 102 (197)
Q Consensus 37 iV~~~v~~---~~~~~~~~a~~~lRL~FHDc~v-------~GcDgS-ill~~~~~~E~~~~~N--~gL~-~~~~i~~iK~ 102 (197)
.|+++|.. .+....-..+.++|++||++.| ||++|+ |+|. +|++++.| .||. .++++++||+
T Consensus 429 ~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~----pe~~w~~N~p~gL~~vl~~Le~Ik~ 504 (716)
T TIGR00198 429 LSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE----PQKNWPVNEPTRLAKVLAVLEKIQA 504 (716)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc----hhcCcccCCHHHHHHHHHHHHHHHH
Confidence 34555554 3455667789999999999997 899999 8887 79999999 7996 7899999999
Q ss_pred HhhhhCCCCCCHHHHHHHhhhhhhhhc---CCC--cccccCCCccCCCCccccCCCCC---C------------CCCcHH
Q 041705 103 RSEDACPGVVSCADIVALAARDAIALS---NGP--SYQVPTGRRDGEVSNVTLADDMP---D------------VSDSIQ 162 (197)
Q Consensus 103 ~le~~cp~~VScADiialAa~~av~~~---GGP--~~~v~~GR~D~~~s~~~~~~~lP---~------------p~~~~~ 162 (197)
++.. ..||+||+|+||+..|||.+ ||| .+++.+||.|.+..........| . ......
T Consensus 505 ~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~~~~ 581 (716)
T TIGR00198 505 EFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVTPEE 581 (716)
T ss_pred HcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCCHHH
Confidence 9832 27999999999999999998 898 57999999999875322111222 1 123456
Q ss_pred HHHHHHHHCCCCccchhhhhcc-chhhhhhh
Q 041705 163 QLKTKFLHNGLSEKDLVLLSGM-LSLSLSLF 192 (197)
Q Consensus 163 ~l~~~F~~~Gl~~~dlVaL~Ga-HTiG~~~~ 192 (197)
.|++.|.++|||++|||||+|| |++|++|.
T Consensus 582 ~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~ 612 (716)
T TIGR00198 582 LLLDKAQLLTLTAPEMTVLIGGMRVLGANHG 612 (716)
T ss_pred HHHHHHHhCCCChHHHHheecchhhccccCC
Confidence 7889999999999999999998 59999885
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.88 E-value=9.9e-23 Score=193.06 Aligned_cols=149 Identities=18% Similarity=0.214 Sum_probs=123.3
Q ss_pred HHHHHHHHcCCchhhhhhhhhcccccc-------cCCCcc-eeecCCCCcccccCCCC--CCc-hhHHHHHHHHHhhhhC
Q 041705 40 SVVQDAVVSDPNLAAVLLRLHFHDCFV-------EGCDGS-ILIENGPNAEKHAFGHQ--GVG-GFEVIEKAKARSEDAC 108 (197)
Q Consensus 40 ~~v~~~~~~~~~~a~~~lRL~FHDc~v-------~GcDgS-ill~~~~~~E~~~~~N~--gL~-~~~~i~~iK~~le~~c 108 (197)
..++..+....-..+.++|++||++.+ ||++|+ |+|. +|++++.|. +|. .++++++||+++...-
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~----Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~~ 517 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA----PQKDWEVNEPAQLAKVLAVLEGIQAEFNAAQ 517 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc----cccCccccCHHHHHHHHHHHHHHHHHHhhcc
Confidence 567777777777899999999999997 899999 9998 799999999 886 7899999999985421
Q ss_pred --CCCCCHHHHHHHhhhhhhhhc---CC--CcccccCCCccCCCCccccC---CCCCCCC------------CcHHHHHH
Q 041705 109 --PGVVSCADIVALAARDAIALS---NG--PSYQVPTGRRDGEVSNVTLA---DDMPDVS------------DSIQQLKT 166 (197)
Q Consensus 109 --p~~VScADiialAa~~av~~~---GG--P~~~v~~GR~D~~~s~~~~~---~~lP~p~------------~~~~~l~~ 166 (197)
...||+||+|+||+..|||.+ || |.|++.+||.|.+....... ...|... ...+.|++
T Consensus 518 ~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d 597 (726)
T PRK15061 518 SGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEELLVD 597 (726)
T ss_pred CCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHHHHHH
Confidence 136999999999999999998 58 99999999999987532211 2456532 23478999
Q ss_pred HHHHCCCCccchhhhhccc-hhhhhhh
Q 041705 167 KFLHNGLSEKDLVLLSGML-SLSLSLF 192 (197)
Q Consensus 167 ~F~~~Gl~~~dlVaL~GaH-TiG~~~~ 192 (197)
.|.++|||++|||||+||| ++|+.|-
T Consensus 598 ~a~~lglt~~EmvaL~Gg~r~Lg~~~~ 624 (726)
T PRK15061 598 KAQLLTLTAPEMTVLVGGLRVLGANYG 624 (726)
T ss_pred HHHhCCCChHHHhheecchhhcccCCC
Confidence 9999999999999999997 7887763
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.2e-20 Score=171.27 Aligned_cols=149 Identities=13% Similarity=0.163 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHcCC--------chhhhhhhhhcccccc--------cCCCcceeecCCCCcccccCCCCCCc-hhHHHHH
Q 041705 37 IVSSVVQDAVVSDP--------NLAAVLLRLHFHDCFV--------EGCDGSILIENGPNAEKHAFGHQGVG-GFEVIEK 99 (197)
Q Consensus 37 iV~~~v~~~~~~~~--------~~a~~~lRL~FHDc~v--------~GcDgSill~~~~~~E~~~~~N~gL~-~~~~i~~ 99 (197)
-|+..++..+.... ...+.+|||+||-+++ ++-.|..++. ++..+|.|.+|+ ++.++.+
T Consensus 71 Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFa----PlnSWPDN~nLDKarRLLWP 146 (730)
T COG0376 71 AVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA----PLNSWPDNANLDKARRLLWP 146 (730)
T ss_pred HHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceecc----cccCCCcccchHHHHHHhhh
Confidence 35555666555543 4789999999999997 3445566776 677899999997 8999999
Q ss_pred HHHHhhhhCCCCCCHHHHHHHhhhhhhhhcCCCcccccCCCccCCCCcc-------------------------------
Q 041705 100 AKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVPTGRRDGEVSNV------------------------------- 148 (197)
Q Consensus 100 iK~~le~~cp~~VScADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~------------------------------- 148 (197)
||+++ +..||+||++.|++.+|++.+|.+.+.+..||.|--.+..
T Consensus 147 IKkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqM 222 (730)
T COG0376 147 IKKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQM 222 (730)
T ss_pred HhHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhhee
Confidence 99998 4689999999999999999999999999999999765544
Q ss_pred -------ccCCCCCCCCCcHHHHHHHHHHCCCCccchhhhh-ccchhhhhhhh
Q 041705 149 -------TLADDMPDVSDSIQQLKTKFLHNGLSEKDLVLLS-GMLSLSLSLFL 193 (197)
Q Consensus 149 -------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL~-GaHTiG~~~~~ 193 (197)
++++..|+|-.+..+++..|++|+++.+|.|||+ |+||+|.+|-.
T Consensus 223 GLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGa 275 (730)
T COG0376 223 GLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGA 275 (730)
T ss_pred eeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCC
Confidence 3346689999999999999999999999999999 79999999864
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=98.04 E-value=8.8e-06 Score=76.08 Aligned_cols=137 Identities=19% Similarity=0.247 Sum_probs=98.1
Q ss_pred HHHHHHHHcCCchhhhhhhhhcccccc-------cCCCcc-eeecCCCCcccccCCCC--CCc-hhHHHHHHHHHhhhhC
Q 041705 40 SVVQDAVVSDPNLAAVLLRLHFHDCFV-------EGCDGS-ILIENGPNAEKHAFGHQ--GVG-GFEVIEKAKARSEDAC 108 (197)
Q Consensus 40 ~~v~~~~~~~~~~a~~~lRL~FHDc~v-------~GcDgS-ill~~~~~~E~~~~~N~--gL~-~~~~i~~iK~~le~~c 108 (197)
..++..+....-....++-.+|--+-+ +|.+|. |+|. +.++++.|. -|. -+.+++.|++.+.
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa----PqkdWevN~P~~l~kvl~~le~iq~~fn--- 524 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA----PQKDWEVNQPAELAKVLAVLEKIQKEFN--- 524 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec----ccccCCCCCHHHHHHHHHHHHHHHHHhc---
Confidence 456666666666778888888887766 788887 6676 688999886 333 4678888888875
Q ss_pred CCCCCHHHHHHHhhhhhhhhc---CCC--cccccCCCccCCCCccccC--CCC-C------------CCCCcHHHHHHHH
Q 041705 109 PGVVSCADIVALAARDAIALS---NGP--SYQVPTGRRDGEVSNVTLA--DDM-P------------DVSDSIQQLKTKF 168 (197)
Q Consensus 109 p~~VScADiialAa~~av~~~---GGP--~~~v~~GR~D~~~s~~~~~--~~l-P------------~p~~~~~~l~~~F 168 (197)
..||.||+|+|++..+|+.. .|- .+++-+||.|....-.... ..| | ....+-.-|+++=
T Consensus 525 -kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkA 603 (730)
T COG0376 525 -KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKA 603 (730)
T ss_pred -CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHHHH
Confidence 36999999999999999874 454 4577899999865422111 001 1 1112334466777
Q ss_pred HHCCCCccchhhhhcc
Q 041705 169 LHNGLSEKDLVLLSGM 184 (197)
Q Consensus 169 ~~~Gl~~~dlVaL~Ga 184 (197)
+-.+|+.-||++|.|+
T Consensus 604 qlL~LtapemtVLiGG 619 (730)
T COG0376 604 QLLTLTAPEMTVLIGG 619 (730)
T ss_pred HHhccCCccceEEEcc
Confidence 7789999999999976
No 19
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.31 E-value=18 Score=25.36 Aligned_cols=29 Identities=10% Similarity=0.298 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCchhhhhhhhhcccc
Q 041705 36 SIVSSVVQDAVVSDPNLAAVLLRLHFHDC 64 (197)
Q Consensus 36 ~iV~~~v~~~~~~~~~~a~~~lRL~FHDc 64 (197)
-|.|+.+++.++++|..-...||+-+--.
T Consensus 23 fiark~~~k~lk~NPpine~~iR~M~~qm 51 (71)
T COG3763 23 FIARKQMKKQLKDNPPINEEMIRMMMAQM 51 (71)
T ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 47899999999999999999999877544
No 20
>PF14919 MTBP_mid: MDM2-binding
Probab=43.03 E-value=29 Score=31.30 Aligned_cols=68 Identities=25% Similarity=0.270 Sum_probs=46.8
Q ss_pred cccCCCCCCchhHHHHHHHHHhhhhCCCCCCHHHHHHHhhhhhhhhcCCCcccccCCCccCCCCccccCCCCCCCCCcHH
Q 041705 83 KHAFGHQGVGGFEVIEKAKARSEDACPGVVSCADIVALAARDAIALSNGPSYQVPTGRRDGEVSNVTLADDMPDVSDSIQ 162 (197)
Q Consensus 83 ~~~~~N~gL~~~~~i~~iK~~le~~cp~~VScADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~ 162 (197)
.+||+-.-|+.++.++++|.+.... .+| | .-.-.+|++|+...+.. -.++.
T Consensus 264 ~eWPER~VLQNlEn~ek~kQK~R~~---~l~----------------~--SseqLLG~Kdg~r~s~t--------LLDAk 314 (342)
T PF14919_consen 264 LEWPERHVLQNLENFEKAKQKMRTG---SLP----------------R--SSEQLLGHKDGQRDSVT--------LLDAK 314 (342)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHhcc---cCC----------------C--CHHHhcCCCCCCCCCcc--------cccHH
Confidence 3455544566789999999887531 111 1 12456899999764433 34889
Q ss_pred HHHHHHHHCCCCccchh
Q 041705 163 QLKTKFLHNGLSEKDLV 179 (197)
Q Consensus 163 ~l~~~F~~~Gl~~~dlV 179 (197)
+++.+|..-||-..|+-
T Consensus 315 ELLK~FT~dGlPvgDLQ 331 (342)
T PF14919_consen 315 ELLKYFTSDGLPVGDLQ 331 (342)
T ss_pred HHHhhcCCCCcccCcCc
Confidence 99999999999888864
No 21
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=42.60 E-value=14 Score=29.17 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=28.5
Q ss_pred CcHHHHHHHHHHCCCCccch-hhhhccchhhhhhhhh
Q 041705 159 DSIQQLKTKFLHNGLSEKDL-VLLSGMLSLSLSLFLM 194 (197)
Q Consensus 159 ~~~~~l~~~F~~~Gl~~~dl-VaL~GaHTiG~~~~~~ 194 (197)
+++.+.+-.|+++|+++.++ |.|--+|-||+++++.
T Consensus 31 ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r~v~ 67 (151)
T KOG0400|consen 31 DDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVRFVT 67 (151)
T ss_pred HHHHHHHHHHHHcCCChhHceeeeecccCcchhheec
Confidence 45666667899999999886 6666999999988753
No 22
>PTZ00411 transaldolase-like protein; Provisional
Probab=41.85 E-value=18 Score=32.65 Aligned_cols=59 Identities=14% Similarity=0.058 Sum_probs=38.4
Q ss_pred cCCCcccccCCCccCCCCccccC-CCCCC---CCCcHHHHHHHHHHCCCC----------ccchhhhhccchh
Q 041705 129 SNGPSYQVPTGRRDGEVSNVTLA-DDMPD---VSDSIQQLKTKFLHNGLS----------EKDLVLLSGMLSL 187 (197)
Q Consensus 129 ~GGP~~~v~~GR~D~~~s~~~~~-~~lP~---p~~~~~~l~~~F~~~Gl~----------~~dlVaL~GaHTi 187 (197)
+|-..+..++||-+...-.+... ...+. +-..+.++.++|++.|+. .+|+..|.|+|.+
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~laG~D~l 252 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCDKL 252 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHHHCCCEE
Confidence 58888999999986532222111 11111 123577888899988874 5778889999854
No 23
>PRK01844 hypothetical protein; Provisional
Probab=38.28 E-value=34 Score=24.11 Aligned_cols=28 Identities=11% Similarity=0.300 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCCchhhhhhhhhcccc
Q 041705 37 IVSSVVQDAVVSDPNLAAVLLRLHFHDC 64 (197)
Q Consensus 37 iV~~~v~~~~~~~~~~a~~~lRL~FHDc 64 (197)
+.|..+++.++++|..-...||.-+--.
T Consensus 24 ~ark~~~k~lk~NPpine~mir~Mm~QM 51 (72)
T PRK01844 24 IARKYMMNYLQKNPPINEQMLKMMMMQM 51 (72)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 4788999999999999999999766443
No 24
>PRK12346 transaldolase A; Provisional
Probab=36.89 E-value=33 Score=30.71 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=45.3
Q ss_pred CCHHHHHHHhhhhhh--hhcCCCcccccCCCccCCCCccccCCCCCC----CCCcHHHHHHHHHHCCCC----------c
Q 041705 112 VSCADIVALAARDAI--ALSNGPSYQVPTGRRDGEVSNVTLADDMPD----VSDSIQQLKTKFLHNGLS----------E 175 (197)
Q Consensus 112 VScADiialAa~~av--~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~----p~~~~~~l~~~F~~~Gl~----------~ 175 (197)
|+|-=.+.|....++ ...|-..+..++||-|.-.-........+. +-..+.++.++|++.|+. .
T Consensus 150 I~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~ASfRn~ 229 (316)
T PRK12346 150 INCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETIVMGASFRRT 229 (316)
T ss_pred CceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcEEEecccCCH
Confidence 444333344443333 336888999999998763211110011111 234678888999988864 5
Q ss_pred cchhhhhccchh
Q 041705 176 KDLVLLSGMLSL 187 (197)
Q Consensus 176 ~dlVaL~GaHTi 187 (197)
+|+.+|.|+|.+
T Consensus 230 ~qi~alaG~d~l 241 (316)
T PRK12346 230 EQILALAGCDRL 241 (316)
T ss_pred HHHHHHhCCCEE
Confidence 788889999844
No 25
>PF08782 c-SKI_SMAD_bind: c-SKI Smad4 binding domain; InterPro: IPR014890 c-SKI is an oncoprotein that inhibits TGF-beta signalling through interaction with Smad proteins []. This protein binds to Smad4 [].; GO: 0005634 nucleus; PDB: 1MR1_C.
Probab=32.68 E-value=16 Score=27.10 Aligned_cols=14 Identities=50% Similarity=1.424 Sum_probs=9.6
Q ss_pred hcccccccCCCccee
Q 041705 60 HFHDCFVEGCDGSIL 74 (197)
Q Consensus 60 ~FHDc~v~GcDgSil 74 (197)
.+|+|+ +||.|+..
T Consensus 4 V~HeC~-g~c~G~f~ 17 (96)
T PF08782_consen 4 VYHECF-GGCRGSFI 17 (96)
T ss_dssp EEE-ST-T-EEEEE-
T ss_pred eEEeec-CccceEec
Confidence 479998 89999986
No 26
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=31.13 E-value=41 Score=30.04 Aligned_cols=58 Identities=10% Similarity=0.004 Sum_probs=37.1
Q ss_pred cCCCcccccCCCccCCCCccccCCCCC----CCCCcHHHHHHHHHHCCCC----------ccchhhhhccch
Q 041705 129 SNGPSYQVPTGRRDGEVSNVTLADDMP----DVSDSIQQLKTKFLHNGLS----------EKDLVLLSGMLS 186 (197)
Q Consensus 129 ~GGP~~~v~~GR~D~~~s~~~~~~~lP----~p~~~~~~l~~~F~~~Gl~----------~~dlVaL~GaHT 186 (197)
.|-..+..++||-|...-........+ ++-..+.++.++|++.|++ .+|+.+|.|+|.
T Consensus 168 AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~vmaASfRn~~~v~~laG~d~ 239 (313)
T cd00957 168 AGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGYKTKVMGASFRNIGQILALAGCDY 239 (313)
T ss_pred cCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcCCCcEEEecccCCHHHHHHHhCCCe
Confidence 588889999999875321111000111 1234688888999998875 567778888884
No 27
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=30.97 E-value=58 Score=29.95 Aligned_cols=59 Identities=19% Similarity=0.137 Sum_probs=38.0
Q ss_pred cCCCcccccCCCccCCCCccccCCCCCCC----CCcHHHHHHHHHHCCCC----------ccchhhhhccchh
Q 041705 129 SNGPSYQVPTGRRDGEVSNVTLADDMPDV----SDSIQQLKTKFLHNGLS----------EKDLVLLSGMLSL 187 (197)
Q Consensus 129 ~GGP~~~v~~GR~D~~~s~~~~~~~lP~p----~~~~~~l~~~F~~~Gl~----------~~dlVaL~GaHTi 187 (197)
.|-..+..++||.|.-.-........|.. -..+.++.++|++.|+. .+++..|.|+|.+
T Consensus 174 AGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~Im~ASfRn~~~v~~laG~d~~ 246 (391)
T PRK12309 174 AGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFGYKTEVMGASFRNIGEIIELAGCDLL 246 (391)
T ss_pred cCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcCCCcEEEecccCCHHHHHHHHCCCee
Confidence 58889999999987622111100113322 23588888899988764 5677888888843
No 28
>KOG3803 consensus Transcription factor containing C2HC type Zn finger [Transcription]
Probab=30.54 E-value=31 Score=33.98 Aligned_cols=35 Identities=31% Similarity=0.559 Sum_probs=23.2
Q ss_pred CCChhHHHHHHHHHHHHHHcCCchhhhhhhhhcccccccCCCcceeec
Q 041705 29 ETCPEAESIVSSVVQDAVVSDPNLAAVLLRLHFHDCFVEGCDGSILIE 76 (197)
Q Consensus 29 ~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRL~FHDc~v~GcDgSill~ 76 (197)
.-||-+|+++|..|...-.. --|-+-|||||=-+.
T Consensus 670 sgcpladks~Rslma~~sqe-------------LkCPTPGCDGSGHiT 704 (968)
T KOG3803|consen 670 SGCPLADKSLRSLMAAGSQE-------------LKCPTPGCDGSGHIT 704 (968)
T ss_pred cCCchhHHHHHHHHhccccc-------------ccCCCCCCCCCCccc
Confidence 35888888877665443111 138889999996554
No 29
>PRK00523 hypothetical protein; Provisional
Probab=28.87 E-value=59 Score=22.93 Aligned_cols=28 Identities=7% Similarity=0.344 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCCchhhhhhhhhcccc
Q 041705 37 IVSSVVQDAVVSDPNLAAVLLRLHFHDC 64 (197)
Q Consensus 37 iV~~~v~~~~~~~~~~a~~~lRL~FHDc 64 (197)
+.|..+++.+.+||..-...||.-+--.
T Consensus 25 iark~~~k~l~~NPpine~mir~M~~QM 52 (72)
T PRK00523 25 VSKKMFKKQIRENPPITENMIRAMYMQM 52 (72)
T ss_pred HHHHHHHHHHHHCcCCCHHHHHHHHHHh
Confidence 4788999999999999999999766443
No 30
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=28.28 E-value=40 Score=24.07 Aligned_cols=25 Identities=32% Similarity=0.262 Sum_probs=17.6
Q ss_pred HHHHHHHHHHCCCCccchhhhhccc
Q 041705 161 IQQLKTKFLHNGLSEKDLVLLSGML 185 (197)
Q Consensus 161 ~~~l~~~F~~~Gl~~~dlVaL~GaH 185 (197)
-+.|-..|++.||+.+||-.++-+.
T Consensus 10 GDtLs~iF~~~gls~~dl~~v~~~~ 34 (85)
T PF04225_consen 10 GDTLSTIFRRAGLSASDLYAVLEAD 34 (85)
T ss_dssp T--HHHHHHHTT--HHHHHHHHHHG
T ss_pred CCcHHHHHHHcCCCHHHHHHHHhcc
Confidence 3567889999999999999998544
No 31
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=28.07 E-value=46 Score=28.58 Aligned_cols=59 Identities=7% Similarity=-0.122 Sum_probs=35.7
Q ss_pred cCCCcccccCCCccCCCCccccC-CCCCC---CCCcHHHHHHHHHHCCCC----------ccchhhhhccchh
Q 041705 129 SNGPSYQVPTGRRDGEVSNVTLA-DDMPD---VSDSIQQLKTKFLHNGLS----------EKDLVLLSGMLSL 187 (197)
Q Consensus 129 ~GGP~~~v~~GR~D~~~s~~~~~-~~lP~---p~~~~~~l~~~F~~~Gl~----------~~dlVaL~GaHTi 187 (197)
+|..++..++||.|...-..... +.=|. +-..+.++.+.|++.|.+ .+++..|.|+|++
T Consensus 159 Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~tkiL~AS~r~~~~v~~l~G~d~v 231 (252)
T cd00439 159 AGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKKQRVLWASFSDTLYVAPLIGCDTV 231 (252)
T ss_pred cCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCCCeEEEEeeCCHHHHHHhhCCCee
Confidence 57888899999998754322211 11111 122355777788777764 4566667788754
No 32
>PF03744 BioW: 6-carboxyhexanoate--CoA ligase; InterPro: IPR005499 This family contains the enzyme 6-carboxyhexanoate--CoA ligase 6.2.1.14 from EC. This enzyme is involved in the first step of biotin synthesis, where it converts pimelate into pimeloyl-CoA []. The enzyme requires magnesium as a cofactor and forms a homodimer [].; GO: 0009102 biotin biosynthetic process
Probab=27.04 E-value=1.2e+02 Score=26.08 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=42.0
Q ss_pred cCCCcceeecCCCCccc-ccCCCCCCc--hhHHHHH--HHHHhhhhCCCCCCHHHHHHHhhhhhh
Q 041705 67 EGCDGSILIENGPNAEK-HAFGHQGVG--GFEVIEK--AKARSEDACPGVVSCADIVALAARDAI 126 (197)
Q Consensus 67 ~GcDgSill~~~~~~E~-~~~~N~gL~--~~~~i~~--iK~~le~~cp~~VScADiialAa~~av 126 (197)
.+--|.+|++... .|+ +...++|+| .+|.-+. +|+.+......+--.-|.|+||+.++-
T Consensus 107 ~~mRGA~Lld~~t-GeRLe~d~~RGVRvs~mD~~~~~~~~~~l~~~~~~~~r~~EAL~LAsKV~~ 170 (239)
T PF03744_consen 107 SNMRGAMLLDADT-GERLEPDGERGVRVSRMDWEDRDRLKEKLLSNGLSKERFREALALASKVAA 170 (239)
T ss_pred CCccceEEEeCCC-CcCCCCCCCCCEEEEeecCCCcchhHHHHhhcCCCCchHHHHHHHHHHHhc
Confidence 5788999998654 454 334677887 4555444 777776655567778999999998764
No 33
>PF09533 DUF2380: Predicted lipoprotein of unknown function (DUF2380); InterPro: IPR011755 This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N terminus; the others are predicted lipoproteins. The function is unknown.
Probab=24.93 E-value=72 Score=26.45 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=21.0
Q ss_pred HHHHHHHHHHCCCCccchhhhhccc
Q 041705 161 IQQLKTKFLHNGLSEKDLVLLSGML 185 (197)
Q Consensus 161 ~~~l~~~F~~~Gl~~~dlVaL~GaH 185 (197)
..++..+|.++|+++.|-+.++..|
T Consensus 107 a~~la~wF~~~Gi~IHd~ti~Ip~~ 131 (188)
T PF09533_consen 107 AEELAEWFERRGIDIHDYTIPIPRD 131 (188)
T ss_pred cHHHHHHHHHcCCChhheeEecCHH
Confidence 4578999999999999988877654
No 34
>PRK05269 transaldolase B; Provisional
Probab=23.99 E-value=49 Score=29.57 Aligned_cols=59 Identities=15% Similarity=0.019 Sum_probs=38.0
Q ss_pred cCCCcccccCCCccCCCCcccc----CCCCCCCCCcHHHHHHHHHHCCCC----------ccchhhhhccchh
Q 041705 129 SNGPSYQVPTGRRDGEVSNVTL----ADDMPDVSDSIQQLKTKFLHNGLS----------EKDLVLLSGMLSL 187 (197)
Q Consensus 129 ~GGP~~~v~~GR~D~~~s~~~~----~~~lP~p~~~~~~l~~~F~~~Gl~----------~~dlVaL~GaHTi 187 (197)
+|-..+..++||-|...-.... ...--++-..+.++.++|++.|+. ..++..|.|+|++
T Consensus 170 AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im~ASfrn~~~v~~laG~d~v 242 (318)
T PRK05269 170 AGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVVMGASFRNTGQILELAGCDRL 242 (318)
T ss_pred cCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceEEeeccCCHHHHHHHhCCCeE
Confidence 5888899999998753111100 000111344688888999998875 4667778888854
No 35
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=23.86 E-value=51 Score=21.80 Aligned_cols=30 Identities=33% Similarity=0.500 Sum_probs=21.0
Q ss_pred HHHHhhh---hhhhhcCCCcccccCCCccCCCC
Q 041705 117 IVALAAR---DAIALSNGPSYQVPTGRRDGEVS 146 (197)
Q Consensus 117 iialAa~---~av~~~GGP~~~v~~GR~D~~~s 146 (197)
++++|+- |-...+.||.+++-+||--.+.|
T Consensus 9 ~l~La~CqT~D~lAtckGpiFpLNVgrWqptps 41 (55)
T PRK13859 9 ALALAGCQTNDTLASCKGPIFPLNVGRWQPTPS 41 (55)
T ss_pred HHHHHhccccCccccccCCccccccccccCChh
Confidence 4555553 44556899999999999765444
No 36
>PF01530 zf-C2HC: Zinc finger, C2HC type; InterPro: IPR002515 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (C2HC) type zinc finger domain found in eukaryotes. Proteins containing these domains include: MYST family histone acetyltransferases [, [] Myelin transcription factor Myt1 [] Suppressor of tumourigenicity protein 18 (ST18) [] More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2CS8_A 1PXE_A 2JX1_A 2JYD_A.
Probab=23.38 E-value=37 Score=20.04 Aligned_cols=13 Identities=54% Similarity=0.930 Sum_probs=8.2
Q ss_pred ccccCCCcceeec
Q 041705 64 CFVEGCDGSILIE 76 (197)
Q Consensus 64 c~v~GcDgSill~ 76 (197)
|-+-||||+=-+.
T Consensus 4 CPtpGCdg~GHi~ 16 (31)
T PF01530_consen 4 CPTPGCDGSGHIT 16 (31)
T ss_dssp SSSTT--SCSTTT
T ss_pred CCCCCCCcccccc
Confidence 6788999996554
No 37
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=21.29 E-value=75 Score=28.46 Aligned_cols=60 Identities=13% Similarity=0.089 Sum_probs=38.7
Q ss_pred hcCCCcccccCCCccCCCCcccc----CCCCCCCCCcHHHHHHHHHHCCCC----------ccchhhhhccchh
Q 041705 128 LSNGPSYQVPTGRRDGEVSNVTL----ADDMPDVSDSIQQLKTKFLHNGLS----------EKDLVLLSGMLSL 187 (197)
Q Consensus 128 ~~GGP~~~v~~GR~D~~~s~~~~----~~~lP~p~~~~~~l~~~F~~~Gl~----------~~dlVaL~GaHTi 187 (197)
.+|-..+..++||.|.-.-.... ....-++-..+.++.++|++.|+. .+|+.+|.|+|.+
T Consensus 167 ~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qv~~laG~d~~ 240 (317)
T TIGR00874 167 EAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASFRNKEEILALAGCDRL 240 (317)
T ss_pred HcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEEeeccCCHHHHHHHHCCCeE
Confidence 35888999999998662111110 001112345788888999998875 5677888888843
No 38
>PF06585 JHBP: Haemolymph juvenile hormone binding protein (JHBP); InterPro: IPR010562 This family consists of several insect specific haemolymph juvenile hormone binding proteins (JHBP). Juvenile hormone (JH) has a profound effect on insects. It regulates embryogenesis, maintains the status quo of larva development and stimulates reproductive maturation in the adult forms. JH is transported from the sites of its synthesis to target tissues by a haemolymph carrier called juvenile hormone-binding protein (JHBP). JHBP protects the JH molecules from hydrolysis by non-specific esterases present in the insect haemolymph []. The crystal structure of the JHBP from Galleria mellonella (Wax moth) shows an unusual fold consisting of a long alpha-helix wrapped in a much curved antiparallel beta-sheet. The folding pattern for this structure closely resembles that found in some tandem-repeat mammalian lipid-binding and bactericidal permeability-increasing proteins, with a similar organisation of the major cavity and a disulphide bond linking the long helix and the beta-sheet. It would appear that JHBP forms two cavities, only one of which, the one near the N- and C-termini, binds the hormone; binding induces a conformational change, of unknown significance [, ].; PDB: 3A1Z_D 3AOS_B 3AOT_A 2RQF_A 2RCK_A 3E8W_A 3E8T_A.
Probab=21.07 E-value=77 Score=26.27 Aligned_cols=48 Identities=15% Similarity=0.317 Sum_probs=11.6
Q ss_pred ChhHHHHHHHHHHHHhhccCCCC-cCcccCCC----hhHHHHHHHHHHHHHHc
Q 041705 1 MALFYALLFALVFLIRYSAGQLK-IGFYSETC----PEAESIVSSVVQDAVVS 48 (197)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~L~-~~fY~~sC----P~~e~iV~~~v~~~~~~ 48 (197)
|+.+.+++++++++...+.+.+. .-=|-+.| |+.++-+++.+++....
T Consensus 1 M~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~C~~~~~~~~~cl~~~~~~~~~~ 53 (248)
T PF06585_consen 1 MKLLVLFFLLVLVFSVASSAALQELPSYIKPCKRSDPNLNECLRESIENFRPY 53 (248)
T ss_dssp ----------------------S--S-S---BBTT----HHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhcccccCCcccCcCCCCCccHHHHHHHHHHHHHHh
Confidence 66655444444443322222222 22344566 55677787777776655
No 39
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=20.42 E-value=71 Score=26.90 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=24.4
Q ss_pred ccccc----cCCCcceeecCCCCcccccCCCCCCchhHHHHHHHHHhhhhC
Q 041705 62 HDCFV----EGCDGSILIENGPNAEKHAFGHQGVGGFEVIEKAKARSEDAC 108 (197)
Q Consensus 62 HDc~v----~GcDgSill~~~~~~E~~~~~N~gL~~~~~i~~iK~~le~~c 108 (197)
|||.+ +|.-+|+|..++.. + .-|+.+-.++.++++.|
T Consensus 82 fDaItkAyyrgaqa~vLVFSTTD----r------~SFea~~~w~~kv~~e~ 122 (246)
T KOG4252|consen 82 FDAITKAYYRGAQASVLVFSTTD----R------YSFEATLEWYNKVQKET 122 (246)
T ss_pred HHHHHHHHhccccceEEEEeccc----H------HHHHHHHHHHHHHHHHh
Confidence 67776 79999999876542 0 13555666666666655
Done!