BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041711
(210 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 157 RCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTL 202
+C ICL EG++V L C H+ H+ C+ +WL+T CP CR +
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 153 LGQERCV-ICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLP 203
+GQE C IC E+ +GD L C H H+ C+ WL CP CR P
Sbjct: 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 148 GSGLILGQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTL 202
GSGL C +C E+++ G+ V L C+H+ H CI+ WL ++CP CR +L
Sbjct: 13 GSGL-----ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 156 ERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTL 202
E C +CLE+F DE+ C H HR C++KWL CP C +
Sbjct: 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 40.8 bits (94), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 154 GQERCVICLEEFSE----GDEVISLQCSHVHHRHCILKWLVTGNNCPTCR 199
G C IC++ +SE G ++S +C HV C+ L N CPTCR
Sbjct: 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 63
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 158 CVICLEEFSEGDEVISL-QCSHVHHRHCILKWLVTGNNCPTCRFTL 202
C +CL E +G+E L +C H H C+ WL + + CP CR T+
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 40.4 bits (93), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 158 CVICLEEFSE----GDEVISLQCSHVHHRHCILKWLVTGNNCPTCR 199
C IC++ +SE G ++S +C HV C+ L N CPTCR
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 51
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 155 QERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCR 199
Q CV+C+ +F + L C+H H C+ KWL CP CR
Sbjct: 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 154 GQERCVICLEEFSE----GDEVISLQCSHVHHRHCILKWLVTGNNCPTCR 199
G C IC++ +SE G ++S +C HV C+ L N CPTCR
Sbjct: 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 58
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 154 GQERCVICLEEFSE----GDEVISLQCSHVHHRHCILKWLVTGNNCPTCR 199
G C IC++ +SE G ++S +C HV C+ L N CPTCR
Sbjct: 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 55
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 154 GQERCVICLEEFSE----GDEVISLQCSHVHHRHCILKWLVTGNNCPTCR 199
G C IC++ +SE G ++S +C HV C+ L N CPTCR
Sbjct: 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 120
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 157 RCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLPCTT 206
+C+IC E F E ++L C+H +CI +W+ CP CR + T
Sbjct: 55 QCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 144 ILEEGSGLILGQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLP 203
+L + ++ + +C+IC E F E ++L C+H +CI +W+ CP CR +
Sbjct: 42 VLSHMNDVLENELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98
Query: 204 CTT 206
T
Sbjct: 99 SKT 101
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 157 RCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLPCTT 206
+C+IC E F E ++L C+H +CI +W+ CP CR + T
Sbjct: 66 QCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 112
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 157 RCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTL 202
RC IC E F+ +I QCSH + CI K+L CPTC T+
Sbjct: 24 RCGICFEYFNIA--MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 156 ERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCR 199
ERC ICLE+ S + ++L C H CI +W+ CP C+
Sbjct: 6 ERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 33.9 bits (76), Expect = 0.067, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 154 GQERCVICLEEFSEGDEVIS-LQCSHVHHRHCILKWLVTGNNCPTC 198
G C ICLE+ V L C H+ HR C + L G CP C
Sbjct: 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 33.5 bits (75), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 155 QERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTL 202
+E C IC++ G + L C+H + CI KW NCP CR +
Sbjct: 15 EEECCICMD----GRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58
>pdb|3N91|A Chain A, Crystal Structure Of A Structural Genomics, Unknown
Function (Bacova_03430) From Bacteroides Ovatus At 2.40
A Resolution
Length = 323
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 10/140 (7%)
Query: 50 RVRIPLNAQEHTFHLKLHEIFFEDSDQDSFLEDLRANLLSTQGLGECAQEILMKTILDEA 109
R+ IP ++L + FF +D+ S E+ LL T G A IL + E
Sbjct: 96 RIAIPKGQIXAGVEVQLTDDFF--ADEKSISENYVIPLLXTNVQG--ADSILQGKPVVEN 151
Query: 110 KAAAHATPYDPECSLVAVGVQLEVVRVIETWEIAILEEG--SGLILGQERCVICLEEFSE 167
+A + S++ L V+ + W L G + G + +I E+F E
Sbjct: 152 PVLTNAGDW----SILPQNFVLYAVKYVNPWHGEYLRRGIDHATVAGTSKDIIRHEQFVE 207
Query: 168 GDEVISLQCSHVHHRHCILK 187
DEV+++ LK
Sbjct: 208 NDEVVNISTKSXKDNLLTLK 227
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 153 LGQERCVICLEEFSEGDEVIS-LQCSHVHHRHCILKWLVTGNNCPTC 198
+ Q+ C ICLE+ V L C H+ HR C + L G CP C
Sbjct: 3 VSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 138 ETWEIAILEEGSGLILGQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPT 197
T I I E L+ CV+C F + +I +C H + CI+++L T CP
Sbjct: 3 RTTRIKITELNPHLM-----CVLCGGYFIDATTII--ECLHSFCKTCIVRYLETSKYCPI 55
Query: 198 C 198
C
Sbjct: 56 C 56
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 138 ETWEIAILEEGSGLILGQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPT 197
T I I E L+ CV+C F + +I +C H + CI+++L T CP
Sbjct: 3 RTTRIKITELNPHLM-----CVLCGGYFIDATTII--ECLHSFCKTCIVRYLETSKYCPI 55
Query: 198 C 198
C
Sbjct: 56 C 56
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 172 ISLQCSHVHHRHCILKWL-VTGNNCPTCRFTLPCTTT 207
+ C H+ R CIL+ L V G+ CP+CR+ PC T
Sbjct: 37 VETSCKHLFCRICILRCLKVMGSYCPSCRY--PCFPT 71
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 158 CVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTC 198
CV+C F + +I +C H + CI+++L T CP C
Sbjct: 14 CVLCGGYFIDATTII--ECLHSFCKTCIVRYLETSKYCPIC 52
>pdb|1V87|A Chain A, Solution Structure Of The Ring-H2 Finger Domain Of Mouse
Deltex Protein 2
Length = 114
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 20/65 (30%)
Query: 155 QERCVICLEEFSE-------------GDEVIS--LQCSHVHHRHCILKWLVTGNN----- 194
+E C+IC+E+ + G V+ +CSH H C+L GN
Sbjct: 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQ 84
Query: 195 CPTCR 199
CP+C+
Sbjct: 85 CPSCK 89
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 158 CVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTG---NNCPTCR 199
C ICLE E +S +C H+ + C+LK L + CP C+
Sbjct: 24 CPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCK 65
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 176 CSHVHHRHCILKWLVTGNNCP 196
C+H H HCI +WL T CP
Sbjct: 75 CNHAFHFHCISRWLKTRQVCP 95
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 176 CSHVHHRHCILKWLVTGNNCP 196
C+H H HCI +WL T CP
Sbjct: 84 CNHAFHFHCISRWLKTRQVCP 104
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 176 CSHVHHRHCILKWLVTGNNCP 196
C+H H HCI +WL T CP
Sbjct: 67 CNHAFHFHCISRWLKTRQVCP 87
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 176 CSHVHHRHCILKWLVTGNNCP 196
C+H H HCI +WL T CP
Sbjct: 73 CNHAFHFHCISRWLKTRQVCP 93
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 176 CSHVHHRHCILKWLVTGNNCP 196
C+H H HCI +WL T CP
Sbjct: 73 CNHAFHFHCISRWLKTRQVCP 93
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 176 CSHVHHRHCILKWLVTGNNCP 196
C+H H HCI +WL T CP
Sbjct: 65 CNHAFHFHCISRWLKTRQVCP 85
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 176 CSHVHHRHCILKWLVTGNNCP 196
C+H H HCI +WL T CP
Sbjct: 57 CNHAFHFHCISRWLKTRQVCP 77
>pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine
pdb|2VMO|A Chain A, Crystal Structure Of N341absshmt Gly External Aldimine
pdb|2VMP|A Chain A, Crystal Structure Of N341absshmt L-Ser External Aldimine
pdb|2VMQ|A Chain A, Structure Of N341absshmt Crystallized In The Presence Of
L- Allo-Thr
Length = 405
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 74 SDQDSFLEDLRANLLSTQGLGECAQEILMKTILDEAKAAAHATPYDPECSLVAVGVQLEV 133
+D L DLR L+ G+ A+++L + + KA PYDPE V G+++
Sbjct: 308 TDNHLLLVDLRPQQLT----GKTAEKVLDEVGITVNKAT---IPYDPESPFVTSGIRIGT 360
Query: 134 VRV 136
V
Sbjct: 361 AAV 363
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 158 CVICLEEFSEGD-EVISLQCSHVHHRHCILKWL---VTGNNCPTC 198
C IC+E F+E L C H R C+ K L + G CP C
Sbjct: 18 CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 158 CVICLEEFSEGDEVISL-QCSHVHHRHCILKWLVTGNNCPTCR 199
C+ C E + D V+ +C+H H C+ W+ N CP C+
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,801,435
Number of Sequences: 62578
Number of extensions: 282187
Number of successful extensions: 609
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 576
Number of HSP's gapped (non-prelim): 40
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)