Query 041712
Match_columns 81
No_of_seqs 101 out of 187
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 09:53:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05498 RALF: Rapid ALkaliniz 99.8 6E-21 1.3E-25 118.3 5.1 45 29-74 19-66 (66)
2 PLN03222 rapid alkalinization 99.8 5.2E-20 1.1E-24 125.1 2.7 44 30-74 73-119 (119)
3 PLN03221 rapid alkalinization 99.8 8.8E-20 1.9E-24 126.3 2.7 44 30-74 91-137 (137)
4 PF07172 GRP: Glycine rich pro 95.3 0.016 3.6E-07 37.9 2.7 13 1-14 1-13 (95)
5 PRK12750 cpxP periplasmic repr 79.9 1.9 4.1E-05 30.6 2.7 22 1-22 1-22 (170)
6 PF04202 Mfp-3: Foot protein 3 78.2 2.6 5.6E-05 26.7 2.6 18 7-24 4-21 (71)
7 PF09125 COX2-transmemb: Cytoc 71.3 6.6 0.00014 22.1 2.9 17 5-21 14-31 (38)
8 PF12729 4HB_MCP_1: Four helix 71.1 5 0.00011 25.6 2.7 11 1-11 2-12 (181)
9 PF07127 Nodulin_late: Late no 68.8 20 0.00042 20.7 4.7 21 3-24 1-21 (54)
10 TIGR01165 cbiN cobalt transpor 63.1 13 0.00027 24.6 3.4 24 1-24 1-25 (91)
11 PF02950 Conotoxin: Conotoxin; 59.7 3 6.5E-05 24.9 0.0 14 6-19 2-15 (75)
12 PF09879 DUF2106: Predicted me 57.4 26 0.00056 25.1 4.4 16 55-70 55-70 (153)
13 PF12869 tRNA_anti-like: tRNA_ 55.0 4 8.7E-05 26.8 0.0 21 1-21 1-21 (144)
14 COG4037 Predicted membrane pro 51.8 22 0.00048 25.4 3.3 13 55-67 59-71 (163)
15 PF07835 COX4_pro_2: Bacterial 49.3 8.8 0.00019 21.8 0.8 18 3-20 24-41 (44)
16 PF12911 OppC_N: N-terminal TM 48.8 18 0.0004 20.2 2.1 17 5-21 15-31 (56)
17 PF11772 EpuA: DNA-directed RN 40.4 15 0.00033 21.2 0.9 10 32-41 17-26 (47)
18 PRK00059 prsA peptidylprolyl i 40.3 25 0.00054 26.3 2.3 19 1-19 1-19 (336)
19 PRK10884 SH3 domain-containing 39.6 37 0.00081 24.8 3.1 9 28-36 23-31 (206)
20 PRK02710 plastocyanin; Provisi 39.4 50 0.0011 21.5 3.4 19 3-21 1-19 (119)
21 PF06480 FtsH_ext: FtsH Extrac 37.3 12 0.00025 22.6 0.1 12 27-38 24-35 (110)
22 PRK10081 entericidin B membran 36.7 58 0.0013 19.1 3.0 11 4-14 2-12 (48)
23 COG4808 Uncharacterized protei 36.1 34 0.00074 24.5 2.3 28 1-29 1-28 (152)
24 PF05984 Cytomega_UL20A: Cytom 35.9 40 0.00086 22.4 2.4 19 3-21 1-19 (100)
25 COG4960 CpaA Flp pilus assembl 35.5 40 0.00086 24.5 2.6 22 1-22 27-48 (168)
26 TIGR01742 SA_tandem_lipo Staph 35.5 20 0.00043 27.6 1.1 24 1-24 1-24 (255)
27 PTZ00102 disulphide isomerase; 35.5 40 0.00086 25.9 2.8 19 1-20 1-19 (477)
28 PRK09738 small toxic polypepti 35.0 35 0.00076 20.3 1.9 14 1-14 1-14 (52)
29 PF08358 Flexi_CP_N: Carlaviru 34.4 23 0.0005 21.0 1.0 33 28-64 13-46 (52)
30 COG2182 MalE Maltose-binding p 33.0 77 0.0017 25.7 4.1 24 1-24 1-24 (420)
31 PRK15300 fimbrial protein StiA 32.7 31 0.00068 23.8 1.7 17 1-17 1-17 (179)
32 PF13073 DUF3937: Protein of u 32.2 38 0.00082 21.4 1.8 21 1-21 1-21 (73)
33 PF15240 Pro-rich: Proline-ric 31.2 35 0.00075 25.0 1.7 8 12-19 8-15 (179)
34 TIGR01495 ETRAMP Plasmodium ri 30.5 46 0.00099 21.4 2.0 6 1-6 1-6 (85)
35 COG4744 Uncharacterized conser 29.8 52 0.0011 22.7 2.3 13 7-19 32-44 (121)
36 PF09716 ETRAMP: Malarial earl 29.6 46 0.00099 21.0 1.9 6 1-6 1-6 (84)
37 TIGR02209 ftsL_broad cell divi 29.1 72 0.0016 19.1 2.7 13 7-19 4-16 (85)
38 PRK07718 fliL flagellar basal 28.5 73 0.0016 21.6 2.9 17 3-19 1-17 (142)
39 PF05581 MCP_N: Vibrio chemota 27.4 21 0.00044 23.8 0.0 23 1-23 1-24 (103)
40 PF07265 TAP35_44: Tapetum spe 27.3 75 0.0016 21.8 2.7 17 3-19 1-17 (119)
41 PF04999 FtsL: Cell division p 27.1 54 0.0012 20.4 1.9 15 5-19 13-27 (97)
42 PF11949 DUF3466: Protein of u 26.5 47 0.001 28.1 2.0 18 3-20 1-18 (599)
43 PRK10540 lipoprotein; Provisio 26.0 89 0.0019 19.4 2.7 24 1-24 1-24 (72)
44 PRK09810 entericidin A; Provis 26.0 83 0.0018 17.8 2.3 8 5-12 3-10 (41)
45 PLN03024 Putative EG45-like do 25.8 54 0.0012 22.3 1.8 17 3-19 1-17 (125)
46 PF07312 DUF1459: Protein of u 25.7 61 0.0013 21.1 2.0 17 3-19 2-18 (84)
47 PF05324 Sperm_Ag_HE2: Sperm a 25.5 95 0.002 19.7 2.8 30 10-42 7-36 (73)
48 PF11247 DUF2675: Protein of u 24.4 12 0.00026 25.0 -1.5 9 1-9 1-9 (98)
49 PRK14125 cell division suppres 24.4 1.5E+02 0.0032 19.3 3.7 15 28-42 32-46 (103)
50 COG1930 CbiN ABC-type cobalt t 24.1 1E+02 0.0022 20.5 2.9 7 3-9 1-7 (97)
51 PF06873 SerH: Cell surface im 23.9 1.6E+02 0.0034 24.1 4.4 8 40-48 25-32 (403)
52 PF11120 DUF2636: Protein of u 22.3 95 0.0021 19.0 2.3 20 1-20 1-20 (62)
53 TIGR01386 cztS_silS_copS heavy 22.1 1.1E+02 0.0024 22.7 3.0 11 1-11 2-12 (457)
54 PF11912 DUF3430: Protein of u 22.0 81 0.0018 21.8 2.2 10 29-38 20-29 (212)
55 PF04304 DUF454: Protein of un 21.9 1.4E+02 0.0031 17.4 3.0 14 2-15 23-36 (71)
56 PRK02898 cobalt transport prot 21.7 1.2E+02 0.0026 20.2 2.8 15 10-24 10-24 (100)
57 PF13253 DUF4044: Protein of u 21.4 1.6E+02 0.0034 16.1 3.0 13 7-19 12-24 (35)
58 PF07803 GSG-1: GSG1-like prot 21.3 2.9E+02 0.0062 19.0 5.0 22 42-63 39-60 (118)
59 PHA00440 host protein H-NS-int 21.3 16 0.00034 24.5 -1.4 9 1-9 1-9 (98)
60 PF15284 PAGK: Phage-encoded v 21.2 1E+02 0.0023 18.9 2.3 15 5-19 2-16 (61)
61 PRK10549 signal transduction h 20.5 1E+02 0.0022 23.1 2.6 8 2-9 7-14 (466)
62 TIGR03493 cellullose_BcsF cell 20.5 1.1E+02 0.0023 19.0 2.2 20 1-20 1-20 (62)
63 PF02553 CbiN: Cobalt transpor 20.4 1.2E+02 0.0025 19.2 2.5 18 5-22 3-20 (74)
64 PF09889 DUF2116: Uncharacteri 20.2 1.2E+02 0.0026 18.3 2.4 7 8-14 40-46 (59)
No 1
>PF05498 RALF: Rapid ALkalinization Factor (RALF) ; InterPro: IPR008801 RALF, a 5 kDa ubiquitous polypeptide in plants, arrests root growth and development.
Probab=99.83 E-value=6e-21 Score=118.34 Aligned_cols=45 Identities=40% Similarity=0.854 Sum_probs=38.7
Q ss_pred ccceeccCCCCCCCCCCCCCCC-C-CCC-CCCCCCCCCCCCCccccccC
Q 041712 29 EAKEIGYGAIGAGGNPGCSPVH-P-ELC-KMEPGNPYHRGCENEAQCRG 74 (81)
Q Consensus 29 ~~~yIsYgal~~d~~pgC~~~~-~-~~C-~~~paNpY~RGC~~itrCr~ 74 (81)
.++||+||||++|.+| |.+.+ + ++| +++|||||+|||++||||||
T Consensus 19 ~~~yIsYgaL~~~~~p-c~~~g~~~~~c~~~~paNpY~RGC~~~~rCrr 66 (66)
T PF05498_consen 19 ARRYISYGALRRDRVP-CSPRGCSYYNCCPRQPANPYSRGCSKITRCRR 66 (66)
T ss_pred cCCeecchhccCCCCC-CCcccCCCcccCCCCCCCCCCCCCCccccCCC
Confidence 3499999999999999 65544 3 466 89999999999999999996
No 2
>PLN03222 rapid alkalinization factor 23-like protein; Provisional
Probab=99.78 E-value=5.2e-20 Score=125.12 Aligned_cols=44 Identities=39% Similarity=0.728 Sum_probs=40.3
Q ss_pred cceeccCCCCCCCCCCCCCCC--CCCCC-CCCCCCCCCCCCccccccC
Q 041712 30 AKEIGYGAIGAGGNPGCSPVH--PELCK-MEPGNPYHRGCENEAQCRG 74 (81)
Q Consensus 30 ~~yIsYgal~~d~~pgC~~~~--~~~C~-~~paNpY~RGC~~itrCr~ 74 (81)
.+||||+||++|++| |++++ .++|. ++|||||+|||++||||||
T Consensus 73 ~rYISYgALrrd~vP-CsrrG~SYynC~~~~~ANPY~RGCs~ITrCrR 119 (119)
T PLN03222 73 TKYISYGALRRNTVP-CSRRGASYYNCRRGAQANPYSRGCSAITRCRR 119 (119)
T ss_pred cCeecHHHhcCCCCC-CCCCCCCccccCCCCCCCCCCCCchhhccccC
Confidence 699999999999999 99874 57995 5899999999999999996
No 3
>PLN03221 rapid alkalinization factor 23; Provisional
Probab=99.78 E-value=8.8e-20 Score=126.34 Aligned_cols=44 Identities=36% Similarity=0.711 Sum_probs=40.1
Q ss_pred cceeccCCCCCCCCCCCCCCC--CCCCC-CCCCCCCCCCCCccccccC
Q 041712 30 AKEIGYGAIGAGGNPGCSPVH--PELCK-MEPGNPYHRGCENEAQCRG 74 (81)
Q Consensus 30 ~~yIsYgal~~d~~pgC~~~~--~~~C~-~~paNpY~RGC~~itrCr~ 74 (81)
++||||+||++|++| |++++ .++|. ++|||||+|||++||||||
T Consensus 91 ~rYISYgALrrd~vP-CsrrG~SYynC~~~~pANPY~RGCs~ITRCrR 137 (137)
T PLN03221 91 RRYISYGALRRNTIP-CSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137 (137)
T ss_pred CCccCHHHhccCCCC-CCCCCCCccccCCCCCCCCCCCCcccccccCC
Confidence 689999999999999 99875 47995 5899999999999999996
No 4
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=95.35 E-value=0.016 Score=37.93 Aligned_cols=13 Identities=31% Similarity=0.784 Sum_probs=9.9
Q ss_pred CCcchhHHHHHHHH
Q 041712 1 MMMSKRMMVFGVIM 14 (81)
Q Consensus 1 M~msk~~~v~~l~l 14 (81)
|+ ||.++++.|+|
T Consensus 1 Ma-SK~~llL~l~L 13 (95)
T PF07172_consen 1 MA-SKAFLLLGLLL 13 (95)
T ss_pred Cc-hhHHHHHHHHH
Confidence 88 99988876543
No 5
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=79.87 E-value=1.9 Score=30.64 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=17.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHh
Q 041712 1 MMMSKRMMVFGVIMVLTASIVM 22 (81)
Q Consensus 1 M~msk~~~v~~l~llv~~sl~~ 22 (81)
|.|.|++++.++++.+.++.++
T Consensus 1 ~~~~kkl~~~~v~~~l~lg~~s 22 (170)
T PRK12750 1 MKLAKKLVLAAVVLPLTLGTAS 22 (170)
T ss_pred CchHHHHHHHHHHHHHHHHhhh
Confidence 8999999998877766665443
No 6
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=78.18 E-value=2.6 Score=26.66 Aligned_cols=18 Identities=6% Similarity=0.080 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 041712 7 MMVFGVIMVLTASIVMVV 24 (81)
Q Consensus 7 ~~v~~l~llv~~sl~~~~ 24 (81)
+.|..|++||++.+|+..
T Consensus 4 ~Si~VLlaLvLIg~fAVq 21 (71)
T PF04202_consen 4 LSIAVLLALVLIGSFAVQ 21 (71)
T ss_pred hhHHHHHHHHHHhhheee
Confidence 444445555666667654
No 7
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=71.26 E-value=6.6 Score=22.11 Aligned_cols=17 Identities=12% Similarity=0.491 Sum_probs=10.9
Q ss_pred hhHHHHHHHHH-HHHHHH
Q 041712 5 KRMMVFGVIMV-LTASIV 21 (81)
Q Consensus 5 k~~~v~~l~ll-v~~sl~ 21 (81)
|+.++|+|+|+ ||+.++
T Consensus 14 r~Wi~F~l~mi~vFi~li 31 (38)
T PF09125_consen 14 RGWIAFALAMILVFIALI 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 55677887765 555554
No 8
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=71.14 E-value=5 Score=25.56 Aligned_cols=11 Identities=0% Similarity=0.099 Sum_probs=8.1
Q ss_pred CCcchhHHHHH
Q 041712 1 MMMSKRMMVFG 11 (81)
Q Consensus 1 M~msk~~~v~~ 11 (81)
|++.+|+.+.+
T Consensus 2 l~I~~KL~~~f 12 (181)
T PF12729_consen 2 LSIRTKLILGF 12 (181)
T ss_pred CcHHHHHHHHH
Confidence 67788888844
No 9
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=68.84 E-value=20 Score=20.66 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=11.8
Q ss_pred cchhHHHHHHHHHHHHHHHhhh
Q 041712 3 MSKRMMVFGVIMVLTASIVMVV 24 (81)
Q Consensus 3 msk~~~v~~l~llv~~sl~~~~ 24 (81)
|+|-++ |.-+|++|+|||...
T Consensus 1 Ma~ilK-FvY~mIiflslflv~ 21 (54)
T PF07127_consen 1 MAKILK-FVYAMIIFLSLFLVV 21 (54)
T ss_pred Cccchh-hHHHHHHHHHHHHhh
Confidence 445333 455566777776544
No 10
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=63.06 E-value=13 Score=24.58 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=14.7
Q ss_pred CCcchhHHHHH-HHHHHHHHHHhhh
Q 041712 1 MMMSKRMMVFG-VIMVLTASIVMVV 24 (81)
Q Consensus 1 M~msk~~~v~~-l~llv~~sl~~~~ 24 (81)
|.|.|++.++. +++++++-|++..
T Consensus 1 m~~~~~~~ll~~v~~l~~~pl~~~~ 25 (91)
T TIGR01165 1 MSMKKTIWLLAAVAALVVLPLLIYA 25 (91)
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcc
Confidence 78888776644 4455555566543
No 11
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=59.66 E-value=3 Score=24.89 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHH
Q 041712 6 RMMVFGVIMVLTAS 19 (81)
Q Consensus 6 ~~~v~~l~llv~~s 19 (81)
||.++.|+++||++
T Consensus 2 KLt~vliVavLllt 15 (75)
T PF02950_consen 2 KLTCVLIVAVLLLT 15 (75)
T ss_dssp --------------
T ss_pred CcchHHHHHHHHHH
Confidence 45566666666666
No 12
>PF09879 DUF2106: Predicted membrane protein (DUF2106); InterPro: IPR011313 [NiFe] hydrogenases function in H2 metabolism in a variety of microorganisms, enabling them to use H2 as a source of reducing equivalent under aerobic and anaerobic conditions [NiFe] hydrogenases consist of two subunits, hydrogenase large and hydrogenase small. The large subunit contains the binuclear [NiFe] active site, while the small subunit binds at least one [4Fe-4S] cluster []. Energy-converting [NiFe] hydrogenases (or [NiFe]-hydrogenase-3-type) form a distinct group within the [NiFe] hydrogenase family [, ]. Members of this subgroup include: Hydrogenase 3 and 4 (Hyc and Hyf) from Escherichia coli CO-induced hydrogenase (Coo) from Rhodospirillum rubrum Mbh hydrogenase from Pyrococcus furiosus Eha and Ehb hydrogenases from Methanothermobacter species Ech hydrogenase from Methanosarcina barkeri Energy-converting [NiFe] hydrogenases are membrane-bound enzymes with a six-subunit core: the large and small hydrogenase subunits, plus two hydrophilic proteins and two integral membrane proteins. Their large and small subunits show little sequence similarity to other [NiFe] hydrogenases, except for key conserved residues coordinating the active site and [FeS] cluster. However, they show considerable sequence similarity to the six-subunit, energy-conserving NADH:quinone oxidoreductases (complex I), which are present in cytoplasmic membranes of many bacteria and in inner mitochondrial membranes. However, the reactions they catalyse differ significantly from complex I. Energy-converting [NiFe] hydrogenases function as ion pumps. Eha and Ehb hydrogenases contain extra subunits in addition to those shared by other energy-converting [NiFe] hydrogenases (or [NiFe]-hydrogenase-3-type). Eha contains a 6[4Fe-4S] polyferredoxin, a 10[4F-4S] polyferredoxin, ten other predicted integral membrane proteins (EhaA IPR011306 from INTERPRO, EhaB IPR011314 from INTERPRO, EhaC IPR011316 from INTERPRO, EhaD IPR011308 from INTERPRO, EhaE IPR011317 from INTERPRO, EhaF IPR011313 from INTERPRO, EhaG IPR011311 from INTERPRO, EhaI IPR011318 from INTERPRO, EhaK IPR011319 from INTERPRO, EhaL IPR011305 from INTERPRO) and four hydrophobic subunits (EhaM, EhaR IPR014502 from INTERPRO, EhS, EhT) []. The ten predicted integral membrane proteins are absent from Ech, Coo, Hyc and Hyf complexes, which may have simpler membrane components than Eha. Eha and Ehb catalyse the reduction of low-potential redox carriers (e.g. ferredoxins or polyferredoxins), which then might function as electron donors to oxidoreductases. Based on sequence similarity and genome context analysis, other organisms such as Methanopyrus kandleri, Methanocaldococcus jannaschii, and Methanothermobacter marburgensis also encode Eha-like [NiFe]-hydrogenase-3-type complexes and have very similar eha operon structure. This entry represents small membrane proteins that are predicted to be the EhaF transmembrane subunits of multi-subunit membrane-bound [NiFe]-hydrogenase Eha complexes.
Probab=57.35 E-value=26 Score=25.13 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCCccc
Q 041712 55 KMEPGNPYHRGCENEA 70 (81)
Q Consensus 55 ~~~paNpY~RGC~~it 70 (81)
.+.|-|||-||=...+
T Consensus 55 ~~~pLaPYDRGGvpl~ 70 (153)
T PF09879_consen 55 AKSPLAPYDRGGVPLE 70 (153)
T ss_pred cCCCCCcccCCCCccC
Confidence 4578899999965543
No 13
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=54.97 E-value=4 Score=26.78 Aligned_cols=21 Identities=24% Similarity=0.524 Sum_probs=0.0
Q ss_pred CCcchhHHHHHHHHHHHHHHH
Q 041712 1 MMMSKRMMVFGVIMVLTASIV 21 (81)
Q Consensus 1 M~msk~~~v~~l~llv~~sl~ 21 (81)
|.+.|+++++.|+++++++++
T Consensus 1 M~~~kk~l~~~l~~~~la~~~ 21 (144)
T PF12869_consen 1 MKILKKILIIILILIVLAFII 21 (144)
T ss_dssp ---------------------
T ss_pred CchhhhHHHHHHHHHHHHHHH
Confidence 666787777666655555544
No 14
>COG4037 Predicted membrane protein [Function unknown]
Probab=51.82 E-value=22 Score=25.42 Aligned_cols=13 Identities=38% Similarity=0.692 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCCC
Q 041712 55 KMEPGNPYHRGCE 67 (81)
Q Consensus 55 ~~~paNpY~RGC~ 67 (81)
.+.|--||-||=-
T Consensus 59 ~kdPLAPYDRGGv 71 (163)
T COG4037 59 AKDPLAPYDRGGV 71 (163)
T ss_pred cCCCCCCccCCCC
Confidence 4578888988843
No 15
>PF07835 COX4_pro_2: Bacterial aa3 type cytochrome c oxidase subunit IV; InterPro: IPR012422 Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown []. ; PDB: 1QLE_D 1M57_J 1M56_J.
Probab=49.31 E-value=8.8 Score=21.85 Aligned_cols=18 Identities=11% Similarity=0.117 Sum_probs=7.9
Q ss_pred cchhHHHHHHHHHHHHHH
Q 041712 3 MSKRMMVFGVIMVLTASI 20 (81)
Q Consensus 3 msk~~~v~~l~llv~~sl 20 (81)
++|.-.+..+++++++++
T Consensus 24 ~~k~~~~~~~~~li~lai 41 (44)
T PF07835_consen 24 LTKWGTIAIAAILIFLAI 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 16
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=48.85 E-value=18 Score=20.22 Aligned_cols=17 Identities=24% Similarity=0.638 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHHH
Q 041712 5 KRMMVFGVIMVLTASIV 21 (81)
Q Consensus 5 k~~~v~~l~llv~~sl~ 21 (81)
+++-++++++++++.++
T Consensus 15 nk~a~~gl~il~~~vl~ 31 (56)
T PF12911_consen 15 NKLAVIGLIILLILVLL 31 (56)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 45556665555444433
No 17
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=40.36 E-value=15 Score=21.23 Aligned_cols=10 Identities=70% Similarity=1.331 Sum_probs=7.5
Q ss_pred eeccCCCCCC
Q 041712 32 EIGYGAIGAG 41 (81)
Q Consensus 32 yIsYgal~~d 41 (81)
.|+|+.+...
T Consensus 17 mIGY~viG~G 26 (47)
T PF11772_consen 17 MIGYGVIGDG 26 (47)
T ss_pred HeeeeeeCCC
Confidence 7889888654
No 18
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=40.25 E-value=25 Score=26.30 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=12.1
Q ss_pred CCcchhHHHHHHHHHHHHH
Q 041712 1 MMMSKRMMVFGVIMVLTAS 19 (81)
Q Consensus 1 M~msk~~~v~~l~llv~~s 19 (81)
|.+.|+++.+.++.++.++
T Consensus 1 ~~~~~~~~~~~~~~~l~~~ 19 (336)
T PRK00059 1 MKSIKKLVASLLVGVFIFS 19 (336)
T ss_pred CchHHHHHHHHHHHHHHHh
Confidence 7888887666555444444
No 19
>PRK10884 SH3 domain-containing protein; Provisional
Probab=39.58 E-value=37 Score=24.82 Aligned_cols=9 Identities=11% Similarity=0.117 Sum_probs=6.2
Q ss_pred cccceeccC
Q 041712 28 AEAKEIGYG 36 (81)
Q Consensus 28 ~~~~yIsYg 36 (81)
++.+||+=.
T Consensus 23 ~et~YIsD~ 31 (206)
T PRK10884 23 EEKRYVSDE 31 (206)
T ss_pred hccEEEEcc
Confidence 456799854
No 20
>PRK02710 plastocyanin; Provisional
Probab=39.39 E-value=50 Score=21.49 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=12.0
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 041712 3 MSKRMMVFGVIMVLTASIV 21 (81)
Q Consensus 3 msk~~~v~~l~llv~~sl~ 21 (81)
|+|++..+..+++++++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (119)
T PRK02710 1 MAKRLRSIAAALVAVVSSF 19 (119)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 7788888665555544433
No 21
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=37.26 E-value=12 Score=22.58 Aligned_cols=12 Identities=33% Similarity=0.673 Sum_probs=5.2
Q ss_pred CcccceeccCCC
Q 041712 27 GAEAKEIGYGAI 38 (81)
Q Consensus 27 ~~~~~yIsYgal 38 (81)
....+.|+|...
T Consensus 24 ~~~~~~i~YS~F 35 (110)
T PF06480_consen 24 NSQTKEISYSEF 35 (110)
T ss_dssp --SSEE--HHHH
T ss_pred cCCCcEECHHHH
Confidence 456678888653
No 22
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=36.67 E-value=58 Score=19.11 Aligned_cols=11 Identities=9% Similarity=0.002 Sum_probs=5.1
Q ss_pred chhHHHHHHHH
Q 041712 4 SKRMMVFGVIM 14 (81)
Q Consensus 4 sk~~~v~~l~l 14 (81)
-|+++.+.+++
T Consensus 2 mKk~i~~i~~~ 12 (48)
T PRK10081 2 VKKTIAAIFSV 12 (48)
T ss_pred hHHHHHHHHHH
Confidence 45555543333
No 23
>COG4808 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.12 E-value=34 Score=24.45 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=14.6
Q ss_pred CCcchhHHHHHHHHHHHHHHHhhhcCCcc
Q 041712 1 MMMSKRMMVFGVIMVLTASIVMVVKDGAE 29 (81)
Q Consensus 1 M~msk~~~v~~l~llv~~sl~~~~~~~~~ 29 (81)
|...+++..+.|+++++++| +++++.++
T Consensus 1 Mk~l~kl~~~~~alil~~sl-~gCgdkEe 28 (152)
T COG4808 1 MKALNKLFSLVVALVLVFSL-AGCGDKEE 28 (152)
T ss_pred ChhHHHHHHHHHHHHHHHHh-hhcCchhh
Confidence 66677665545555555553 34443333
No 24
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=35.91 E-value=40 Score=22.38 Aligned_cols=19 Identities=16% Similarity=0.447 Sum_probs=13.5
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 041712 3 MSKRMMVFGVIMVLTASIV 21 (81)
Q Consensus 3 msk~~~v~~l~llv~~sl~ 21 (81)
|++++.+++|.++-++..+
T Consensus 1 MaRRlwiLslLAVtLtVAL 19 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVAL 19 (100)
T ss_pred CchhhHHHHHHHHHHHHHh
Confidence 7899988887776555433
No 25
>COG4960 CpaA Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=35.54 E-value=40 Score=24.45 Aligned_cols=22 Identities=9% Similarity=0.157 Sum_probs=16.6
Q ss_pred CCcchhHHHHHHHHHHHHHHHh
Q 041712 1 MMMSKRMMVFGVIMVLTASIVM 22 (81)
Q Consensus 1 M~msk~~~v~~l~llv~~sl~~ 22 (81)
|.+|++++++.++..++++.++
T Consensus 27 ~~IpN~lv~~ll~~~~i~a~~~ 48 (168)
T COG4960 27 RTIPNRLVLVLLLAFAILAPVA 48 (168)
T ss_pred hhcchHHHHHHHHHHHHHHHHc
Confidence 6789998888877777776554
No 26
>TIGR01742 SA_tandem_lipo Staphylococcus tandem lipoproteins. Members of this family are predicted lipoproteins (mostly), found in Staphylococcus aureus in several different tandem clusters in pathogenicity islands. Members are also found, clustered, in Staphylococcus epidermidis.
Probab=35.50 E-value=20 Score=27.58 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=16.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHhhh
Q 041712 1 MMMSKRMMVFGVIMVLTASIVMVV 24 (81)
Q Consensus 1 M~msk~~~v~~l~llv~~sl~~~~ 24 (81)
|.-+|++.++..++++++++++++
T Consensus 1 m~~~kkl~l~i~~~il~I~~i~GC 24 (255)
T TIGR01742 1 MGYAKKIALYISALILIISFVVGC 24 (255)
T ss_pred CchHHHHHHHHHHHHHHheeeecc
Confidence 667787777665565666666666
No 27
>PTZ00102 disulphide isomerase; Provisional
Probab=35.48 E-value=40 Score=25.95 Aligned_cols=19 Identities=0% Similarity=0.179 Sum_probs=9.2
Q ss_pred CCcchhHHHHHHHHHHHHHH
Q 041712 1 MMMSKRMMVFGVIMVLTASI 20 (81)
Q Consensus 1 M~msk~~~v~~l~llv~~sl 20 (81)
|+| |+++++.+++++++++
T Consensus 1 ~~~-~~~~~~~~~~~~~~~~ 19 (477)
T PTZ00102 1 IGF-RSILSSLFLLLILLAF 19 (477)
T ss_pred CcH-HHHHHHHHHHHHHHHH
Confidence 555 5555444444444443
No 28
>PRK09738 small toxic polypeptide; Provisional
Probab=35.02 E-value=35 Score=20.28 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=10.5
Q ss_pred CCcchhHHHHHHHH
Q 041712 1 MMMSKRMMVFGVIM 14 (81)
Q Consensus 1 M~msk~~~v~~l~l 14 (81)
|+|.++..+++|++
T Consensus 1 mkmp~~~~~~~liv 14 (52)
T PRK09738 1 MKLPRSPLVWCVLI 14 (52)
T ss_pred CCCccceehhhHHH
Confidence 78888887777554
No 29
>PF08358 Flexi_CP_N: Carlavirus coat; InterPro: IPR013569 This domain is found together with the viral coat protein domain (IPR000052 from INTERPRO) in coat/capsid proteins of the plant infecting Carlavirus. It is required for genome encapsidation by forming ribonucleoprotein complexes along with TGB1 helicase and viral RNA. The N- and the C terminus of this coat protein can be exposed on the surface of the virus particle. The central core sequence may be important in maintaining correct tertiary structure of the coat protein and/or play a role in the interaction with the viral RNA. Coat proteins are often used to distinguish between Carlavirus isolates. In the coat protein amino acid sequences of definitive and tentative species of carlaviruses, there is a region of seven amino acids (GLGVPTE) that are conserved []. The complete coat protein (CP) sequences of 29 Indian Chrysanthemum virus B (CVB) isolates were highly heterogeneous, sharing nucleotide sequence identities of 74-98% [, ].
Probab=34.37 E-value=23 Score=20.96 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=18.8
Q ss_pred cccceeccCCCCCCCCCCCCCCCC-CCCCCCCCCCCCC
Q 041712 28 AEAKEIGYGAIGAGGNPGCSPVHP-ELCKMEPGNPYHR 64 (81)
Q Consensus 28 ~~~~yIsYgal~~d~~pgC~~~~~-~~C~~~paNpY~R 64 (81)
-.+..|..+++.-.++. -.+ ..=.+.++|||+|
T Consensus 13 ~~~~~v~N~~fE~GRP~----l~~~~~mr~d~tN~y~R 46 (52)
T PF08358_consen 13 RTASNVTNPGFEIGRPK----LEPSDDMRGDPTNPYSR 46 (52)
T ss_pred ccCCcccccccccCCcC----CcCchhhCCCcCcccCC
Confidence 34456666777664433 111 1114579999997
No 30
>COG2182 MalE Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism]
Probab=33.00 E-value=77 Score=25.68 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=17.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHhhh
Q 041712 1 MMMSKRMMVFGVIMVLTASIVMVV 24 (81)
Q Consensus 1 M~msk~~~v~~l~llv~~sl~~~~ 24 (81)
|.++++++++.+++++.|+.+.++
T Consensus 1 ~~~~~~~~~~~~~av~~l~~l~a~ 24 (420)
T COG2182 1 SKKLKKVLILAVVAVLALSALAAC 24 (420)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhc
Confidence 678888888887766666645454
No 31
>PRK15300 fimbrial protein StiA; Provisional
Probab=32.71 E-value=31 Score=23.75 Aligned_cols=17 Identities=12% Similarity=0.239 Sum_probs=10.2
Q ss_pred CCcchhHHHHHHHHHHH
Q 041712 1 MMMSKRMMVFGVIMVLT 17 (81)
Q Consensus 1 M~msk~~~v~~l~llv~ 17 (81)
|+|+++.+.+.++++++
T Consensus 1 mk~~~~~~~~~~~~~~~ 17 (179)
T PRK15300 1 MKLSLKTLTVALAAITL 17 (179)
T ss_pred CceeehhHHHHHHHHHh
Confidence 89996655554444433
No 32
>PF13073 DUF3937: Protein of unknown function (DUF3937)
Probab=32.17 E-value=38 Score=21.39 Aligned_cols=21 Identities=24% Similarity=0.634 Sum_probs=16.0
Q ss_pred CCcchhHHHHHHHHHHHHHHH
Q 041712 1 MMMSKRMMVFGVIMVLTASIV 21 (81)
Q Consensus 1 M~msk~~~v~~l~llv~~sl~ 21 (81)
|=--|+++-|+|.+.++++.+
T Consensus 1 mf~nkklir~gltlfv~L~vi 21 (73)
T PF13073_consen 1 MFTNKKLIRFGLTLFVFLSVI 21 (73)
T ss_pred CCccchhhhhhhHHHHHHHHH
Confidence 334578888999999998843
No 33
>PF15240 Pro-rich: Proline-rich
Probab=31.15 E-value=35 Score=24.96 Aligned_cols=8 Identities=25% Similarity=0.335 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 041712 12 VIMVLTAS 19 (81)
Q Consensus 12 l~llv~~s 19 (81)
++||+|.|
T Consensus 8 vALLALSS 15 (179)
T PF15240_consen 8 VALLALSS 15 (179)
T ss_pred HHHHHhhh
Confidence 44444444
No 34
>TIGR01495 ETRAMP Plasmodium ring stage membrane protein ETRAMP. These genes have been shown to be found in the sub-telomeric regions of both P. falciparum and P. yoelii chromosomes.
Probab=30.50 E-value=46 Score=21.36 Aligned_cols=6 Identities=50% Similarity=0.418 Sum_probs=4.5
Q ss_pred CCcchh
Q 041712 1 MMMSKR 6 (81)
Q Consensus 1 M~msk~ 6 (81)
|.+||-
T Consensus 1 MKisKi 6 (85)
T TIGR01495 1 MKVSKI 6 (85)
T ss_pred CchhHH
Confidence 788883
No 35
>COG4744 Uncharacterized conserved protein [Function unknown]
Probab=29.80 E-value=52 Score=22.72 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHH
Q 041712 7 MMVFGVIMVLTAS 19 (81)
Q Consensus 7 ~~v~~l~llv~~s 19 (81)
.+||+++++|+++
T Consensus 32 amVfsva~LI~lv 44 (121)
T COG4744 32 AMVFSVALLIALV 44 (121)
T ss_pred HHHHHHHHHHHHH
Confidence 4566676666665
No 36
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=29.60 E-value=46 Score=21.00 Aligned_cols=6 Identities=50% Similarity=0.490 Sum_probs=4.2
Q ss_pred CCcchh
Q 041712 1 MMMSKR 6 (81)
Q Consensus 1 M~msk~ 6 (81)
|..||-
T Consensus 1 MKi~kv 6 (84)
T PF09716_consen 1 MKISKV 6 (84)
T ss_pred CcHHHH
Confidence 777773
No 37
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=29.05 E-value=72 Score=19.09 Aligned_cols=13 Identities=15% Similarity=0.432 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 041712 7 MMVFGVIMVLTAS 19 (81)
Q Consensus 7 ~~v~~l~llv~~s 19 (81)
+.++.++++++++
T Consensus 4 l~~~l~~~v~~~~ 16 (85)
T TIGR02209 4 LYVLLLLAILVSA 16 (85)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 38
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=28.49 E-value=73 Score=21.59 Aligned_cols=17 Identities=12% Similarity=0.436 Sum_probs=9.5
Q ss_pred cchhHHHHHHHHHHHHH
Q 041712 3 MSKRMMVFGVIMVLTAS 19 (81)
Q Consensus 3 msk~~~v~~l~llv~~s 19 (81)
|=||++++.+++++.+.
T Consensus 1 ~kkkl~~i~~i~l~~l~ 17 (142)
T PRK07718 1 MKNKLIKIMLIILIVIA 17 (142)
T ss_pred CcchHHHHHHHHHHHHH
Confidence 44677776655444444
No 39
>PF05581 MCP_N: Vibrio chemotaxis protein N terminus; InterPro: IPR008762 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the N-terminal domain found in chemotaxis methyl-accepting proteins primarily from from Vibrio species.; PDB: 3C8C_A.
Probab=27.36 E-value=21 Score=23.85 Aligned_cols=23 Identities=17% Similarity=0.505 Sum_probs=0.0
Q ss_pred CCcchhHHHHH-HHHHHHHHHHhh
Q 041712 1 MMMSKRMMVFG-VIMVLTASIVMV 23 (81)
Q Consensus 1 M~msk~~~v~~-l~llv~~sl~~~ 23 (81)
|+.|+|+..-+ ++++|.++|+..
T Consensus 1 MKFshKIv~AsS~lLlvt~slls~ 24 (103)
T PF05581_consen 1 MKFSHKIVLASSLLLLVTVSLLSL 24 (103)
T ss_dssp ------------------------
T ss_pred CchhHHHHHHHHHHHHHHHHHHHH
Confidence 78899888844 667777776643
No 40
>PF07265 TAP35_44: Tapetum specific protein TAP35/TAP44; InterPro: IPR009891 This family consists of several plant tapetum specific proteins. Members of this family are found in Arabidopsis thaliana, Brassica napus and Sinapis alba. Members of this family may be involved in sporopollenin formation and/or deposition [].
Probab=27.27 E-value=75 Score=21.77 Aligned_cols=17 Identities=29% Similarity=0.249 Sum_probs=9.0
Q ss_pred cchhHHHHHHHHHHHHH
Q 041712 3 MSKRMMVFGVIMVLTAS 19 (81)
Q Consensus 3 msk~~~v~~l~llv~~s 19 (81)
|||--+|-+|+|+++..
T Consensus 1 MS~iSk~sslcLlll~~ 17 (119)
T PF07265_consen 1 MSKISKVSSLCLLLLVV 17 (119)
T ss_pred CchhHHHHHHHHHHHHH
Confidence 56655665555544443
No 41
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=27.13 E-value=54 Score=20.36 Aligned_cols=15 Identities=33% Similarity=0.665 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHHHHH
Q 041712 5 KRMMVFGVIMVLTAS 19 (81)
Q Consensus 5 k~~~v~~l~llv~~s 19 (81)
+++.++.++++++++
T Consensus 13 ~~l~i~l~~~v~~~a 27 (97)
T PF04999_consen 13 KKLIILLVIVVLISA 27 (97)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444444333333333
No 42
>PF11949 DUF3466: Protein of unknown function (DUF3466); InterPro: IPR022562 This family of bacterial proteins are functionally uncharacterised. Proteins in this family are typically between 564 to 612 amino acids in length.
Probab=26.47 E-value=47 Score=28.05 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=16.0
Q ss_pred cchhHHHHHHHHHHHHHH
Q 041712 3 MSKRMMVFGVIMVLTASI 20 (81)
Q Consensus 3 msk~~~v~~l~llv~~sl 20 (81)
|+|+++++.|++|+.++.
T Consensus 1 ~~k~lkL~avavL~a~s~ 18 (599)
T PF11949_consen 1 MSKKLKLLAVAVLVALST 18 (599)
T ss_pred CCchhhHHHHHHHHHhhh
Confidence 899999999999888884
No 43
>PRK10540 lipoprotein; Provisional
Probab=26.03 E-value=89 Score=19.43 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=10.7
Q ss_pred CCcchhHHHHHHHHHHHHHHHhhh
Q 041712 1 MMMSKRMMVFGVIMVLTASIVMVV 24 (81)
Q Consensus 1 M~msk~~~v~~l~llv~~sl~~~~ 24 (81)
|-|.|+.+...+++++...++..+
T Consensus 1 ~~~~~kr~~~~~~~~~~a~~L~gC 24 (72)
T PRK10540 1 MFVTSKKMAAAVLAITLAMSLSAC 24 (72)
T ss_pred CchHHHHHHHHHHHHHHHHHHhcc
Confidence 556665555443333332333444
No 44
>PRK09810 entericidin A; Provisional
Probab=25.98 E-value=83 Score=17.78 Aligned_cols=8 Identities=38% Similarity=0.713 Sum_probs=3.7
Q ss_pred hhHHHHHH
Q 041712 5 KRMMVFGV 12 (81)
Q Consensus 5 k~~~v~~l 12 (81)
|+++++.+
T Consensus 3 kk~~~l~~ 10 (41)
T PRK09810 3 KRLIVLVL 10 (41)
T ss_pred HHHHHHHH
Confidence 44444443
No 45
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=25.81 E-value=54 Score=22.30 Aligned_cols=17 Identities=41% Similarity=0.786 Sum_probs=10.2
Q ss_pred cchhHHHHHHHHHHHHH
Q 041712 3 MSKRMMVFGVIMVLTAS 19 (81)
Q Consensus 3 msk~~~v~~l~llv~~s 19 (81)
|||++.++.-+++.+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (125)
T PLN03024 1 MSKRILIFSTVLVFLFS 17 (125)
T ss_pred CceeeHHHHHHHHHHhh
Confidence 89998776533333333
No 46
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=25.66 E-value=61 Score=21.11 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=12.4
Q ss_pred cchhHHHHHHHHHHHHH
Q 041712 3 MSKRMMVFGVIMVLTAS 19 (81)
Q Consensus 3 msk~~~v~~l~llv~~s 19 (81)
-+|.++++.|++++|.|
T Consensus 2 F~Kc~~~l~l~~f~i~S 18 (84)
T PF07312_consen 2 FQKCIIVLLLCLFCISS 18 (84)
T ss_pred hHHHHHHHHHHHHHHhh
Confidence 36888888888776655
No 47
>PF05324 Sperm_Ag_HE2: Sperm antigen HE2; InterPro: IPR007988 This family consists of several variants of the human and chimpanzee (Pan troglodytes) sperm antigen proteins (HE2 and EP2 respectively). The EP2 gene codes for a family of androgen-dependent, epididymis-specific secretory proteins.The EP2 gene uses alternative promoters and differential splicing to produce a family of variant messages. The translated putative protein variants differ significantly from each other. Some of these putative proteins have similarity to beta-defensins, a family of antimicrobial peptides [].; GO: 0005576 extracellular region
Probab=25.52 E-value=95 Score=19.73 Aligned_cols=30 Identities=13% Similarity=0.036 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhhcCCcccceeccCCCCCCC
Q 041712 10 FGVIMVLTASIVMVVKDGAEAKEIGYGAIGAGG 42 (81)
Q Consensus 10 ~~l~llv~~sl~~~~~~~~~~~yIsYgal~~d~ 42 (81)
+++++++..-||.+. ..++||+..+...-+
T Consensus 7 ~~~sLLLvaLLfPG~---s~a~~vnh~~tegpr 36 (73)
T PF05324_consen 7 SFVSLLLVALLFPGS---SRARHVNHQGTEGPR 36 (73)
T ss_pred HHHHHHHHHHHccCc---ccccccccccccCCc
Confidence 344444444456544 778999998876533
No 48
>PF11247 DUF2675: Protein of unknown function (DUF2675) ; InterPro: IPR022611 Members in this family of proteins include Bacteriophage T7 gene 5.5; they have no known function.
Probab=24.41 E-value=12 Score=24.98 Aligned_cols=9 Identities=44% Similarity=0.707 Sum_probs=7.8
Q ss_pred CCcchhHHH
Q 041712 1 MMMSKRMMV 9 (81)
Q Consensus 1 M~msk~~~v 9 (81)
|+|+|+++|
T Consensus 1 MaiTKrfKV 9 (98)
T PF11247_consen 1 MAITKRFKV 9 (98)
T ss_pred CCccceEEE
Confidence 888888887
No 49
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=24.36 E-value=1.5e+02 Score=19.32 Aligned_cols=15 Identities=0% Similarity=-0.068 Sum_probs=7.9
Q ss_pred cccceeccCCCCCCC
Q 041712 28 AEAKEIGYGAIGAGG 42 (81)
Q Consensus 28 ~~~~yIsYgal~~d~ 42 (81)
+...|..|-.=..|.
T Consensus 32 ~~~~~~~~tV~~GDT 46 (103)
T PRK14125 32 DKNQYVEITVQEGDT 46 (103)
T ss_pred CCCCcEEEEECCCCC
Confidence 345677765443343
No 50
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=24.12 E-value=1e+02 Score=20.55 Aligned_cols=7 Identities=57% Similarity=0.819 Sum_probs=4.8
Q ss_pred cchhHHH
Q 041712 3 MSKRMMV 9 (81)
Q Consensus 3 msk~~~v 9 (81)
|||+.+.
T Consensus 1 m~kk~~~ 7 (97)
T COG1930 1 MSKKHML 7 (97)
T ss_pred CchHHHH
Confidence 6777755
No 51
>PF06873 SerH: Cell surface immobilisation antigen SerH; InterPro: IPR009670 This entry consists of several cell surface immobilisation antigen SerH proteins which seem to be specific to Tetrahymena thermophila. The SerH locus of T. thermophila is one of several paralogous loci with genes encoding variants of the major cell surface protein known as the immobilisation antigen (i-ag) [].
Probab=23.94 E-value=1.6e+02 Score=24.05 Aligned_cols=8 Identities=25% Similarity=0.463 Sum_probs=5.0
Q ss_pred CCCCCCCCC
Q 041712 40 AGGNPGCSP 48 (81)
Q Consensus 40 ~d~~pgC~~ 48 (81)
...|+ |..
T Consensus 25 G~dV~-Cs~ 32 (403)
T PF06873_consen 25 GADVT-CSG 32 (403)
T ss_pred CCccc-CCC
Confidence 34577 866
No 52
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=22.29 E-value=95 Score=19.04 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=12.7
Q ss_pred CCcchhHHHHHHHHHHHHHH
Q 041712 1 MMMSKRMMVFGVIMVLTASI 20 (81)
Q Consensus 1 M~msk~~~v~~l~llv~~sl 20 (81)
|.+|--+=++.|+++||+-|
T Consensus 1 M~i~DiiQii~l~AlI~~pL 20 (62)
T PF11120_consen 1 MNISDIIQIIILCALIFFPL 20 (62)
T ss_pred CCHHHHHHHHHHHHHHHHhH
Confidence 66666555566776666654
No 53
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=22.08 E-value=1.1e+02 Score=22.66 Aligned_cols=11 Identities=9% Similarity=0.138 Sum_probs=7.2
Q ss_pred CCcchhHHHHH
Q 041712 1 MMMSKRMMVFG 11 (81)
Q Consensus 1 M~msk~~~v~~ 11 (81)
|++..|+.+.+
T Consensus 2 ~si~~kL~l~~ 12 (457)
T TIGR01386 2 RSLTLRLALLF 12 (457)
T ss_pred cchhhhHHHHH
Confidence 56777777733
No 54
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=22.03 E-value=81 Score=21.79 Aligned_cols=10 Identities=0% Similarity=0.245 Sum_probs=5.3
Q ss_pred ccceeccCCC
Q 041712 29 EAKEIGYGAI 38 (81)
Q Consensus 29 ~~~yIsYgal 38 (81)
...||....-
T Consensus 20 ~~~yvn~~py 29 (212)
T PF11912_consen 20 SSQYVNFQPY 29 (212)
T ss_pred CCcEEEEEEe
Confidence 4456665544
No 55
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=21.89 E-value=1.4e+02 Score=17.43 Aligned_cols=14 Identities=7% Similarity=0.325 Sum_probs=8.6
Q ss_pred CcchhHHHHHHHHH
Q 041712 2 MMSKRMMVFGVIMV 15 (81)
Q Consensus 2 ~msk~~~v~~l~ll 15 (81)
+||++-++..++++
T Consensus 23 ~i~~k~K~~a~~~m 36 (71)
T PF04304_consen 23 GIPRKAKIRALLMM 36 (71)
T ss_pred CcCHHHHHHHHHHH
Confidence 46777777554443
No 56
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=21.65 E-value=1.2e+02 Score=20.23 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhhh
Q 041712 10 FGVIMVLTASIVMVV 24 (81)
Q Consensus 10 ~~l~llv~~sl~~~~ 24 (81)
+.+++++++.|++..
T Consensus 10 ~~vi~l~~~pl~~~~ 24 (100)
T PRK02898 10 LLVILLAVLPLFIYS 24 (100)
T ss_pred HHHHHHHHHHHHhhc
Confidence 445555666666543
No 57
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=21.38 E-value=1.6e+02 Score=16.10 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 041712 7 MMVFGVIMVLTAS 19 (81)
Q Consensus 7 ~~v~~l~llv~~s 19 (81)
+..+.+.+|+++.
T Consensus 12 iT~v~v~lM~i~t 24 (35)
T PF13253_consen 12 ITMVVVWLMLILT 24 (35)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 58
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=21.30 E-value=2.9e+02 Score=19.04 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=15.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 041712 42 GNPGCSPVHPELCKMEPGNPYH 63 (81)
Q Consensus 42 ~~pgC~~~~~~~C~~~paNpY~ 63 (81)
.-|-|++....+|..-+.+...
T Consensus 39 pKPlC~~~~~~~Ci~~~~~~~~ 60 (118)
T PF07803_consen 39 PKPLCGKGKGTNCIHFPSNSDS 60 (118)
T ss_pred CCCCCCccccCcCcCCCCCCcc
Confidence 3456988777889766666654
No 59
>PHA00440 host protein H-NS-interacting protein
Probab=21.30 E-value=16 Score=24.48 Aligned_cols=9 Identities=44% Similarity=0.700 Sum_probs=7.9
Q ss_pred CCcchhHHH
Q 041712 1 MMMSKRMMV 9 (81)
Q Consensus 1 M~msk~~~v 9 (81)
|+|+|+++|
T Consensus 1 MaitKrfkV 9 (98)
T PHA00440 1 MAMTKKFKV 9 (98)
T ss_pred CCccceEEE
Confidence 889998888
No 60
>PF15284 PAGK: Phage-encoded virulence factor
Probab=21.18 E-value=1e+02 Score=18.91 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHHHH
Q 041712 5 KRMMVFGVIMVLTAS 19 (81)
Q Consensus 5 k~~~v~~l~llv~~s 19 (81)
|+++=++|+|+++|+
T Consensus 2 kk~ksifL~l~~~Ls 16 (61)
T PF15284_consen 2 KKFKSIFLALVFILS 16 (61)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444555555554444
No 61
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=20.52 E-value=1e+02 Score=23.15 Aligned_cols=8 Identities=0% Similarity=0.347 Sum_probs=4.4
Q ss_pred CcchhHHH
Q 041712 2 MMSKRMMV 9 (81)
Q Consensus 2 ~msk~~~v 9 (81)
++.+|+.+
T Consensus 7 si~~kl~~ 14 (466)
T PRK10549 7 GITGKLFL 14 (466)
T ss_pred hHHHHHHH
Confidence 44556555
No 62
>TIGR03493 cellullose_BcsF celllulose biosynthesis operon protein BcsF/YhjT. Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process. Members average about 63 amino acids in length and are not uncharacterized. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=20.47 E-value=1.1e+02 Score=18.96 Aligned_cols=20 Identities=10% Similarity=0.127 Sum_probs=12.5
Q ss_pred CCcchhHHHHHHHHHHHHHH
Q 041712 1 MMMSKRMMVFGVIMVLTASI 20 (81)
Q Consensus 1 M~msk~~~v~~l~llv~~sl 20 (81)
|.+|--+-++.|+++||+-|
T Consensus 1 M~i~DilQli~lcALIf~pL 20 (62)
T TIGR03493 1 MNISDILQLVLLCALIFFPL 20 (62)
T ss_pred CCHHHHHHHHHHHHHHHHhH
Confidence 66666555566776666654
No 63
>PF02553 CbiN: Cobalt transport protein component CbiN; InterPro: IPR003705 The cobalt transport protein CbiN is part of the active cobalt transport system involved in uptake of cobalt in to the cell involved with cobalamin biosynthesis (vitamin B12). It has been suggested that CbiN may function as the periplasmic binding protein component of the active cobalt transport system [].; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process, 0016020 membrane
Probab=20.37 E-value=1.2e+02 Score=19.17 Aligned_cols=18 Identities=6% Similarity=0.301 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 041712 5 KRMMVFGVIMVLTASIVM 22 (81)
Q Consensus 5 k~~~v~~l~llv~~sl~~ 22 (81)
|-++++.+++++++.|++
T Consensus 3 n~~l~~~vv~l~~~pl~~ 20 (74)
T PF02553_consen 3 NLLLLLLVVALAVVPLFL 20 (74)
T ss_pred eeHHHHHHHHHHHHHHHH
Confidence 333444455556666665
No 64
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=20.24 E-value=1.2e+02 Score=18.25 Aligned_cols=7 Identities=29% Similarity=0.334 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 041712 8 MVFGVIM 14 (81)
Q Consensus 8 ~v~~l~l 14 (81)
.++++++
T Consensus 40 ~i~~~~~ 46 (59)
T PF09889_consen 40 YIFFGIF 46 (59)
T ss_pred HHHHHHH
Confidence 3433333
Done!