Query 041712
Match_columns 81
No_of_seqs 101 out of 187
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 16:53:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041712.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041712hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qled_ f.23.8.1 (D:) Bacteria 77.3 0.4 2.9E-05 25.6 1.0 20 2-21 22-41 (43)
2 d1m56d_ f.23.8.1 (D:) Bacteria 76.7 0.51 3.7E-05 25.0 1.4 20 2-21 21-40 (42)
3 d1xmeb2 f.17.2.1 (B:3-36) Bact 65.2 3.3 0.00024 20.4 2.9 18 5-22 14-32 (34)
4 d1omca_ g.3.6.1 (A:) Conotoxin 17.9 14 0.001 17.2 0.2 14 52-66 13-26 (27)
5 d2v5za2 d.16.1.5 (A:290-401) M 16.2 22 0.0016 19.2 0.9 10 58-67 100-109 (112)
6 d2dw4a3 d.16.1.5 (A:655-763) L 15.7 24 0.0018 18.8 0.9 10 57-66 97-106 (109)
7 d1q90g_ f.23.26.1 (G:) PetG su 14.3 50 0.0036 15.6 1.8 16 8-23 9-24 (30)
8 d1b5qa2 d.16.1.5 (A:294-405) P 11.1 39 0.0029 18.0 0.9 10 57-66 100-109 (112)
9 d2e74g1 f.23.26.1 (G:9-35) Pet 9.8 97 0.0071 14.0 2.4 15 8-22 1-15 (27)
10 d1ubdc1 g.37.1.1 (C:295-322) Y 8.8 49 0.0035 15.4 0.6 9 63-71 6-14 (28)
No 1
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=77.25 E-value=0.4 Score=25.57 Aligned_cols=20 Identities=0% Similarity=0.144 Sum_probs=13.0
Q ss_pred CcchhHHHHHHHHHHHHHHH
Q 041712 2 MMSKRMMVFGVIMVLTASIV 21 (81)
Q Consensus 2 ~msk~~~v~~l~llv~~sl~ 21 (81)
.++.+..++.+++++|+++|
T Consensus 22 ~~~t~~~i~~i~~liflAi~ 41 (43)
T d1qled_ 22 KGATWVSILSIAVLVFLALA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45566666667777777754
No 2
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=76.71 E-value=0.51 Score=25.03 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=12.8
Q ss_pred CcchhHHHHHHHHHHHHHHH
Q 041712 2 MMSKRMMVFGVIMVLTASIV 21 (81)
Q Consensus 2 ~msk~~~v~~l~llv~~sl~ 21 (81)
.++.+..|..+++++|+++|
T Consensus 21 k~~t~~~i~~i~~liflAi~ 40 (42)
T d1m56d_ 21 RMVTWAAVVIVAALIFLALA 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45556666667777777755
No 3
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=65.20 E-value=3.3 Score=20.44 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=11.1
Q ss_pred hhHHHHHHHHH-HHHHHHh
Q 041712 5 KRMMVFGVIMV-LTASIVM 22 (81)
Q Consensus 5 k~~~v~~l~ll-v~~sl~~ 22 (81)
|....|+|+|+ ||++|++
T Consensus 14 kgwlafslamlfvfialia 32 (34)
T d1xmeb2 14 KGWLAFSLAMLFVFIALIA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 45566777765 6666553
No 4
>d1omca_ g.3.6.1 (A:) Conotoxin {Sea snail (Conus geographus), G IVa [TaxId: 6491]}
Probab=17.94 E-value=14 Score=17.16 Aligned_cols=14 Identities=36% Similarity=0.757 Sum_probs=7.8
Q ss_pred CCCCCCCCCCCCCCC
Q 041712 52 ELCKMEPGNPYHRGC 66 (81)
Q Consensus 52 ~~C~~~paNpY~RGC 66 (81)
++|-+ .-|||+.-|
T Consensus 13 ynccr-scnpytkrc 26 (27)
T d1omca_ 13 YNCCR-SCNPYTKRC 26 (27)
T ss_dssp TCBSS-CEETTTTEE
T ss_pred cchhc-ccCcccccc
Confidence 44544 567777544
No 5
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.16 E-value=22 Score=19.23 Aligned_cols=10 Identities=30% Similarity=0.627 Sum_probs=7.0
Q ss_pred CCCCCCCCCC
Q 041712 58 PGNPYHRGCE 67 (81)
Q Consensus 58 paNpY~RGC~ 67 (81)
..+||+||+=
T Consensus 100 ~~dp~~~GsY 109 (112)
T d2v5za2 100 CEEQYSGGCY 109 (112)
T ss_dssp GGCTTTCSSS
T ss_pred CCCCccCccc
Confidence 3578888873
No 6
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.67 E-value=24 Score=18.77 Aligned_cols=10 Identities=30% Similarity=0.661 Sum_probs=7.7
Q ss_pred CCCCCCCCCC
Q 041712 57 EPGNPYHRGC 66 (81)
Q Consensus 57 ~paNpY~RGC 66 (81)
=..+||+||+
T Consensus 97 W~~dp~~~Gs 106 (109)
T d2dw4a3 97 WRADPWARGS 106 (109)
T ss_dssp TTTCTTTSSS
T ss_pred cCCCCccCEe
Confidence 3568999987
No 7
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=14.30 E-value=50 Score=15.57 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhh
Q 041712 8 MVFGVIMVLTASIVMV 23 (81)
Q Consensus 8 ~v~~l~llv~~sl~~~ 23 (81)
+|++|+-+-+..||.+
T Consensus 9 ivlGlipiTl~Glfv~ 24 (30)
T d1q90g_ 9 IVLGLVPVTIAGLFVT 24 (30)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 4566666666666644
No 8
>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
Probab=11.11 E-value=39 Score=18.02 Aligned_cols=10 Identities=10% Similarity=0.139 Sum_probs=7.6
Q ss_pred CCCCCCCCCC
Q 041712 57 EPGNPYHRGC 66 (81)
Q Consensus 57 ~paNpY~RGC 66 (81)
=..+||+||+
T Consensus 100 W~~dp~~~Gs 109 (112)
T d1b5qa2 100 WWSDRFYKGT 109 (112)
T ss_dssp TTTCTTTSSS
T ss_pred CCCCCCcccc
Confidence 3568899886
No 9
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.85 E-value=97 Score=14.05 Aligned_cols=15 Identities=13% Similarity=0.499 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHh
Q 041712 8 MVFGVIMVLTASIVM 22 (81)
Q Consensus 8 ~v~~l~llv~~sl~~ 22 (81)
+|++|+.+-+..||-
T Consensus 1 ivlgli~~tl~glf~ 15 (27)
T d2e74g1 1 LVLGLVFATLGGLFY 15 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CeeeehHHHHHHHHH
Confidence 356666665555553
No 10
>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.83 E-value=49 Score=15.39 Aligned_cols=9 Identities=33% Similarity=0.914 Sum_probs=0.0
Q ss_pred CCCCCcccc
Q 041712 63 HRGCENEAQ 71 (81)
Q Consensus 63 ~RGC~~itr 71 (81)
++||++..|
T Consensus 6 hkgC~K~Fr 14 (28)
T d1ubdc1 6 HKGCTKMFR 14 (28)
T ss_dssp STTCCCEES
T ss_pred cccHHHHhh
Done!