Query 041712
Match_columns 81
No_of_seqs 101 out of 187
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 16:53:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qle_D Cytochrome AA3, ccytoch 65.5 2 6.8E-05 23.7 0.8 19 3-21 23-41 (43)
2 1m56_D Cytochrome C oxidase; m 61.7 3 0.0001 23.8 1.1 19 3-21 31-49 (51)
3 2xgr_A SPD1 nuclease, putative 33.8 9.9 0.00034 27.9 0.3 20 1-20 1-20 (252)
4 3o0r_C Nitric oxide reductase 28.8 54 0.0018 20.1 3.1 7 3-9 5-11 (146)
5 3lay_A Zinc resistance-associa 27.5 13 0.00044 25.6 0.0 19 1-19 25-45 (175)
6 2cvc_A Cytochrome CC3, high-mo 21.7 19 0.00066 28.1 0.0 18 1-18 1-18 (545)
7 2jwa_A Receptor tyrosine-prote 17.0 1.2E+02 0.004 16.6 2.6 11 10-20 19-29 (44)
8 3s8f_B Cytochrome C oxidase su 15.6 85 0.0029 21.1 2.1 6 8-13 19-24 (168)
9 2cav_A Protein (canavalin); vi 15.2 34 0.0011 26.4 0.0 19 1-19 1-19 (445)
10 3u7v_A Beta-galactosidase; str 14.7 35 0.0012 27.5 0.0 22 1-22 8-29 (552)
No 1
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=65.47 E-value=2 Score=23.75 Aligned_cols=19 Identities=0% Similarity=0.176 Sum_probs=9.6
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 041712 3 MSKRMMVFGVIMVLTASIV 21 (81)
Q Consensus 3 msk~~~v~~l~llv~~sl~ 21 (81)
++|...+..+++++++++|
T Consensus 23 ~~k~gt~~~~~~ll~maif 41 (43)
T 1qle_D 23 GATWVSILSIAVLVFLALA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4454444445555555544
No 2
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=61.66 E-value=3 Score=23.77 Aligned_cols=19 Identities=16% Similarity=0.116 Sum_probs=10.3
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 041712 3 MSKRMMVFGVIMVLTASIV 21 (81)
Q Consensus 3 msk~~~v~~l~llv~~sl~ 21 (81)
++|...+..+++++++++|
T Consensus 31 ~~k~gt~~~~~~ll~laif 49 (51)
T 1m56_D 31 MVTWAAVVIVAALIFLALA 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554
No 3
>2xgr_A SPD1 nuclease, putative DNAse; hydrolase, metal binding; 1.70A {Streptococcus pyogenes serotype M1} PDB: 2xh3_A
Probab=33.79 E-value=9.9 Score=27.90 Aligned_cols=20 Identities=25% Similarity=0.271 Sum_probs=0.0
Q ss_pred CCcchhHHHHHHHHHHHHHH
Q 041712 1 MMMSKRMMVFGVIMVLTASI 20 (81)
Q Consensus 1 M~msk~~~v~~l~llv~~sl 20 (81)
|..||-.+-+..+++.+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (252)
T 2xgr_A 1 MKLSKQKASLLTAVLLLLSL 20 (252)
T ss_dssp --------------------
T ss_pred CccchhhhhHHHHHHHHHhh
Confidence 77888555444444444444
No 4
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=28.76 E-value=54 Score=20.13 Aligned_cols=7 Identities=29% Similarity=0.330 Sum_probs=4.0
Q ss_pred cchhHHH
Q 041712 3 MSKRMMV 9 (81)
Q Consensus 3 msk~~~v 9 (81)
|+|++..
T Consensus 5 m~~~~~~ 11 (146)
T 3o0r_C 5 FTKGMAR 11 (146)
T ss_dssp CCHHHHH
T ss_pred HHHHHHH
Confidence 6766543
No 5
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=27.51 E-value=13 Score=25.64 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=0.0
Q ss_pred CCcchhHHHHH--HHHHHHHH
Q 041712 1 MMMSKRMMVFG--VIMVLTAS 19 (81)
Q Consensus 1 M~msk~~~v~~--l~llv~~s 19 (81)
|.+.|++.+.. |++|++.|
T Consensus 25 Mk~~kk~~la~~al~~l~l~s 45 (175)
T 3lay_A 25 MKRNNKSAIALIALSLLALSS 45 (175)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 78888877643 44334443
No 6
>2cvc_A Cytochrome CC3, high-molecular-weight cytochrome C precursor; electron transport; HET: HEM; 2.00A {Desulfovibrio vulgaris} SCOP: a.138.1.1 PDB: 1gws_A* 1h29_A*
Probab=21.67 E-value=19 Score=28.07 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=0.0
Q ss_pred CCcchhHHHHHHHHHHHH
Q 041712 1 MMMSKRMMVFGVIMVLTA 18 (81)
Q Consensus 1 M~msk~~~v~~l~llv~~ 18 (81)
|.-.|+++-|.++|+|++
T Consensus 1 m~~~kr~~~~~~~~~~l~ 18 (545)
T 2cvc_A 1 MRNGRTLLRWAGVLAATA 18 (545)
T ss_dssp ------------------
T ss_pred CCccchhHHHHHHHHHHH
Confidence 666788776654444433
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=17.01 E-value=1.2e+02 Score=16.58 Aligned_cols=11 Identities=18% Similarity=0.694 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 041712 10 FGVIMVLTASI 20 (81)
Q Consensus 10 ~~l~llv~~sl 20 (81)
+++.+++++++
T Consensus 19 VGvll~vi~~l 29 (44)
T 2jwa_A 19 VGILLVVVLGV 29 (44)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55444444443
No 8
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=15.57 E-value=85 Score=21.13 Aligned_cols=6 Identities=17% Similarity=0.628 Sum_probs=2.5
Q ss_pred HHHHHH
Q 041712 8 MVFGVI 13 (81)
Q Consensus 8 ~v~~l~ 13 (81)
.+++++
T Consensus 19 ~~~~~~ 24 (168)
T 3s8f_B 19 LAFSLA 24 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334443
No 9
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=15.23 E-value=34 Score=26.36 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=0.0
Q ss_pred CCcchhHHHHHHHHHHHHH
Q 041712 1 MMMSKRMMVFGVIMVLTAS 19 (81)
Q Consensus 1 M~msk~~~v~~l~llv~~s 19 (81)
|+|..++-++.|+.++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (445)
T 2cav_A 1 MAFSARFPLWLLLGVVLLA 19 (445)
T ss_dssp -------------------
T ss_pred CCccccchHHHHHHHHHHH
Confidence 7899987777666455553
No 10
>3u7v_A Beta-galactosidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel, glyco_hydro_42; HET: MSE; 1.80A {Caulobacter crescentus}
Probab=14.73 E-value=35 Score=27.50 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=0.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHh
Q 041712 1 MMMSKRMMVFGVIMVLTASIVM 22 (81)
Q Consensus 1 M~msk~~~v~~l~llv~~sl~~ 22 (81)
|+||+--..++|+|+|.+.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~ 29 (552)
T 3u7v_A 8 MGMSRFATAVGLALALVCGPLA 29 (552)
T ss_dssp ----------------------
T ss_pred hhhHHHHHHHHHHHHHHhhccc
Confidence 8999988889998888888643
Done!