Query 041711
Match_columns 210
No_of_seqs 267 out of 1472
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 16:52:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041711.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041711hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 3.7E-18 1.3E-22 122.5 7.9 79 123-204 11-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 4.6E-17 1.6E-21 112.3 4.3 52 154-205 22-73 (75)
3 2kiz_A E3 ubiquitin-protein li 99.6 3.5E-16 1.2E-20 106.0 6.2 54 154-207 13-66 (69)
4 1iym_A EL5; ring-H2 finger, ub 99.6 2.1E-16 7.1E-21 102.4 3.9 50 154-203 4-54 (55)
5 2ep4_A Ring finger protein 24; 99.6 1.1E-15 3.7E-20 104.9 6.2 52 154-205 14-65 (74)
6 2ect_A Ring finger protein 126 99.6 1.3E-15 4.3E-20 105.6 4.9 52 154-205 14-65 (78)
7 2ecl_A Ring-box protein 2; RNF 99.5 2.5E-15 8.4E-20 105.5 4.2 51 154-204 14-76 (81)
8 2ecm_A Ring finger and CHY zin 99.5 6.2E-15 2.1E-19 95.2 4.5 50 154-203 4-54 (55)
9 3ng2_A RNF4, snurf, ring finge 99.5 8.9E-15 3E-19 99.3 3.5 52 154-205 9-64 (71)
10 2ea6_A Ring finger protein 4; 99.5 1.5E-14 5.3E-19 97.3 4.7 51 154-204 14-68 (69)
11 3dpl_R Ring-box protein 1; ubi 99.5 1.8E-14 6.3E-19 106.2 4.8 50 154-203 36-100 (106)
12 1v87_A Deltex protein 2; ring- 99.5 2.4E-14 8.2E-19 106.1 5.3 51 155-205 25-95 (114)
13 2xeu_A Ring finger protein 4; 99.5 1.7E-14 5.8E-19 95.7 3.5 52 154-205 2-57 (64)
14 2d8s_A Cellular modulator of i 99.5 4.7E-14 1.6E-18 98.9 4.6 51 154-205 14-71 (80)
15 2ecn_A Ring finger protein 141 99.4 3.4E-14 1.2E-18 96.3 2.4 49 154-206 14-62 (70)
16 2d8t_A Dactylidin, ring finger 99.4 8.7E-14 3E-18 94.8 4.1 47 154-203 14-60 (71)
17 1chc_A Equine herpes virus-1 r 99.4 1E-13 3.5E-18 93.4 4.1 49 154-204 4-52 (68)
18 2djb_A Polycomb group ring fin 99.4 2.9E-13 1E-17 92.4 5.7 50 154-206 14-64 (72)
19 2ct2_A Tripartite motif protei 99.4 2.9E-13 1E-17 95.3 5.8 52 154-205 14-69 (88)
20 4a0k_B E3 ubiquitin-protein li 99.4 4.1E-14 1.4E-18 106.0 0.2 50 154-203 47-111 (117)
21 2csy_A Zinc finger protein 183 99.4 4.6E-13 1.6E-17 93.4 5.3 47 154-203 14-60 (81)
22 4ayc_A E3 ubiquitin-protein li 99.4 2.7E-13 9.4E-18 104.0 4.4 47 155-204 53-99 (138)
23 2ysl_A Tripartite motif-contai 99.4 8.1E-13 2.8E-17 90.0 5.6 50 154-206 19-71 (73)
24 2ecy_A TNF receptor-associated 99.3 6.7E-13 2.3E-17 89.0 4.5 49 154-205 14-63 (66)
25 2yur_A Retinoblastoma-binding 99.3 9.1E-13 3.1E-17 90.5 5.1 48 154-204 14-64 (74)
26 1t1h_A Gspef-atpub14, armadill 99.3 1.1E-12 3.7E-17 90.6 5.4 49 154-205 7-56 (78)
27 2ct0_A Non-SMC element 1 homol 99.3 1.3E-12 4.4E-17 90.2 4.8 51 154-206 14-66 (74)
28 4ap4_A E3 ubiquitin ligase RNF 99.3 1.2E-12 4.2E-17 98.4 3.8 52 154-205 6-61 (133)
29 3lrq_A E3 ubiquitin-protein li 99.3 1.7E-12 5.7E-17 94.3 4.1 48 154-204 21-70 (100)
30 2ecw_A Tripartite motif-contai 99.3 3.5E-12 1.2E-16 88.8 5.4 49 154-205 18-72 (85)
31 1g25_A CDK-activating kinase a 99.3 3.8E-12 1.3E-16 85.0 4.5 51 155-205 3-56 (65)
32 2y43_A E3 ubiquitin-protein li 99.3 3.7E-12 1.2E-16 92.0 4.5 48 154-204 21-69 (99)
33 2egp_A Tripartite motif-contai 99.3 9.9E-13 3.4E-17 90.8 1.4 48 154-204 11-65 (79)
34 2ecv_A Tripartite motif-contai 99.2 3.8E-12 1.3E-16 88.7 4.2 49 154-205 18-72 (85)
35 2ysj_A Tripartite motif-contai 99.2 6.9E-12 2.4E-16 83.1 5.1 42 154-198 19-63 (63)
36 2ckl_A Polycomb group ring fin 99.2 5.6E-12 1.9E-16 92.5 4.9 49 154-205 14-63 (108)
37 3ztg_A E3 ubiquitin-protein li 99.2 8.3E-12 2.8E-16 88.8 5.5 46 154-202 12-60 (92)
38 3fl2_A E3 ubiquitin-protein li 99.2 5.3E-12 1.8E-16 94.9 4.6 48 154-204 51-99 (124)
39 4ap4_A E3 ubiquitin ligase RNF 99.2 3.9E-12 1.3E-16 95.7 3.2 52 154-205 71-126 (133)
40 2ecj_A Tripartite motif-contai 99.2 9.8E-12 3.4E-16 80.7 3.5 42 154-198 14-58 (58)
41 1jm7_A BRCA1, breast cancer ty 99.2 1E-11 3.5E-16 91.2 3.5 48 155-205 21-71 (112)
42 1z6u_A NP95-like ring finger p 99.2 1.9E-11 6.5E-16 95.2 4.8 48 155-205 78-126 (150)
43 2ckl_B Ubiquitin ligase protei 99.2 2E-11 6.7E-16 96.1 4.6 47 154-203 53-101 (165)
44 3hct_A TNF receptor-associated 99.1 2.8E-11 9.5E-16 90.3 4.0 48 154-204 17-65 (118)
45 1rmd_A RAG1; V(D)J recombinati 99.1 2.7E-11 9.1E-16 89.9 3.7 48 154-204 22-70 (116)
46 3l11_A E3 ubiquitin-protein li 99.1 1.2E-11 4.1E-16 91.7 1.1 47 154-203 14-61 (115)
47 2vje_A E3 ubiquitin-protein li 99.1 4.7E-11 1.6E-15 79.9 3.6 47 154-203 7-56 (64)
48 2kr4_A Ubiquitin conjugation f 99.1 7.4E-11 2.5E-15 83.3 4.5 48 154-204 13-60 (85)
49 2kre_A Ubiquitin conjugation f 99.1 7.5E-11 2.6E-15 85.8 4.5 49 154-205 28-76 (100)
50 1wgm_A Ubiquitin conjugation f 99.0 1.4E-10 4.8E-15 84.1 4.7 49 154-205 21-70 (98)
51 1bor_A Transcription factor PM 99.0 4.5E-11 1.5E-15 77.7 1.6 48 154-207 5-52 (56)
52 2y1n_A E3 ubiquitin-protein li 99.0 1.4E-10 4.6E-15 102.9 5.0 47 155-204 332-379 (389)
53 3knv_A TNF receptor-associated 99.0 9.9E-11 3.4E-15 90.2 3.2 47 154-203 30-77 (141)
54 1e4u_A Transcriptional repress 99.0 1.7E-10 5.9E-15 80.2 3.9 51 154-205 10-63 (78)
55 2vje_B MDM4 protein; proto-onc 99.0 1.5E-10 5.2E-15 77.1 3.5 47 154-203 6-55 (63)
56 4ic3_A E3 ubiquitin-protein li 99.0 1.5E-10 5.2E-15 79.4 2.1 44 154-204 23-67 (74)
57 1jm7_B BARD1, BRCA1-associated 98.9 1.2E-10 3.9E-15 86.7 0.6 46 154-204 21-67 (117)
58 3k1l_B Fancl; UBC, ring, RWD, 98.9 1.9E-10 6.7E-15 99.9 -0.2 53 153-205 306-374 (381)
59 2c2l_A CHIP, carboxy terminus 98.9 1.1E-09 3.8E-14 91.9 4.3 48 154-204 207-255 (281)
60 3hcs_A TNF receptor-associated 98.9 1.4E-09 4.9E-14 85.7 4.1 48 154-204 17-65 (170)
61 1vyx_A ORF K3, K3RING; zinc-bi 98.8 2.5E-09 8.6E-14 70.6 4.1 48 154-204 5-59 (60)
62 2yu4_A E3 SUMO-protein ligase 98.8 1.6E-09 5.4E-14 77.7 3.1 45 154-201 6-59 (94)
63 2ecg_A Baculoviral IAP repeat- 98.8 2.4E-09 8.2E-14 73.5 2.3 44 155-205 25-69 (75)
64 2ea5_A Cell growth regulator w 98.8 5.6E-09 1.9E-13 70.5 3.9 44 154-204 14-58 (68)
65 2f42_A STIP1 homology and U-bo 98.8 5.4E-09 1.8E-13 83.6 4.4 48 154-204 105-153 (179)
66 2yho_A E3 ubiquitin-protein li 98.7 3.4E-09 1.2E-13 73.7 1.8 42 155-203 18-60 (79)
67 1wim_A KIAA0161 protein; ring 98.6 1.2E-08 4.3E-13 72.7 3.2 48 154-201 4-61 (94)
68 2bay_A PRE-mRNA splicing facto 98.6 2.3E-08 7.8E-13 66.2 2.6 46 156-204 4-50 (61)
69 3t6p_A Baculoviral IAP repeat- 98.5 2.1E-08 7.3E-13 87.8 1.7 43 154-203 294-337 (345)
70 3htk_C E3 SUMO-protein ligase 98.4 1.3E-07 4.5E-12 79.5 3.5 48 154-203 180-231 (267)
71 3vk6_A E3 ubiquitin-protein li 98.4 2.6E-07 9E-12 66.4 4.2 45 157-203 3-48 (101)
72 3nw0_A Non-structural maintena 98.1 1.3E-06 4.4E-11 72.7 3.2 51 155-207 180-232 (238)
73 2ko5_A Ring finger protein Z; 96.5 0.0014 4.8E-08 46.4 2.5 49 154-207 27-76 (99)
74 2lri_C Autoimmune regulator; Z 95.4 0.0087 3E-07 39.7 2.5 45 154-202 11-60 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 95.0 0.014 4.9E-07 41.2 2.8 35 155-189 3-38 (101)
76 2l5u_A Chromodomain-helicase-D 90.6 0.13 4.4E-06 33.2 2.1 44 154-200 10-57 (61)
77 1wil_A KIAA1045 protein; ring 90.3 0.2 6.7E-06 34.7 2.9 31 154-188 14-47 (89)
78 1we9_A PHD finger family prote 89.6 0.064 2.2E-06 34.8 -0.0 48 154-201 5-58 (64)
79 1f62_A Transcription factor WS 89.3 0.16 5.4E-06 31.3 1.7 43 157-200 2-49 (51)
80 1fp0_A KAP-1 corepressor; PHD 89.3 0.17 5.7E-06 35.4 1.9 48 154-204 24-75 (88)
81 3icu_A E3 ubiquitin-protein li 89.0 0.026 9E-07 45.2 -2.7 71 26-106 100-174 (194)
82 2yql_A PHD finger protein 21A; 88.0 0.044 1.5E-06 34.8 -1.7 44 154-200 8-55 (56)
83 1mm2_A MI2-beta; PHD, zinc fin 86.5 0.14 4.7E-06 33.1 0.1 46 154-202 8-57 (61)
84 2l43_A N-teminal domain from h 84.3 0.27 9.4E-06 34.1 0.8 49 154-202 24-76 (88)
85 2k16_A Transcription initiatio 84.2 0.25 8.4E-06 33.0 0.5 49 154-203 17-70 (75)
86 2puy_A PHD finger protein 21A; 84.0 0.052 1.8E-06 34.9 -2.9 47 154-203 4-54 (60)
87 2yt5_A Metal-response element- 83.7 0.52 1.8E-05 30.5 1.9 50 154-203 5-63 (66)
88 3m62_A Ubiquitin conjugation f 83.3 0.89 3E-05 44.4 4.1 48 154-204 890-938 (968)
89 1xwh_A Autoimmune regulator; P 83.1 0.13 4.4E-06 33.7 -1.3 44 154-201 7-55 (66)
90 3v43_A Histone acetyltransfera 82.9 0.32 1.1E-05 35.1 0.7 46 155-200 61-111 (112)
91 2lv9_A Histone-lysine N-methyl 81.2 0.55 1.9E-05 33.1 1.4 44 156-200 29-75 (98)
92 2lbm_A Transcriptional regulat 80.2 1.9 6.7E-05 32.5 4.2 43 154-200 62-116 (142)
93 2vpb_A Hpygo1, pygopus homolog 79.9 1.4 5E-05 28.6 3.0 33 154-186 7-41 (65)
94 2ysm_A Myeloid/lymphoid or mix 78.6 0.54 1.9E-05 33.6 0.6 37 154-190 6-42 (111)
95 2e6r_A Jumonji/ARID domain-con 77.1 0.18 6.1E-06 35.3 -2.3 47 154-201 15-66 (92)
96 3shb_A E3 ubiquitin-protein li 76.7 0.34 1.2E-05 32.8 -0.9 43 157-200 28-76 (77)
97 1wep_A PHF8; structural genomi 76.4 2.1 7E-05 28.7 3.1 47 155-202 12-64 (79)
98 2ri7_A Nucleosome-remodeling f 75.8 0.66 2.2E-05 35.8 0.4 46 154-200 7-58 (174)
99 1wev_A Riken cDNA 1110020M19; 74.7 0.31 1E-05 33.8 -1.6 49 154-202 15-73 (88)
100 2kgg_A Histone demethylase jar 74.7 3 0.0001 25.6 3.2 43 157-199 4-52 (52)
101 2e6s_A E3 ubiquitin-protein li 74.1 0.65 2.2E-05 31.4 0.0 43 157-200 28-76 (77)
102 3v43_A Histone acetyltransfera 71.9 5.3 0.00018 28.5 4.5 33 154-186 4-42 (112)
103 3ql9_A Transcriptional regulat 71.8 3.7 0.00013 30.5 3.7 43 154-200 56-110 (129)
104 3asl_A E3 ubiquitin-protein li 70.7 0.81 2.8E-05 30.2 -0.2 43 157-200 20-68 (70)
105 1wfk_A Zinc finger, FYVE domai 69.2 3.4 0.00012 28.4 2.8 35 154-188 8-43 (88)
106 2ku3_A Bromodomain-containing 68.7 4.2 0.00015 26.8 3.1 47 154-200 15-65 (71)
107 1joc_A EEA1, early endosomal a 67.9 2.9 9.9E-05 30.7 2.4 34 155-188 69-103 (125)
108 2yw8_A RUN and FYVE domain-con 67.6 3.2 0.00011 28.0 2.4 49 154-202 18-73 (82)
109 1vfy_A Phosphatidylinositol-3- 67.1 3.4 0.00012 27.2 2.4 32 156-187 12-44 (73)
110 2cs3_A Protein C14ORF4, MY039 67.0 7.7 0.00026 26.5 4.1 36 155-191 15-52 (93)
111 3t7l_A Zinc finger FYVE domain 66.5 3.4 0.00012 28.4 2.4 35 155-189 20-55 (90)
112 2xb1_A Pygopus homolog 2, B-ce 66.3 2.9 9.9E-05 29.7 2.0 47 156-202 4-62 (105)
113 1weo_A Cellulose synthase, cat 66.0 7.7 0.00026 26.9 4.0 50 154-203 15-69 (93)
114 2kwj_A Zinc finger protein DPF 65.9 1.7 5.8E-05 31.3 0.7 33 156-188 2-41 (114)
115 1z2q_A LM5-1; membrane protein 65.7 4.5 0.00015 27.4 2.8 35 154-188 20-55 (84)
116 1y02_A CARP2, FYVE-ring finger 65.0 0.59 2E-05 34.4 -1.9 46 155-200 19-65 (120)
117 1zbd_B Rabphilin-3A; G protein 64.6 2.8 9.6E-05 31.3 1.7 33 154-186 54-88 (134)
118 3ask_A E3 ubiquitin-protein li 64.4 1.3 4.3E-05 36.2 -0.3 43 157-200 176-224 (226)
119 2ysm_A Myeloid/lymphoid or mix 64.3 1.3 4.3E-05 31.7 -0.2 46 157-202 56-105 (111)
120 3i2d_A E3 SUMO-protein ligase 64.2 5.6 0.00019 34.7 3.8 46 156-203 250-299 (371)
121 1z60_A TFIIH basal transcripti 64.2 2.8 9.4E-05 26.9 1.4 43 156-198 16-58 (59)
122 1wen_A Inhibitor of growth fam 63.9 4.2 0.00014 26.8 2.3 44 154-202 15-66 (71)
123 4gne_A Histone-lysine N-methyl 63.2 6.2 0.00021 28.2 3.3 43 154-202 14-63 (107)
124 4fo9_A E3 SUMO-protein ligase 62.7 6.3 0.00021 34.2 3.8 46 156-203 216-265 (360)
125 1weu_A Inhibitor of growth fam 61.6 2.7 9.2E-05 29.3 1.1 44 154-202 35-86 (91)
126 1dvp_A HRS, hepatocyte growth 61.3 3.5 0.00012 32.9 1.9 35 154-188 160-195 (220)
127 3zyq_A Hepatocyte growth facto 60.0 3.9 0.00013 33.0 1.9 50 154-203 163-221 (226)
128 1x4u_A Zinc finger, FYVE domai 58.9 5.1 0.00017 27.1 2.1 34 154-187 13-47 (84)
129 2kwj_A Zinc finger protein DPF 58.4 0.47 1.6E-05 34.4 -3.5 47 156-202 59-109 (114)
130 2jvx_A NF-kappa-B essential mo 58.1 2.1 7.2E-05 23.2 0.0 13 192-204 3-15 (28)
131 2zet_C Melanophilin; complex, 56.2 4.7 0.00016 30.7 1.7 32 154-185 67-100 (153)
132 3mpx_A FYVE, rhogef and PH dom 55.9 2.4 8.2E-05 37.0 0.0 49 154-202 374-430 (434)
133 3c6w_A P28ING5, inhibitor of g 53.6 2.3 8E-05 27.0 -0.3 42 154-200 8-57 (59)
134 2o35_A Hypothetical protein DU 53.4 5.4 0.00018 28.3 1.5 12 180-191 43-54 (105)
135 3fyb_A Protein of unknown func 53.3 5.4 0.00018 28.2 1.5 12 180-191 42-53 (104)
136 1iml_A CRIP, cysteine rich int 53.1 7.2 0.00025 25.2 2.0 44 154-201 26-70 (76)
137 2cu8_A Cysteine-rich protein 2 53.0 11 0.00037 24.3 2.9 40 155-204 9-48 (76)
138 2vnf_A ING 4, P29ING4, inhibit 51.2 2.6 8.8E-05 26.8 -0.5 41 155-200 10-58 (60)
139 1wem_A Death associated transc 47.0 18 0.00062 23.6 3.3 45 156-201 17-70 (76)
140 2d8v_A Zinc finger FYVE domain 46.4 12 0.0004 24.5 2.2 31 154-188 7-38 (67)
141 2dj7_A Actin-binding LIM prote 45.7 17 0.00058 23.9 3.0 40 154-203 14-53 (80)
142 2gmg_A Hypothetical protein PF 45.7 3.8 0.00013 29.3 -0.3 24 174-202 71-94 (105)
143 2g6q_A Inhibitor of growth pro 44.2 4.2 0.00014 26.0 -0.2 41 155-200 11-59 (62)
144 1wee_A PHD finger family prote 42.6 12 0.00041 24.3 1.8 47 154-201 15-66 (72)
145 2co8_A NEDD9 interacting prote 41.5 15 0.00052 24.1 2.3 40 154-203 14-53 (82)
146 1wd2_A Ariadne-1 protein homol 40.4 2.4 8.3E-05 27.1 -1.9 37 156-192 7-48 (60)
147 3o7a_A PHD finger protein 13 v 38.7 4.2 0.00014 24.8 -0.9 40 160-200 8-51 (52)
148 1x63_A Skeletal muscle LIM-pro 38.6 35 0.0012 22.0 3.8 40 156-204 16-55 (82)
149 3vhs_A ATPase wrnip1; zinc fin 37.3 7.3 0.00025 20.6 0.1 11 194-204 8-18 (29)
150 3mjh_B Early endosome antigen 36.7 9.8 0.00034 21.5 0.6 10 156-165 6-15 (34)
151 1zfo_A LAsp-1; LIM domain, zin 36.3 8.9 0.0003 20.8 0.3 27 156-184 4-30 (31)
152 3a1b_A DNA (cytosine-5)-methyl 34.8 20 0.00069 27.4 2.2 34 154-191 78-114 (159)
153 1x4k_A Skeletal muscle LIM-pro 32.8 41 0.0014 20.9 3.3 39 156-203 6-44 (72)
154 1wyh_A SLIM 2, skeletal muscle 32.2 37 0.0013 21.2 2.9 39 156-203 6-44 (72)
155 2pk7_A Uncharacterized protein 32.1 11 0.00039 24.6 0.3 18 186-203 2-19 (69)
156 3f6q_B LIM and senescent cell 31.8 26 0.00089 21.8 2.1 40 155-203 11-50 (72)
157 1x61_A Thyroid receptor intera 31.4 44 0.0015 20.9 3.2 11 157-167 7-17 (72)
158 1wew_A DNA-binding family prot 31.3 44 0.0015 21.9 3.3 48 154-202 15-73 (78)
159 2d8x_A Protein pinch; LIM doma 31.3 25 0.00087 22.0 2.0 37 156-203 6-42 (70)
160 2pv0_B DNA (cytosine-5)-methyl 31.3 26 0.00089 30.6 2.6 43 155-200 93-147 (386)
161 2jmo_A Parkin; IBR, E3 ligase, 30.9 3.8 0.00013 27.5 -2.2 19 175-195 55-73 (80)
162 1x68_A FHL5 protein; four-and- 29.7 44 0.0015 21.2 3.0 39 156-203 6-46 (76)
163 1g47_A Pinch protein; LIM doma 29.5 48 0.0016 20.9 3.2 41 154-203 10-50 (77)
164 2d8y_A Eplin protein; LIM doma 28.1 55 0.0019 21.6 3.4 27 156-184 16-42 (91)
165 1x4l_A Skeletal muscle LIM-pro 28.1 44 0.0015 20.9 2.8 40 155-203 5-46 (72)
166 2dar_A PDZ and LIM domain prot 28.0 43 0.0015 22.1 2.8 39 154-203 24-62 (90)
167 1nyp_A Pinch protein; LIM doma 28.0 48 0.0016 20.3 2.9 38 156-204 6-43 (66)
168 3o70_A PHD finger protein 13; 27.3 28 0.00095 22.4 1.6 45 154-200 18-66 (68)
169 2jny_A Uncharacterized BCR; st 27.0 11 0.00036 24.7 -0.5 18 186-203 4-21 (67)
170 2cor_A Pinch protein; LIM doma 26.8 42 0.0014 21.7 2.5 38 155-203 15-52 (79)
171 1v6g_A Actin binding LIM prote 24.6 55 0.0019 21.0 2.8 26 156-184 16-41 (81)
172 1m3v_A FLIN4, fusion of the LI 24.1 65 0.0022 22.6 3.3 51 154-204 31-81 (122)
173 3kqi_A GRC5, PHD finger protei 24.1 50 0.0017 21.4 2.5 44 158-201 12-61 (75)
174 2d8z_A Four and A half LIM dom 23.0 64 0.0022 19.9 2.8 37 156-203 6-42 (70)
175 1x64_A Alpha-actinin-2 associa 23.0 93 0.0032 20.3 3.8 40 154-204 24-63 (89)
176 2l3k_A Rhombotin-2, linker, LI 22.6 42 0.0014 23.7 2.0 36 154-190 35-70 (123)
177 2lcq_A Putative toxin VAPC6; P 22.6 22 0.00074 26.8 0.4 23 174-202 136-158 (165)
178 2l4z_A DNA endonuclease RBBP8, 22.5 46 0.0016 23.8 2.2 39 155-203 61-99 (123)
179 2jne_A Hypothetical protein YF 22.2 25 0.00087 24.7 0.7 39 156-202 33-71 (101)
180 2xjy_A Rhombotin-2; oncoprotei 21.0 68 0.0023 22.5 2.9 27 157-184 68-94 (131)
181 3pwf_A Rubrerythrin; non heme 20.8 43 0.0015 25.6 1.9 21 174-201 142-162 (170)
182 1x62_A C-terminal LIM domain p 20.6 69 0.0023 20.5 2.6 38 154-202 14-51 (79)
183 2jmi_A Protein YNG1, ING1 homo 20.6 17 0.00057 25.1 -0.6 42 154-200 25-75 (90)
184 2ct7_A Ring finger protein 31; 20.3 7 0.00024 26.5 -2.5 20 172-191 44-64 (86)
185 1loi_A Cyclic 3',5'-AMP specif 20.1 5.7 0.0002 20.4 -2.2 12 179-190 6-17 (26)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.74 E-value=3.7e-18 Score=122.48 Aligned_cols=79 Identities=25% Similarity=0.568 Sum_probs=66.3
Q ss_pred cccccCCCHHHHhhcccceeeeecccCccccCccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCC
Q 041711 123 SLVAVGVQLEVVRVIETWEIAILEEGSGLILGQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTL 202 (210)
Q Consensus 123 ~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i 202 (210)
.....|++++.++.|+.+...... ....+...|+||++.|..++.++.++|+|.||..||..|+..+.+||+||..+
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~---~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDH---GAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 87 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTC---SSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBS
T ss_pred CcCCCCCCHHHHHhCCCeeecccc---cccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccC
Confidence 346779999999999987654322 22235678999999999989899999999999999999999999999999998
Q ss_pred CC
Q 041711 203 PC 204 (210)
Q Consensus 203 ~~ 204 (210)
+.
T Consensus 88 ~~ 89 (91)
T 2l0b_A 88 PP 89 (91)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.6e-17 Score=112.31 Aligned_cols=52 Identities=33% Similarity=0.768 Sum_probs=47.7
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLPCT 205 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~~ 205 (210)
+...|+||++.|..++.++.++|+|.||..||.+|+..+.+||+||+++...
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 5678999999999988888999999999999999999999999999998643
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=3.5e-16 Score=105.97 Aligned_cols=54 Identities=37% Similarity=0.958 Sum_probs=48.7
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCCCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLPCTTT 207 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~~~~ 207 (210)
....|+||++.|..++.++.++|+|.||..||.+|+..+.+||+||..+....+
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 557899999999888888889999999999999999999999999999976543
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.62 E-value=2.1e-16 Score=102.38 Aligned_cols=50 Identities=36% Similarity=0.881 Sum_probs=45.9
Q ss_pred CccccccccccccCCCeeEEeC-CCCcccHHhHHHHHhcCCCCCccCcCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQ-CSHVHHRHCILKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~Lp-C~H~Fh~~CI~~Wl~~~~~CPlCR~~i~ 203 (210)
+..+|+||++.|..++.+..++ |+|.||..||.+|+..+.+||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4568999999999988888886 9999999999999999999999999874
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=104.92 Aligned_cols=52 Identities=37% Similarity=0.850 Sum_probs=47.2
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLPCT 205 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~~ 205 (210)
....|+||++.|..+..++.++|+|.||..||.+|+..+.+||+||.++...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 4578999999999888888889999999999999999999999999998543
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.58 E-value=1.3e-15 Score=105.64 Aligned_cols=52 Identities=35% Similarity=0.892 Sum_probs=47.3
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLPCT 205 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~~ 205 (210)
....|+||++.|..+..++.++|+|.||..||.+|+..+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 5678999999999888888899999999999999999999999999998654
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.5e-15 Score=105.49 Aligned_cols=51 Identities=27% Similarity=0.715 Sum_probs=41.8
Q ss_pred CccccccccccccC-----------CCeeEEe-CCCCcccHHhHHHHHhcCCCCCccCcCCCC
Q 041711 154 GQERCVICLEEFSE-----------GDEVISL-QCSHVHHRHCILKWLVTGNNCPTCRFTLPC 204 (210)
Q Consensus 154 ~~~~C~ICle~~~~-----------~~~~~~L-pC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~ 204 (210)
++..|+||++.|.. ++.++.+ +|+|.||..||.+||..+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 34568888888853 4456666 599999999999999999999999998854
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.53 E-value=6.2e-15 Score=95.24 Aligned_cols=50 Identities=34% Similarity=0.717 Sum_probs=43.7
Q ss_pred CccccccccccccCCC-eeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCC
Q 041711 154 GQERCVICLEEFSEGD-EVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~-~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~ 203 (210)
+...|+||++.|..++ .++.++|+|.||..||.+|+..+.+||+||.+++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4568999999996644 5667799999999999999999999999999875
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.50 E-value=8.9e-15 Score=99.26 Aligned_cols=52 Identities=37% Similarity=0.837 Sum_probs=44.8
Q ss_pred CccccccccccccC----CCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCCCC
Q 041711 154 GQERCVICLEEFSE----GDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLPCT 205 (210)
Q Consensus 154 ~~~~C~ICle~~~~----~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~~ 205 (210)
+...|+||++.|.. ++.++.++|+|.||..||.+|+..+.+||+||.++...
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 56789999999865 24457779999999999999999999999999998644
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.5e-14 Score=97.33 Aligned_cols=51 Identities=35% Similarity=0.781 Sum_probs=44.0
Q ss_pred CccccccccccccCC----CeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCCC
Q 041711 154 GQERCVICLEEFSEG----DEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLPC 204 (210)
Q Consensus 154 ~~~~C~ICle~~~~~----~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~ 204 (210)
+...|+||++.|... +.++.++|+|.||..||..|+..+.+||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 567899999999753 345678999999999999999999999999998854
No 11
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.49 E-value=1.8e-14 Score=106.22 Aligned_cols=50 Identities=30% Similarity=0.590 Sum_probs=42.5
Q ss_pred CccccccccccccCC-------------C--eeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCC
Q 041711 154 GQERCVICLEEFSEG-------------D--EVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 154 ~~~~C~ICle~~~~~-------------~--~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~ 203 (210)
+.+.|+||++.|... + .++.++|+|.||..||.+||..+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 457899999999754 1 2566799999999999999999999999999864
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.48 E-value=2.4e-14 Score=106.08 Aligned_cols=51 Identities=27% Similarity=0.643 Sum_probs=41.3
Q ss_pred ccccccccccccCCC---------------eeEEeCCCCcccHHhHHHHHh-----cCCCCCccCcCCCCC
Q 041711 155 QERCVICLEEFSEGD---------------EVISLQCSHVHHRHCILKWLV-----TGNNCPTCRFTLPCT 205 (210)
Q Consensus 155 ~~~C~ICle~~~~~~---------------~~~~LpC~H~Fh~~CI~~Wl~-----~~~~CPlCR~~i~~~ 205 (210)
+..|+||++.|..+. .++.++|+|.||..||..|+. .+.+||+||..+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 458999999996543 234669999999999999994 467999999988543
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.48 E-value=1.7e-14 Score=95.70 Aligned_cols=52 Identities=33% Similarity=0.721 Sum_probs=44.4
Q ss_pred CccccccccccccCC----CeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCCCC
Q 041711 154 GQERCVICLEEFSEG----DEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLPCT 205 (210)
Q Consensus 154 ~~~~C~ICle~~~~~----~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~~ 205 (210)
+..+|+||++.+... +.+..++|+|.||..||.+|+..+.+||+||.++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 346899999999752 4456779999999999999999999999999998654
No 14
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=4.7e-14 Score=98.91 Aligned_cols=51 Identities=24% Similarity=0.668 Sum_probs=43.6
Q ss_pred CccccccccccccCCCeeEEeCCC-----CcccHHhHHHHHhcC--CCCCccCcCCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCS-----HVHHRHCILKWLVTG--NNCPTCRFTLPCT 205 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~-----H~Fh~~CI~~Wl~~~--~~CPlCR~~i~~~ 205 (210)
+...|.||+++|..++.+ ++||+ |.||..||++||..+ .+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 567899999999876655 58996 999999999999876 4899999998654
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=3.4e-14 Score=96.35 Aligned_cols=49 Identities=33% Similarity=0.859 Sum_probs=43.4
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLPCTT 206 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~~~ 206 (210)
+...|+||++.+.. +.++|+|.||..||.+|+..+.+||+||.++....
T Consensus 14 ~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 14 DEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 45689999999875 67899999999999999999999999999996554
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=8.7e-14 Score=94.78 Aligned_cols=47 Identities=32% Similarity=0.679 Sum_probs=41.9
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~ 203 (210)
+...|+||++.+.. .+.++|+|.||..||..|+..+.+||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 14 TVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 45689999999854 567899999999999999999999999999884
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.42 E-value=1e-13 Score=93.37 Aligned_cols=49 Identities=35% Similarity=0.810 Sum_probs=42.4
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLPC 204 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~ 204 (210)
....|+||++.+.. ..+.++|+|.||..||..|+..+.+||+||.++..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 45689999999864 34677999999999999999999999999998853
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.9e-13 Score=92.38 Aligned_cols=50 Identities=24% Similarity=0.618 Sum_probs=43.0
Q ss_pred CccccccccccccCCCeeEEe-CCCCcccHHhHHHHHhcCCCCCccCcCCCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLVTGNNCPTCRFTLPCTT 206 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~~~ 206 (210)
+...|+||++.+.+ ++.+ +|+|.||..||..|+..+..||+||..+...+
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 14 PYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp GGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 45689999999875 4455 99999999999999999999999999986543
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.9e-13 Score=95.32 Aligned_cols=52 Identities=33% Similarity=0.626 Sum_probs=44.8
Q ss_pred CccccccccccccCCCe-eEEeCCCCcccHHhHHHHHhcC---CCCCccCcCCCCC
Q 041711 154 GQERCVICLEEFSEGDE-VISLQCSHVHHRHCILKWLVTG---NNCPTCRFTLPCT 205 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~-~~~LpC~H~Fh~~CI~~Wl~~~---~~CPlCR~~i~~~ 205 (210)
+...|+||++.|..++. ++.++|+|.||..||..|+..+ ..||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 45689999999987664 7778999999999999999986 7999999987543
No 20
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.38 E-value=4.1e-14 Score=106.04 Aligned_cols=50 Identities=32% Similarity=0.647 Sum_probs=1.0
Q ss_pred CccccccccccccC-------------CCe--eEEeCCCCcccHHhHHHHHhcCCCCCccCcCCC
Q 041711 154 GQERCVICLEEFSE-------------GDE--VISLQCSHVHHRHCILKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 154 ~~~~C~ICle~~~~-------------~~~--~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~ 203 (210)
+.+.|+||++.|.. ++. +..++|+|.||..||.+||..+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 45689999999975 222 223499999999999999999999999999864
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=4.6e-13 Score=93.36 Aligned_cols=47 Identities=23% Similarity=0.525 Sum_probs=41.8
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~ 203 (210)
....|+||++.|.. +++++|+|.||..||..|+....+||+||.++.
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 45689999999865 557899999999999999999999999999985
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.37 E-value=2.7e-13 Score=104.01 Aligned_cols=47 Identities=34% Similarity=0.856 Sum_probs=41.9
Q ss_pred ccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCCC
Q 041711 155 QERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLPC 204 (210)
Q Consensus 155 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~ 204 (210)
...|+||++.|.. ++.++|||.||..||..|+..+.+||+||.++..
T Consensus 53 ~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 3479999999864 6678999999999999999999999999999854
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=8.1e-13 Score=90.01 Aligned_cols=50 Identities=22% Similarity=0.520 Sum_probs=42.1
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHh---cCCCCCccCcCCCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLV---TGNNCPTCRFTLPCTT 206 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~---~~~~CPlCR~~i~~~~ 206 (210)
+...|+||++.+.. ++.++|+|.||..||..|+. .+..||+||.++...+
T Consensus 19 ~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 19 EEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred cCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 45689999999874 66779999999999999997 3568999999986543
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=6.7e-13 Score=88.98 Aligned_cols=49 Identities=16% Similarity=0.445 Sum_probs=41.3
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHh-cCCCCCccCcCCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLV-TGNNCPTCRFTLPCT 205 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~-~~~~CPlCR~~i~~~ 205 (210)
+...|+||++.+.. ++.++|+|.||..||..|+. .+..||+||.++..+
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 45789999999875 33579999999999999995 467999999998654
No 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.34 E-value=9.1e-13 Score=90.50 Aligned_cols=48 Identities=23% Similarity=0.600 Sum_probs=41.0
Q ss_pred CccccccccccccCCCeeEEeC-CCCcccHHhHHHHHhcC--CCCCccCcCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQ-CSHVHHRHCILKWLVTG--NNCPTCRFTLPC 204 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~Lp-C~H~Fh~~CI~~Wl~~~--~~CPlCR~~i~~ 204 (210)
+...|+||++.|.. ++.++ |+|.||..||..|+..+ ..||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 45689999999875 55688 99999999999999876 689999998643
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.34 E-value=1.1e-12 Score=90.65 Aligned_cols=49 Identities=29% Similarity=0.467 Sum_probs=42.5
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhc-CCCCCccCcCCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVT-GNNCPTCRFTLPCT 205 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~-~~~CPlCR~~i~~~ 205 (210)
+...|+||++.|.+ ++.++|||.||..||..|+.. +.+||+||.++...
T Consensus 7 ~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 45689999999865 667899999999999999987 67999999998543
No 27
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=1.3e-12 Score=90.18 Aligned_cols=51 Identities=24% Similarity=0.561 Sum_probs=43.0
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcC--CCCCccCcCCCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTG--NNCPTCRFTLPCTT 206 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~--~~CPlCR~~i~~~~ 206 (210)
...+|+||++.|..++. ...|+|.||..||.+||+.+ .+||+||++++...
T Consensus 14 ~i~~C~IC~~~i~~g~~--C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQS--CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSCBCSSSCCBCSSSEE--CSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCcCcchhhHcccCCc--cCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 45789999999987543 23899999999999999987 79999999986543
No 28
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.29 E-value=1.2e-12 Score=98.44 Aligned_cols=52 Identities=35% Similarity=0.766 Sum_probs=44.6
Q ss_pred CccccccccccccCC----CeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCCCC
Q 041711 154 GQERCVICLEEFSEG----DEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLPCT 205 (210)
Q Consensus 154 ~~~~C~ICle~~~~~----~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~~ 205 (210)
+...|+||++.|... +.++.++|||.||..||.+|+..+.+||+||..+...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 456899999999753 4457789999999999999999999999999988643
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.29 E-value=1.7e-12 Score=94.33 Aligned_cols=48 Identities=33% Similarity=0.770 Sum_probs=41.6
Q ss_pred CccccccccccccCCCeeEE-eCCCCcccHHhHHHHHhcC-CCCCccCcCCCC
Q 041711 154 GQERCVICLEEFSEGDEVIS-LQCSHVHHRHCILKWLVTG-NNCPTCRFTLPC 204 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~-LpC~H~Fh~~CI~~Wl~~~-~~CPlCR~~i~~ 204 (210)
+...|+||++.|.. ++. ++|||.||..||..|+..+ .+||+||.++..
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 44679999999864 556 7999999999999999988 699999999853
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.28 E-value=3.5e-12 Score=88.82 Aligned_cols=49 Identities=37% Similarity=0.748 Sum_probs=42.0
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhc------CCCCCccCcCCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVT------GNNCPTCRFTLPCT 205 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~------~~~CPlCR~~i~~~ 205 (210)
+...|+||++.|.. ++.++|+|.||..||..|+.. ...||+||..+...
T Consensus 18 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 18 EEVTCPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTTSCTTTCSCCSS---CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred cCCCCcCCChhhCc---ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 45689999999865 447899999999999999988 66899999998643
No 31
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=3.8e-12 Score=84.99 Aligned_cols=51 Identities=24% Similarity=0.553 Sum_probs=41.0
Q ss_pred ccccccccc-cccCCCee-EEeCCCCcccHHhHHHHHhcC-CCCCccCcCCCCC
Q 041711 155 QERCVICLE-EFSEGDEV-ISLQCSHVHHRHCILKWLVTG-NNCPTCRFTLPCT 205 (210)
Q Consensus 155 ~~~C~ICle-~~~~~~~~-~~LpC~H~Fh~~CI~~Wl~~~-~~CPlCR~~i~~~ 205 (210)
+..|+||++ .+...... ..++|||.||..||..|+..+ ..||+||..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 457999999 77665433 456999999999999997754 6899999998543
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.26 E-value=3.7e-12 Score=92.04 Aligned_cols=48 Identities=40% Similarity=0.723 Sum_probs=41.7
Q ss_pred CccccccccccccCCCeeEEe-CCCCcccHHhHHHHHhcCCCCCccCcCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLVTGNNCPTCRFTLPC 204 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~ 204 (210)
+...|+||++.|.. ++.+ +|||.||..||..|+..+.+||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 34679999999865 5566 999999999999999999999999998853
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.25 E-value=9.9e-13 Score=90.83 Aligned_cols=48 Identities=33% Similarity=0.683 Sum_probs=41.3
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhc-------CCCCCccCcCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVT-------GNNCPTCRFTLPC 204 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~-------~~~CPlCR~~i~~ 204 (210)
+...|+||++.|.. ++.++|+|.||..||..|+.. ...||+||..+..
T Consensus 11 ~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 45789999999865 446799999999999999987 5689999998854
No 34
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.8e-12 Score=88.65 Aligned_cols=49 Identities=29% Similarity=0.675 Sum_probs=42.0
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhc------CCCCCccCcCCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVT------GNNCPTCRFTLPCT 205 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~------~~~CPlCR~~i~~~ 205 (210)
+...|+||++.+.. ++.++|+|.||..|+..|+.. ...||+||..+...
T Consensus 18 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 18 EEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 45689999999865 446799999999999999987 67999999998643
No 35
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=6.9e-12 Score=83.13 Aligned_cols=42 Identities=29% Similarity=0.638 Sum_probs=36.3
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhc---CCCCCcc
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVT---GNNCPTC 198 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~---~~~CPlC 198 (210)
+...|+||++.|.+ ++.++|+|.||..||..|+.. +..||+|
T Consensus 19 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45689999999875 567799999999999999983 5689998
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.24 E-value=5.6e-12 Score=92.52 Aligned_cols=49 Identities=29% Similarity=0.707 Sum_probs=42.6
Q ss_pred CccccccccccccCCCeeEEe-CCCCcccHHhHHHHHhcCCCCCccCcCCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLVTGNNCPTCRFTLPCT 205 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~~ 205 (210)
+...|+||++.|.. ++.+ +|||.||..||..|+..+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 45689999999864 5566 9999999999999999999999999998643
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.24 E-value=8.3e-12 Score=88.81 Aligned_cols=46 Identities=24% Similarity=0.638 Sum_probs=40.1
Q ss_pred CccccccccccccCCCeeEEeC-CCCcccHHhHHHHHhcC--CCCCccCcCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQ-CSHVHHRHCILKWLVTG--NNCPTCRFTL 202 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~Lp-C~H~Fh~~CI~~Wl~~~--~~CPlCR~~i 202 (210)
+...|+||++.|.. ++.++ |||.||..||..|+..+ ..||+||..+
T Consensus 12 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 56789999999874 56788 99999999999999754 5899999987
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.23 E-value=5.3e-12 Score=94.87 Aligned_cols=48 Identities=25% Similarity=0.584 Sum_probs=41.3
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCC-CCCccCcCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGN-NCPTCRFTLPC 204 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~-~CPlCR~~i~~ 204 (210)
+...|+||++.|.. ++.++|||.||..||..|+..+. .||+||.++..
T Consensus 51 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 34579999999874 66789999999999999998654 99999999865
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.22 E-value=3.9e-12 Score=95.68 Aligned_cols=52 Identities=37% Similarity=0.837 Sum_probs=44.4
Q ss_pred CccccccccccccC----CCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCCCC
Q 041711 154 GQERCVICLEEFSE----GDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLPCT 205 (210)
Q Consensus 154 ~~~~C~ICle~~~~----~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~~ 205 (210)
+...|+||++.|.. +...+.++|+|.||..||.+|+..+.+||+||.++..+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 45689999999975 23456779999999999999999999999999998643
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=9.8e-12 Score=80.72 Aligned_cols=42 Identities=31% Similarity=0.865 Sum_probs=35.5
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHh---cCCCCCcc
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLV---TGNNCPTC 198 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~---~~~~CPlC 198 (210)
+...|+||++.+.. ++.++|+|.||..||..|+. .+.+||+|
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45689999999976 34679999999999999965 45789998
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=1e-11 Score=91.22 Aligned_cols=48 Identities=33% Similarity=0.749 Sum_probs=40.6
Q ss_pred ccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCC---CCCccCcCCCCC
Q 041711 155 QERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGN---NCPTCRFTLPCT 205 (210)
Q Consensus 155 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~---~CPlCR~~i~~~ 205 (210)
...|+||++.|.. ++.++|||.||..||..|+..+. .||+||.++...
T Consensus 21 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 4579999999865 44579999999999999998754 899999988643
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.16 E-value=1.9e-11 Score=95.21 Aligned_cols=48 Identities=25% Similarity=0.566 Sum_probs=41.5
Q ss_pred ccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCC-CCCccCcCCCCC
Q 041711 155 QERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGN-NCPTCRFTLPCT 205 (210)
Q Consensus 155 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~-~CPlCR~~i~~~ 205 (210)
...|+||++.|.. ++.++|+|.||..||..|+.... .||+||.++...
T Consensus 78 ~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4579999999865 56789999999999999999765 899999998654
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.16 E-value=2e-11 Score=96.12 Aligned_cols=47 Identities=32% Similarity=0.737 Sum_probs=40.6
Q ss_pred CccccccccccccCCCeeEEe-CCCCcccHHhHHHHHhc-CCCCCccCcCCC
Q 041711 154 GQERCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLVT-GNNCPTCRFTLP 203 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~-~~~CPlCR~~i~ 203 (210)
....|+||++.|.. ++.+ +|+|.||..||..|+.. +..||+||.++.
T Consensus 53 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 44689999999875 4555 99999999999999997 678999999884
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.13 E-value=2.8e-11 Score=90.27 Aligned_cols=48 Identities=27% Similarity=0.567 Sum_probs=41.6
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCC-CCCccCcCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGN-NCPTCRFTLPC 204 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~-~CPlCR~~i~~ 204 (210)
+...|+||++.+.. ++.++|+|.||..||..|+..+. +||+||.++..
T Consensus 17 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 45689999999865 56789999999999999998865 99999998854
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.12 E-value=2.7e-11 Score=89.91 Aligned_cols=48 Identities=31% Similarity=0.739 Sum_probs=41.5
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhc-CCCCCccCcCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVT-GNNCPTCRFTLPC 204 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~-~~~CPlCR~~i~~ 204 (210)
+...|+||++.+.. ++.++|||.||..||..|+.. +.+||+||.++..
T Consensus 22 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 34679999999864 566899999999999999997 6799999999854
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.10 E-value=1.2e-11 Score=91.69 Aligned_cols=47 Identities=28% Similarity=0.646 Sum_probs=40.7
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhc-CCCCCccCcCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVT-GNNCPTCRFTLP 203 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~-~~~CPlCR~~i~ 203 (210)
+...|+||++.|.. ++.++|||.||..||..|+.. +..||+||..+.
T Consensus 14 ~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 45689999999864 667899999999999999987 568999999874
No 47
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.10 E-value=4.7e-11 Score=79.85 Aligned_cols=47 Identities=26% Similarity=0.490 Sum_probs=40.0
Q ss_pred CccccccccccccCCCeeEEe--CCCCc-ccHHhHHHHHhcCCCCCccCcCCC
Q 041711 154 GQERCVICLEEFSEGDEVISL--QCSHV-HHRHCILKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L--pC~H~-Fh~~CI~~Wl~~~~~CPlCR~~i~ 203 (210)
++..|.||++...+ ...+ ||||. ||..|+..|...+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 45689999998654 4455 99999 899999999998899999999884
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.09 E-value=7.4e-11 Score=83.25 Aligned_cols=48 Identities=21% Similarity=0.200 Sum_probs=43.1
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLPC 204 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~ 204 (210)
+...|+||++.|.+ +++++|||.|+..||..|+..+.+||+||.++..
T Consensus 13 ~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchhcC---CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 46789999999875 7788999999999999999988999999998854
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.08 E-value=7.5e-11 Score=85.82 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=43.7
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLPCT 205 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~~ 205 (210)
+...|+||++.|.+ +++++|||.|+..||..|+..+.+||+||.++...
T Consensus 28 ~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 28 DEFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp TTTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred HhhCCcCccCcccC---CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 56789999999875 77889999999999999999888999999998643
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.05 E-value=1.4e-10 Score=84.07 Aligned_cols=49 Identities=18% Similarity=0.131 Sum_probs=43.5
Q ss_pred CccccccccccccCCCeeEEeCCC-CcccHHhHHHHHhcCCCCCccCcCCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCS-HVHHRHCILKWLVTGNNCPTCRFTLPCT 205 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~-H~Fh~~CI~~Wl~~~~~CPlCR~~i~~~ 205 (210)
+...|+||++.|.+ +++++|| |.|+..||..|+..+.+||+||.++...
T Consensus 21 ~~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp TTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred HhcCCcCccccccC---CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 45789999999875 7788999 9999999999999888999999998643
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=4.5e-11 Score=77.73 Aligned_cols=48 Identities=27% Similarity=0.488 Sum_probs=39.8
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCCCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLPCTTT 207 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~~~~ 207 (210)
+...|+||++.|.. ++.|+|+|.||..||..| ...||+||..+.....
T Consensus 5 ~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 5 QFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGAD 52 (56)
T ss_dssp CCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred cCCCceEeCCccCC---eEEcCCCCcccHHHHccC---CCCCCcCCcEeecCCc
Confidence 45679999999875 457899999999999884 6789999999865544
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.03 E-value=1.4e-10 Score=102.88 Aligned_cols=47 Identities=30% Similarity=0.715 Sum_probs=41.0
Q ss_pred ccccccccccccCCCeeEEeCCCCcccHHhHHHHHh-cCCCCCccCcCCCC
Q 041711 155 QERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLV-TGNNCPTCRFTLPC 204 (210)
Q Consensus 155 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~-~~~~CPlCR~~i~~ 204 (210)
...|+||++.+.. ++.+||||.||..|+..|+. .+.+||+||.++..
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3589999999854 67789999999999999999 67899999998853
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.02 E-value=9.9e-11 Score=90.24 Aligned_cols=47 Identities=23% Similarity=0.500 Sum_probs=40.6
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCC-CCCccCcCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGN-NCPTCRFTLP 203 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~-~CPlCR~~i~ 203 (210)
+...|+||++.+.. ++.++|||.||..||..|+..+. +||+||.++.
T Consensus 30 ~~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 30 AKYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 45689999999865 46689999999999999998765 8999999864
No 54
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.02 E-value=1.7e-10 Score=80.23 Aligned_cols=51 Identities=24% Similarity=0.543 Sum_probs=39.8
Q ss_pred CccccccccccccCCCeeEEe--CCCCcccHHhHHHHHhc-CCCCCccCcCCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISL--QCSHVHHRHCILKWLVT-GNNCPTCRFTLPCT 205 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L--pC~H~Fh~~CI~~Wl~~-~~~CPlCR~~i~~~ 205 (210)
++.+|+||++.+...+ +..+ +|||.||..|+..++.. ...||+||.++...
T Consensus 10 ~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred cCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 5568999999986533 2234 49999999999998854 56899999988543
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.02 E-value=1.5e-10 Score=77.10 Aligned_cols=47 Identities=19% Similarity=0.485 Sum_probs=39.5
Q ss_pred CccccccccccccCCCeeEEe--CCCCc-ccHHhHHHHHhcCCCCCccCcCCC
Q 041711 154 GQERCVICLEEFSEGDEVISL--QCSHV-HHRHCILKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L--pC~H~-Fh~~CI~~Wl~~~~~CPlCR~~i~ 203 (210)
....|.||++...+ ...+ ||||. ||..|+..|...+..||+||.++.
T Consensus 6 ~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 45689999998643 3344 99998 999999999988889999999884
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.97 E-value=1.5e-10 Score=79.45 Aligned_cols=44 Identities=20% Similarity=0.676 Sum_probs=37.6
Q ss_pred CccccccccccccCCCeeEEeCCCCc-ccHHhHHHHHhcCCCCCccCcCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHV-HHRHCILKWLVTGNNCPTCRFTLPC 204 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~-Fh~~CI~~Wl~~~~~CPlCR~~i~~ 204 (210)
+...|+||++.+.+ +..+||+|. ||..|+..| ..||+||.++..
T Consensus 23 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 34679999998754 667899999 999999998 889999998853
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=1.2e-10 Score=86.74 Aligned_cols=46 Identities=24% Similarity=0.564 Sum_probs=39.6
Q ss_pred CccccccccccccCCCeeEEe-CCCCcccHHhHHHHHhcCCCCCccCcCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLVTGNNCPTCRFTLPC 204 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~ 204 (210)
+...|+||++.|.. ++.+ +|||.||..||..|+. ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 34679999999865 5577 9999999999999998 889999998853
No 58
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.88 E-value=1.9e-10 Score=99.91 Aligned_cols=53 Identities=26% Similarity=0.592 Sum_probs=41.4
Q ss_pred cCccccccccccccC-CCee----EEeCCCCcccHHhHHHHHhcC-----------CCCCccCcCCCCC
Q 041711 153 LGQERCVICLEEFSE-GDEV----ISLQCSHVHHRHCILKWLVTG-----------NNCPTCRFTLPCT 205 (210)
Q Consensus 153 ~~~~~C~ICle~~~~-~~~~----~~LpC~H~Fh~~CI~~Wl~~~-----------~~CPlCR~~i~~~ 205 (210)
++..+|+||++.+.. ++.+ ...+|+|.||..|+.+||... .+||.||.+|...
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 356789999999987 3322 123799999999999999752 3699999998654
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.87 E-value=1.1e-09 Score=91.86 Aligned_cols=48 Identities=19% Similarity=0.014 Sum_probs=41.6
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcC-CCCCccCcCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTG-NNCPTCRFTLPC 204 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~-~~CPlCR~~i~~ 204 (210)
....|+||++.|.+ +++++|||+||..||..|+..+ .+||+||.++..
T Consensus 207 ~~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 56789999999865 7788999999999999999875 469999998853
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.85 E-value=1.4e-09 Score=85.71 Aligned_cols=48 Identities=27% Similarity=0.573 Sum_probs=41.4
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcC-CCCCccCcCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTG-NNCPTCRFTLPC 204 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~-~~CPlCR~~i~~ 204 (210)
+...|+||++.|.. ++.++|||.||..||..|+..+ .+||+||.++..
T Consensus 17 ~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 45689999999865 5668999999999999999875 499999998854
No 61
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.83 E-value=2.5e-09 Score=70.63 Aligned_cols=48 Identities=31% Similarity=0.688 Sum_probs=37.5
Q ss_pred CccccccccccccCCCeeEEeCCC--C---cccHHhHHHHHhc--CCCCCccCcCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCS--H---VHHRHCILKWLVT--GNNCPTCRFTLPC 204 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~--H---~Fh~~CI~~Wl~~--~~~CPlCR~~i~~ 204 (210)
+...|.||+++. ++.. ++||. | .||..|+.+|+.. +.+||+||..+..
T Consensus 5 ~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 456899999983 2333 57865 4 9999999999985 5689999998753
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=1.6e-09 Score=77.72 Aligned_cols=45 Identities=24% Similarity=0.547 Sum_probs=38.3
Q ss_pred CccccccccccccCCCeeEEeC-CCCcccHHhHHHHHhcC------CCCCc--cCcC
Q 041711 154 GQERCVICLEEFSEGDEVISLQ-CSHVHHRHCILKWLVTG------NNCPT--CRFT 201 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~Lp-C~H~Fh~~CI~~Wl~~~------~~CPl--CR~~ 201 (210)
....|+||++.|.+ +++++ |||.|+..||..|+..+ .+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 45689999999875 77785 99999999999999864 48999 9865
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=2.4e-09 Score=73.46 Aligned_cols=44 Identities=20% Similarity=0.677 Sum_probs=36.1
Q ss_pred ccccccccccccCCCeeEEeCCCCc-ccHHhHHHHHhcCCCCCccCcCCCCC
Q 041711 155 QERCVICLEEFSEGDEVISLQCSHV-HHRHCILKWLVTGNNCPTCRFTLPCT 205 (210)
Q Consensus 155 ~~~C~ICle~~~~~~~~~~LpC~H~-Fh~~CI~~Wl~~~~~CPlCR~~i~~~ 205 (210)
...|+||++.+.+ +..+||+|. ||..|+.. ...||+||.++...
T Consensus 25 ~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 4579999999754 556799999 99999964 47899999998543
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=5.6e-09 Score=70.54 Aligned_cols=44 Identities=25% Similarity=0.583 Sum_probs=36.4
Q ss_pred CccccccccccccCCCeeEEeCCCCc-ccHHhHHHHHhcCCCCCccCcCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHV-HHRHCILKWLVTGNNCPTCRFTLPC 204 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~-Fh~~CI~~Wl~~~~~CPlCR~~i~~ 204 (210)
+...|.||++...+ +..+||+|. ||..|+.. ...||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 45689999998643 667799999 99999984 5799999998843
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.75 E-value=5.4e-09 Score=83.57 Aligned_cols=48 Identities=19% Similarity=0.005 Sum_probs=41.9
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcC-CCCCccCcCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTG-NNCPTCRFTLPC 204 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~-~~CPlCR~~i~~ 204 (210)
....|+||++.|.+ +++++|||.|+..||..|+..+ .+||+||.++..
T Consensus 105 ~~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HhhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 56789999999875 7788999999999999999874 579999998854
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.71 E-value=3.4e-09 Score=73.69 Aligned_cols=42 Identities=26% Similarity=0.628 Sum_probs=35.6
Q ss_pred ccccccccccccCCCeeEEeCCCCc-ccHHhHHHHHhcCCCCCccCcCCC
Q 041711 155 QERCVICLEEFSEGDEVISLQCSHV-HHRHCILKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 155 ~~~C~ICle~~~~~~~~~~LpC~H~-Fh~~CI~~Wl~~~~~CPlCR~~i~ 203 (210)
...|.||++.+.+ +..+||||. ||..|+..| ..||+||.++.
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 4579999998654 667899999 999999887 49999999874
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.64 E-value=1.2e-08 Score=72.72 Aligned_cols=48 Identities=23% Similarity=0.585 Sum_probs=38.3
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcC--------CCCCc--cCcC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTG--------NNCPT--CRFT 201 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~--------~~CPl--CR~~ 201 (210)
+..+|+||++++...+.....+|+|.||..|+..++..+ ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 346799999998765544444899999999999998742 37999 9987
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.57 E-value=2.3e-08 Score=66.16 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=40.8
Q ss_pred cccccccccccCCCeeEEe-CCCCcccHHhHHHHHhcCCCCCccCcCCCC
Q 041711 156 ERCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLVTGNNCPTCRFTLPC 204 (210)
Q Consensus 156 ~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~ 204 (210)
..|+||++.+.+ ++++ +|||+|.+.||.+|+..+.+||+++.++..
T Consensus 4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 469999999874 6677 899999999999999988899999998854
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.52 E-value=2.1e-08 Score=87.80 Aligned_cols=43 Identities=23% Similarity=0.714 Sum_probs=37.4
Q ss_pred CccccccccccccCCCeeEEeCCCCc-ccHHhHHHHHhcCCCCCccCcCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHV-HHRHCILKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~-Fh~~CI~~Wl~~~~~CPlCR~~i~ 203 (210)
+...|+||++.+.. +..+||||. ||..|+..| ..||+||.++.
T Consensus 294 ~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 45689999999864 667899999 999999988 78999999885
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.40 E-value=1.3e-07 Score=79.49 Aligned_cols=48 Identities=27% Similarity=0.564 Sum_probs=39.1
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcC--CCCCc--cCcCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTG--NNCPT--CRFTLP 203 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~--~~CPl--CR~~i~ 203 (210)
....|+||++.|.+ .++.+.|||.||..||..|+..+ .+||+ ||..+.
T Consensus 180 ~el~CPIcl~~f~D--PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYEA--PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCSS--EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcccC--CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 45679999999964 34335999999999999999864 47999 998774
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.38 E-value=2.6e-07 Score=66.43 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=37.1
Q ss_pred ccccccccccCCCeeEEeCCCCcccHHhHHHHHhc-CCCCCccCcCCC
Q 041711 157 RCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVT-GNNCPTCRFTLP 203 (210)
Q Consensus 157 ~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~-~~~CPlCR~~i~ 203 (210)
-|.+|--.|.. ..+.+||+|+||.+|+..|.++ .++||+|+.++.
T Consensus 3 fC~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 37788777643 5677899999999999999866 579999999873
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.10 E-value=1.3e-06 Score=72.74 Aligned_cols=51 Identities=24% Similarity=0.562 Sum_probs=41.3
Q ss_pred ccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCC--CCCccCcCCCCCCC
Q 041711 155 QERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGN--NCPTCRFTLPCTTT 207 (210)
Q Consensus 155 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~--~CPlCR~~i~~~~~ 207 (210)
-..|+||.+.+..|.. .-.|+|.||..|+..|++.+. .||.|+...+...+
T Consensus 180 i~~C~iC~~iv~~g~~--C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 180 VKICNICHSLLIQGQS--CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp CCBCTTTCSBCSSCEE--CSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCcCcchhhHHhCCcc--cCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 4679999999887542 225999999999999998754 89999998876543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.46 E-value=0.0014 Score=46.38 Aligned_cols=49 Identities=29% Similarity=0.653 Sum_probs=40.7
Q ss_pred CccccccccccccCCCeeEEeCC-CCcccHHhHHHHHhcCCCCCccCcCCCCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQC-SHVHHRHCILKWLVTGNNCPTCRFTLPCTTT 207 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC-~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~~~~ 207 (210)
+...|-.|--.... .+.| .|+.|..|+...|+....||+|..++|+...
T Consensus 27 G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 27 GPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLR 76 (99)
T ss_dssp CCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSC
T ss_pred CcccChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcCCccee
Confidence 55679999876543 4567 5999999999999999999999999987643
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.40 E-value=0.0087 Score=39.67 Aligned_cols=45 Identities=22% Similarity=0.527 Sum_probs=33.6
Q ss_pred CccccccccccccCCCeeEEe-CCCCcccHHhHHHHHhcCC----CCCccCcCC
Q 041711 154 GQERCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLVTGN----NCPTCRFTL 202 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~~~----~CPlCR~~i 202 (210)
....|.||.+. ++ +..- .|...||..|+.+.|...+ .||.|+...
T Consensus 11 ~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 45679999753 44 3333 8999999999999887753 699997643
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.98 E-value=0.014 Score=41.16 Aligned_cols=35 Identities=11% Similarity=0.295 Sum_probs=26.2
Q ss_pred ccccccccccccCCCeeEEeCCCCcccHHhHHH-HH
Q 041711 155 QERCVICLEEFSEGDEVISLQCSHVHHRHCILK-WL 189 (210)
Q Consensus 155 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~-Wl 189 (210)
+-.|.||++.+........+.|+|.||..|+.. |.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 457999998754333334479999999999998 53
No 76
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=90.59 E-value=0.13 Score=33.20 Aligned_cols=44 Identities=23% Similarity=0.610 Sum_probs=31.2
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCC----CCCccCc
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGN----NCPTCRF 200 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~----~CPlCR~ 200 (210)
....|.||... ++.+..-.|...||..|+.+-+...+ .||.|+.
T Consensus 10 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 45679999863 33222227999999999998665432 6999965
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=90.30 E-value=0.2 Score=34.68 Aligned_cols=31 Identities=23% Similarity=0.658 Sum_probs=22.4
Q ss_pred CccccccccccccCCCeeEEeC---CCCcccHHhHHHH
Q 041711 154 GQERCVICLEEFSEGDEVISLQ---CSHVHHRHCILKW 188 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~Lp---C~H~Fh~~CI~~W 188 (210)
.+..|.||- .+..++ .+| |+-+||..|+.+-
T Consensus 14 ~D~~C~VC~-~~t~~~---l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCE-VWTAES---LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTC-CCCSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCccc-cccccc---eeccccccccccHhhcccc
Confidence 567899994 343333 334 6899999999996
No 78
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.58 E-value=0.064 Score=34.80 Aligned_cols=48 Identities=21% Similarity=0.477 Sum_probs=33.8
Q ss_pred CccccccccccccCCCeeEEe-CCCCcccHHhHHHHHh-----cCCCCCccCcC
Q 041711 154 GQERCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLV-----TGNNCPTCRFT 201 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~-----~~~~CPlCR~~ 201 (210)
+...|+||...+..+...+.- .|..-||..|+.--.. .+-.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 556799999988654434334 8999999999864322 23479999764
No 79
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.30 E-value=0.16 Score=31.33 Aligned_cols=43 Identities=26% Similarity=0.654 Sum_probs=29.0
Q ss_pred ccccccccccCCCeeEEe-CCCCcccHHhHHHHHhcCC----CCCccCc
Q 041711 157 RCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLVTGN----NCPTCRF 200 (210)
Q Consensus 157 ~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~~~----~CPlCR~ 200 (210)
.|.||...-..++ +..- .|...||..|+.+=+...+ .||.|+.
T Consensus 2 ~C~vC~~~~~~~~-ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDK-LILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSC-CEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCC-EEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4888886532222 3223 7999999999987555432 5999965
No 80
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.30 E-value=0.17 Score=35.35 Aligned_cols=48 Identities=27% Similarity=0.529 Sum_probs=33.7
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCC----CCCccCcCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGN----NCPTCRFTLPC 204 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~----~CPlCR~~i~~ 204 (210)
....|.+|... ++-+..-.|.-.||..|+.+=+...+ .||.|+..-+.
T Consensus 24 n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~ 75 (88)
T 1fp0_A 24 SATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDL 75 (88)
T ss_dssp SSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSS
T ss_pred CCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCcc
Confidence 45689999864 44222227899999999988776533 69999865433
No 81
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=89.03 E-value=0.026 Score=45.21 Aligned_cols=71 Identities=11% Similarity=-0.000 Sum_probs=45.0
Q ss_pred CCCCCceeeeEEeec-cCCCCCcceeeecccccchhhhhhhhhhhcccCCCchhHHHHH---HHhhhhccCcChHHHHHH
Q 041711 26 RNLSPGFYFIIQIFN-TDELIHPQVRVRIPLNAQEHTFHLKLHEIFFEDSDQDSFLEDL---RANLLSTQGLGECAQEIL 101 (210)
Q Consensus 26 ~~~~~~fi~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dd~~~~~~~~~l---~~~ll~~~~l~~~~~e~l 101 (210)
.+...++|.||+|.. |+|..| .+++|++|..+ .|++++.+.......+ ...-++++++...+.+.|
T Consensus 100 ~~~~~gkIaLV~RG~~CsF~~K-------v~nAq~aGA~a---vIIyNn~~~g~~~~~m~~~~~~~IPsv~Is~~~G~~L 169 (194)
T 3icu_A 100 STVQVSWLALIQRGGGCTFADK-------IHLAYERGASG---AVIFNFPGTRNEVIPMSHPGAVDIVAIMIGNLKGTKI 169 (194)
T ss_dssp SSCBCCEEEEEESCTTCCHHHH-------HHHHHHTTCSE---EEEECCTTCTTCCCCCCCTTCCSSEEEEECHHHHHHH
T ss_pred cccCCCeEEEEECCCCcCHHHH-------HHHHHHCCCcE---EEEEeCCCCCCceeeecCCCCCceeEEEECHHHHHHH
Confidence 445678999999999 999533 55999999988 5555542111000000 012357777888888877
Q ss_pred HHHHH
Q 041711 102 MKTIL 106 (210)
Q Consensus 102 ~~~v~ 106 (210)
+..+.
T Consensus 170 ~~~L~ 174 (194)
T 3icu_A 170 LQSIQ 174 (194)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 82
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.01 E-value=0.044 Score=34.77 Aligned_cols=44 Identities=30% Similarity=0.588 Sum_probs=30.7
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCC----CCCccCc
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGN----NCPTCRF 200 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~----~CPlCR~ 200 (210)
.+..|.||... ++.+..-.|...||..|+.+-+...+ .||.|+.
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 56779999874 33222227999999999997665432 5888854
No 83
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=86.53 E-value=0.14 Score=33.05 Aligned_cols=46 Identities=26% Similarity=0.515 Sum_probs=31.6
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCC----CCCccCcCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGN----NCPTCRFTL 202 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~----~CPlCR~~i 202 (210)
....|.||.+. ++.+..-.|...||..|+.+-+...+ .||.|+...
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 45679999853 33222127899999999997665432 599997654
No 84
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=84.26 E-value=0.27 Score=34.10 Aligned_cols=49 Identities=22% Similarity=0.443 Sum_probs=31.8
Q ss_pred CccccccccccccCCCeeEEe--CCCCcccHHhHHHHHhc--CCCCCccCcCC
Q 041711 154 GQERCVICLEEFSEGDEVISL--QCSHVHHRHCILKWLVT--GNNCPTCRFTL 202 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L--pC~H~Fh~~CI~~Wl~~--~~~CPlCR~~i 202 (210)
+...|.||...-+..+...++ .|.-.||..|+.+-+.- .=.||.|....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 567899998753222222233 79999999999864321 12699997654
No 85
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=84.22 E-value=0.25 Score=32.98 Aligned_cols=49 Identities=20% Similarity=0.351 Sum_probs=33.8
Q ss_pred CccccccccccccCCCeeEEe-CCCCcccHHhHHHHHhc----CCCCCccCcCCC
Q 041711 154 GQERCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLVT----GNNCPTCRFTLP 203 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~----~~~CPlCR~~i~ 203 (210)
+...|.||..... ++..+.- .|.--||..|+..-... .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 4456999987753 3333333 89999999999865543 236999987653
No 86
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=84.04 E-value=0.052 Score=34.91 Aligned_cols=47 Identities=28% Similarity=0.554 Sum_probs=32.5
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCC----CCCccCcCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGN----NCPTCRFTLP 203 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~----~CPlCR~~i~ 203 (210)
.+..|.||... ++-+..-.|...||..|+.+-+...+ .||.|+....
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 35679999874 44222227999999999997665432 5999976543
No 87
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=83.69 E-value=0.52 Score=30.48 Aligned_cols=50 Identities=26% Similarity=0.573 Sum_probs=33.9
Q ss_pred CccccccccccccCCCeeEEe--CCCCcccHHhHHHHHhc-------CCCCCccCcCCC
Q 041711 154 GQERCVICLEEFSEGDEVISL--QCSHVHHRHCILKWLVT-------GNNCPTCRFTLP 203 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L--pC~H~Fh~~CI~~Wl~~-------~~~CPlCR~~i~ 203 (210)
+...|.||.......+...++ .|.-.||..|+.+-+.. .=.||.|+....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 567899999875442323333 89999999999875432 226999976543
No 88
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=83.27 E-value=0.89 Score=44.45 Aligned_cols=48 Identities=17% Similarity=0.121 Sum_probs=41.7
Q ss_pred CccccccccccccCCCeeEEeCCC-CcccHHhHHHHHhcCCCCCccCcCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCS-HVHHRHCILKWLVTGNNCPTCRFTLPC 204 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~-H~Fh~~CI~~Wl~~~~~CPlCR~~i~~ 204 (210)
+.-.|+|-++-+.+ ++++|-| +.|-+.+|.+||..+.+||+=|.++..
T Consensus 890 ~~F~cPIs~~lM~D---PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 890 DEFLDPLMYTIMKD---PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp GGGBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HHhCCcchhhHHhC---CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 56679999999865 7889987 699999999999999999999988853
No 89
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=83.12 E-value=0.13 Score=33.69 Aligned_cols=44 Identities=23% Similarity=0.632 Sum_probs=31.4
Q ss_pred CccccccccccccCCCeeEEe-CCCCcccHHhHHHHHhcCC----CCCccCcC
Q 041711 154 GQERCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLVTGN----NCPTCRFT 201 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~~~----~CPlCR~~ 201 (210)
.+..|.||... ++ +..- .|...||..|+.+-+...+ .||.|...
T Consensus 7 ~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 45689999864 33 3333 7999999999987665432 59999654
No 90
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=82.91 E-value=0.32 Score=35.09 Aligned_cols=46 Identities=22% Similarity=0.418 Sum_probs=30.8
Q ss_pred ccccccccccccCCCeeEEe-CCCCcccHHhHHHHHhcCC----CCCccCc
Q 041711 155 QERCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLVTGN----NCPTCRF 200 (210)
Q Consensus 155 ~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~~~----~CPlCR~ 200 (210)
-..|.||...-.+.+.+..- .|...||..|+.+-|...+ .||.|+.
T Consensus 61 C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 61 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 34688888642222233333 7999999999987666532 6999975
No 91
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=81.16 E-value=0.55 Score=33.13 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=28.9
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHhHHHHHhcC---CCCCccCc
Q 041711 156 ERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTG---NNCPTCRF 200 (210)
Q Consensus 156 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~---~~CPlCR~ 200 (210)
..| ||-.....+..+..=.|.-.||..|+..=+..- -.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 887765544322222899999999997633322 37999974
No 92
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=80.16 E-value=1.9 Score=32.53 Aligned_cols=43 Identities=30% Similarity=0.603 Sum_probs=31.5
Q ss_pred CccccccccccccCCCeeEEe-CCCCcccHHhHHHHHh---------c--CCCCCccCc
Q 041711 154 GQERCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLV---------T--GNNCPTCRF 200 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~---------~--~~~CPlCR~ 200 (210)
.++.|.+|-+. |+ +... .|...||..||.+-+. . .=.||+|+.
T Consensus 62 ~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 45679999864 44 4334 8999999999997663 1 226999975
No 93
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=79.92 E-value=1.4 Score=28.59 Aligned_cols=33 Identities=27% Similarity=0.535 Sum_probs=24.4
Q ss_pred CccccccccccccCCCeeEEe--CCCCcccHHhHH
Q 041711 154 GQERCVICLEEFSEGDEVISL--QCSHVHHRHCIL 186 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L--pC~H~Fh~~CI~ 186 (210)
....|.+|...+..++..+.- .|.--||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 456899999998766544333 699999999983
No 94
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=78.56 E-value=0.54 Score=33.64 Aligned_cols=37 Identities=16% Similarity=0.317 Sum_probs=25.5
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHh
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLV 190 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~ 190 (210)
.+..|.||.+.=...+-+.--.|...||..|+...+.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 4578999987622111133237999999999988765
No 95
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.10 E-value=0.18 Score=35.35 Aligned_cols=47 Identities=23% Similarity=0.518 Sum_probs=32.2
Q ss_pred CccccccccccccCCCeeEEe-CCCCcccHHhHHHHHhcCC----CCCccCcC
Q 041711 154 GQERCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLVTGN----NCPTCRFT 201 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~~~----~CPlCR~~ 201 (210)
+...|.||...-.. +.+..- .|...||..|+.+=|...+ .||.|+..
T Consensus 15 ~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 45679999876432 223333 7999999999986555432 59999653
No 96
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=76.73 E-value=0.34 Score=32.83 Aligned_cols=43 Identities=26% Similarity=0.519 Sum_probs=27.4
Q ss_pred ccccccccccCCCeeEEe-CCCCcccHHhHHHHHhcC-----CCCCccCc
Q 041711 157 RCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLVTG-----NNCPTCRF 200 (210)
Q Consensus 157 ~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~~-----~~CPlCR~ 200 (210)
.|.||...-.. +.+..- .|...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 46666654322 222222 799999999999876653 26999975
No 97
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.38 E-value=2.1 Score=28.73 Aligned_cols=47 Identities=19% Similarity=0.454 Sum_probs=31.0
Q ss_pred ccccccccccccCCCeeEEe-CCCCcccHHhHHHHHh-----cCCCCCccCcCC
Q 041711 155 QERCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLV-----TGNNCPTCRFTL 202 (210)
Q Consensus 155 ~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~-----~~~~CPlCR~~i 202 (210)
...| ||...+..+...+.- .|..-||..|+.---. ..-.||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3456 898887533333333 8999999999953211 234799998754
No 98
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=75.85 E-value=0.66 Score=35.78 Aligned_cols=46 Identities=24% Similarity=0.465 Sum_probs=31.2
Q ss_pred CccccccccccccCCCeeEEe-CCCCcccHHhHHHHHh-----cCCCCCccCc
Q 041711 154 GQERCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLV-----TGNNCPTCRF 200 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~-----~~~~CPlCR~ 200 (210)
+...| ||......+...+.. .|..-||..|+.---. ..-.||.|+.
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 44578 999887544434444 8999999999953211 1347999975
No 99
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=74.73 E-value=0.31 Score=33.81 Aligned_cols=49 Identities=16% Similarity=0.446 Sum_probs=33.4
Q ss_pred CccccccccccccCC-CeeEEe-CCCCcccHHhHHHHHhc--------CCCCCccCcCC
Q 041711 154 GQERCVICLEEFSEG-DEVISL-QCSHVHHRHCILKWLVT--------GNNCPTCRFTL 202 (210)
Q Consensus 154 ~~~~C~ICle~~~~~-~~~~~L-pC~H~Fh~~CI~~Wl~~--------~~~CPlCR~~i 202 (210)
....|.||...-... ..+..- .|...||..|+.+-|.. .=.||.|+...
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 345799999764322 223333 89999999999887652 12699997654
No 100
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=74.66 E-value=3 Score=25.59 Aligned_cols=43 Identities=14% Similarity=0.279 Sum_probs=28.3
Q ss_pred ccccccccccCCCeeEEe--CCCCcccHHhHHHH----HhcCCCCCccC
Q 041711 157 RCVICLEEFSEGDEVISL--QCSHVHHRHCILKW----LVTGNNCPTCR 199 (210)
Q Consensus 157 ~C~ICle~~~~~~~~~~L--pC~H~Fh~~CI~~W----l~~~~~CPlCR 199 (210)
.|.||...+..++..+.- .|..-||..|+.-- ...+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 478898888654433332 48889999998532 12456899985
No 101
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.13 E-value=0.65 Score=31.36 Aligned_cols=43 Identities=21% Similarity=0.444 Sum_probs=28.8
Q ss_pred ccccccccccCCCeeEEe-CCCCcccHHhHHHHHhcC-----CCCCccCc
Q 041711 157 RCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLVTG-----NNCPTCRF 200 (210)
Q Consensus 157 ~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~~-----~~CPlCR~ 200 (210)
.|.||...=..++ +..- .|...||..|+.+=|... =.||.|+.
T Consensus 28 ~C~vC~~~~~~~~-ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNM-QLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTT-EEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCC-EEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 6888876422223 3333 899999999998765542 25999864
No 102
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=71.89 E-value=5.3 Score=28.48 Aligned_cols=33 Identities=27% Similarity=0.583 Sum_probs=22.1
Q ss_pred Ccccccccccccc-----CCCeeEEe-CCCCcccHHhHH
Q 041711 154 GQERCVICLEEFS-----EGDEVISL-QCSHVHHRHCIL 186 (210)
Q Consensus 154 ~~~~C~ICle~~~-----~~~~~~~L-pC~H~Fh~~CI~ 186 (210)
....|.+|+..=. .++.+..- .|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 3457999987631 12233333 799999999995
No 103
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=71.83 E-value=3.7 Score=30.47 Aligned_cols=43 Identities=28% Similarity=0.564 Sum_probs=29.9
Q ss_pred CccccccccccccCCCeeEEe-CCCCcccHHhHHHHH------hc-----CCCCCccCc
Q 041711 154 GQERCVICLEEFSEGDEVISL-QCSHVHHRHCILKWL------VT-----GNNCPTCRF 200 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl------~~-----~~~CPlCR~ 200 (210)
.++.|.||-+. ..+..- .|-..||..||.+-+ .. .=.|++|+.
T Consensus 56 ~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 44579999864 334333 789999999999752 11 127999965
No 104
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=70.66 E-value=0.81 Score=30.23 Aligned_cols=43 Identities=26% Similarity=0.519 Sum_probs=27.7
Q ss_pred ccccccccccCCCeeEEe-CCCCcccHHhHHHHHhcC-----CCCCccCc
Q 041711 157 RCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLVTG-----NNCPTCRF 200 (210)
Q Consensus 157 ~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~~-----~~CPlCR~ 200 (210)
.|.||...-.. ..+..- .|...||..|+.+=|... =.||.|+.
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 56777653222 223333 799999999999766542 16999975
No 105
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=69.19 E-value=3.4 Score=28.38 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=25.8
Q ss_pred CccccccccccccCCCeeEEe-CCCCcccHHhHHHH
Q 041711 154 GQERCVICLEEFSEGDEVISL-QCSHVHHRHCILKW 188 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~W 188 (210)
+...|.+|...|..-..--.. .||.+||..|....
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 456799999999865433333 79999999997543
No 106
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=68.66 E-value=4.2 Score=26.78 Aligned_cols=47 Identities=19% Similarity=0.420 Sum_probs=30.2
Q ss_pred CccccccccccccC-CCeeEEe-CCCCcccHHhHHHHHhcC--CCCCccCc
Q 041711 154 GQERCVICLEEFSE-GDEVISL-QCSHVHHRHCILKWLVTG--NNCPTCRF 200 (210)
Q Consensus 154 ~~~~C~ICle~~~~-~~~~~~L-pC~H~Fh~~CI~~Wl~~~--~~CPlCR~ 200 (210)
....|.||.+.-+. ++.+..- .|.-.||..|+..-..-. =.||.|+.
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 55789999876422 2233333 899999999997632111 25888864
No 107
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=67.90 E-value=2.9 Score=30.67 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=25.4
Q ss_pred ccccccccccccCCCeeEEe-CCCCcccHHhHHHH
Q 041711 155 QERCVICLEEFSEGDEVISL-QCSHVHHRHCILKW 188 (210)
Q Consensus 155 ~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~W 188 (210)
...|.+|...|.....-... .||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 45799999999864433334 79999999996543
No 108
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=67.57 E-value=3.2 Score=28.03 Aligned_cols=49 Identities=24% Similarity=0.470 Sum_probs=32.1
Q ss_pred CccccccccccccCCCeeEEe-CCCCcccHHhHHHHHhc------CCCCCccCcCC
Q 041711 154 GQERCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLVT------GNNCPTCRFTL 202 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~------~~~CPlCR~~i 202 (210)
+...|.+|...|.....-..- .||.+||..|....+.. .+.|-.|-..+
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 73 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLL 73 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHT
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHH
Confidence 345799999999865433334 79999999997653211 13466665544
No 109
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=67.07 E-value=3.4 Score=27.19 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=24.1
Q ss_pred cccccccccccCCCeeEEe-CCCCcccHHhHHH
Q 041711 156 ERCVICLEEFSEGDEVISL-QCSHVHHRHCILK 187 (210)
Q Consensus 156 ~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~ 187 (210)
..|.+|...|..-..-..- .||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 5799999999764433333 7999999999643
No 110
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=66.96 E-value=7.7 Score=26.47 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=27.2
Q ss_pred ccccccccccccCCCeeEEeC--CCCcccHHhHHHHHhc
Q 041711 155 QERCVICLEEFSEGDEVISLQ--CSHVHHRHCILKWLVT 191 (210)
Q Consensus 155 ~~~C~ICle~~~~~~~~~~Lp--C~H~Fh~~CI~~Wl~~ 191 (210)
.-.|.+|.+.+++.. .+..| =.|.||..|-...++.
T Consensus 15 ~l~CtlC~erLEdtH-FVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDTH-FVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSSTT-SEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhccCc-eeeCCCccCCeeeccccHHHHHh
Confidence 457999999998644 23332 2699999999998875
No 111
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=66.47 E-value=3.4 Score=28.44 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=26.2
Q ss_pred ccccccccccccCCCeeEEe-CCCCcccHHhHHHHH
Q 041711 155 QERCVICLEEFSEGDEVISL-QCSHVHHRHCILKWL 189 (210)
Q Consensus 155 ~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl 189 (210)
...|.+|...|..-..-... .||++||..|...+.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 45799999999764433333 799999999976543
No 112
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=66.26 E-value=2.9 Score=29.74 Aligned_cols=47 Identities=26% Similarity=0.431 Sum_probs=32.6
Q ss_pred cccccccccccCCCeeEEe--CCCCcccHHhHHHH------Hh----cCCCCCccCcCC
Q 041711 156 ERCVICLEEFSEGDEVISL--QCSHVHHRHCILKW------LV----TGNNCPTCRFTL 202 (210)
Q Consensus 156 ~~C~ICle~~~~~~~~~~L--pC~H~Fh~~CI~~W------l~----~~~~CPlCR~~i 202 (210)
..|.||...+..+...+.- .|..-||..|+.-= +. .+-.||.|+..-
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 4799999998665444444 68999999998421 10 234799997654
No 113
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=65.97 E-value=7.7 Score=26.93 Aligned_cols=50 Identities=20% Similarity=0.433 Sum_probs=35.0
Q ss_pred CccccccccccccCCC--eeEEe--CCCCcccHHhHHHHHhc-CCCCCccCcCCC
Q 041711 154 GQERCVICLEEFSEGD--EVISL--QCSHVHHRHCILKWLVT-GNNCPTCRFTLP 203 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~--~~~~L--pC~H~Fh~~CI~~Wl~~-~~~CPlCR~~i~ 203 (210)
....|.||-+++.... .+-+. -|+---|..|..-=.+. +..||-|+++..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3468999999975322 12222 57878899998655544 579999998874
No 114
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=65.87 E-value=1.7 Score=31.30 Aligned_cols=33 Identities=24% Similarity=0.506 Sum_probs=22.1
Q ss_pred cccccccccccC------CCeeEEe-CCCCcccHHhHHHH
Q 041711 156 ERCVICLEEFSE------GDEVISL-QCSHVHHRHCILKW 188 (210)
Q Consensus 156 ~~C~ICle~~~~------~~~~~~L-pC~H~Fh~~CI~~W 188 (210)
..|.||+..-.. ++.+..- .|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 469999876421 1223222 79999999999765
No 115
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=65.67 E-value=4.5 Score=27.38 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=26.3
Q ss_pred CccccccccccccCCCeeEEe-CCCCcccHHhHHHH
Q 041711 154 GQERCVICLEEFSEGDEVISL-QCSHVHHRHCILKW 188 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~W 188 (210)
+...|.+|...|..-..-..- .||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 446799999999865433333 79999999997654
No 116
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=65.03 E-value=0.59 Score=34.40 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=30.2
Q ss_pred ccccccccccccCCCeeEEe-CCCCcccHHhHHHHHhcCCCCCccCc
Q 041711 155 QERCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLVTGNNCPTCRF 200 (210)
Q Consensus 155 ~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~~~~CPlCR~ 200 (210)
...|..|...|..-..-... .||.+||..|........+.|-.|-.
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 35799999999764333333 79999999997665555566776643
No 117
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=64.64 E-value=2.8 Score=31.26 Aligned_cols=33 Identities=24% Similarity=0.617 Sum_probs=23.9
Q ss_pred Ccccccccccccc-C-CCeeEEeCCCCcccHHhHH
Q 041711 154 GQERCVICLEEFS-E-GDEVISLQCSHVHHRHCIL 186 (210)
Q Consensus 154 ~~~~C~ICle~~~-~-~~~~~~LpC~H~Fh~~CI~ 186 (210)
+...|++|...|. . +......-|+|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 5678999999994 2 2233334899999998854
No 118
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=64.45 E-value=1.3 Score=36.19 Aligned_cols=43 Identities=26% Similarity=0.519 Sum_probs=25.7
Q ss_pred ccccccccccCCCeeEEe-CCCCcccHHhHHHHHhcC-----CCCCccCc
Q 041711 157 RCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLVTG-----NNCPTCRF 200 (210)
Q Consensus 157 ~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~~-----~~CPlCR~ 200 (210)
.|.+|...=.. ..+... .|...||..|+.+=|... =.||.|+.
T Consensus 176 ~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 57888754222 223333 799999999999766542 15999965
No 119
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=64.30 E-value=1.3 Score=31.66 Aligned_cols=46 Identities=17% Similarity=0.483 Sum_probs=29.1
Q ss_pred ccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCC----CCCccCcCC
Q 041711 157 RCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGN----NCPTCRFTL 202 (210)
Q Consensus 157 ~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~----~CPlCR~~i 202 (210)
.|.+|...-.....+..-.|...||..|+.+-+...+ .||.|+.-.
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 5777766532222222227999999999987665432 599886543
No 120
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=64.25 E-value=5.6 Score=34.69 Aligned_cols=46 Identities=20% Similarity=0.465 Sum_probs=30.8
Q ss_pred cccccccccccCCCeeEEeCCCCc--ccHHhHHHHHhcCC--CCCccCcCCC
Q 041711 156 ERCVICLEEFSEGDEVISLQCSHV--HHRHCILKWLVTGN--NCPTCRFTLP 203 (210)
Q Consensus 156 ~~C~ICle~~~~~~~~~~LpC~H~--Fh~~CI~~Wl~~~~--~CPlCR~~i~ 203 (210)
-.|+|-+..|.. .++...|.|. |-..=+.....+.+ .||+|...+.
T Consensus 250 L~CPlS~~ri~~--PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSS--EEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCccccccc--cCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 468887777643 5667799998 55544444433333 6999988764
No 121
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=64.25 E-value=2.8 Score=26.86 Aligned_cols=43 Identities=21% Similarity=0.453 Sum_probs=28.2
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCcc
Q 041711 156 ERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTC 198 (210)
Q Consensus 156 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlC 198 (210)
..|.-|+..|.....-+.-.|++.||.+|=.---..=..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999998542212222799999999954322233579988
No 122
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=63.85 E-value=4.2 Score=26.80 Aligned_cols=44 Identities=30% Similarity=0.594 Sum_probs=28.1
Q ss_pred CccccccccccccCCCeeEEe-C--CC-CcccHHhHHHHHhcC----CCCCccCcCC
Q 041711 154 GQERCVICLEEFSEGDEVISL-Q--CS-HVHHRHCILKWLVTG----NNCPTCRFTL 202 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-p--C~-H~Fh~~CI~~Wl~~~----~~CPlCR~~i 202 (210)
+..-| ||..... ++ .+.- . |. .-||..|+. |... -.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34567 8987542 43 2222 5 65 689999998 4443 2699997654
No 123
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=63.19 E-value=6.2 Score=28.20 Aligned_cols=43 Identities=21% Similarity=0.546 Sum_probs=28.5
Q ss_pred CccccccccccccCCCeeEEeC---CCCcccHHhHHHHHhcCC----CCCccCcCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQ---CSHVHHRHCILKWLVTGN----NCPTCRFTL 202 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~Lp---C~H~Fh~~CI~~Wl~~~~----~CPlCR~~i 202 (210)
.+..|.+|.+. |+ +..-- |...||..|+. |...+ .||-|+-.+
T Consensus 14 ~~~~C~~C~~~---G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 14 HEDYCFQCGDG---GE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp SCSSCTTTCCC---SE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCcCCCC---Cc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 56679999832 33 33233 88999999998 55432 488776544
No 124
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=62.65 E-value=6.3 Score=34.25 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=31.6
Q ss_pred cccccccccccCCCeeEEeCCCCc--ccHHhHHHHHhcCC--CCCccCcCCC
Q 041711 156 ERCVICLEEFSEGDEVISLQCSHV--HHRHCILKWLVTGN--NCPTCRFTLP 203 (210)
Q Consensus 156 ~~C~ICle~~~~~~~~~~LpC~H~--Fh~~CI~~Wl~~~~--~CPlCR~~i~ 203 (210)
-.|+|-+..|.. .++...|.|. |-..=......+++ .||+|...+.
T Consensus 216 L~CPlS~~ri~~--P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSS--EEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceecc--CCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 359988777643 5667799998 66555444444443 6999998774
No 125
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.58 E-value=2.7 Score=29.28 Aligned_cols=44 Identities=30% Similarity=0.594 Sum_probs=27.7
Q ss_pred CccccccccccccCCCeeEEe-C--CC-CcccHHhHHHHHhcC----CCCCccCcCC
Q 041711 154 GQERCVICLEEFSEGDEVISL-Q--CS-HVHHRHCILKWLVTG----NNCPTCRFTL 202 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-p--C~-H~Fh~~CI~~Wl~~~----~~CPlCR~~i 202 (210)
+..-| ||..... ++ .+.- . |. .-||..|+. |... -.||.|+..-
T Consensus 35 e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 34557 9987643 33 2122 4 55 579999997 4442 3699997654
No 126
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=61.27 E-value=3.5 Score=32.94 Aligned_cols=35 Identities=23% Similarity=0.404 Sum_probs=26.2
Q ss_pred CccccccccccccCCCeeEEe-CCCCcccHHhHHHH
Q 041711 154 GQERCVICLEEFSEGDEVISL-QCSHVHHRHCILKW 188 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~W 188 (210)
+...|.+|...|..-..-... .||++||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 457899999999764433344 79999999996543
No 127
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=60.05 E-value=3.9 Score=32.97 Aligned_cols=50 Identities=20% Similarity=0.388 Sum_probs=33.9
Q ss_pred CccccccccccccCCCeeEEe-CCCCcccHHhHHHHHhc--------CCCCCccCcCCC
Q 041711 154 GQERCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLVT--------GNNCPTCRFTLP 203 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~--------~~~CPlCR~~i~ 203 (210)
+...|.+|...|..-..-... .||++||..|-...... .+.|-.|-..+.
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHC
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhh
Confidence 456899999999865443344 79999999997654321 235777755443
No 128
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.93 E-value=5.1 Score=27.08 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=24.9
Q ss_pred CccccccccccccCCCeeEEe-CCCCcccHHhHHH
Q 041711 154 GQERCVICLEEFSEGDEVISL-QCSHVHHRHCILK 187 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~ 187 (210)
+...|.+|...|..-..--.- .||.+||..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 345799999999764433333 7999999999654
No 129
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=58.43 E-value=0.47 Score=34.35 Aligned_cols=47 Identities=17% Similarity=0.400 Sum_probs=30.4
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCC----CCCccCcCC
Q 041711 156 ERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGN----NCPTCRFTL 202 (210)
Q Consensus 156 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~----~CPlCR~~i 202 (210)
..|.||...-..++.+.--.|...||..|+.+=|...+ .||.|+..+
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 36888876533333222228999999999997555432 588886544
No 130
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=58.11 E-value=2.1 Score=23.22 Aligned_cols=13 Identities=31% Similarity=0.915 Sum_probs=9.6
Q ss_pred CCCCCccCcCCCC
Q 041711 192 GNNCPTCRFTLPC 204 (210)
Q Consensus 192 ~~~CPlCR~~i~~ 204 (210)
+.+||+|+...|.
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 3469999887764
No 131
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=56.15 E-value=4.7 Score=30.74 Aligned_cols=32 Identities=22% Similarity=0.569 Sum_probs=24.1
Q ss_pred CccccccccccccC--CCeeEEeCCCCcccHHhH
Q 041711 154 GQERCVICLEEFSE--GDEVISLQCSHVHHRHCI 185 (210)
Q Consensus 154 ~~~~C~ICle~~~~--~~~~~~LpC~H~Fh~~CI 185 (210)
+...|++|...|.- +.......|+|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 46789999998743 333444489999999996
No 132
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=55.95 E-value=2.4 Score=36.99 Aligned_cols=49 Identities=20% Similarity=0.286 Sum_probs=0.0
Q ss_pred CccccccccccccCCCeeEEe-CCCCcccHHhHHHHHhc-------CCCCCccCcCC
Q 041711 154 GQERCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLVT-------GNNCPTCRFTL 202 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~~-------~~~CPlCR~~i 202 (210)
....|.+|...|..-..-... .||++||..|-...+.. .+.|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 346799999999754332223 79999999999766421 24688886654
No 133
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=53.60 E-value=2.3 Score=26.96 Aligned_cols=42 Identities=29% Similarity=0.608 Sum_probs=26.7
Q ss_pred CccccccccccccCCCeeEEe-C--CC-CcccHHhHHHHHhcC----CCCCccCc
Q 041711 154 GQERCVICLEEFSEGDEVISL-Q--CS-HVHHRHCILKWLVTG----NNCPTCRF 200 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-p--C~-H~Fh~~CI~~Wl~~~----~~CPlCR~ 200 (210)
+..-| ||.... .|+ .+.- . |. .-||..|+. |... -.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YGE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CCC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34456 898764 233 2222 5 66 699999998 4443 26999864
No 134
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=53.42 E-value=5.4 Score=28.26 Aligned_cols=12 Identities=25% Similarity=0.822 Sum_probs=10.8
Q ss_pred ccHHhHHHHHhc
Q 041711 180 HHRHCILKWLVT 191 (210)
Q Consensus 180 Fh~~CI~~Wl~~ 191 (210)
||+.|+.+|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 135
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=53.33 E-value=5.4 Score=28.20 Aligned_cols=12 Identities=42% Similarity=1.124 Sum_probs=10.8
Q ss_pred ccHHhHHHHHhc
Q 041711 180 HHRHCILKWLVT 191 (210)
Q Consensus 180 Fh~~CI~~Wl~~ 191 (210)
||+.|+.+|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 136
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=53.07 E-value=7.2 Score=25.21 Aligned_cols=44 Identities=11% Similarity=0.085 Sum_probs=24.9
Q ss_pred CccccccccccccCCCeeEEeCCCCcccH-HhHHHHHhcCCCCCccCcC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHR-HCILKWLVTGNNCPTCRFT 201 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~-~CI~~Wl~~~~~CPlCR~~ 201 (210)
+-..|..|...+..+. . ...=+..||. .|-.+ .....|-.|...
T Consensus 26 ~CF~C~~C~~~L~~~~-~-~~~~g~~yC~~~cy~~--~f~~~C~~C~~~ 70 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG-H-AEHEGKPYCNHPCYSA--MFGPKGFGRGGA 70 (76)
T ss_dssp TTCBCTTTCCBCCTTT-E-EEETTEEEETTTHHHH--HSSCCCSSCCCS
T ss_pred CCCCccccCccCCCCc-e-ECcCCeEeeCHHHHHH--HhCccCCCcCCc
Confidence 4567888877776543 1 1233556666 46544 234567777543
No 137
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.97 E-value=11 Score=24.33 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=28.1
Q ss_pred ccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCCC
Q 041711 155 QERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLPC 204 (210)
Q Consensus 155 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~ 204 (210)
...|+.|-+.+..++.+. .-+..||..| ..|-.|+.+|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCC--------CCCCCCCCccCC
Confidence 357999999888666443 3467888776 357888877753
No 138
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=51.21 E-value=2.6 Score=26.82 Aligned_cols=41 Identities=32% Similarity=0.655 Sum_probs=25.6
Q ss_pred ccccccccccccCCCeeEEe-C--CC-CcccHHhHHHHHhcC----CCCCccCc
Q 041711 155 QERCVICLEEFSEGDEVISL-Q--CS-HVHHRHCILKWLVTG----NNCPTCRF 200 (210)
Q Consensus 155 ~~~C~ICle~~~~~~~~~~L-p--C~-H~Fh~~CI~~Wl~~~----~~CPlCR~ 200 (210)
..-| ||.... .++ .+.- . |. .-||..|+. |... -.||.|+.
T Consensus 10 ~~~C-~C~~~~-~g~-mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS-YGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcC-CCC-EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4456 898763 232 2222 5 55 679999998 5543 26998864
No 139
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=46.96 E-value=18 Score=23.63 Aligned_cols=45 Identities=22% Similarity=0.459 Sum_probs=29.2
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHhHHHH------H---hcCCCCCccCcC
Q 041711 156 ERCVICLEEFSEGDEVISLQCSHVHHRHCILKW------L---VTGNNCPTCRFT 201 (210)
Q Consensus 156 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~W------l---~~~~~CPlCR~~ 201 (210)
..| ||...+..+..+..-.|..-||..|+.-- + ..+-.||.|+..
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 456 89887653332222289999999999421 1 235689999754
No 140
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=46.45 E-value=12 Score=24.47 Aligned_cols=31 Identities=23% Similarity=0.519 Sum_probs=23.9
Q ss_pred CccccccccccccCCCeeEEeCC-CCcccHHhHHHH
Q 041711 154 GQERCVICLEEFSEGDEVISLQC-SHVHHRHCILKW 188 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC-~H~Fh~~CI~~W 188 (210)
+..-|.||.++ ..++.+-| +-.||..|..+-
T Consensus 7 e~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred CCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 44569999987 34777789 899999996554
No 141
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.73 E-value=17 Score=23.86 Aligned_cols=40 Identities=30% Similarity=0.707 Sum_probs=28.0
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~ 203 (210)
....|+-|-+.+..++.+.. -+..||..| ..|-.|+.+|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCcC
Confidence 44579999998876665443 367788776 35778877764
No 142
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=45.71 E-value=3.8 Score=29.30 Aligned_cols=24 Identities=21% Similarity=0.552 Sum_probs=15.5
Q ss_pred eCCCCcccHHhHHHHHhcCCCCCccCcCC
Q 041711 174 LQCSHVHHRHCILKWLVTGNNCPTCRFTL 202 (210)
Q Consensus 174 LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i 202 (210)
..||+.|. .-+.....||.|+..-
T Consensus 71 ~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 71 RKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp TTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred hhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 46999981 1122346899998754
No 143
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=44.22 E-value=4.2 Score=26.03 Aligned_cols=41 Identities=29% Similarity=0.654 Sum_probs=25.9
Q ss_pred ccccccccccccCCCeeEEe-C--CC-CcccHHhHHHHHhcC----CCCCccCc
Q 041711 155 QERCVICLEEFSEGDEVISL-Q--CS-HVHHRHCILKWLVTG----NNCPTCRF 200 (210)
Q Consensus 155 ~~~C~ICle~~~~~~~~~~L-p--C~-H~Fh~~CI~~Wl~~~----~~CPlCR~ 200 (210)
..-| ||.... .++ .+.- . |. .-||..|+. |... -.||.|+.
T Consensus 11 ~~yC-~C~~~~-~g~-MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YGE-MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CCC-eeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 4456 898763 243 2222 5 55 899999997 3432 36999965
No 144
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=42.60 E-value=12 Score=24.30 Aligned_cols=47 Identities=21% Similarity=0.358 Sum_probs=31.0
Q ss_pred CccccccccccccCCCeeEEe-CCCCcccHHhHHHHH----hcCCCCCccCcC
Q 041711 154 GQERCVICLEEFSEGDEVISL-QCSHVHHRHCILKWL----VTGNNCPTCRFT 201 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl----~~~~~CPlCR~~ 201 (210)
....| ||......++..+.- .|..-||..|+.--- ..+-.||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 34568 798876555433334 899999999986432 123469999753
No 145
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.53 E-value=15 Score=24.12 Aligned_cols=40 Identities=30% Similarity=0.579 Sum_probs=26.9
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~ 203 (210)
....|+-|-..+..++.+. .-+..||..| ..|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L~ 53 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATLW 53 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBCC
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCcC
Confidence 3457999999887666443 3467788777 34666766664
No 146
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=40.43 E-value=2.4 Score=27.06 Aligned_cols=37 Identities=16% Similarity=0.443 Sum_probs=26.0
Q ss_pred cccccccccccCCCeeEEe--C---CCCcccHHhHHHHHhcC
Q 041711 156 ERCVICLEEFSEGDEVISL--Q---CSHVHHRHCILKWLVTG 192 (210)
Q Consensus 156 ~~C~ICle~~~~~~~~~~L--p---C~H~Fh~~CI~~Wl~~~ 192 (210)
..|+-|.-.++-.+....+ . |++.||..|..+|-...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 4688888887755433233 2 88999999998887554
No 147
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=38.66 E-value=4.2 Score=24.85 Aligned_cols=40 Identities=25% Similarity=0.517 Sum_probs=25.0
Q ss_pred cccccccCCCeeEEe-CCCCcccHHhHHHHHh---cCCCCCccCc
Q 041711 160 ICLEEFSEGDEVISL-QCSHVHHRHCILKWLV---TGNNCPTCRF 200 (210)
Q Consensus 160 ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~---~~~~CPlCR~ 200 (210)
||..... +...+.- .|..-||..|+.---. .+-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766544 3223333 7999999999864322 2346998865
No 148
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.65 E-value=35 Score=21.97 Aligned_cols=40 Identities=23% Similarity=0.619 Sum_probs=26.4
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCCC
Q 041711 156 ERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLPC 204 (210)
Q Consensus 156 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~ 204 (210)
..|+.|-+.+..++..+ ..=+..||..| ..|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNV-EYKGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCEE-ECSSCEEETTT--------CCCSSSCCCCTT
T ss_pred CcCccCCcccccCceEE-EECcccccccc--------CchhhCCCccCC
Confidence 46888888887655432 23467788766 357777777743
No 149
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=37.29 E-value=7.3 Score=20.58 Aligned_cols=11 Identities=36% Similarity=1.226 Sum_probs=7.3
Q ss_pred CCCccCcCCCC
Q 041711 194 NCPTCRFTLPC 204 (210)
Q Consensus 194 ~CPlCR~~i~~ 204 (210)
.||+|.+-+|.
T Consensus 8 qcpvcqq~mpa 18 (29)
T 3vhs_A 8 QCPVCQQMMPA 18 (29)
T ss_dssp ECTTTCCEEEG
T ss_pred eChHHHHhCcH
Confidence 48888776553
No 150
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=36.74 E-value=9.8 Score=21.46 Aligned_cols=10 Identities=20% Similarity=0.640 Sum_probs=5.3
Q ss_pred cccccccccc
Q 041711 156 ERCVICLEEF 165 (210)
Q Consensus 156 ~~C~ICle~~ 165 (210)
..|+||+.++
T Consensus 6 FiCP~C~~~l 15 (34)
T 3mjh_B 6 FICPQCMKSL 15 (34)
T ss_dssp EECTTTCCEE
T ss_pred cCCcHHHHHc
Confidence 4566665543
No 151
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=36.26 E-value=8.9 Score=20.79 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=19.0
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHh
Q 041711 156 ERCVICLEEFSEGDEVISLQCSHVHHRHC 184 (210)
Q Consensus 156 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~C 184 (210)
+.|+.|-...-..+.+. .=+..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE--ECCeEecccC
Confidence 46999988876655332 3478889887
No 152
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=34.81 E-value=20 Score=27.42 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=25.1
Q ss_pred CccccccccccccCCCeeEEe---CCCCcccHHhHHHHHhc
Q 041711 154 GQERCVICLEEFSEGDEVISL---QCSHVHHRHCILKWLVT 191 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L---pC~H~Fh~~CI~~Wl~~ 191 (210)
-+..|.||-+. ..+... .|...||..||..++..
T Consensus 78 ~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 78 YQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 34679999863 344444 38899999999998765
No 153
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.78 E-value=41 Score=20.94 Aligned_cols=39 Identities=18% Similarity=0.417 Sum_probs=22.9
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCC
Q 041711 156 ERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 156 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~ 203 (210)
..|+.|-+.+..++..+ ..-+..||..| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKM-EYKGSSWHETC--------FICHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCEE-EETTEEEETTT--------TCCSSSCCCCC
T ss_pred CCCccCCCcccCCceEE-EECcCeecccC--------CcccccCCccC
Confidence 45778877776543222 22456677665 24667766664
No 154
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.23 E-value=37 Score=21.20 Aligned_cols=39 Identities=26% Similarity=0.480 Sum_probs=23.4
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCC
Q 041711 156 ERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 156 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~ 203 (210)
..|+-|-+.+..++.+ +..-+..||..| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHC--------FLCSGCEQPLG 44 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTT--------CBCTTTCCBTT
T ss_pred CCCccCCCccccCccE-EEECccccCccc--------CeECCCCCcCC
Confidence 4678887777654322 223466777666 24667766664
No 155
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=32.08 E-value=11 Score=24.65 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=13.0
Q ss_pred HHHHhcCCCCCccCcCCC
Q 041711 186 LKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 186 ~~Wl~~~~~CPlCR~~i~ 203 (210)
++||..--.||+|+.++.
T Consensus 2 d~~LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 2 DTKLLDILACPICKGPLK 19 (69)
T ss_dssp -CCGGGTCCCTTTCCCCE
T ss_pred ChHHHhheeCCCCCCcCe
Confidence 445666678999998874
No 156
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=31.85 E-value=26 Score=21.77 Aligned_cols=40 Identities=20% Similarity=0.649 Sum_probs=27.8
Q ss_pred ccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCC
Q 041711 155 QERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 155 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~ 203 (210)
...|+-|-..+..++.++. .=+..||..|. .|-.|..++.
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~ 50 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFP 50 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCC
Confidence 4579999999887664432 34667888774 5777877764
No 157
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.44 E-value=44 Score=20.85 Aligned_cols=11 Identities=27% Similarity=0.437 Sum_probs=5.7
Q ss_pred ccccccccccC
Q 041711 157 RCVICLEEFSE 167 (210)
Q Consensus 157 ~C~ICle~~~~ 167 (210)
.|+.|-+.+..
T Consensus 7 ~C~~C~~~I~~ 17 (72)
T 1x61_A 7 GCGGCGEDVVG 17 (72)
T ss_dssp CCSSSCSCCCS
T ss_pred CCccCCCccCC
Confidence 45555555543
No 158
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=31.32 E-value=44 Score=21.93 Aligned_cols=48 Identities=21% Similarity=0.440 Sum_probs=30.7
Q ss_pred CccccccccccccCCCeeEEe--CCCCcccHHhHHHHHh---------cCCCCCccCcCC
Q 041711 154 GQERCVICLEEFSEGDEVISL--QCSHVHHRHCILKWLV---------TGNNCPTCRFTL 202 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L--pC~H~Fh~~CI~~Wl~---------~~~~CPlCR~~i 202 (210)
....| ||-.....+..+..= .|..-||..|+.---. .+-.||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 34567 788875444433333 5999999999953211 234799997643
No 159
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.27 E-value=25 Score=21.96 Aligned_cols=37 Identities=22% Similarity=0.462 Sum_probs=20.0
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCC
Q 041711 156 ERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 156 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~ 203 (210)
..|+-|-+.+.. +.+ ..-+..||..|. .|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~-~~~--~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RVI--KAMNNSWHPECF--------RCDLCQEVLA 42 (70)
T ss_dssp SBCSSSCCBCCS-CCE--EETTEEECTTTS--------BCSSSCCBCS
T ss_pred CcCccCCCEecc-eEE--EECcccccccCC--------EeCCCCCcCC
Confidence 457777766652 322 233556666552 4666666554
No 160
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=31.26 E-value=26 Score=30.64 Aligned_cols=43 Identities=23% Similarity=0.413 Sum_probs=29.6
Q ss_pred ccccccccccccCCCeeEEe--CCCCcccHHhHHHHHhcC----------CCCCccCc
Q 041711 155 QERCVICLEEFSEGDEVISL--QCSHVHHRHCILKWLVTG----------NNCPTCRF 200 (210)
Q Consensus 155 ~~~C~ICle~~~~~~~~~~L--pC~H~Fh~~CI~~Wl~~~----------~~CPlCR~ 200 (210)
+..|.||-+. ++-+..= .|...||..||..++... =.|=+|.-
T Consensus 93 ~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 93 QSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp BCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred cccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 4579999864 3322222 588999999999998431 25888853
No 161
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=30.88 E-value=3.8 Score=27.50 Aligned_cols=19 Identities=21% Similarity=0.595 Sum_probs=15.0
Q ss_pred CCCCcccHHhHHHHHhcCCCC
Q 041711 175 QCSHVHHRHCILKWLVTGNNC 195 (210)
Q Consensus 175 pC~H~Fh~~CI~~Wl~~~~~C 195 (210)
.|++.||..|-..|=. .+|
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCSCCEETTTTEECCS--SCS
T ss_pred CCCCeeccccCccccC--Ccc
Confidence 4999999999988844 445
No 162
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.67 E-value=44 Score=21.24 Aligned_cols=39 Identities=28% Similarity=0.605 Sum_probs=23.3
Q ss_pred cccccccccccC--CCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCC
Q 041711 156 ERCVICLEEFSE--GDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 156 ~~C~ICle~~~~--~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~ 203 (210)
..|+.|-+.+.. .... +..-+..||..|. .|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKF-ICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCE-EEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCcee-EEECCcccCcccC--------ChhhCCCcCC
Confidence 468888887764 2222 2235667787763 4666666654
No 163
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.51 E-value=48 Score=20.92 Aligned_cols=41 Identities=20% Similarity=0.573 Sum_probs=26.1
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~ 203 (210)
....|+-|-+.+..++.+. ..-+..||..| ..|-.|+.++.
T Consensus 10 ~~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~ 50 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIV-NSNGELYHEQC--------FVCAQCFQQFP 50 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCE-EETTEEECTTT--------CCCTTTCCCCG
T ss_pred CCCCchhcCCccCCCceEE-EeCccEecccc--------CeECCCCCCCC
Confidence 3457999988887544332 13466788766 35777777664
No 164
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.12 E-value=55 Score=21.59 Aligned_cols=27 Identities=30% Similarity=0.584 Sum_probs=13.5
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHh
Q 041711 156 ERCVICLEEFSEGDEVISLQCSHVHHRHC 184 (210)
Q Consensus 156 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~C 184 (210)
..|+-|-+.+...+.+ ..-+..||..|
T Consensus 16 ~~C~~C~~~I~~~~~v--~a~~~~~H~~C 42 (91)
T 2d8y_A 16 ETCVECQKTVYPMERL--LANQQVFHISC 42 (91)
T ss_dssp CBCTTTCCBCCTTSEE--ECSSSEEETTT
T ss_pred CcCccCCCccCCceeE--EECCCEECCCC
Confidence 3566666665544422 23345555554
No 165
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.11 E-value=44 Score=20.87 Aligned_cols=40 Identities=25% Similarity=0.552 Sum_probs=24.8
Q ss_pred ccccccccccccC--CCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCC
Q 041711 155 QERCVICLEEFSE--GDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 155 ~~~C~ICle~~~~--~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~ 203 (210)
...|+-|-+.+.. .+.. +..-+..||..|. .|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKY-ISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSC-EECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcce-EEECCcccCcccC--------EeccCCCcCC
Confidence 3468888888764 2222 2235677887763 5777777664
No 166
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.02 E-value=43 Score=22.10 Aligned_cols=39 Identities=21% Similarity=0.427 Sum_probs=25.8
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~ 203 (210)
....|+-|-+.+. ++.+ ..-+..||..| ..|-.|+.+|.
T Consensus 24 ~~~~C~~C~~~I~-~~~v--~a~~~~~H~~C--------F~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFL--VALGKSWHPEE--------FNCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCC-SCEE--EETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCccCCCEec-ceEE--EECCccccccC--------CccCCCCCCCC
Confidence 3457999988884 3432 24577888776 35777877774
No 167
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=27.96 E-value=48 Score=20.29 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=25.6
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCCC
Q 041711 156 ERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLPC 204 (210)
Q Consensus 156 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~ 204 (210)
..|+-|-+.+. ++. +..-+..||..| ..|-.|+.++..
T Consensus 6 ~~C~~C~~~I~-~~~--~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GRV--VNAMGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SCE--ECCTTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCcccCCEec-ceE--EEECccccccCc--------CEECCCCCCCCC
Confidence 46888888887 442 234567888776 357788777743
No 168
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=27.27 E-value=28 Score=22.44 Aligned_cols=45 Identities=27% Similarity=0.566 Sum_probs=29.1
Q ss_pred CccccccccccccCCCeeEEe-CCCCcccHHhHHHHHh---cCCCCCccCc
Q 041711 154 GQERCVICLEEFSEGDEVISL-QCSHVHHRHCILKWLV---TGNNCPTCRF 200 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~---~~~~CPlCR~ 200 (210)
+...| ||..... ++..+.- .|..-||..|+.---. ..-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 44568 9987765 3323333 8999999999964221 1236888864
No 169
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=26.99 E-value=11 Score=24.66 Aligned_cols=18 Identities=22% Similarity=0.159 Sum_probs=13.1
Q ss_pred HHHHhcCCCCCccCcCCC
Q 041711 186 LKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 186 ~~Wl~~~~~CPlCR~~i~ 203 (210)
++||..--.||+|+.++.
T Consensus 4 d~~LLeiL~CP~ck~~L~ 21 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLR 21 (67)
T ss_dssp CGGGTCCCBCTTTCCBCE
T ss_pred CHHHHHHhCCCCCCCcCe
Confidence 345666668999998874
No 170
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.79 E-value=42 Score=21.68 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=23.9
Q ss_pred ccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCC
Q 041711 155 QERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 155 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~ 203 (210)
...|+-|-+.+. ++.+ ..-+..||..| .+|-.|+.+|.
T Consensus 15 ~~~C~~C~~~I~-~~~v--~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIID-EQPL--IFKNDPYHPDH--------FNCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCC-SCCC--CCSSSCCCTTT--------SBCSSSCCBCC
T ss_pred CCCCccCCCEec-ceEE--EECcceeCCCC--------CEeCCCCCccC
Confidence 456888888776 3322 24466777666 35777777664
No 171
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.60 E-value=55 Score=20.98 Aligned_cols=26 Identities=27% Similarity=0.565 Sum_probs=16.3
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHh
Q 041711 156 ERCVICLEEFSEGDEVISLQCSHVHHRHC 184 (210)
Q Consensus 156 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~C 184 (210)
..|+-|-..+. ++.+. .-+..||..|
T Consensus 16 ~~C~~C~~~I~-~~~v~--a~~~~wH~~C 41 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--ALGKTYHPDC 41 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--ETTEEECTTT
T ss_pred CcCccccCEec-cceEE--ECCceeCccC
Confidence 46888888776 33222 3466777666
No 172
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.12 E-value=65 Score=22.62 Aligned_cols=51 Identities=6% Similarity=0.046 Sum_probs=33.6
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLPC 204 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~ 204 (210)
+...|..|-..+..........=+..||..|-.+-+..+..|-.|..+|..
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 445788888877521111123456778888888766655589999888853
No 173
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=24.08 E-value=50 Score=21.40 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=28.6
Q ss_pred cccccccccCCCeeEEe-CCCCcccHHhHHHHHh-----cCCCCCccCcC
Q 041711 158 CVICLEEFSEGDEVISL-QCSHVHHRHCILKWLV-----TGNNCPTCRFT 201 (210)
Q Consensus 158 C~ICle~~~~~~~~~~L-pC~H~Fh~~CI~~Wl~-----~~~~CPlCR~~ 201 (210)
--||...+..+...+.- .|.--||..|+.---. ..-.||.|+..
T Consensus 12 yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 12 YCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred EEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 33888776543333333 8999999999953221 13469999754
No 174
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.02 E-value=64 Score=19.91 Aligned_cols=37 Identities=24% Similarity=0.554 Sum_probs=21.5
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCC
Q 041711 156 ERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 156 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~ 203 (210)
..|+-|-+.+.. +. +..-+..||..| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~-~~--~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITT-GG--VTYREQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCS-SE--EESSSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCcccCCeecc-ce--EEECccccCCCC--------CccCCCCCcCC
Confidence 457777777653 32 224466777665 24666666663
No 175
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.97 E-value=93 Score=20.32 Aligned_cols=40 Identities=18% Similarity=0.328 Sum_probs=27.2
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLPC 204 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~~ 204 (210)
....|+-|-+.+.. +. +..-+..||..| ..|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~~-~~--~~a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AV--VKARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-CC--EESSSCEECTTT--------CCCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-cE--EEECCceECccC--------CEecCCCCCCCC
Confidence 34579999988874 32 234567888877 357788877743
No 176
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=22.62 E-value=42 Score=23.72 Aligned_cols=36 Identities=28% Similarity=0.520 Sum_probs=21.1
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHh
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLV 190 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~ 190 (210)
....|..|-..+..++... ..=+..||..|..+.+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f~-~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYL-LINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEE-ECSSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcEE-eeCCEEEcHHHhHHHhc
Confidence 4556777777765444332 23456677777666554
No 177
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.58 E-value=22 Score=26.76 Aligned_cols=23 Identities=22% Similarity=0.609 Sum_probs=14.0
Q ss_pred eCCCCcccHHhHHHHHhcCCCCCccCcCC
Q 041711 174 LQCSHVHHRHCILKWLVTGNNCPTCRFTL 202 (210)
Q Consensus 174 LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i 202 (210)
..|+|.|-.. .....||.|-.++
T Consensus 136 ~~Cg~~~~~~------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 136 IGCGRKFSTL------PPGGVCPDCGSKV 158 (165)
T ss_dssp SSSCCEESSC------CGGGBCTTTCCBE
T ss_pred CCCCCcccCC------CCCCcCCCCCCcc
Confidence 3577776432 2234799998765
No 178
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=22.50 E-value=46 Score=23.75 Aligned_cols=39 Identities=21% Similarity=0.470 Sum_probs=27.9
Q ss_pred ccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCCC
Q 041711 155 QERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTLP 203 (210)
Q Consensus 155 ~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i~ 203 (210)
...|+-|-..+.....+. .-+..||..| ..|-.|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~--a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY--AMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE--ETTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE--eCCcEEcccc--------cCcCcCCCccc
Confidence 357999999887543232 4577888877 45888888774
No 179
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=22.16 E-value=25 Score=24.69 Aligned_cols=39 Identities=23% Similarity=0.516 Sum_probs=21.8
Q ss_pred cccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCC
Q 041711 156 ERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTL 202 (210)
Q Consensus 156 ~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i 202 (210)
..|++|..+++... ++.+|..|-.. +.....||-|.+++
T Consensus 33 ~~CP~Cq~eL~~~g-------~~~hC~~C~~~-f~~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQDN-------GHARCRSCGEF-IEMKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEET-------TEEEETTTCCE-EEEEEECTTTCSBC
T ss_pred ccCccCCCcceecC-------CEEECccccch-hhccccCcchhhHH
Confidence 46999988765321 12223333221 23445788888876
No 180
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=21.04 E-value=68 Score=22.54 Aligned_cols=27 Identities=19% Similarity=0.349 Sum_probs=11.1
Q ss_pred ccccccccccCCCeeEEeCCCCcccHHh
Q 041711 157 RCVICLEEFSEGDEVISLQCSHVHHRHC 184 (210)
Q Consensus 157 ~C~ICle~~~~~~~~~~LpC~H~Fh~~C 184 (210)
.|+.|-..+...+.++ ..=+..||..|
T Consensus 68 ~C~~C~~~I~~~e~~~-~a~~~~~H~~C 94 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTM-RVKDKVYHLEC 94 (131)
T ss_dssp ECTTTCCEECTTSEEE-EETTEEEEGGG
T ss_pred ChhhcCCccCccceeE-eeCCceECccC
Confidence 4555555444322111 12344555544
No 181
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=20.83 E-value=43 Score=25.56 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=13.1
Q ss_pred eCCCCcccHHhHHHHHhcCCCCCccCcC
Q 041711 174 LQCSHVHHRHCILKWLVTGNNCPTCRFT 201 (210)
Q Consensus 174 LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~ 201 (210)
..|||++-. .....||+|..+
T Consensus 142 ~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 142 PICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp TTTCCEEES-------CCCSBCTTTCCB
T ss_pred CCCCCeeCC-------CCCCCCCCCCCC
Confidence 367777641 223489999754
No 182
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.58 E-value=69 Score=20.47 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=25.4
Q ss_pred CccccccccccccCCCeeEEeCCCCcccHHhHHHHHhcCCCCCccCcCC
Q 041711 154 GQERCVICLEEFSEGDEVISLQCSHVHHRHCILKWLVTGNNCPTCRFTL 202 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~LpC~H~Fh~~CI~~Wl~~~~~CPlCR~~i 202 (210)
....|+-|-+.+.. +. +..-+..||..|. .|-.|+..|
T Consensus 14 ~~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VF--VKLRDRHRHPECY--------VCTDCGTNL 51 (79)
T ss_dssp CCCCCSSSCCCCCS-SC--EECSSCEECTTTT--------SCSSSCCCH
T ss_pred CCCccccCCCCccC-cE--EEECcceeCcCcC--------eeCCCCCCC
Confidence 34579999888874 32 2345778888773 477777665
No 183
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=20.56 E-value=17 Score=25.11 Aligned_cols=42 Identities=19% Similarity=0.422 Sum_probs=25.4
Q ss_pred CccccccccccccCCCeeEEe-CCC---CcccHHhHHHHHhcC----CCCCc-cCc
Q 041711 154 GQERCVICLEEFSEGDEVISL-QCS---HVHHRHCILKWLVTG----NNCPT-CRF 200 (210)
Q Consensus 154 ~~~~C~ICle~~~~~~~~~~L-pC~---H~Fh~~CI~~Wl~~~----~~CPl-CR~ 200 (210)
+..-| ||..... ++ .+.- .|. .-||..|+. |... -.||. |+.
T Consensus 25 ~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 34457 9987532 43 2222 544 689999996 3332 36999 864
No 184
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=20.30 E-value=7 Score=26.45 Aligned_cols=20 Identities=15% Similarity=0.449 Sum_probs=15.0
Q ss_pred EEeC-CCCcccHHhHHHHHhc
Q 041711 172 ISLQ-CSHVHHRHCILKWLVT 191 (210)
Q Consensus 172 ~~Lp-C~H~Fh~~CI~~Wl~~ 191 (210)
+.-+ |++.||..|-.+|=..
T Consensus 44 v~C~~C~~~FC~~C~~~w~~~ 64 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQWEEQ 64 (86)
T ss_dssp EECTTTCCEECSSSCSBCCTT
T ss_pred eEeCCCCCccccccCCchhhc
Confidence 3344 9999999998888333
No 185
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=20.14 E-value=5.7 Score=20.40 Aligned_cols=12 Identities=33% Similarity=0.761 Sum_probs=9.2
Q ss_pred cccHHhHHHHHh
Q 041711 179 VHHRHCILKWLV 190 (210)
Q Consensus 179 ~Fh~~CI~~Wl~ 190 (210)
.||..|-.+||.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 578888888874
Done!