Your job contains 1 sequence.
>041714
MDGLEGPTSTTAIPAVDSNPPSPRLDPDFSPVGSPEHDIPDVPVPPSDDDHDHDHCEDPI
KDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFR
KLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHS
VENMQRIFAEAGKIKSICIRDPNVVEESKKKQQI
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 041714
(214 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2170478 - symbol:LARP6a "La related protein 6a... 511 5.2e-49 1
TAIR|locus:2089508 - symbol:LARP6c "La related protein 6c... 312 6.4e-28 1
TAIR|locus:2051734 - symbol:LARP6b "AT2G43970" species:37... 299 6.4e-26 1
DICTYBASE|DDB_G0281763 - symbol:DDB_G0281763 "Lupus La pr... 233 1.7e-19 1
UNIPROTKB|F1NJ86 - symbol:LARP7 "Uncharacterized protein"... 192 1.4e-17 2
SGD|S000002209 - symbol:LHP1 "RNA binding protein require... 210 4.1e-17 1
UNIPROTKB|F1NWE6 - symbol:LARP6 "Uncharacterized protein"... 208 3.3e-16 1
UNIPROTKB|D6RFF0 - symbol:LARP7 "La-related protein 7" sp... 198 7.7e-16 1
UNIPROTKB|E1BVY8 - symbol:LOC420093 "Uncharacterized prot... 195 1.6e-15 1
ZFIN|ZDB-GENE-030131-6896 - symbol:larp7 "La ribonucleopr... 203 1.9e-15 1
CGD|CAL0004304 - symbol:orf19.2795 species:5476 "Candida ... 196 2.2e-15 1
ZFIN|ZDB-GENE-030131-6403 - symbol:larp6 "La ribonucleopr... 201 2.4e-15 1
MGI|MGI:107634 - symbol:Larp7 "La ribonucleoprotein domai... 202 2.6e-15 1
FB|FBgn0033936 - symbol:CG17386 species:7227 "Drosophila ... 202 5.2e-15 1
RGD|1592474 - symbol:Larp7 "La ribonucleoprotein domain f... 199 5.4e-15 1
UNIPROTKB|Q5XI01 - symbol:Larp7 "La-related protein 7" sp... 199 5.4e-15 1
UNIPROTKB|F1MR14 - symbol:F1MR14 "Uncharacterized protein... 198 7.1e-15 1
UNIPROTKB|E2QW27 - symbol:LARP7 "Uncharacterized protein"... 198 7.2e-15 1
UNIPROTKB|Q4G0J3 - symbol:LARP7 "La-related protein 7" sp... 198 7.2e-15 1
UNIPROTKB|I3LNK9 - symbol:I3LNK9 "Uncharacterized protein... 197 9.2e-15 1
UNIPROTKB|F1S150 - symbol:LARP7 "Uncharacterized protein"... 197 9.2e-15 1
UNIPROTKB|E7ERC4 - symbol:SSB "Lupus La protein" species:... 184 2.3e-14 1
UNIPROTKB|E1BQG3 - symbol:LARP7 "Uncharacterized protein"... 192 3.4e-14 1
UNIPROTKB|F1P301 - symbol:SSB "Uncharacterized protein" s... 182 3.8e-14 1
POMBASE|SPAC57A10.10c - symbol:sla1 "La protein homolog" ... 182 5.8e-14 1
UNIPROTKB|E9PFH8 - symbol:SSB "Lupus La protein" species:... 184 7.8e-14 1
UNIPROTKB|Q9BRS8 - symbol:LARP6 "La-related protein 6" sp... 187 8.0e-14 1
UNIPROTKB|F1MAB1 - symbol:Ssb "Lupus La protein homolog" ... 184 9.2e-14 1
UNIPROTKB|P10881 - symbol:SSB "Lupus La protein homolog" ... 184 1.1e-13 1
UNIPROTKB|E2RH09 - symbol:SSB "Uncharacterized protein" s... 184 1.1e-13 1
UNIPROTKB|P05455 - symbol:SSB "Lupus La protein" species:... 184 1.1e-13 1
RGD|620804 - symbol:Ssb "Sjogren syndrome antigen B" spec... 184 1.2e-13 1
UNIPROTKB|Q66HM7 - symbol:Ssb "Sjogren syndrome antigen B... 184 1.2e-13 1
UNIPROTKB|F1MBD0 - symbol:LARP6 "Uncharacterized protein"... 184 1.2e-13 1
UNIPROTKB|F1SIT3 - symbol:LARP6 "Uncharacterized protein"... 185 1.3e-13 1
MGI|MGI:98423 - symbol:Ssb "Sjogren syndrome antigen B" s... 183 1.5e-13 1
MGI|MGI:1914807 - symbol:Larp6 "La ribonucleoprotein doma... 184 1.7e-13 1
RGD|1308414 - symbol:Larp6 "La ribonucleoprotein domain f... 184 1.7e-13 1
UNIPROTKB|F1S1V1 - symbol:SSB "Uncharacterized protein" s... 182 1.8e-13 1
UNIPROTKB|F1NYE7 - symbol:SSB "Uncharacterized protein" s... 182 1.8e-13 1
UNIPROTKB|F1PKV9 - symbol:LARP6 "Uncharacterized protein"... 182 2.1e-13 1
UNIPROTKB|Q5ZKS1 - symbol:SSB "Uncharacterized protein" s... 173 3.4e-13 1
ZFIN|ZDB-GENE-041008-244 - symbol:zgc:162969 "zgc:162969"... 179 5.4e-13 1
ZFIN|ZDB-GENE-030131-223 - symbol:ssb "Sjogren syndrome a... 175 1.0e-12 1
RGD|1592944 - symbol:LOC680385 "similar to Sjogren syndro... 173 1.7e-12 1
UNIPROTKB|E9PFL9 - symbol:SSB "Lupus La protein" species:... 166 1.9e-12 1
FB|FBgn0011638 - symbol:La "La autoantigen-like" species:... 171 2.6e-12 1
WB|WBGene00016653 - symbol:C44E4.4 species:6239 "Caenorha... 171 2.7e-12 1
ASPGD|ASPL0000060980 - symbol:AN1045 species:162425 "Emer... 171 2.8e-12 1
UNIPROTKB|D6RAF3 - symbol:LARP7 "La-related protein 7" sp... 164 3.1e-12 1
UNIPROTKB|D6RF49 - symbol:LARP7 "La-related protein 7" sp... 164 3.1e-12 1
TAIR|locus:2125702 - symbol:La1 "La protein 1" species:37... 169 5.5e-12 1
WB|WBGene00020097 - symbol:larp-1 species:6239 "Caenorhab... 173 9.4e-12 1
TAIR|locus:2125334 - symbol:LARP1c "La related protein 1c... 153 1.7e-11 2
MGI|MGI:2443114 - symbol:Larp4 "La ribonucleoprotein doma... 164 4.6e-11 1
UNIPROTKB|Q96J85 - symbol:LARP4 "La-related protein 4" sp... 158 6.4e-11 1
DICTYBASE|DDB_G0289333 - symbol:DDB_G0289333 species:4468... 161 7.7e-11 1
UNIPROTKB|E9PDG5 - symbol:LARP4 "La-related protein 4" sp... 158 9.2e-11 1
FB|FBgn0261618 - symbol:larp "La related protein" species... 152 1.6e-10 2
UNIPROTKB|G3XAA8 - symbol:LARP4 "La-related protein 4" sp... 158 1.8e-10 1
UNIPROTKB|F1SH87 - symbol:LARP4 "Uncharacterized protein"... 158 1.9e-10 1
FB|FBgn0260771 - symbol:Larp7 "La related protein 7" spec... 157 1.9e-10 1
UNIPROTKB|Q71RC2 - symbol:LARP4 "La-related protein 4" sp... 158 2.0e-10 1
TAIR|locus:2017809 - symbol:La2 "La protein 2" species:37... 153 2.6e-10 1
TAIR|locus:2156912 - symbol:LARP1b "AT5G66100" species:37... 153 3.3e-10 1
UNIPROTKB|F1MHD9 - symbol:LARP4 "Uncharacterized protein"... 155 3.4e-10 1
UNIPROTKB|E2R028 - symbol:LARP4 "Uncharacterized protein"... 154 5.4e-10 1
UNIPROTKB|F1PIU8 - symbol:LARP4 "Uncharacterized protein"... 154 5.5e-10 1
UNIPROTKB|H9KZD5 - symbol:LARP4 "Uncharacterized protein"... 151 1.2e-09 1
DICTYBASE|DDB_G0281835 - symbol:DDB_G0281835 species:4468... 143 2.9e-09 1
RGD|1306683 - symbol:Larp1 "La ribonucleoprotein domain f... 141 3.9e-09 2
UNIPROTKB|Q6PKG0 - symbol:LARP1 "La-related protein 1" sp... 140 4.8e-09 2
UNIPROTKB|F1M4K9 - symbol:LOC683071 "Protein LOC683071" s... 143 5.9e-09 1
UNIPROTKB|G3V0E9 - symbol:LARP1B "La-related protein 1B" ... 141 1.3e-08 1
FB|FBgn0035424 - symbol:CG11505 species:7227 "Drosophila ... 145 1.3e-08 1
UNIPROTKB|G3XAJ5 - symbol:LARP1B "La-related protein 1B" ... 141 2.5e-08 1
UNIPROTKB|Q659C4 - symbol:LARP1B "La-related protein 1B" ... 141 5.5e-08 1
MGI|MGI:1890165 - symbol:Larp1 "La ribonucleoprotein doma... 139 2.2e-07 1
UNIPROTKB|F1P339 - symbol:LARP1 "Uncharacterized protein"... 138 2.7e-07 1
UNIPROTKB|F1MZU1 - symbol:LARP1 "Uncharacterized protein"... 137 4.6e-07 1
SGD|S000002923 - symbol:SLF1 "RNA binding protein that as... 120 3.9e-05 1
SGD|S000000542 - symbol:SRO9 "Cytoplasmic RNA-binding pro... 118 6.6e-05 1
UNIPROTKB|F1MHX7 - symbol:LARP4B "Uncharacterized protein... 117 0.00018 1
UNIPROTKB|F1P1X0 - symbol:LARP4B "Uncharacterized protein... 117 0.00019 1
CGD|CAL0005700 - symbol:SLF1 species:5476 "Candida albica... 113 0.00023 1
UNIPROTKB|Q5ADL6 - symbol:SLF1 "Potential polysome-associ... 113 0.00023 1
UNIPROTKB|F1RX46 - symbol:LARP4B "Uncharacterized protein... 113 0.00055 1
RGD|1310713 - symbol:Larp4b "La ribonucleoprotein domain ... 111 0.00085 1
POMBASE|SPAC1527.03 - symbol:SPAC1527.03 "RNA-binding pro... 109 0.00096 1
MGI|MGI:106330 - symbol:Larp4b "La ribonucleoprotein doma... 111 0.00099 1
>TAIR|locus:2170478 [details] [associations]
symbol:LARP6a "La related protein 6a" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006944 "cellular membrane fusion" evidence=RCA] [GO:0048193
"Golgi vesicle transport" evidence=RCA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 HSSP:P19339 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 KO:K15191 HOGENOM:HOG000244026
EMBL:AY050403 EMBL:BT000588 IPI:IPI00526923 RefSeq:NP_851141.1
UniGene:At.9180 ProteinModelPortal:Q94A38 SMR:Q94A38 IntAct:Q94A38
STRING:Q94A38 PRIDE:Q94A38 EnsemblPlants:AT5G46250.1 GeneID:834667
KEGG:ath:AT5G46250 TAIR:At5g46250 InParanoid:Q94A38 OMA:WRNGMRV
PhylomeDB:Q94A38 ProtClustDB:CLSN2680453 Genevestigator:Q94A38
Uniprot:Q94A38
Length = 422
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 103/158 (65%), Positives = 131/158 (82%)
Query: 57 EDPIKDH-ENS-STPAVLT--DDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVP 112
ED +DH EN T V+ D+L Q+II+QVEYYFSDENLPTDK+++N +++NK+GFVP
Sbjct: 80 EDRDQDHGENPVETDGVVVPIDELNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVP 139
Query: 113 ISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLV 172
IS IA+F K+K+LTR+HA IV+AL+ESS LVVS++ KKVKRL+PLP E+RDPK+FTVLV
Sbjct: 140 ISTIATFHKMKKLTRDHALIVSALKESSFLVVSADEKKVKRLSPLP--EIRDPKIFTVLV 197
Query: 173 ENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEESKK 210
ENLPEDHS EN++ IF +AG IKS+ I DPN VEES+K
Sbjct: 198 ENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEESEK 235
>TAIR|locus:2089508 [details] [associations]
symbol:LARP6c "La related protein 6c" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR009818
Pfam:PF07145 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 KO:K15191 HOGENOM:HOG000244026 EMBL:AP002041
IPI:IPI00538604 RefSeq:NP_188540.1 UniGene:At.53384
ProteinModelPortal:Q9LHL3 SMR:Q9LHL3 PRIDE:Q9LHL3
EnsemblPlants:AT3G19090.1 GeneID:821444 KEGG:ath:AT3G19090
TAIR:At3g19090 eggNOG:NOG304440 InParanoid:Q9LHL3 OMA:FVPRSHT
PhylomeDB:Q9LHL3 ProtClustDB:CLSN2684555 Genevestigator:Q9LHL3
Uniprot:Q9LHL3
Length = 455
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 66/153 (43%), Positives = 99/153 (64%)
Query: 59 PIKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIAS 118
P + +SS+ +L+DDL+ +I+KQVEY F+D +L ++ + I K+ EG+VP+S IAS
Sbjct: 127 PASQNSSSSSKNLLSDDLRLKIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIAS 186
Query: 119 FRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPED 178
+K+K LT NH + ALR SS LVVS +GKKVKR + + + + TV+ ENLP+D
Sbjct: 187 TKKIKALTSNHHLVSLALRSSSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAENLPDD 246
Query: 179 HSVENMQRIFAEAGKIKSICIRDPNVVEESKKK 211
HS +N+++IF G +K+I I P S+ K
Sbjct: 247 HSYQNLEKIFGVVGNVKAIRICHPPESNSSRPK 279
>TAIR|locus:2051734 [details] [associations]
symbol:LARP6b "AT2G43970" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302 GO:GO:0005634
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
EMBL:AC004005 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 KO:K15191 UniGene:At.20914 EMBL:AF332565
EMBL:AF375410 EMBL:AF367277 EMBL:AY056238 EMBL:AY129474
IPI:IPI00531024 PIR:T00677 RefSeq:NP_566004.1 UniGene:At.20070
UniGene:At.74750 UniGene:At.74872 UniGene:At.74992
ProteinModelPortal:O80567 SMR:O80567 IntAct:O80567 PRIDE:O80567
EnsemblPlants:AT2G43970.1 GeneID:819002 KEGG:ath:AT2G43970
TAIR:At2g43970 HOGENOM:HOG000244026 InParanoid:O80567 OMA:HEEDDAT
PhylomeDB:O80567 ProtClustDB:CLSN2688918 ArrayExpress:O80567
Genevestigator:O80567 Uniprot:O80567
Length = 545
Score = 299 (110.3 bits), Expect = 6.4e-26, P = 6.4e-26
Identities = 55/126 (43%), Positives = 88/126 (69%)
Query: 72 LTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAW 131
L +D Q+I+ QVEYYFSD NL T ++M I K+ EG+VPI V+ASF+K+K + N++
Sbjct: 189 LPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQ 248
Query: 132 IVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEA 191
+ A L+ S+ L VS +GKKV+R++P+ + + + + ++ ENLPEDH +N+ +IF+
Sbjct: 249 LAAVLQNSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKIFSTV 308
Query: 192 GKIKSI 197
G +K+I
Sbjct: 309 GSVKNI 314
>DICTYBASE|DDB_G0281763 [details] [associations]
symbol:DDB_G0281763 "Lupus La protein" species:44689
"Dictyostelium discoideum" [GO:0045335 "phagocytic vesicle"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 SMART:SM00360
dictyBase:DDB_G0281763 GO:GO:0005634 GO:GO:0045335 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 EMBL:AAFI02000042 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
Pfam:PF05383 SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
RefSeq:XP_640625.1 ProteinModelPortal:Q54TG6 STRING:Q54TG6
EnsemblProtists:DDB0233755 GeneID:8623235 KEGG:ddi:DDB_G0281763
InParanoid:Q54TG6 OMA:NDDANAC ProtClustDB:CLSZ2430537
Uniprot:Q54TG6
Length = 354
Score = 233 (87.1 bits), Expect = 1.7e-19, P = 1.7e-19
Identities = 49/129 (37%), Positives = 80/129 (62%)
Query: 72 LTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAW 131
++++ +I+KQVEYYFSD N P DK++ + KN + ++ I VIASF ++K ++ +
Sbjct: 1 MSEETSTQILKQVEYYFSDSNFPRDKFLRSEAAKNVDNYISIDVIASFNRMKTISTDLQL 60
Query: 132 IVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEA 191
I AL++S+ L VS +GK V+RL+PLP + K T+ + PED ++E +Q F
Sbjct: 61 ITEALKKSTRLQVSEDGKMVRRLDPLP-ENIDCGK--TLYSKGWPEDTTIEKVQEFFNAN 117
Query: 192 GKIKSICIR 200
G K + +R
Sbjct: 118 GGYKVVSVR 126
>UNIPROTKB|F1NJ86 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:AADN02009328 IPI:IPI00598515
Ensembl:ENSGALT00000032138 ArrayExpress:F1NJ86 Uniprot:F1NJ86
Length = 233
Score = 192 (72.6 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 40/120 (33%), Positives = 73/120 (60%)
Query: 80 IIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES 139
I KQV+++F D NL D+++ I K+++G+V IS++ SF K+K+LT + I A++ S
Sbjct: 40 IAKQVDFWFGDVNLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARAVKSS 99
Query: 140 SLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICI 199
S++ + G +++R PL +D TV VE LP++ + ++R+F + G + + I
Sbjct: 100 SVVELDLEGTRIRRRRPLG-ERPKDVDSRTVYVELLPKNVNHSWIERVFGKCGNVVYVSI 158
Score = 36 (17.7 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 203 NVVEESKKKQQ 213
+VVEE KKK++
Sbjct: 220 SVVEEKKKKKK 230
>SGD|S000002209 [details] [associations]
symbol:LHP1 "RNA binding protein required for maturation of
tRNA and U6 snRNA" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0000049 "tRNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0008033 "tRNA processing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 SGD:S000002209 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006938 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0030529 GO:GO:0008033 GO:GO:0000049
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
OrthoDB:EOG43JGF6 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:L33023 EMBL:Z74099 EMBL:AY558373
EMBL:L13282 EMBL:X80801 PIR:B48600 RefSeq:NP_010232.1
ProteinModelPortal:P33399 SMR:P33399 DIP:DIP-6444N IntAct:P33399
MINT:MINT-652314 STRING:P33399 PaxDb:P33399 PeptideAtlas:P33399
EnsemblFungi:YDL051W GeneID:851509 KEGG:sce:YDL051W CYGD:YDL051w
OMA:NDGWVEL NextBio:968869 Genevestigator:P33399 GermOnline:YDL051W
Uniprot:P33399
Length = 275
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 55/156 (35%), Positives = 87/156 (55%)
Query: 57 EDPIKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVI 116
E P + NS T ++ R +KQVE+YFS+ N P D+++ KN +G+VPIS I
Sbjct: 11 EKP-QSRRNSFAVIEFTPEVLDRCLKQVEFYFSEFNFPYDRFLRTTAEKN-DGWVPISTI 68
Query: 117 ASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLF----TVLV 172
A+F ++K+ R ++ ALR S +L VS++G+ VKR PL +T R+ ++ T+ V
Sbjct: 69 ATFNRMKKY-RPVDKVIEALRSSEILEVSADGENVKRRVPLDLTAARNARIEQNQRTLAV 127
Query: 173 ENLP-EDHSV-------ENMQRIFAEAGKIKSICIR 200
N P ED EN++ F + G+I + +R
Sbjct: 128 MNFPHEDVEASQIPELQENLEAFFKKLGEINQVRLR 163
>UNIPROTKB|F1NWE6 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 OMA:TSGGENE
GeneTree:ENSGT00510000048191 EMBL:AADN02040372 EMBL:AADN02040373
EMBL:AADN02040374 EMBL:AADN02040375 EMBL:AADN02040376
EMBL:AADN02040377 EMBL:AADN02040378 EMBL:AADN02040379
IPI:IPI00582301 Ensembl:ENSGALT00000006440 Uniprot:F1NWE6
Length = 444
Score = 208 (78.3 bits), Expect = 3.3e-16, P = 3.3e-16
Identities = 45/133 (33%), Positives = 82/133 (61%)
Query: 74 DDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIV 133
+DL Q+++ Q+EYYFSDENL D +++ +R+NK G+V + ++ SF+K+K LTR+
Sbjct: 45 NDLIQKLVAQIEYYFSDENLEKDAFLLKHVRRNKMGYVSVKLLTSFKKVKHLTRDWRTTT 104
Query: 134 AALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGK 193
AL+ S +L ++ + +KV+R P+PV + +LV ++ H + +Q + K
Sbjct: 105 HALKYSDMLELNDDNRKVRRKTPVPVFPSENLPTRMLLVYDI---HMISELQGL----NK 157
Query: 194 IKSICIRDPNVVE 206
++ CI++ V+E
Sbjct: 158 QENGCIQE-KVME 169
>UNIPROTKB|D6RFF0 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HOGENOM:HOG000113284
HGNC:HGNC:24912 ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00966774
ProteinModelPortal:D6RFF0 SMR:D6RFF0 Ensembl:ENST00000505034
ArrayExpress:D6RFF0 Bgee:D6RFF0 Uniprot:D6RFF0
Length = 299
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 46/140 (32%), Positives = 80/140 (57%)
Query: 60 IKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASF 119
++ + S VL D I KQV+++F D NL D+++ I K+++G+V IS++ SF
Sbjct: 23 VEKKKRSRVKQVLAD-----IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSF 77
Query: 120 RKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDH 179
K+K+LT + I ALR S+++ + G +++R PL +D TV VE LP++
Sbjct: 78 NKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLG-ERPKDEDERTVYVELLPKNV 136
Query: 180 SVENMQRIFAEAGKIKSICI 199
+ ++R+F + G + I I
Sbjct: 137 NHSWIERVFGKCGNVVYISI 156
>UNIPROTKB|E1BVY8 [details] [associations]
symbol:LOC420093 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00510000048191 EMBL:AADN02072211 IPI:IPI00821190
Ensembl:ENSGALT00000041247 Uniprot:E1BVY8
Length = 173
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 40/83 (48%), Positives = 57/83 (68%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L +RI+ QVE+Y SDENL D +++ ++KNK GFV I ++ SF+K+K LTR+ + A
Sbjct: 77 LIRRIVSQVEFYLSDENLAKDAFLLKHVQKNKLGFVSIKLLTSFKKVKYLTRDWRLTLYA 136
Query: 136 LRESSLLVVSSNGKKVKRLNPLP 158
LR S LL V+ G KV+R P+P
Sbjct: 137 LRFSKLLEVNQEGTKVRRRVPIP 159
>ZFIN|ZDB-GENE-030131-6896 [details] [associations]
symbol:larp7 "La ribonucleoprotein domain family,
member 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6896 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
EMBL:BC049455 IPI:IPI00509628 RefSeq:NP_956224.1 UniGene:Dr.29131
HSSP:Q7YZ92 ProteinModelPortal:Q7ZWE3 STRING:Q7ZWE3 PRIDE:Q7ZWE3
GeneID:334956 KEGG:dre:334956 CTD:51574 HOGENOM:HOG000113284
HOVERGEN:HBG081891 InParanoid:Q7ZWE3 KO:K15191 OrthoDB:EOG4TXBS0
NextBio:20810607 ArrayExpress:Q7ZWE3 InterPro:IPR014886
Pfam:PF08777 Uniprot:Q7ZWE3
Length = 555
Score = 203 (76.5 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 44/144 (30%), Positives = 82/144 (56%)
Query: 56 CEDPIKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISV 115
C D + +N L + KQVE++F D NL D++M ++I ++++G++ I+V
Sbjct: 22 CADLSEKKDNEKKKRSRVKQLLSDVKKQVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAV 81
Query: 116 IASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENL 175
+ +F ++K LT + I AL+ S+++ V+ G +++R PL T +D TV VE L
Sbjct: 82 LTTFNRMKNLTADVKLIARALKNSTIVEVNDEGTRIRRKEPLGETP-KDVDSRTVYVELL 140
Query: 176 PEDHSVENMQRIFAEAGKIKSICI 199
P+ + ++R+F++ G + I I
Sbjct: 141 PKTVTHIWLERVFSKCGHVVYISI 164
>CGD|CAL0004304 [details] [associations]
symbol:orf19.2795 species:5476 "Candida albicans" [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000049 "tRNA binding" evidence=IEA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IEA] [GO:0034307
"regulation of ascospore formation" evidence=IEA] [GO:0042779 "tRNA
3'-trailer cleavage" evidence=IEA] InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 CGD:CAL0004304 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 EMBL:AACQ01000185 RefSeq:XP_711737.1
ProteinModelPortal:Q59PU8 STRING:Q59PU8 GeneID:3646665
KEGG:cal:CaO19.2795 Uniprot:Q59PU8
Length = 324
Score = 196 (74.1 bits), Expect = 2.2e-15, P = 2.2e-15
Identities = 48/146 (32%), Positives = 87/146 (59%)
Query: 74 DDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIV 133
+D +++ KQVE+YFSD NL TDK++ + N +G+V + I +F ++++ R ++
Sbjct: 9 EDFDEKVRKQVEFYFSDSNLQTDKFLWKIYESN-DGWVELKTILTFGRMRQY-RPEDKVI 66
Query: 134 AALRESSLLVVSSNGKKVKRLNPLP-VTEVRDP-KLFTVLVENLPEDHS---VENM--QR 186
+AL+ES LV+S+N ++R +P+ EV++ K T+ +E P+D S VEN ++
Sbjct: 67 SALKESKKLVLSANNDMIRRKDPIKDFNEVKNTRKRNTIHIEGFPKDLSQDDVENWVNEK 126
Query: 187 IFAEAGKIKSIC-IRDPNVVEESKKK 211
+ + K K +C IR + +KK+
Sbjct: 127 VIVQLPKEKEVCSIR--RIKSRAKKE 150
>ZFIN|ZDB-GENE-030131-6403 [details] [associations]
symbol:larp6 "La ribonucleoprotein domain family,
member 6" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001756 "somitogenesis" evidence=IMP]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302
ZFIN:ZDB-GENE-030131-6403 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0001756 GO:GO:0030529
InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 CTD:55323 HOGENOM:HOG000010108
HOVERGEN:HBG070244 OMA:TSGGENE EMBL:BC056595 IPI:IPI00487082
RefSeq:NP_956197.1 UniGene:Dr.6975 ProteinModelPortal:Q6PHD4
GeneID:334471 KEGG:dre:334471 InParanoid:Q6PHD4 NextBio:20810417
ArrayExpress:Q6PHD4 Uniprot:Q6PHD4
Length = 485
Score = 201 (75.8 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 37/85 (43%), Positives = 60/85 (70%)
Query: 75 DLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVA 134
+L Q+++ Q+EYY SDENL D +++ +R+NK GFV + ++ SF+K+K LTR+
Sbjct: 77 ELIQKLVAQIEYYLSDENLEHDAFLLKHVRRNKLGFVSVKLLTSFKKVKHLTRDWRTTAY 136
Query: 135 ALRESSLLVVSSNGKKVKRLNPLPV 159
ALR S+LL ++ G+KV+R + +PV
Sbjct: 137 ALRHSNLLELNDEGRKVRRRSTVPV 161
>MGI|MGI:107634 [details] [associations]
symbol:Larp7 "La ribonucleoprotein domain family, member 7"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0035562 "negative regulation of chromatin binding"
evidence=IGI] [GO:0036093 "germ cell proliferation" evidence=IMP]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=IMP] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107634 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 CTD:51574
HOVERGEN:HBG081891 KO:K15191 OrthoDB:EOG4TXBS0 InterPro:IPR014886
Pfam:PF08777 ChiTaRS:LARP7 EMBL:AC113952 EMBL:BC020127
EMBL:BC023165 EMBL:BC029178 EMBL:AK012726 EMBL:AK012772
EMBL:AK015041 EMBL:AK162147 IPI:IPI00340860 IPI:IPI00831552
RefSeq:NP_613059.2 UniGene:Mm.291032 ProteinModelPortal:Q05CL8
SMR:Q05CL8 IntAct:Q05CL8 STRING:Q05CL8 PhosphoSite:Q05CL8
PaxDb:Q05CL8 PRIDE:Q05CL8 DNASU:28036 Ensembl:ENSMUST00000029588
GeneID:28036 KEGG:mmu:28036 UCSC:uc008rhd.1
GeneTree:ENSGT00530000063464 InParanoid:Q05CL8 OMA:NNPPEDA
NextBio:306558 Bgee:Q05CL8 CleanEx:MM_LARP7 Genevestigator:Q05CL8
Uniprot:Q05CL8
Length = 570
Score = 202 (76.2 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 43/120 (35%), Positives = 74/120 (61%)
Query: 80 IIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES 139
I KQV+++F D NL DK++ I K+++G+V IS++ SF K+K+LT + I AL+ S
Sbjct: 32 IAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSS 91
Query: 140 SLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICI 199
S++ + G +++R PL +D + TV VE LP++ + ++R+F + G + I I
Sbjct: 92 SVVELDLEGTRIRRKKPLG-ERPKDEEERTVYVELLPKNVTHSWIERVFGKCGNVVYISI 150
>FB|FBgn0033936 [details] [associations]
symbol:CG17386 species:7227 "Drosophila melanogaster"
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR012677
EMBL:AE013599 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 InterPro:IPR024642 Pfam:PF12901
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
eggNOG:NOG239004 GeneTree:ENSGT00510000048191 EMBL:BT044172
RefSeq:NP_610964.1 UniGene:Dm.24512 SMR:A1Z9R1
EnsemblMetazoa:FBtr0087488 GeneID:36605 KEGG:dme:Dmel_CG17386
UCSC:CG17386-RA FlyBase:FBgn0033936 InParanoid:A1Z9R1 OMA:RTIVACD
OrthoDB:EOG4D51CP GenomeRNAi:36605 NextBio:799463 Uniprot:A1Z9R1
Length = 867
Score = 202 (76.2 bits), Expect = 5.2e-15, P = 5.2e-15
Identities = 46/141 (32%), Positives = 87/141 (61%)
Query: 69 PAVL-TDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTR 127
P+++ +++L I VE+YFS+E++ D +++ +R+NKEGFV + +++SF+++++LTR
Sbjct: 273 PSLIPSEELAAEITDAVEFYFSNESILKDAFLLKHVRRNKEGFVSLKLVSSFKRVRQLTR 332
Query: 128 NHAWIV---AALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDH-SVEN 183
W V A R+S + ++ G KV+R+ PLP + P T++ +LP D ++E
Sbjct: 333 E--WKVVGDAVRRKSRKIELNDVGTKVRRIEPLPSFDETMPSR-TIVACDLPLDKLTIEK 389
Query: 184 MQRIFAEAGKIKSICIRDPNV 204
+ +F+ G+I I I P +
Sbjct: 390 VSDLFSPCGEIALIRILKPGM 410
>RGD|1592474 [details] [associations]
symbol:Larp7 "La ribonucleoprotein domain family, member 7"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0035562
"negative regulation of chromatin binding" evidence=ISO]
[GO:0036093 "germ cell proliferation" evidence=ISO] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 RGD:1592474 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
HSSP:Q7YZ92 CTD:51574 HOVERGEN:HBG081891 KO:K15191
OrthoDB:EOG4TXBS0 InterPro:IPR014886 Pfam:PF08777 EMBL:BC083898
IPI:IPI00389960 RefSeq:NP_001037755.2 UniGene:Rn.79854
ProteinModelPortal:Q5XI01 STRING:Q5XI01 PhosphoSite:Q5XI01
PRIDE:Q5XI01 GeneID:686883 KEGG:rno:686883 NextBio:732906
ArrayExpress:Q5XI01 Genevestigator:Q5XI01 Uniprot:Q5XI01
Length = 571
Score = 199 (75.1 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 42/120 (35%), Positives = 74/120 (61%)
Query: 80 IIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES 139
I KQV+++F D NL D+++ I K+++G+V IS++ SF K+K+LT + I AL+ S
Sbjct: 33 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSS 92
Query: 140 SLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICI 199
S++ + G +++R PL +D + TV VE LP++ + ++R+F + G + I I
Sbjct: 93 SVVELDLEGTRIRRKKPLG-ERPKDEEERTVYVELLPKNVTHSWIERVFGKCGNVVYISI 151
>UNIPROTKB|Q5XI01 [details] [associations]
symbol:Larp7 "La-related protein 7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
RGD:1592474 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
HSSP:Q7YZ92 CTD:51574 HOVERGEN:HBG081891 KO:K15191
OrthoDB:EOG4TXBS0 InterPro:IPR014886 Pfam:PF08777 EMBL:BC083898
IPI:IPI00389960 RefSeq:NP_001037755.2 UniGene:Rn.79854
ProteinModelPortal:Q5XI01 STRING:Q5XI01 PhosphoSite:Q5XI01
PRIDE:Q5XI01 GeneID:686883 KEGG:rno:686883 NextBio:732906
ArrayExpress:Q5XI01 Genevestigator:Q5XI01 Uniprot:Q5XI01
Length = 571
Score = 199 (75.1 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 42/120 (35%), Positives = 74/120 (61%)
Query: 80 IIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES 139
I KQV+++F D NL D+++ I K+++G+V IS++ SF K+K+LT + I AL+ S
Sbjct: 33 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSS 92
Query: 140 SLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICI 199
S++ + G +++R PL +D + TV VE LP++ + ++R+F + G + I I
Sbjct: 93 SVVELDLEGTRIRRKKPLG-ERPKDEEERTVYVELLPKNVTHSWIERVFGKCGNVVYISI 151
>UNIPROTKB|F1MR14 [details] [associations]
symbol:F1MR14 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:DAAA02016483 EMBL:DAAA02016480 EMBL:DAAA02016481
EMBL:DAAA02016482 IPI:IPI00691372 Ensembl:ENSBTAT00000012693
ArrayExpress:F1MR14 Uniprot:F1MR14
Length = 578
Score = 198 (74.8 bits), Expect = 7.1e-15, P = 7.1e-15
Identities = 41/120 (34%), Positives = 74/120 (61%)
Query: 80 IIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES 139
I+KQV+++F D NL D+++ I K+++G+V IS++ SF K+K+LT + I AL+ S
Sbjct: 36 IVKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSS 95
Query: 140 SLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICI 199
+++ + G +++R PL +D TV VE LP++ + ++R+F + G + I I
Sbjct: 96 AVVELDLEGTRIRRKKPLG-ERPKDEDERTVYVELLPKNVNHSWIERVFGKCGNVVYISI 154
>UNIPROTKB|E2QW27 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:AAEX03016829 ProteinModelPortal:E2QW27
Ensembl:ENSCAFT00000018607 Uniprot:E2QW27
Length = 582
Score = 198 (74.8 bits), Expect = 7.2e-15, P = 7.2e-15
Identities = 46/140 (32%), Positives = 80/140 (57%)
Query: 60 IKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASF 119
++ + S VL D I KQV+++F D NL D+++ I K+++G+V IS++ SF
Sbjct: 22 VEKKKRSRVKQVLAD-----IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSF 76
Query: 120 RKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDH 179
K+K+LT + I AL+ SS++ + G +++R PL +D TV VE LP++
Sbjct: 77 NKMKKLTTDGKLIARALKSSSVVELDLEGTRIRRKKPLG-ERPKDEDERTVYVELLPKNV 135
Query: 180 SVENMQRIFAEAGKIKSICI 199
+ ++R+F + G + I I
Sbjct: 136 NHSWIERVFGKCGNVVYISI 155
>UNIPROTKB|Q4G0J3 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 EMBL:CH471057
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 HSSP:P05455 CTD:51574 HOGENOM:HOG000113284
HOVERGEN:HBG081891 KO:K15191 OrthoDB:EOG4TXBS0 InterPro:IPR014886
Pfam:PF08777 EMBL:EU667388 EMBL:AF068284 EMBL:BC066945
EMBL:BC107709 EMBL:AL049996 IPI:IPI00294742 IPI:IPI00395536
PIR:T08692 RefSeq:NP_001253968.1 RefSeq:NP_056269.1
RefSeq:NP_057732.2 UniGene:Hs.713663 ProteinModelPortal:Q4G0J3
SMR:Q4G0J3 DIP:DIP-47624N IntAct:Q4G0J3 MINT:MINT-4540675
STRING:Q4G0J3 PhosphoSite:Q4G0J3 DMDM:121945944 PaxDb:Q4G0J3
PRIDE:Q4G0J3 Ensembl:ENST00000324052 Ensembl:ENST00000344442
Ensembl:ENST00000509061 GeneID:51574 KEGG:hsa:51574 UCSC:uc003iay.3
GeneCards:GC04P113559 HGNC:HGNC:24912 HPA:HPA026842 HPA:HPA027930
MIM:612026 neXtProt:NX_Q4G0J3 PharmGKB:PA145148525
InParanoid:Q4G0J3 ChiTaRS:LARP7 GenomeRNAi:51574 NextBio:55403
ArrayExpress:Q4G0J3 Bgee:Q4G0J3 CleanEx:HS_LARP7
Genevestigator:Q4G0J3 Uniprot:Q4G0J3
Length = 582
Score = 198 (74.8 bits), Expect = 7.2e-15, P = 7.2e-15
Identities = 46/140 (32%), Positives = 80/140 (57%)
Query: 60 IKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASF 119
++ + S VL D I KQV+++F D NL D+++ I K+++G+V IS++ SF
Sbjct: 23 VEKKKRSRVKQVLAD-----IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSF 77
Query: 120 RKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDH 179
K+K+LT + I ALR S+++ + G +++R PL +D TV VE LP++
Sbjct: 78 NKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLG-ERPKDEDERTVYVELLPKNV 136
Query: 180 SVENMQRIFAEAGKIKSICI 199
+ ++R+F + G + I I
Sbjct: 137 NHSWIERVFGKCGNVVYISI 156
>UNIPROTKB|I3LNK9 [details] [associations]
symbol:I3LNK9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464
Ensembl:ENSSSCT00000031777 OMA:NASEECE Uniprot:I3LNK9
Length = 580
Score = 197 (74.4 bits), Expect = 9.2e-15, P = 9.2e-15
Identities = 45/140 (32%), Positives = 80/140 (57%)
Query: 60 IKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASF 119
++ + S VL D I KQV+++F D NL D+++ I K+++G+V IS++ SF
Sbjct: 23 VEKKKRSRVKQVLAD-----IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSF 77
Query: 120 RKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDH 179
K+K+LT + I AL+ S+++ + G +++R PL +D TV VE LP++
Sbjct: 78 NKMKKLTTDRKLIARALKSSAVVELDLEGTRIRRKKPLG-ERPKDEDERTVYVELLPKNV 136
Query: 180 SVENMQRIFAEAGKIKSICI 199
+ ++R+F + G + I I
Sbjct: 137 NHSWIERVFGKCGNVVYISI 156
>UNIPROTKB|F1S150 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA EMBL:FP236150
Ensembl:ENSSSCT00000009986 Uniprot:F1S150
Length = 582
Score = 197 (74.4 bits), Expect = 9.2e-15, P = 9.2e-15
Identities = 45/140 (32%), Positives = 80/140 (57%)
Query: 60 IKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASF 119
++ + S VL D I KQV+++F D NL D+++ I K+++G+V IS++ SF
Sbjct: 23 VEKKKRSRVKQVLAD-----IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSF 77
Query: 120 RKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDH 179
K+K+LT + I AL+ S+++ + G +++R PL +D TV VE LP++
Sbjct: 78 NKMKKLTTDRKLIARALKSSAVVELDLEGTRIRRKKPLG-ERPKDEDERTVYVELLPKNV 136
Query: 180 SVENMQRIFAEAGKIKSICI 199
+ ++R+F + G + I I
Sbjct: 137 NHSWIERVFGKCGNVVYISI 156
>UNIPROTKB|E7ERC4 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00916922
ProteinModelPortal:E7ERC4 SMR:E7ERC4 PRIDE:E7ERC4
Ensembl:ENST00000422006 ArrayExpress:E7ERC4 Bgee:E7ERC4
Uniprot:E7ERC4
Length = 184
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 45/132 (34%), Positives = 79/132 (59%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L+ +I Q+EYYF D NLP DK++ I+ + EG+VP+ ++ F +L RLT + IV A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 136 LRESS--LLVVSSNGKKVKRL--NPLP-VTEV--RDPKLFTVLVENLPEDHSVENMQRIF 188
L +S L+ +S + K++R PLP VT+ D K +V ++ P D ++++++
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL 131
Query: 189 AEAGKIKSICIR 200
+ G++ +I +R
Sbjct: 132 EDKGQVLNIQMR 143
>UNIPROTKB|E1BQG3 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:AADN02009328 IPI:IPI00680045 Ensembl:ENSGALT00000019679
ArrayExpress:E1BQG3 Uniprot:E1BQG3
Length = 602
Score = 192 (72.6 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 40/120 (33%), Positives = 73/120 (60%)
Query: 80 IIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES 139
I KQV+++F D NL D+++ I K+++G+V IS++ SF K+K+LT + I A++ S
Sbjct: 40 IAKQVDFWFGDVNLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARAVKSS 99
Query: 140 SLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICI 199
S++ + G +++R PL +D TV VE LP++ + ++R+F + G + + I
Sbjct: 100 SVVELDLEGTRIRRRRPLG-ERPKDVDSRTVYVELLPKNVNHSWIERVFGKCGNVVYVSI 158
>UNIPROTKB|F1P301 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:AADN02020271 IPI:IPI01017187
Ensembl:ENSGALT00000038515 ArrayExpress:F1P301 Uniprot:F1P301
Length = 205
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 41/132 (31%), Positives = 80/132 (60%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L+ +I +Q+EYYF + NLP DK++ I+ + +G+VP+ V+ F +L RL+++ IV A
Sbjct: 13 LESKICQQIEYYFGNHNLPRDKFLKEQIKLD-DGWVPLEVMIKFNRLSRLSKDFGVIVEA 71
Query: 136 LRESS--LLVVSSNGKKVKRLNPLPVTEVRDP-----KLFTVLVENLPEDHSVENMQRIF 188
LR+S L+ ++ + K++R P+ E+ D K +V V+ P D ++++++
Sbjct: 72 LRKSKTGLMEINEDKTKIRRSPNKPLPELNDQYKAAIKNRSVYVKGFPLDATLDDIKEWL 131
Query: 189 AEAGKIKSICIR 200
+ G +++I +R
Sbjct: 132 EDKGPVENIQMR 143
>POMBASE|SPAC57A10.10c [details] [associations]
symbol:sla1 "La protein homolog" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006386 "termination of RNA
polymerase III transcription" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0034307 "regulation
of ascospore formation" evidence=IMP] [GO:0034414 "tRNA 3'-trailer
cleavage, endonucleolytic" evidence=IMP] [GO:0042779 "tRNA
3'-trailer cleavage" evidence=IGI] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC57A10.10c GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0030529 GO:GO:0031137 InterPro:IPR006630
PROSITE:PS50961 EMBL:AF022949 EMBL:AB011371 PIR:T38937 PIR:T43542
RefSeq:NP_593315.1 ProteinModelPortal:P87058 STRING:P87058
PRIDE:P87058 EnsemblFungi:SPAC57A10.10c.1 GeneID:2541530
KEGG:spo:SPAC57A10.10c eggNOG:COG5193 HOGENOM:HOG000113277
KO:K11090 OMA:FFEENAG OrthoDB:EOG43JGF6 NextBio:20802627
GO:GO:0034307 GO:GO:0006386 GO:GO:0034414 Pfam:PF05383
SMART:SM00715 Uniprot:P87058
Length = 298
Score = 182 (69.1 bits), Expect = 5.8e-14, P = 5.8e-14
Identities = 47/125 (37%), Positives = 76/125 (60%)
Query: 80 IIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES 139
++KQVE+YFSD NLP DK++ +KN +G+VPI IA+F++++R A IV ALR+S
Sbjct: 67 VLKQVEFYFSDTNLPHDKFLWTTSQKN-DGWVPIQTIANFKRMRRFQPLEA-IVNALRKS 124
Query: 140 -SLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPE--DHSVENMQRIFAE-AGKIK 195
LL V G+KV+R+ PL + + +V + + D + +++ F E AG I
Sbjct: 125 PELLEVDEAGEKVRRMIPLVRVDNKSVMERSVYCKGFGDEKDDTQIALEKFFEENAGPIS 184
Query: 196 SICIR 200
++ +R
Sbjct: 185 AVRMR 189
>UNIPROTKB|E9PFH8 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00916802
ProteinModelPortal:E9PFH8 SMR:E9PFH8 PRIDE:E9PFH8
Ensembl:ENST00000409005 ArrayExpress:E9PFH8 Bgee:E9PFH8
Uniprot:E9PFH8
Length = 361
Score = 184 (69.8 bits), Expect = 7.8e-14, P = 7.8e-14
Identities = 45/132 (34%), Positives = 79/132 (59%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L+ +I Q+EYYF D NLP DK++ I+ + EG+VP+ ++ F +L RLT + IV A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 136 LRESS--LLVVSSNGKKVKRL--NPLP-VTEV--RDPKLFTVLVENLPEDHSVENMQRIF 188
L +S L+ +S + K++R PLP VT+ D K +V ++ P D ++++++
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL 131
Query: 189 AEAGKIKSICIR 200
+ G++ +I +R
Sbjct: 132 EDKGQVLNIQMR 143
>UNIPROTKB|Q9BRS8 [details] [associations]
symbol:LARP6 "La-related protein 6" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302
PROSITE:PS50102 GO:GO:0005634 GO:GO:0005794 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 EMBL:AF443828 EMBL:AF443829
EMBL:AK002058 EMBL:AL833876 EMBL:AC009269 EMBL:AC090868
EMBL:BC006082 EMBL:BC009446 EMBL:BC014018 EMBL:BC039153
IPI:IPI00377127 IPI:IPI00414661 RefSeq:NP_060827.2
RefSeq:NP_932062.1 UniGene:Hs.416755 HSSP:P05455
ProteinModelPortal:Q9BRS8 SMR:Q9BRS8 STRING:Q9BRS8
PhosphoSite:Q9BRS8 DMDM:74752287 PaxDb:Q9BRS8 PRIDE:Q9BRS8
Ensembl:ENST00000299213 Ensembl:ENST00000344870 GeneID:55323
KEGG:hsa:55323 UCSC:uc002ass.3 CTD:55323 GeneCards:GC15M071123
HGNC:HGNC:24012 HPA:HPA020338 MIM:611300 neXtProt:NX_Q9BRS8
PharmGKB:PA142671568 eggNOG:NOG239004 HOGENOM:HOG000010108
HOVERGEN:HBG070244 InParanoid:Q9BRS8 OMA:TSGGENE OrthoDB:EOG4NGGMP
ChiTaRS:LARP6 GenomeRNAi:55323 NextBio:59586 ArrayExpress:Q9BRS8
Bgee:Q9BRS8 CleanEx:HS_LARP6 Genevestigator:Q9BRS8 Uniprot:Q9BRS8
Length = 491
Score = 187 (70.9 bits), Expect = 8.0e-14, P = 8.0e-14
Identities = 36/103 (34%), Positives = 67/103 (65%)
Query: 57 EDPIKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVI 116
E+ +D E P ++L ++++ Q+E+YFSDENL D +++ +R+NK G+V + ++
Sbjct: 75 ENEREDLEQEWKPP--DEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLL 132
Query: 117 ASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPV 159
SF+K+K LTR+ AL+ S +L ++ + +KV+R P+P+
Sbjct: 133 TSFKKVKHLTRDWRTTAHALKYSVVLELNEDHRKVRRTTPVPL 175
>UNIPROTKB|F1MAB1 [details] [associations]
symbol:Ssb "Lupus La protein homolog" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302 RGD:620804
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 IPI:IPI00196913 PRIDE:F1MAB1
Ensembl:ENSRNOT00000010625 ArrayExpress:F1MAB1 Uniprot:F1MAB1
Length = 381
Score = 184 (69.8 bits), Expect = 9.2e-14, P = 9.2e-14
Identities = 47/132 (35%), Positives = 80/132 (60%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L+ +I Q+EYYF D NLP DK++ I+ + EG+VP+ + F +L RLT + IV A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 136 LRES--SLLVVSSNGKKVKRL--NPLP-VTEV--RDPKLFTVLVENLPEDHSVENMQRIF 188
L +S +L+ VS++ K++R PLP VT+ D K +V ++ P D ++++++
Sbjct: 72 LSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL 131
Query: 189 AEAGKIKSICIR 200
+ G+I +I +R
Sbjct: 132 DDKGQILNIQMR 143
>UNIPROTKB|P10881 [details] [associations]
symbol:SSB "Lupus La protein homolog" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
EMBL:X13698 EMBL:BC103234 IPI:IPI00687044 PIR:S03849
RefSeq:NP_788838.1 UniGene:Bt.15513 ProteinModelPortal:P10881
SMR:P10881 STRING:P10881 PRIDE:P10881 Ensembl:ENSBTAT00000011484
GeneID:338071 KEGG:bta:338071 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS NextBio:20812521 Uniprot:P10881
Length = 404
Score = 184 (69.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 45/132 (34%), Positives = 79/132 (59%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L+ +I Q+EYYF D NLP DK++ I+ + EG+VP+ ++ F +L RLT + IV A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 136 LRESS--LLVVSSNGKKVKRL--NPLP-VTEV--RDPKLFTVLVENLPEDHSVENMQRIF 188
L +S L+ +S + K++R PLP VT+ D K +V ++ P D ++++++
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDAALDDIKEWL 131
Query: 189 AEAGKIKSICIR 200
+ G++ +I +R
Sbjct: 132 EDKGQVLNIQMR 143
>UNIPROTKB|E2RH09 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 KO:K11090 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
GeneTree:ENSGT00530000063464 CTD:6741 OMA:ENAEMKS EMBL:AAEX03017743
RefSeq:XP_535952.2 ProteinModelPortal:E2RH09
Ensembl:ENSCAFT00000038572 GeneID:478787 KEGG:cfa:478787
Uniprot:E2RH09
Length = 406
Score = 184 (69.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 45/132 (34%), Positives = 79/132 (59%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L+ +I Q+EYYF D NLP DK++ I+ + EG+VP+ ++ F +L RLT + IV A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 136 LRESS--LLVVSSNGKKVKRL--NPLP-VTEV--RDPKLFTVLVENLPEDHSVENMQRIF 188
L +S L+ +S + K++R PLP VT+ D K +V ++ P D ++++++
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL 131
Query: 189 AEAGKIKSICIR 200
+ G++ +I +R
Sbjct: 132 EDKGQVLNIQMR 143
>UNIPROTKB|P05455 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000049 "tRNA binding" evidence=TAS] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0006400 "tRNA modification"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:CH471058 GO:GO:0030529 GO:GO:0006400 GO:GO:0000049
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
Pfam:PF05383 SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 CTD:6741
HOGENOM:HOG000006947 HOVERGEN:HBG001407 OMA:ENAEMKS EMBL:X13697
EMBL:J04205 EMBL:BT009862 EMBL:AB451228 EMBL:AC009967 EMBL:BC001289
EMBL:BC020818 EMBL:M20328 IPI:IPI00009032 PIR:A31888
RefSeq:NP_003133.1 UniGene:Hs.632535 PDB:1OWX PDB:1S79 PDB:1S7A
PDB:1YTY PDB:1ZH5 PDB:2VOD PDB:2VON PDB:2VOO PDB:2VOP PDBsum:1OWX
PDBsum:1S79 PDBsum:1S7A PDBsum:1YTY PDBsum:1ZH5 PDBsum:2VOD
PDBsum:2VON PDBsum:2VOO PDBsum:2VOP DisProt:DP00229
ProteinModelPortal:P05455 SMR:P05455 DIP:DIP-29750N IntAct:P05455
MINT:MINT-5002383 STRING:P05455 PhosphoSite:P05455 DMDM:125985
PaxDb:P05455 PeptideAtlas:P05455 PRIDE:P05455 DNASU:6741
Ensembl:ENST00000260956 Ensembl:ENST00000409333 GeneID:6741
KEGG:hsa:6741 UCSC:uc002ufk.3 GeneCards:GC02P170619 HGNC:HGNC:11316
HPA:CAB004643 HPA:HPA012385 HPA:HPA017287 MIM:109090
neXtProt:NX_P05455 PharmGKB:PA36140 InParanoid:P05455
OrthoDB:EOG4C2HB3 PhylomeDB:P05455 EvolutionaryTrace:P05455
GenomeRNAi:6741 NextBio:26296 PMAP-CutDB:P05455 ArrayExpress:P05455
Bgee:P05455 CleanEx:HS_SSB Genevestigator:P05455
GermOnline:ENSG00000138385 GO:GO:0008334 Uniprot:P05455
Length = 408
Score = 184 (69.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 45/132 (34%), Positives = 79/132 (59%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L+ +I Q+EYYF D NLP DK++ I+ + EG+VP+ ++ F +L RLT + IV A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 136 LRESS--LLVVSSNGKKVKRL--NPLP-VTEV--RDPKLFTVLVENLPEDHSVENMQRIF 188
L +S L+ +S + K++R PLP VT+ D K +V ++ P D ++++++
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL 131
Query: 189 AEAGKIKSICIR 200
+ G++ +I +R
Sbjct: 132 EDKGQVLNIQMR 143
>RGD|620804 [details] [associations]
symbol:Ssb "Sjogren syndrome antigen B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IMP] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 RGD:620804 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0030529 GO:GO:0008033
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OrthoDB:EOG4C2HB3 EMBL:X67859 IPI:IPI00212219
PIR:JC1494 UniGene:Rn.24494 ProteinModelPortal:P38656 SMR:P38656
DIP:DIP-46500N STRING:P38656 PhosphoSite:P38656 PRIDE:P38656
UCSC:RGD:620804 InParanoid:P38656 ArrayExpress:P38656
Genevestigator:P38656 GermOnline:ENSRNOG00000007998 Uniprot:P38656
Length = 415
Score = 184 (69.8 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 47/132 (35%), Positives = 80/132 (60%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L+ +I Q+EYYF D NLP DK++ I+ + EG+VP+ + F +L RLT + IV A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 136 LRES--SLLVVSSNGKKVKRL--NPLP-VTEV--RDPKLFTVLVENLPEDHSVENMQRIF 188
L +S +L+ VS++ K++R PLP VT+ D K +V ++ P D ++++++
Sbjct: 72 LSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL 131
Query: 189 AEAGKIKSICIR 200
+ G+I +I +R
Sbjct: 132 DDKGQILNIQMR 143
>UNIPROTKB|Q66HM7 [details] [associations]
symbol:Ssb "Sjogren syndrome antigen B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
RGD:620804 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 EMBL:CH473949 InterPro:IPR006630 PROSITE:PS50961
KO:K11090 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 CTD:6741
HOVERGEN:HBG001407 OMA:ENAEMKS UniGene:Rn.24494 EMBL:BC081780
IPI:IPI00471902 RefSeq:NP_112381.2 SMR:Q66HM7 STRING:Q66HM7
Ensembl:ENSRNOT00000011174 GeneID:81783 KEGG:rno:81783
InParanoid:Q66HM7 NextBio:615635 Genevestigator:Q66HM7
Uniprot:Q66HM7
Length = 415
Score = 184 (69.8 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 47/132 (35%), Positives = 80/132 (60%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L+ +I Q+EYYF D NLP DK++ I+ + EG+VP+ + F +L RLT + IV A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 136 LRES--SLLVVSSNGKKVKRL--NPLP-VTEV--RDPKLFTVLVENLPEDHSVENMQRIF 188
L +S +L+ VS++ K++R PLP VT+ D K +V ++ P D ++++++
Sbjct: 72 LSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL 131
Query: 189 AEAGKIKSICIR 200
+ G+I +I +R
Sbjct: 132 DDKGQILNIQMR 143
>UNIPROTKB|F1MBD0 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 GO:GO:0005634 GO:GO:0005794 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642
Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 OMA:TSGGENE GeneTree:ENSGT00510000048191
EMBL:DAAA02027971 IPI:IPI00826749 Ensembl:ENSBTAT00000005109
ArrayExpress:F1MBD0 Uniprot:F1MBD0
Length = 425
Score = 184 (69.8 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 32/86 (37%), Positives = 60/86 (69%)
Query: 74 DDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIV 133
++L ++++ Q+E+YFSDENL D +++ +R+NK G+V + ++ SF+K+K LTR+
Sbjct: 23 EELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTA 82
Query: 134 AALRESSLLVVSSNGKKVKRLNPLPV 159
AL+ S L ++ + +KV+R P+P+
Sbjct: 83 HALKYSVTLELNEDHRKVRRTTPVPL 108
>UNIPROTKB|F1SIT3 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 GO:GO:0005634 GO:GO:0005794 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642
Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 CTD:55323 OMA:TSGGENE GeneTree:ENSGT00510000048191
EMBL:CU074280 EMBL:CU302364 RefSeq:XP_003121812.3
Ensembl:ENSSSCT00000005486 GeneID:100522415 KEGG:ssc:100522415
Uniprot:F1SIT3
Length = 492
Score = 185 (70.2 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 36/103 (34%), Positives = 66/103 (64%)
Query: 57 EDPIKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVI 116
E+ +D E P ++L ++++ Q+E+YFSDENL D +++ +R+NK G+V + ++
Sbjct: 75 ENEREDLEQEWQPP--DEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLL 132
Query: 117 ASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPV 159
SF+K+K LTR+ AL+ S L ++ + +KV+R P+P+
Sbjct: 133 TSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPVPL 175
>MGI|MGI:98423 [details] [associations]
symbol:Ssb "Sjogren syndrome antigen B" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 MGI:MGI:98423 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS OrthoDB:EOG4C2HB3 EMBL:L00993
EMBL:BC003820 EMBL:Y07951 IPI:IPI00134300 RefSeq:NP_001103615.1
RefSeq:NP_033304.1 UniGene:Mm.10508 ProteinModelPortal:P32067
SMR:P32067 DIP:DIP-37706N IntAct:P32067 STRING:P32067
PhosphoSite:P32067 PaxDb:P32067 PRIDE:P32067
Ensembl:ENSMUST00000090852 Ensembl:ENSMUST00000166411 GeneID:20823
KEGG:mmu:20823 InParanoid:P32067 ChiTaRS:SSB NextBio:299565
Bgee:P32067 CleanEx:MM_SSB Genevestigator:P32067
GermOnline:ENSMUSG00000068882 Uniprot:P32067
Length = 415
Score = 183 (69.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 47/132 (35%), Positives = 79/132 (59%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L+ +I Q+EYYF D NLP DK++ I+ + EG+VP+ + F +L RLT + IV A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 136 LRESS--LLVVSSNGKKVKRL--NPLP-VTEV--RDPKLFTVLVENLPEDHSVENMQRIF 188
L +S L+ VS++ K++R PLP VT+ D K +V ++ P D ++++++
Sbjct: 72 LSKSKAKLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL 131
Query: 189 AEAGKIKSICIR 200
+ G+I +I +R
Sbjct: 132 DDKGQILNIQMR 143
>MGI|MGI:1914807 [details] [associations]
symbol:Larp6 "La ribonucleoprotein domain family, member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 PROSITE:PS50102 MGI:MGI:1914807 GO:GO:0005634
GO:GO:0005794 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HSSP:P05455 CTD:55323
eggNOG:NOG239004 HOGENOM:HOG000010108 HOVERGEN:HBG070244
OMA:TSGGENE OrthoDB:EOG4NGGMP EMBL:AK017372 EMBL:AK020966
EMBL:AK039614 EMBL:AK042616 EMBL:AK087521 EMBL:BC090615
IPI:IPI00309063 RefSeq:NP_080511.2 UniGene:Mm.44546
ProteinModelPortal:Q8BN59 SMR:Q8BN59 STRING:Q8BN59
PhosphoSite:Q8BN59 PaxDb:Q8BN59 PRIDE:Q8BN59
Ensembl:ENSMUST00000038407 GeneID:67557 KEGG:mmu:67557
UCSC:uc009pzh.1 GeneTree:ENSGT00510000048191 InParanoid:Q8BN59
NextBio:324917 Bgee:Q8BN59 CleanEx:MM_LARP6 Genevestigator:Q8BN59
Uniprot:Q8BN59
Length = 492
Score = 184 (69.8 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 32/86 (37%), Positives = 60/86 (69%)
Query: 74 DDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIV 133
++L ++++ Q+E+YFSDENL D +++ +R+NK G+V + ++ SF+K+K LTR+
Sbjct: 90 EELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTA 149
Query: 134 AALRESSLLVVSSNGKKVKRLNPLPV 159
AL+ S L ++ + +KV+R P+P+
Sbjct: 150 HALKYSVTLELNEDHRKVRRTTPVPL 175
>RGD|1308414 [details] [associations]
symbol:Larp6 "La ribonucleoprotein domain family, member 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005794 "Golgi apparatus"
evidence=IEA;ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 RGD:1308414 GO:GO:0005634
GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
EMBL:CH473975 InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 CTD:55323 OMA:TSGGENE
OrthoDB:EOG4NGGMP GeneTree:ENSGT00510000048191 IPI:IPI00370054
RefSeq:NP_001101624.1 UniGene:Rn.33750 Ensembl:ENSRNOT00000017147
GeneID:315731 KEGG:rno:315731 UCSC:RGD:1308414 NextBio:669749
Uniprot:D3ZCR5
Length = 492
Score = 184 (69.8 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 32/86 (37%), Positives = 60/86 (69%)
Query: 74 DDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIV 133
++L ++++ Q+E+YFSDENL D +++ +R+NK G+V + ++ SF+K+K LTR+
Sbjct: 90 EELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTA 149
Query: 134 AALRESSLLVVSSNGKKVKRLNPLPV 159
AL+ S L ++ + +KV+R P+P+
Sbjct: 150 HALKYSVTLELNEDHRKVRRTTPVPL 175
>UNIPROTKB|F1S1V1 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:ENAEMKS EMBL:CU466304
Ensembl:ENSSSCT00000017354 Uniprot:F1S1V1
Length = 402
Score = 182 (69.1 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 46/132 (34%), Positives = 79/132 (59%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L+ +I Q+EYYF D NLP DK++ I+ + EG+VP+ ++ F +L RLT + I+ A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIIEA 71
Query: 136 LRESS--LLVVSSNGKKVKRL--NPLP-VTEV--RDPKLFTVLVENLPEDHSVENMQRIF 188
L +S L+ +S + K++R PLP VT+ D K +V V+ P D ++++++
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDLKNRSVYVKGFPTDATLDDIKDWL 131
Query: 189 AEAGKIKSICIR 200
+ G+I +I +R
Sbjct: 132 EDKGEILNIQMR 143
>UNIPROTKB|F1NYE7 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:ENAEMKS
EMBL:AADN02020271 IPI:IPI00680677 Ensembl:ENSGALT00000033213
ArrayExpress:F1NYE7 Uniprot:F1NYE7
Length = 404
Score = 182 (69.1 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 41/132 (31%), Positives = 80/132 (60%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L+ +I +Q+EYYF + NLP DK++ I+ + +G+VP+ V+ F +L RL+++ IV A
Sbjct: 13 LESKICQQIEYYFGNHNLPRDKFLKEQIKLD-DGWVPLEVMIKFNRLSRLSKDFGVIVEA 71
Query: 136 LRESS--LLVVSSNGKKVKRLNPLPVTEVRDP-----KLFTVLVENLPEDHSVENMQRIF 188
LR+S L+ ++ + K++R P+ E+ D K +V V+ P D ++++++
Sbjct: 72 LRKSKTGLMEINEDKTKIRRSPNKPLPELNDQYKAAIKNRSVYVKGFPLDATLDDIKEWL 131
Query: 189 AEAGKIKSICIR 200
+ G +++I +R
Sbjct: 132 EDKGPVENIQMR 143
>UNIPROTKB|F1PKV9 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 GO:GO:0005634 GO:GO:0005794 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642
Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 OMA:TSGGENE GeneTree:ENSGT00510000048191
EMBL:AAEX03016265 Ensembl:ENSCAFT00000027928 Uniprot:F1PKV9
Length = 428
Score = 182 (69.1 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 32/85 (37%), Positives = 59/85 (69%)
Query: 75 DLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVA 134
+L ++++ Q+E+YFSDENL D +++ +R+NK G+V + ++ SF+K+K LTR+
Sbjct: 27 ELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAH 86
Query: 135 ALRESSLLVVSSNGKKVKRLNPLPV 159
AL+ S L ++ + +KV+R P+P+
Sbjct: 87 ALKYSVTLELNEDHRKVRRTTPVPL 111
>UNIPROTKB|Q5ZKS1 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 GeneTree:ENSGT00530000063464 HOGENOM:HOG000006947
OrthoDB:EOG4C2HB3 EMBL:AADN02020271 EMBL:AJ720013 IPI:IPI00599030
UniGene:Gga.42753 UniGene:Gga.53297 SMR:Q5ZKS1 STRING:Q5ZKS1
Ensembl:ENSGALT00000015751 HOVERGEN:HBG059895 InParanoid:Q5ZKS1
Uniprot:Q5ZKS1
Length = 137
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 39/126 (30%), Positives = 75/126 (59%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L+ +I +Q+EYYF + NLP DK++ I+ + +G+VP+ V+ F +L RL+++ IV A
Sbjct: 13 LESKICQQIEYYFGNHNLPRDKFLKEQIKLD-DGWVPLEVMIKFNRLSRLSKDFGVIVEA 71
Query: 136 LRESS--LLVVSSNGKKVKRLNPLPVTEVRDP-----KLFTVLVENLPEDHSVENMQRIF 188
LR+S L+ ++ + K++R P+ E+ D K +V V+ P D ++++++
Sbjct: 72 LRKSKTGLMEINEDKTKIRRSPNKPLPELNDQYKAAIKNRSVYVKGFPLDATLDDIKEWL 131
Query: 189 AEAGKI 194
+ G +
Sbjct: 132 EDKGPV 137
>ZFIN|ZDB-GENE-041008-244 [details] [associations]
symbol:zgc:162969 "zgc:162969" species:7955 "Danio
rerio" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 ZFIN:ZDB-GENE-041008-244
GO:GO:0005634 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723
GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642 Pfam:PF12901
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
HOVERGEN:HBG070244 GeneTree:ENSGT00510000048191 EMBL:CU062501
IPI:IPI00500994 UniGene:Dr.75982 Ensembl:ENSDART00000004483
OMA:YEYLEGA Uniprot:A8B8W4
Length = 471
Score = 179 (68.1 bits), Expect = 5.4e-13, P = 5.4e-13
Identities = 35/85 (41%), Positives = 56/85 (65%)
Query: 74 DDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIV 133
DD+ Q+I Q+E Y SDENL D +++ +++NK G+V + ++ SF+K++ LTR+ +
Sbjct: 59 DDVTQQIATQLENYLSDENLSDDAFLLKHVQRNKMGYVSLKLLTSFKKIRDLTRDWRTTL 118
Query: 134 AALRESSLLVVSSNGKKVKRLNPLP 158
AA R S L V+ G KV+R P+P
Sbjct: 119 AAARTSLQLEVNEMGTKVRRRTPVP 143
>ZFIN|ZDB-GENE-030131-223 [details] [associations]
symbol:ssb "Sjogren syndrome antigen B (autoantigen
La)" species:7955 "Danio rerio" [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-223 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
HSSP:P05455 InterPro:IPR014886 Pfam:PF08777
GeneTree:ENSGT00530000063464 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS OrthoDB:EOG4C2HB3 EMBL:CABZ01067486
EMBL:BC045392 IPI:IPI00506214 RefSeq:NP_955841.1 UniGene:Dr.3463
SMR:Q7ZTI0 STRING:Q7ZTI0 Ensembl:ENSDART00000041627 GeneID:321504
KEGG:dre:321504 InParanoid:Q7ZTI0 NextBio:20807405 Uniprot:Q7ZTI0
Length = 401
Score = 175 (66.7 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 41/132 (31%), Positives = 79/132 (59%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L++++ +Q+EYYF D NLP DK++ ++ + +G+VP+ + F +LK LT + IV +
Sbjct: 10 LEKKVAEQIEYYFGDHNLPRDKFLKEQLQLD-DGWVPLETMLKFNRLKSLTSEESVIVES 68
Query: 136 LRESS--LLVVSSNGKKVKR--LNPLPVT--EVRDP-KLFTVLVENLPEDHSVENMQRIF 188
L +S LL +S + K++R PLP E RD K ++ ++ P + ++++++
Sbjct: 69 LLKSKTGLLEISEDKTKIRRDPNKPLPENNEEYRDALKHKSIYMKGFPLETTLDDVKEWL 128
Query: 189 AEAGKIKSICIR 200
A+ G ++I +R
Sbjct: 129 ADKGTFENIYLR 140
>RGD|1592944 [details] [associations]
symbol:LOC680385 "similar to Sjogren syndrome antigen B"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
RGD:1592944 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
GeneTree:ENSGT00530000063464 OrthoDB:EOG4C2HB3 IPI:IPI00767397
RefSeq:XP_001058361.1 RefSeq:XP_002726506.1 PRIDE:D3ZLH9
Ensembl:ENSRNOT00000015427 GeneID:680385 KEGG:rno:680385
UCSC:RGD:1592944 OMA:ATESEKC NextBio:718589 Uniprot:D3ZLH9
Length = 402
Score = 173 (66.0 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 44/132 (33%), Positives = 76/132 (57%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L+ +I Q+EYYF D NLP DK++ I+ + EG+V + + F +L RLT + IV A
Sbjct: 13 LEAKICHQIEYYFGDFNLPQDKFLKEQIKLD-EGWVSLETMIKFNRLNRLTTDFNVIVQA 71
Query: 136 LRESS--LLVVSSNGKKVKRLNPLPVTEVRDP-----KLFTVLVENLPEDHSVENMQRIF 188
L +S L+ VS++ K++R P+ EV D K +V ++ P D ++++++
Sbjct: 72 LSKSKAKLMEVSADKTKIRRSPSRPLPEVMDEYKNDVKNRSVYIKGFPTDATLDDIKEWL 131
Query: 189 AEAGKIKSICIR 200
+ G+I +I +R
Sbjct: 132 DDKGQILNIQMR 143
>UNIPROTKB|E9PFL9 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00917205
ProteinModelPortal:E9PFL9 SMR:E9PFL9 PRIDE:E9PFL9
Ensembl:ENST00000413002 ArrayExpress:E9PFL9 Bgee:E9PFL9
Uniprot:E9PFL9
Length = 134
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 41/123 (33%), Positives = 69/123 (56%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L+ +I Q+EYYF D NLP DK++ I+ + EG+VP+ ++ F +L RLT + IV A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 136 LRESS--LLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGK 193
L +S L+ +S + K++R P+ EV D V ++ H V ++ + + G
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYISHPVAHVGVQWCDHGP 131
Query: 194 IKS 196
++S
Sbjct: 132 LQS 134
>FB|FBgn0011638 [details] [associations]
symbol:La "La autoantigen-like" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0008098
"5S rRNA primary transcript binding" evidence=NAS;IDA] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:AE014134 GO:GO:0000166 GO:GO:0003677 GO:GO:0003729
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
EMBL:U07652 EMBL:L32988 PIR:A53773 PIR:A53781 RefSeq:NP_477014.1
RefSeq:NP_724257.1 UniGene:Dm.4836 ProteinModelPortal:P40796
SMR:P40796 DIP:DIP-19001N IntAct:P40796 MINT:MINT-785398
STRING:P40796 PaxDb:P40796 EnsemblMetazoa:FBtr0081373
EnsemblMetazoa:FBtr0081374 GeneID:35305 KEGG:dme:Dmel_CG10922
CTD:35305 FlyBase:FBgn0011638 InParanoid:P40796 OMA:EHNEERR
OrthoDB:EOG4GF1X7 PhylomeDB:P40796 GenomeRNAi:35305 NextBio:792866
Bgee:P40796 GermOnline:CG10922 GO:GO:0008098 Uniprot:P40796
Length = 390
Score = 171 (65.3 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 43/131 (32%), Positives = 75/131 (57%)
Query: 77 KQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAAL 136
++ II+QVEYYF D NL DK++ I KN++G+VP+SV+ +F++L L+ + + IVAAL
Sbjct: 51 ERAIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAAL 110
Query: 137 RESS--LLVVSSNGKKVKRL--NPLPV-TEVRDPKLF--TVLVENLPEDHSVENMQRIFA 189
+S L+ +S + ++R P+P E R ++ T + P D + + A
Sbjct: 111 NKSEEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGFPLDSQISELLDFAA 170
Query: 190 EAGKIKSICIR 200
K+ ++ +R
Sbjct: 171 NYDKVVNLTMR 181
>WB|WBGene00016653 [details] [associations]
symbol:C44E4.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0040010
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
EMBL:FO080862 GO:GO:0030529 GO:GO:0040027 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
PIR:T30953 RefSeq:NP_491411.1 ProteinModelPortal:O01806 SMR:O01806
STRING:O01806 PaxDb:O01806 EnsemblMetazoa:C44E4.4 GeneID:172070
KEGG:cel:CELE_C44E4.4 UCSC:C44E4.4 CTD:172070 WormBase:C44E4.4
HOGENOM:HOG000022257 InParanoid:O01806 OMA:KSANSEI NextBio:873891
Uniprot:O01806
Length = 396
Score = 171 (65.3 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 40/140 (28%), Positives = 84/140 (60%)
Query: 68 TPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTR 127
T A + DD Q+IIKQ+EYYF + NLP DK++ ++++ +G+VPI+ + +F +L +++
Sbjct: 4 TAAAVHDDADQKIIKQLEYYFGNINLPRDKFLQEKLKED-DGWVPITTMLNFNRLASISK 62
Query: 128 NHAWIVAALRESS--LLVVSSNGKKVKRL--NPLPVTEV---RDPKLFTVLVENLPEDHS 180
+ I A++ S ++ VS + +K++R NP+P + + K TV ++ D
Sbjct: 63 DTEKIANAVKNSGSGIISVSEDNQKIRRNEENPVPENSLEYWQKIKHRTVYMKGFSTDTQ 122
Query: 181 VENMQRIFAEAGKIKSICIR 200
++++ + + G+ +++ +R
Sbjct: 123 LDDIIQWANQFGETENVLMR 142
>ASPGD|ASPL0000060980 [details] [associations]
symbol:AN1045 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:AACD01000016
EMBL:BN001308 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
OrthoDB:EOG43JGF6 Pfam:PF05383 SMART:SM00715 RefSeq:XP_658649.1
ProteinModelPortal:Q5BEI5 STRING:Q5BEI5
EnsemblFungi:CADANIAT00001597 GeneID:2876822 KEGG:ani:AN1045.2
HOGENOM:HOG000206315 OMA:EVQKDAR Uniprot:Q5BEI5
Length = 400
Score = 171 (65.3 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 49/145 (33%), Positives = 78/145 (53%)
Query: 73 TDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWI 132
TDD + I KQVE+YFSD NLP DK++++ + +K VP+ ++ SF++++R A I
Sbjct: 103 TDDPVE-IRKQVEFYFSDSNLPMDKFLLSKVGGSKNNPVPLELLHSFKRMRRFQPFSA-I 160
Query: 133 VAALRESSLLVVSSNGKKVKRLNPLPVT--EVRDP---KLF-------TVLVENLPEDHS 180
V AL+ S L ++ N V+R PLP T + DP K+F ++ + E+
Sbjct: 161 VEALKNSETLELTDNDTAVRRKVPLPETVKDTHDPTVVKVFEDKAMARSIYAKGFGEETP 220
Query: 181 VENM--QRIFAEAGKIKSICIRDPN 203
+ + FA G I +I +R N
Sbjct: 221 TTQLDIEAFFAPYGPINAIRLRRTN 245
>UNIPROTKB|D6RAF3 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR002344 PRINTS:PR00302
GO:GO:0005634 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HGNC:HGNC:24912
ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00966387
ProteinModelPortal:D6RAF3 SMR:D6RAF3 Ensembl:ENST00000507443
HOGENOM:HOG000213946 ArrayExpress:D6RAF3 Bgee:D6RAF3 Uniprot:D6RAF3
Length = 129
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 34/98 (34%), Positives = 59/98 (60%)
Query: 60 IKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASF 119
++ + S VL D I KQV+++F D NL D+++ I K+++G+V IS++ SF
Sbjct: 23 VEKKKRSRVKQVLAD-----IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSF 77
Query: 120 RKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPL 157
K+K+LT + I ALR S+++ + G +++R PL
Sbjct: 78 NKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPL 115
>UNIPROTKB|D6RF49 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR002344 PRINTS:PR00302
GO:GO:0005634 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HGNC:HGNC:24912
ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00967495
ProteinModelPortal:D6RF49 SMR:D6RF49 Ensembl:ENST00000508577
ArrayExpress:D6RF49 Bgee:D6RF49 Uniprot:D6RF49
Length = 119
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 34/98 (34%), Positives = 59/98 (60%)
Query: 60 IKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASF 119
++ + S VL D I KQV+++F D NL D+++ I K+++G+V IS++ SF
Sbjct: 23 VEKKKRSRVKQVLAD-----IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSF 77
Query: 120 RKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPL 157
K+K+LT + I ALR S+++ + G +++R PL
Sbjct: 78 NKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPL 115
>TAIR|locus:2125702 [details] [associations]
symbol:La1 "La protein 1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS;IDA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005618 "cell wall"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0000478 "endonucleolytic cleavage
involved in rRNA processing" evidence=RCA] [GO:0006406 "mRNA export
from nucleus" evidence=RCA] [GO:0006606 "protein import into
nucleus" evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide
biosynthetic process" evidence=RCA] [GO:0009561 "megagametogenesis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0048825
"cotyledon development" evidence=RCA] [GO:0051301 "cell division"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005618 GO:GO:0005654 EMBL:CP002687
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 KO:K11090 Pfam:PF05383
SMART:SM00715 HSSP:P05455 InterPro:IPR014886 Pfam:PF08777
EMBL:AY056237 IPI:IPI00530410 RefSeq:NP_567904.1 UniGene:At.2236
ProteinModelPortal:Q93ZV7 SMR:Q93ZV7 STRING:Q93ZV7 PRIDE:Q93ZV7
EnsemblPlants:AT4G32720.1 GeneID:829408 KEGG:ath:AT4G32720
TAIR:At4g32720 InParanoid:Q93ZV7 OMA:LPRDNFL PhylomeDB:Q93ZV7
ProtClustDB:CLSN2689721 Genevestigator:Q93ZV7 Uniprot:Q93ZV7
Length = 433
Score = 169 (64.5 bits), Expect = 5.5e-12, P = 5.5e-12
Identities = 49/157 (31%), Positives = 81/157 (51%)
Query: 67 STPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKR-- 124
S P LT++ + +++QVE+YFSD NLP D ++ + ++++G V +++I SF K++
Sbjct: 2 SIPC-LTEETAKTVLRQVEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGYL 60
Query: 125 ---------LTRNHAWIVA-ALRESSLLVVSSNGKKVKRLNPLPVTE--VRDPKLFTVLV 172
+ + VA LR SS L +S +GKKV R L E + TV
Sbjct: 61 KLGDSKGDDIPEDTIKAVADTLRTSSALKISDDGKKVGRSTELLKLEDLIEQLNARTVAA 120
Query: 173 ENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEESK 209
D E+++ F++ GK+ S+ R P V ES+
Sbjct: 121 SPFSYDVKREDVESFFSQYGKVNSV--RMPRHVAESR 155
>WB|WBGene00020097 [details] [associations]
symbol:larp-1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0034046 "poly(G) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0040010 GO:GO:0008266
GO:GO:0002119 GO:GO:0010171 GO:GO:0040018 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0040035 GO:GO:0000932 GO:GO:0034046
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR006607 SMART:SM00684 GeneTree:ENSGT00390000000523
EMBL:FO080694 ProteinModelPortal:D5MCN2 SMR:D5MCN2 PRIDE:D5MCN2
EnsemblMetazoa:R144.7b KEGG:cel:CELE_R144.7 CTD:175680
WormBase:R144.7b OMA:CAEMNTL ArrayExpress:D5MCN2 Uniprot:D5MCN2
Length = 1150
Score = 173 (66.0 bits), Expect = 9.4e-12, P = 9.4e-12
Identities = 47/149 (31%), Positives = 83/149 (55%)
Query: 67 STPAVLTDD-LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRL 125
+ P +TDD LK+ + KQ+EYYFS+ENL D ++ + EG++P+++IASF +++ L
Sbjct: 569 TAPRPVTDDTLKEYVRKQIEYYFSEENLQKDFFLRR--KMGPEGYLPVALIASFPRVRSL 626
Query: 126 TRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVL-VENLPEDHSVENM 184
T +++ I+ AL++S+ + +S +G +++ PV P + TV ++LP S
Sbjct: 627 TEDYSLILEALKDSTKVDMSPDGLQIRA----PVNPTIWPLMPTVSGADSLPGPSSQAPQ 682
Query: 185 QRIFAEAGKIKSICIRDPNVVEESKKKQQ 213
Q F + G + + S K QQ
Sbjct: 683 Q--FRQNGPAATAAPVESQPQASSSKPQQ 709
>TAIR|locus:2125334 [details] [associations]
symbol:LARP1c "La related protein 1c" species:3702
"Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM]
[GO:0048523 "negative regulation of cellular process" evidence=RCA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010150 "leaf senescence"
evidence=IMP] GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010150
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
EMBL:AF370207 EMBL:AY133869 IPI:IPI00542126 RefSeq:NP_567991.1
UniGene:At.23352 UniGene:At.70045 ProteinModelPortal:Q94K80
SMR:Q94K80 PRIDE:Q94K80 EnsemblPlants:AT4G35890.1 GeneID:829743
KEGG:ath:AT4G35890 TAIR:At4g35890 HOGENOM:HOG000151189
InParanoid:Q94K80 OMA:MSPRRIS PhylomeDB:Q94K80
ProtClustDB:CLSN2917672 Genevestigator:Q94K80 Uniprot:Q94K80
Length = 523
Score = 153 (58.9 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L ++ KQ++YYFSDENL TD Y+ + N EGFVP+ V+A F+K+ LT N IV A
Sbjct: 369 LHMKLHKQIQYYFSDENLITDIYLRGFM--NNEGFVPLRVVAGFKKVAELTDNIQQIVEA 426
Query: 136 LRES 139
L+ S
Sbjct: 427 LQNS 430
Score = 35 (17.4 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 4 LEGPTSTTAIPAVDSNPPSPRLDPDFSPVGS 34
+ G + A A + P SP+ P+ S
Sbjct: 49 VRGESEPIAAAAAVAGPSSPQSRAPIEPIAS 79
>MGI|MGI:2443114 [details] [associations]
symbol:Larp4 "La ribonucleoprotein domain family, member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0007010 "cytoskeleton organization" evidence=ISO]
[GO:0022604 "regulation of cell morphogenesis" evidence=ISO]
InterPro:IPR000504 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2443114
GO:GO:0007010 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723
GO:GO:0022604 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 eggNOG:NOG327281 HOGENOM:HOG000004803
HOVERGEN:HBG055137 CTD:113251 EMBL:AK049756 EMBL:AK141743
IPI:IPI00828620 RefSeq:NP_001019697.2 UniGene:Mm.28811
UniGene:Mm.490671 ProteinModelPortal:Q8BWW4 SMR:Q8BWW4
PhosphoSite:Q8BWW4 PaxDb:Q8BWW4 PRIDE:Q8BWW4 GeneID:207214
KEGG:mmu:207214 UCSC:uc007xql.1 InParanoid:Q8BWW4 OrthoDB:EOG44MXRZ
NextBio:371897 CleanEx:MM_LARP4 Genevestigator:Q8BWW4
GermOnline:ENSMUSG00000023025 Uniprot:Q8BWW4
Length = 719
Score = 164 (62.8 bits), Expect = 4.6e-11, P = 4.6e-11
Identities = 42/127 (33%), Positives = 71/127 (55%)
Query: 62 DHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRK 121
D S+ A+ T+DLK+ + KQ+E+ FS ENL D Y+++ + + + FVPI +A+ +
Sbjct: 101 DVSGESSSAISTEDLKECLKKQLEFCFSRENLSKDLYLIS--QMDSDQFVPIWTVANMEE 158
Query: 122 LKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSV 181
+K+LT N I+ LR S ++ V G+KV+ P K V++ +PE V
Sbjct: 159 IKKLTTNTDLILEVLRSSPMVQVDEKGEKVR-----P-----SHKRCIVILREIPETTPV 208
Query: 182 ENMQRIF 188
E ++ +F
Sbjct: 209 EEVKALF 215
>UNIPROTKB|Q96J85 [details] [associations]
symbol:LARP4 "La-related protein 4" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:AC090058 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HOGENOM:HOG000004803
UniGene:Hs.26613 DNASU:113251 GeneID:113251 KEGG:hsa:113251
CTD:113251 HGNC:HGNC:24320 PharmGKB:PA142671566 ChiTaRS:LARP4
GenomeRNAi:113251 NextBio:78808 RefSeq:NP_001164275.1 EMBL:AY004310
IPI:IPI01012507 SMR:Q96J85 STRING:Q96J85 Ensembl:ENST00000518561
HOVERGEN:HBG062469 Uniprot:Q96J85
Length = 375
Score = 158 (60.7 bits), Expect = 6.4e-11, P = 6.4e-11
Identities = 41/129 (31%), Positives = 71/129 (55%)
Query: 60 IKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASF 119
I D S AV T+DLK+ + KQ+E+ FS ENL D Y+++ + + + F+PI +A+
Sbjct: 33 IYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLIS--QMDSDQFIPIWTVANM 90
Query: 120 RKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDH 179
++K+LT + I+ LR S ++ V G+KV+ P K V++ +PE
Sbjct: 91 EEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVR-----P-----SHKRCIVILREIPETT 140
Query: 180 SVENMQRIF 188
+E ++ +F
Sbjct: 141 PIEEVKGLF 149
>DICTYBASE|DDB_G0289333 [details] [associations]
symbol:DDB_G0289333 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0289333 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
EMBL:AAFI02000139 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 eggNOG:NOG327281 RefSeq:XP_636262.1
ProteinModelPortal:Q54HN9 EnsemblProtists:DDB0188365 GeneID:8627081
KEGG:ddi:DDB_G0289333 InParanoid:Q54HN9 OMA:YADMIAM
ProtClustDB:CLSZ2846640 Uniprot:Q54HN9
Length = 621
Score = 161 (61.7 bits), Expect = 7.7e-11, P = 7.7e-11
Identities = 43/123 (34%), Positives = 70/123 (56%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L+ I KQ+EYY S ENL TD Y+ + R N E FV I VIA+F+ +K LT + IV
Sbjct: 22 LEDAIKKQIEYYLSRENLSTDYYLTS--RMNNEMFVAIEVIANFKMVKNLTTDMNLIVEV 79
Query: 136 LRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGK-I 194
+ +SS +++ +K P +++ +++ ++P + VE ++ IF+E GK I
Sbjct: 80 MSKSSNVIIDETKTLIK-----PSFKLQRN---IIILRDIPTETPVEEIRGIFSETGKTI 131
Query: 195 KSI 197
S+
Sbjct: 132 SSV 134
>UNIPROTKB|E9PDG5 [details] [associations]
symbol:LARP4 "La-related protein 4" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:AC090058 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 UniGene:Hs.26613
DNASU:113251 GeneID:113251 KEGG:hsa:113251 CTD:113251
HGNC:HGNC:24320 ChiTaRS:LARP4 GenomeRNAi:113251 NextBio:78808
IPI:IPI00418689 RefSeq:NP_001164275.1 ProteinModelPortal:E9PDG5
SMR:E9PDG5 Ensembl:ENST00000522085 ArrayExpress:E9PDG5 Bgee:E9PDG5
Uniprot:E9PDG5
Length = 445
Score = 158 (60.7 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 41/129 (31%), Positives = 71/129 (55%)
Query: 60 IKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASF 119
I D S AV T+DLK+ + KQ+E+ FS ENL D Y+++ + + + F+PI +A+
Sbjct: 103 IYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLIS--QMDSDQFIPIWTVANM 160
Query: 120 RKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDH 179
++K+LT + I+ LR S ++ V G+KV+ P K V++ +PE
Sbjct: 161 EEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVR-----P-----SHKRCIVILREIPETT 210
Query: 180 SVENMQRIF 188
+E ++ +F
Sbjct: 211 PIEEVKGLF 219
>FB|FBgn0261618 [details] [associations]
symbol:larp "La related protein" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0035071
"salivary gland cell autophagic cell death" evidence=IEP]
[GO:0048102 "autophagic cell death" evidence=IEP] [GO:0003674
"molecular_function" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0051225 "spindle assembly" evidence=IMP]
[GO:0007076 "mitotic chromosome condensation" evidence=IMP]
[GO:0051299 "centrosome separation" evidence=IMP] [GO:0007053
"spindle assembly involved in male meiosis" evidence=IMP]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0007140 "male
meiosis" evidence=IMP] [GO:0000001 "mitochondrion inheritance"
evidence=IMP] [GO:0035186 "syncytial blastoderm mitotic cell cycle"
evidence=IMP] EMBL:AE014297 GO:GO:0005829 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0000001 GO:GO:0035071
GO:GO:0035186 InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193
Pfam:PF05383 SMART:SM00715 InterPro:IPR006607 SMART:SM00684
ChiTaRS:LARP1 GeneTree:ENSGT00390000000523 EMBL:AF221108
EMBL:AY113653 EMBL:AY118468 EMBL:BT100187 RefSeq:NP_001163757.1
RefSeq:NP_001247347.1 RefSeq:NP_001247348.1 RefSeq:NP_524998.1
RefSeq:NP_733244.5 RefSeq:NP_733245.1 IntAct:Q9VAW5 STRING:Q9VAW5
PaxDb:Q9VAW5 PRIDE:Q9VAW5 EnsemblMetazoa:FBtr0301180
EnsemblMetazoa:FBtr0306389 EnsemblMetazoa:FBtr0306390 GeneID:53567
KEGG:dme:Dmel_CG42551 CTD:53567 FlyBase:FBgn0261618
InParanoid:Q9VAW5 OMA:EPEINEM PhylomeDB:Q9VAW5 GenomeRNAi:53567
NextBio:841422 Bgee:Q9VAW5 GermOnline:CG14066 GO:GO:0007053
Uniprot:Q9VAW5
Length = 1673
Score = 152 (58.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 43/121 (35%), Positives = 71/121 (58%)
Query: 74 DDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIV 133
+ +K+ I KQVEYYFS +NL D ++ + + EG++P+++IASF ++ LT + A IV
Sbjct: 727 NSIKEAIKKQVEYYFSVDNLTGDFFLRR--KMDPEGYIPVTLIASFHRVLALTTDVAVIV 784
Query: 134 AALRESSLLVVSSNGKKVK-RLNPL--PVTEVRD-----PKLF-TVLVENLPEDHSVENM 184
A++ES L + G KV+ + P P+TEV + PK T+ E L ++ E +
Sbjct: 785 NAIKESDKLELFE-GYKVRTKTTPTTWPITEVPEVNEGEPKAIGTLEQEQLEQNDGQEKL 843
Query: 185 Q 185
+
Sbjct: 844 E 844
Score = 39 (18.8 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 3 GLEGPTSTTAIPAVDSNPPSPRL 25
G T+TTA VD+ P L
Sbjct: 42 GTSNTTTTTARATVDNKENQPNL 64
>UNIPROTKB|G3XAA8 [details] [associations]
symbol:LARP4 "La-related protein 4" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:CH471111 GO:GO:0030529
EMBL:AC090058 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 RefSeq:NP_001164279.1 UniGene:Hs.26613 GeneID:113251
KEGG:hsa:113251 CTD:113251 HGNC:HGNC:24320 ChiTaRS:LARP4
GenomeRNAi:113251 NextBio:78808 ProteinModelPortal:G3XAA8
SMR:G3XAA8 PRIDE:G3XAA8 Ensembl:ENST00000293618 ArrayExpress:G3XAA8
Bgee:G3XAA8 Uniprot:G3XAA8
Length = 653
Score = 158 (60.7 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 41/129 (31%), Positives = 71/129 (55%)
Query: 60 IKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASF 119
I D S AV T+DLK+ + KQ+E+ FS ENL D Y+++ + + + F+PI +A+
Sbjct: 103 IYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLIS--QMDSDQFIPIWTVANM 160
Query: 120 RKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDH 179
++K+LT + I+ LR S ++ V G+KV+ P K V++ +PE
Sbjct: 161 EEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVR-----P-----SHKRCIVILREIPETT 210
Query: 180 SVENMQRIF 188
+E ++ +F
Sbjct: 211 PIEEVKGLF 219
>UNIPROTKB|F1SH87 [details] [associations]
symbol:LARP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022604 "regulation of cell morphogenesis"
evidence=IEA] [GO:0007010 "cytoskeleton organization" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
SMART:SM00360 GO:GO:0007010 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0022604 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 GeneTree:ENSGT00530000063417
EMBL:AEMK01178304 EMBL:CU856260 EMBL:CU984599
Ensembl:ENSSSCT00000000235 OMA:CKEYEIM Uniprot:F1SH87
Length = 699
Score = 158 (60.7 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 40/129 (31%), Positives = 71/129 (55%)
Query: 60 IKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASF 119
I D S A+ T+DLK+ + KQ+E+ FS ENL D Y+++ + + + F+PI +A+
Sbjct: 101 IYDVSGESNSAISTEDLKECLKKQLEFCFSRENLSKDLYLIS--QMDSDQFIPIWTVANM 158
Query: 120 RKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDH 179
++K+LT + I+ LR S ++ V G+KV+ P K V++ +PE
Sbjct: 159 EEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVR-----P-----SHKRCIVILREIPETT 208
Query: 180 SVENMQRIF 188
+E ++ +F
Sbjct: 209 PIEEVKALF 217
>FB|FBgn0260771 [details] [associations]
symbol:Larp7 "La related protein 7" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0097322 "7SK snRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:AE014298 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 KO:K15191
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
GO:GO:0097322 EMBL:AY061107 RefSeq:NP_524795.2 UniGene:Dm.31047
SMR:Q9W362 IntAct:Q9W362 STRING:Q9W362 EnsemblMetazoa:FBtr0301275
GeneID:44900 KEGG:dme:Dmel_CG42569 UCSC:CG12058-RA
FlyBase:FBgn0260771 InParanoid:Q9W362 OMA:PGLIVEC OrthoDB:EOG4CVDQ5
GenomeRNAi:44900 NextBio:837804 Uniprot:Q9W362
Length = 595
Score = 157 (60.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 36/117 (30%), Positives = 64/117 (54%)
Query: 83 QVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLL 142
Q+E+YF D NL D+++ + ++ +VP+ + +F K+K LT++ I AL S LL
Sbjct: 66 QMEFYFGDANLSKDRFLRRYVEQDP--YVPLEIFLTFNKIKTLTQDVQQIAKALSNSQLL 123
Query: 143 VVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICI 199
+ KVKR LP + RD T+ VE LP + + + ++ +F+ G + + +
Sbjct: 124 ELDETELKVKRRTKLP--DQRDVNDKTLYVEALPANATHDWLKEVFSRYGPVAYVSL 178
>UNIPROTKB|Q71RC2 [details] [associations]
symbol:LARP4 "La-related protein 4" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IMP] [GO:0022604 "regulation
of cell morphogenesis" evidence=IMP] InterPro:IPR000504
PROSITE:PS50102 SMART:SM00360 GO:GO:0007010 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 EMBL:CH471111 GO:GO:0022604
EMBL:AC090058 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 eggNOG:NOG327281 HOGENOM:HOG000004803
HOVERGEN:HBG055137 EMBL:AK055521 EMBL:AK125113 EMBL:AK291746
EMBL:AF370416 EMBL:BX647457 EMBL:CR936626 IPI:IPI00043638
IPI:IPI00395347 IPI:IPI00797384 IPI:IPI00982060
RefSeq:NP_001164279.1 RefSeq:NP_443111.4 RefSeq:NP_954658.2
UniGene:Hs.26613 PDB:2CQK PDB:3PKN PDBsum:2CQK PDBsum:3PKN
ProteinModelPortal:Q71RC2 SMR:Q71RC2 IntAct:Q71RC2 STRING:Q71RC2
PhosphoSite:Q71RC2 DMDM:189047131 PaxDb:Q71RC2 PRIDE:Q71RC2
DNASU:113251 Ensembl:ENST00000347328 Ensembl:ENST00000398473
Ensembl:ENST00000429001 Ensembl:ENST00000518444
Ensembl:ENST00000520064 GeneID:113251 KEGG:hsa:113251
UCSC:uc001rwm.3 UCSC:uc001rws.2 UCSC:uc009zlr.1 CTD:113251
GeneCards:GC12P050794 HGNC:HGNC:24320 HPA:HPA039306 HPA:HPA039673
neXtProt:NX_Q71RC2 PharmGKB:PA142671566 OMA:WTIANME ChiTaRS:LARP4
EvolutionaryTrace:Q71RC2 GenomeRNAi:113251 NextBio:78808
PMAP-CutDB:Q71RC2 ArrayExpress:Q71RC2 Bgee:Q71RC2 CleanEx:HS_LARP4
Genevestigator:Q71RC2 GermOnline:ENSG00000161813 Uniprot:Q71RC2
Length = 724
Score = 158 (60.7 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 41/129 (31%), Positives = 71/129 (55%)
Query: 60 IKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASF 119
I D S AV T+DLK+ + KQ+E+ FS ENL D Y+++ + + + F+PI +A+
Sbjct: 103 IYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLIS--QMDSDQFIPIWTVANM 160
Query: 120 RKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDH 179
++K+LT + I+ LR S ++ V G+KV+ P K V++ +PE
Sbjct: 161 EEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVR-----P-----SHKRCIVILREIPETT 210
Query: 180 SVENMQRIF 188
+E ++ +F
Sbjct: 211 PIEEVKGLF 219
>TAIR|locus:2017809 [details] [associations]
symbol:La2 "La protein 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0000278
"mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0009410 "response to xenobiotic stimulus"
evidence=RCA] [GO:0048522 "positive regulation of cellular process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 UniGene:At.27554 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 EMBL:BT026473
IPI:IPI00529259 RefSeq:NP_178106.2 UniGene:At.34029
ProteinModelPortal:Q0V7U7 SMR:Q0V7U7 STRING:Q0V7U7 PaxDb:Q0V7U7
PRIDE:Q0V7U7 EnsemblPlants:AT1G79880.1 GeneID:844327
KEGG:ath:AT1G79880 TAIR:At1g79880 HOGENOM:HOG000239251
InParanoid:Q0V7U7 OMA:INGEMER PhylomeDB:Q0V7U7
ProtClustDB:CLSN2680670 Genevestigator:Q0V7U7 Uniprot:Q0V7U7
Length = 399
Score = 153 (58.9 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 42/150 (28%), Positives = 81/150 (54%)
Query: 74 DDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTR----NH 129
++ ++++ QVE+YFSD NLPTD ++ + K+K+G V + ++ SF +++ L N
Sbjct: 7 EETAKKLLTQVEFYFSDSNLPTDGFLNREVTKSKDGLVSLPLVCSFSRMRNLLGLGNINR 66
Query: 130 AWI-------VA-ALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSV 181
I VA LR S L VS+NG+++ R L E ++ + P ++S+
Sbjct: 67 EDIPPRIVEEVANLLRTSDFLKVSNNGQRIGRGTKLSKPEEVLEQVHRRTLAASPFEYSI 126
Query: 182 --ENMQRIFAEAGKIKSICIRDPNVVEESK 209
E++ F++ K+ S+ + PN+ ++ +
Sbjct: 127 KMEDVSSFFSQYAKVNSVRL-PPNIADKRR 155
>TAIR|locus:2156912 [details] [associations]
symbol:LARP1b "AT5G66100" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0010150 "leaf senescence"
evidence=IMP] EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010150
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 EMBL:AY091765 EMBL:AY149955 IPI:IPI00523817
RefSeq:NP_201411.2 UniGene:At.9216 ProteinModelPortal:Q8RWR2
SMR:Q8RWR2 PaxDb:Q8RWR2 PRIDE:Q8RWR2 EnsemblPlants:AT5G66100.1
GeneID:836742 KEGG:ath:AT5G66100 TAIR:At5g66100
HOGENOM:HOG000149120 InParanoid:Q8RWR2 OMA:DQMNDEG PhylomeDB:Q8RWR2
ProtClustDB:CLSN2915016 Genevestigator:Q8RWR2 Uniprot:Q8RWR2
Length = 453
Score = 153 (58.9 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L +I+ QVEYYFS +NL D+++ + + N EG+VP+ VIA+FR+L LT N I+ A
Sbjct: 335 LYNKILTQVEYYFSADNLSRDEHLRD--QMNDEGWVPVRVIAAFRRLAELTNNIQTILEA 392
Query: 136 LRESSLLVVSSNGKKVKR 153
LR S VV G+ ++R
Sbjct: 393 LRSSE--VVEIQGETLRR 408
>UNIPROTKB|F1MHD9 [details] [associations]
symbol:LARP4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0022604 "regulation of cell morphogenesis"
evidence=IEA] [GO:0007010 "cytoskeleton organization" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
SMART:SM00360 GO:GO:0007010 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0022604 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 GeneTree:ENSGT00530000063417 OMA:WTIANME
EMBL:DAAA02012927 IPI:IPI01002357 Ensembl:ENSBTAT00000022821
Uniprot:F1MHD9
Length = 621
Score = 155 (59.6 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 40/129 (31%), Positives = 71/129 (55%)
Query: 60 IKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASF 119
I D S A+ T++LK+ + KQ+E+ FS ENL D Y+++ + + + FVPI +A+
Sbjct: 102 IYDVSGESNSAISTEELKECLKKQLEFCFSRENLSKDLYLIS--QMDSDQFVPIWTVANM 159
Query: 120 RKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDH 179
++K+LT + I+ LR S ++ V G+KV+ P K V++ +PE
Sbjct: 160 EEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVR-----P-----SHKRCIVILREIPETT 209
Query: 180 SVENMQRIF 188
+E ++ +F
Sbjct: 210 PIEEVKALF 218
>UNIPROTKB|E2R028 [details] [associations]
symbol:LARP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0022604 "regulation of cell morphogenesis"
evidence=IEA] [GO:0007010 "cytoskeleton organization" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
SMART:SM00360 GO:GO:0007010 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0022604 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 GeneTree:ENSGT00530000063417 CTD:113251
EMBL:AAEX03015048 EMBL:AAEX03015046 EMBL:AAEX03015047
RefSeq:XP_534803.2 Ensembl:ENSCAFT00000013044 GeneID:477609
KEGG:cfa:477609 Uniprot:E2R028
Length = 721
Score = 154 (59.3 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 39/129 (30%), Positives = 71/129 (55%)
Query: 60 IKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASF 119
I D S+ A+ +DLK+ + KQ+E+ FS ENL D Y+++ + + + F+PI +A+
Sbjct: 100 IYDVSGESSSAISAEDLKECLKKQLEFCFSRENLSKDLYLIS--QMDSDQFIPIWTVANM 157
Query: 120 RKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDH 179
++K+LT + I+ LR S ++ V G+KV+ P K V++ +PE
Sbjct: 158 EEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVR-----P-----SHKRCIVILREIPETT 207
Query: 180 SVENMQRIF 188
+E ++ +F
Sbjct: 208 PIEEVKALF 216
>UNIPROTKB|F1PIU8 [details] [associations]
symbol:LARP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 GeneTree:ENSGT00530000063417 OMA:WTIANME
EMBL:AAEX03015048 EMBL:AAEX03015046 EMBL:AAEX03015047
Ensembl:ENSCAFT00000013013 Uniprot:F1PIU8
Length = 723
Score = 154 (59.3 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 39/129 (30%), Positives = 71/129 (55%)
Query: 60 IKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASF 119
I D S+ A+ +DLK+ + KQ+E+ FS ENL D Y+++ + + + F+PI +A+
Sbjct: 102 IYDVSGESSSAISAEDLKECLKKQLEFCFSRENLSKDLYLIS--QMDSDQFIPIWTVANM 159
Query: 120 RKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDH 179
++K+LT + I+ LR S ++ V G+KV+ P K V++ +PE
Sbjct: 160 EEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVR-----P-----SHKRCIVILREIPETT 209
Query: 180 SVENMQRIF 188
+E ++ +F
Sbjct: 210 PIEEVKALF 218
>UNIPROTKB|H9KZD5 [details] [associations]
symbol:LARP4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007010 "cytoskeleton organization" evidence=IEA] [GO:0022604
"regulation of cell morphogenesis" evidence=IEA] InterPro:IPR000504
SMART:SM00360 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063417 OMA:WTIANME EMBL:AADN02072425
EMBL:AADN02072426 Ensembl:ENSGALT00000009951 Uniprot:H9KZD5
Length = 750
Score = 151 (58.2 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 40/130 (30%), Positives = 70/130 (53%)
Query: 59 PIKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIAS 118
PI + V T+D+++ + KQ+E+ FS ENL D Y+M+ + + + FVPI IA+
Sbjct: 102 PIYEVAGEGNSVVSTEDIRECLRKQLEFCFSRENLSKDLYLMS--QMDSDQFVPIWTIAN 159
Query: 119 FRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPED 178
+K+LT + I+ LR S ++ V G+KV+ P + K +++ +PE
Sbjct: 160 MEGIKKLTTDMDLILDVLRSSPMVQVDETGEKVR-----P-----NHKRCIIILREIPET 209
Query: 179 HSVENMQRIF 188
VE ++ +F
Sbjct: 210 TPVEEVKALF 219
>DICTYBASE|DDB_G0281835 [details] [associations]
symbol:DDB_G0281835 species:44689 "Dictyostelium
discoideum" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 PROSITE:PS50102
dictyBase:DDB_G0281835 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 EMBL:AAFI02000043
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 RefSeq:XP_640449.1 ProteinModelPortal:Q54TE0
EnsemblProtists:DDB0204237 GeneID:8623262 KEGG:ddi:DDB_G0281835
InParanoid:Q54TE0 OMA:HITEFTE Uniprot:Q54TE0
Length = 381
Score = 143 (55.4 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 35/116 (30%), Positives = 69/116 (59%)
Query: 80 IIKQVEYYFSDENLPTDKYMMNLIRKNK-EGFVPISVIASFRKLKRLTRNHAWIVAAL-- 136
I K +E+YFSD NL DK++ NLI+ N+ +G++ +S+I F+K+K + ++ L
Sbjct: 9 IKKLIEFYFSDSNLRKDKFLFNLIQTNQNDGWIDLSIILEFQKIKSVINENSLTEQELEQ 68
Query: 137 --RESSLLVVSSNGKKVKRLN-PLP-VT--EVRDPKLFTVLVENLPEDHSVENMQR 186
++S LL+++ + K+KR+ P+ +T E+++ T+ +E + S ++ R
Sbjct: 69 VFKDSKLLILNQDKNKIKRIEWPIKELTQLEIKEIDEKTIYIEPITNKISTPDLIR 124
>RGD|1306683 [details] [associations]
symbol:Larp1 "La ribonucleoprotein domain family, member 1"
species:10116 "Rattus norvegicus" [GO:0016239 "positive regulation
of macroautophagy" evidence=ISO] RGD:1306683 Gene3D:1.10.10.10
InterPro:IPR011991 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 InterPro:IPR006607 SMART:SM00684
GeneTree:ENSGT00390000000523 IPI:IPI00369227 PRIDE:F1M062
Ensembl:ENSRNOT00000036959 Uniprot:F1M062
Length = 1024
Score = 141 (54.7 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 45/121 (37%), Positives = 68/121 (56%)
Query: 66 SSTPAVLTDD--LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLK 123
SST D LK I +Q+EYYFS +NL D ++ + + +GF+PI++IASF +++
Sbjct: 318 SSTEIYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRR--KMDADGFLPITLIASFHRVQ 375
Query: 124 RLTRNHAWIVAALRESSLLVVSSNGKKVKRLN-----PLPVTEVRDPKL--FTVLVENLP 176
LT + + I AAL++S VV +KV+R PLP + D F+ L+ N P
Sbjct: 376 ALTTDISLIFAALKDSK--VVEMVEEKVRRREEPEKWPLPGPPIVDYSQTDFSQLL-NCP 432
Query: 177 E 177
E
Sbjct: 433 E 433
Score = 41 (19.5 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 4 LEGPTSTTAIPAVDSNPPSPRLDPDFSP 31
++G T +P V PP+P P+ P
Sbjct: 213 IKGSEPATYMP-VSVAPPTPAWQPETKP 239
>UNIPROTKB|Q6PKG0 [details] [associations]
symbol:LARP1 "La-related protein 1" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0016239
"positive regulation of macroautophagy" evidence=IMP]
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0016239
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 InterPro:IPR006607 SMART:SM00684 EMBL:BC001460
EMBL:BC033856 EMBL:AK091465 EMBL:AB018274 EMBL:AL133034
IPI:IPI00185919 IPI:IPI00411690 PIR:T42646 RefSeq:NP_056130.2
UniGene:Hs.292078 ProteinModelPortal:Q6PKG0 SMR:Q6PKG0
IntAct:Q6PKG0 MINT:MINT-1631511 STRING:Q6PKG0 PhosphoSite:Q6PKG0
DMDM:73621135 PaxDb:Q6PKG0 PRIDE:Q6PKG0 DNASU:23367
Ensembl:ENST00000336314 Ensembl:ENST00000518297 GeneID:23367
KEGG:hsa:23367 UCSC:uc003lvo.3 UCSC:uc010jie.1 CTD:23367
GeneCards:GC05P154092 HGNC:HGNC:29531 HPA:CAB015222 MIM:612059
neXtProt:NX_Q6PKG0 PharmGKB:PA142671564 HOGENOM:HOG000113283
HOVERGEN:HBG054322 InParanoid:Q6PKG0 OMA:GSEPATY ChiTaRS:LARP1
GenomeRNAi:23367 NextBio:45430 PMAP-CutDB:Q6PKG0 Bgee:Q6PKG0
CleanEx:HS_LARP1 Genevestigator:Q6PKG0 GermOnline:ENSG00000155506
Uniprot:Q6PKG0
Length = 1096
Score = 140 (54.3 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 44/119 (36%), Positives = 66/119 (55%)
Query: 66 SSTPAVLTDD--LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLK 123
SST D LK I +Q+EYYFS +NL D ++ + + +GF+PI++IASF +++
Sbjct: 391 SSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRR--KMDADGFLPITLIASFHRVQ 448
Query: 124 RLTRNHAWIVAALRESSLLVVSSNGKKVKRLN-----PLPVTEVRDPKLFTVLVENLPE 177
LT + + I AAL++S VV +KV+R PLP F+ L+ N PE
Sbjct: 449 ALTTDISLIFAALKDSK--VVEIVDEKVRRREEPEKWPLPPIVDYSQTDFSQLL-NCPE 504
Score = 46 (21.3 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 4 LEGPTSTTAIPAVDSNPPSPRLDPDFSP 31
++G S T +P PP+P P+ P
Sbjct: 288 IKGSESATYVPVA---PPTPAWQPEIKP 312
>UNIPROTKB|F1M4K9 [details] [associations]
symbol:LOC683071 "Protein LOC683071" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 GO:GO:0007010 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0022604 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 IPI:IPI00952080
Ensembl:ENSRNOT00000065149 Uniprot:F1M4K9
Length = 574
Score = 143 (55.4 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 43/125 (34%), Positives = 71/125 (56%)
Query: 64 ENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLK 123
E+SST + T+DLK+ + KQ+E FS ENL D Y+++ + + + FVPI IA+ ++K
Sbjct: 5 ESSST--ISTEDLKECLKKQLESCFSRENLSKDLYLIS--QMDSDQFVPIWTIANMEEIK 60
Query: 124 RLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVEN 183
+LT + I+ LR S ++ V G+KV+ P K V++ +PE VE
Sbjct: 61 KLTTDPDLILEVLRSSPMVQVDE-GEKVR---P-------SHKRCIVILREIPETTPVEE 109
Query: 184 MQRIF 188
++ +F
Sbjct: 110 VKALF 114
>UNIPROTKB|G3V0E9 [details] [associations]
symbol:LARP1B "La-related protein 1B" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:CH471056
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 EMBL:AC096898 EMBL:AC099340 EMBL:AC108045
EMBL:AC114735 EMBL:AC124030 RefSeq:NP_115615.2 UniGene:Hs.657067
GeneID:55132 KEGG:hsa:55132 CTD:55132 HGNC:HGNC:24704
ChiTaRS:LARP1B GenomeRNAi:55132 NextBio:58806
ProteinModelPortal:G3V0E9 SMR:G3V0E9 PRIDE:G3V0E9
Ensembl:ENST00000432347 ArrayExpress:G3V0E9 Bgee:G3V0E9
Uniprot:G3V0E9
Length = 358
Score = 141 (54.7 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 39/107 (36%), Positives = 66/107 (61%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
LK+ I +Q+EYYFS ENL D ++ + +++GF+PIS+IA F++++ LT N I+ A
Sbjct: 215 LKEYIKRQIEYYFSVENLERDFFLRG--KMDEQGFLPISLIAGFQRVQALTTNLNLILEA 272
Query: 136 LRESSLL-VVSSN-GKKVKRLN-PLPVTEVRD--PKLFTVLVENLPE 177
L++S+ + +V KK++ P+P R P F+ L++ PE
Sbjct: 273 LKDSTEVEIVDEKMRKKIEPEKWPIPGPPPRSVPPTDFSQLID-CPE 318
>FB|FBgn0035424 [details] [associations]
symbol:CG11505 species:7227 "Drosophila melanogaster"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
EMBL:AE014296 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 HSSP:Q71RC2
GeneTree:ENSGT00530000063417 EMBL:BT010118 RefSeq:NP_647793.1
RefSeq:NP_728843.1 RefSeq:NP_995985.2 ProteinModelPortal:Q9I7T7
SMR:Q9I7T7 IntAct:Q9I7T7 MINT:MINT-298656 STRING:Q9I7T7
PaxDb:Q9I7T7 EnsemblMetazoa:FBtr0073046 GeneID:38399
KEGG:dme:Dmel_CG11505 UCSC:CG11505-RB FlyBase:FBgn0035424
InParanoid:Q9VZS2 OMA:TPNINAS OrthoDB:EOG4V15H8 PhylomeDB:Q9I7T7
ChiTaRS:CG11505 GenomeRNAi:38399 NextBio:808431 Bgee:Q9I7T7
Uniprot:Q9I7T7
Length = 1531
Score = 145 (56.1 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 34/98 (34%), Positives = 55/98 (56%)
Query: 58 DPIKDHENSS---TPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPIS 114
DP + N++ P + D LKQ + Q+EYYFS ENL D Y+++ + + + +VPI
Sbjct: 247 DPQQGSHNAAGGEEPNIPLDKLKQMLATQLEYYFSRENLANDTYLLS--QMDSDQYVPIY 304
Query: 115 VIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVK 152
+A F +++LT + I LRES + V G +V+
Sbjct: 305 TVARFNLVRKLTNDINLITEVLRESPNVQVDDKGLRVR 342
>UNIPROTKB|G3XAJ5 [details] [associations]
symbol:LARP1B "La-related protein 1B" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:CH471056
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 EMBL:AC096898 EMBL:AC099340 EMBL:AC108045
EMBL:AC114735 EMBL:AC124030 RefSeq:NP_835144.1 UniGene:Hs.657067
GeneID:55132 KEGG:hsa:55132 CTD:55132 HGNC:HGNC:24704
ChiTaRS:LARP1B GenomeRNAi:55132 NextBio:58806
ProteinModelPortal:G3XAJ5 SMR:G3XAJ5 PRIDE:G3XAJ5
Ensembl:ENST00000427266 ArrayExpress:G3XAJ5 Bgee:G3XAJ5
Uniprot:G3XAJ5
Length = 522
Score = 141 (54.7 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 39/107 (36%), Positives = 66/107 (61%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
LK+ I +Q+EYYFS ENL D ++ + +++GF+PIS+IA F++++ LT N I+ A
Sbjct: 215 LKEYIKRQIEYYFSVENLERDFFLRG--KMDEQGFLPISLIAGFQRVQALTTNLNLILEA 272
Query: 136 LRESSLL-VVSSN-GKKVKRLN-PLPVTEVRD--PKLFTVLVENLPE 177
L++S+ + +V KK++ P+P R P F+ L++ PE
Sbjct: 273 LKDSTEVEIVDEKMRKKIEPEKWPIPGPPPRSVPPTDFSQLID-CPE 318
>UNIPROTKB|Q659C4 [details] [associations]
symbol:LARP1B "La-related protein 1B" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 EMBL:AK001240
EMBL:AK027164 EMBL:AK092764 EMBL:AK098437 EMBL:AL137759
EMBL:AL832170 EMBL:BX537937 EMBL:AC096898 EMBL:AC099340
EMBL:AC108045 EMBL:AC114735 EMBL:AC124030 EMBL:BC030516
EMBL:BC050654 EMBL:BC062606 EMBL:BC110300 IPI:IPI00383949
IPI:IPI00855721 IPI:IPI00855786 IPI:IPI00855812 IPI:IPI00855930
IPI:IPI00855953 IPI:IPI00856120 IPI:IPI00940348 IPI:IPI00943149
RefSeq:NP_060548.2 RefSeq:NP_115615.2 RefSeq:NP_835144.1
UniGene:Hs.657067 HSSP:Q71RC2 ProteinModelPortal:Q659C4 SMR:Q659C4
DIP:DIP-47319N IntAct:Q659C4 PhosphoSite:Q659C4 DMDM:158564329
PaxDb:Q659C4 PRIDE:Q659C4 DNASU:55132 Ensembl:ENST00000264584
Ensembl:ENST00000326639 Ensembl:ENST00000354456
Ensembl:ENST00000394288 Ensembl:ENST00000441387 GeneID:55132
KEGG:hsa:55132 UCSC:uc003ifw.1 UCSC:uc003iga.3 UCSC:uc003igc.3
UCSC:uc003igf.3 CTD:55132 GeneCards:GC04P128983 HGNC:HGNC:24704
HPA:HPA036280 neXtProt:NX_Q659C4 PharmGKB:PA165664174
InParanoid:Q659C4 OMA:PPYVKKH OrthoDB:EOG4PZJ64 PhylomeDB:Q659C4
ChiTaRS:LARP1B GenomeRNAi:55132 NextBio:58806 ArrayExpress:Q659C4
Bgee:Q659C4 CleanEx:HS_LARP2 Genevestigator:Q659C4
InterPro:IPR006607 SMART:SM00684 Uniprot:Q659C4
Length = 914
Score = 141 (54.7 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 39/107 (36%), Positives = 66/107 (61%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
LK+ I +Q+EYYFS ENL D ++ + +++GF+PIS+IA F++++ LT N I+ A
Sbjct: 215 LKEYIKRQIEYYFSVENLERDFFLRG--KMDEQGFLPISLIAGFQRVQALTTNLNLILEA 272
Query: 136 LRESSLL-VVSSN-GKKVKRLN-PLPVTEVRD--PKLFTVLVENLPE 177
L++S+ + +V KK++ P+P R P F+ L++ PE
Sbjct: 273 LKDSTEVEIVDEKMRKKIEPEKWPIPGPPPRSVPPTDFSQLID-CPE 318
>MGI|MGI:1890165 [details] [associations]
symbol:Larp1 "La ribonucleoprotein domain family, member 1"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISA] [GO:0016239 "positive regulation of
macroautophagy" evidence=ISO] MGI:MGI:1890165 GO:GO:0005737
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0016239
EMBL:AL672182 InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193
Pfam:PF05383 SMART:SM00715 OrthoDB:EOG4PZJ64 InterPro:IPR006607
SMART:SM00684 HOGENOM:HOG000113283 HOVERGEN:HBG054322 OMA:GSEPATY
EMBL:BC053449 EMBL:AK129202 IPI:IPI00929761 IPI:IPI00929786
UniGene:Mm.248843 ProteinModelPortal:Q6ZQ58 SMR:Q6ZQ58
STRING:Q6ZQ58 PhosphoSite:Q6ZQ58 PaxDb:Q6ZQ58 PRIDE:Q6ZQ58
Ensembl:ENSMUST00000071487 UCSC:uc007jah.2
GeneTree:ENSGT00390000000523 InParanoid:Q6ZQ58 Bgee:Q6ZQ58
CleanEx:MM_LARP1 Genevestigator:Q6ZQ58
GermOnline:ENSMUSG00000037331 Uniprot:Q6ZQ58
Length = 1072
Score = 139 (54.0 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 44/124 (35%), Positives = 71/124 (57%)
Query: 64 ENSSTPAVLTDD---LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFR 120
+N S+ + + D LK I +Q+EYYFS +NL D ++ + + +GF+PI++IASF
Sbjct: 363 DNVSSNEIYSMDQELLKDYIKRQIEYYFSVDNLERDFFLRR--KMDADGFLPITLIASFH 420
Query: 121 KLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLN-----PLPVTEVRDPKL--FTVLVE 173
+++ LT + + I AAL++S VV +KV+R PLP + D F+ L+
Sbjct: 421 RVQALTTDISLIFAALKDSK--VVEMVEEKVRRREEPEKWPLPGPPIVDYSQTDFSQLL- 477
Query: 174 NLPE 177
N PE
Sbjct: 478 NCPE 481
>UNIPROTKB|F1P339 [details] [associations]
symbol:LARP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0016239 "positive regulation of macroautophagy"
evidence=IEA] Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016239
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR006607 SMART:SM00684 OMA:GSEPATY
GeneTree:ENSGT00390000000523 EMBL:AADN02028672 IPI:IPI00590067
Ensembl:ENSGALT00000006374 Uniprot:F1P339
Length = 927
Score = 138 (53.6 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 34/90 (37%), Positives = 56/90 (62%)
Query: 66 SSTPAVLTDD--LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLK 123
SST D LK I +Q+EYYFS +NL D ++ + + +GF+PI++IASF +++
Sbjct: 230 SSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRR--KMDSDGFLPITLIASFHRVQ 287
Query: 124 RLTRNHAWIVAALRESSLLVVSSNGKKVKR 153
LT + + I+ AL++S VV +K++R
Sbjct: 288 ALTTDISLIIKALKDSK--VVEIVDQKIRR 315
>UNIPROTKB|F1MZU1 [details] [associations]
symbol:LARP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016239 "positive regulation of macroautophagy"
evidence=IEA] Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016239
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR006607 SMART:SM00684 OMA:GSEPATY
GeneTree:ENSGT00390000000523 EMBL:DAAA02020719 IPI:IPI00714415
PRIDE:F1MZU1 Ensembl:ENSBTAT00000011109 Uniprot:F1MZU1
Length = 951
Score = 137 (53.3 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 42/121 (34%), Positives = 69/121 (57%)
Query: 66 SSTPAVLTDD--LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLK 123
SST D LK I +Q+EYYFS +NL D ++ + + +GF+P+++IASF +++
Sbjct: 246 SSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRR--KMDADGFLPMTLIASFHRVQ 303
Query: 124 RLTRNHAWIVAALRESSLLVVSSNGKKVKRLN-----PLPVTEVRDPKL--FTVLVENLP 176
LT + + I AAL++S ++ + +KV+R PLP + D F+ L+ N P
Sbjct: 304 ALTTDISLIFAALKDSKVVEIVE--EKVRRREEPEKWPLPGPPIVDYSQTDFSQLL-NCP 360
Query: 177 E 177
E
Sbjct: 361 E 361
>SGD|S000002923 [details] [associations]
symbol:SLF1 "RNA binding protein that associates with
polysomes" species:4932 "Saccharomyces cerevisiae" [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0006417 "regulation of translation"
evidence=IGI;IMP;IPI] [GO:0006878 "cellular copper ion homeostasis"
evidence=IMP;IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] SGD:S000002923 GO:GO:0005737
GO:GO:0006417 GO:GO:0006878 EMBL:BK006938 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 EMBL:U33057 RefSeq:NP_010803.3
GeneID:852127 KEGG:sce:YDR515W GO:GO:0005844 KO:K09569
RefSeq:NP_010807.3 GeneID:852131 KEGG:sce:YDR519W
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 EMBL:U30375 EMBL:AY692939 PIR:S59742
ProteinModelPortal:Q12034 SMR:Q12034 DIP:DIP-2938N IntAct:Q12034
MINT:MINT-574898 STRING:Q12034 PaxDb:Q12034 EnsemblFungi:YDR515W
CYGD:YDR515w GeneTree:ENSGT00530000067375 OrthoDB:EOG46MFST
NextBio:970519 Genevestigator:Q12034 GermOnline:YDR515W
Uniprot:Q12034
Length = 447
Score = 120 (47.3 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 23/63 (36%), Positives = 43/63 (68%)
Query: 78 QRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTR--NHAWIVAA 135
+ I Q+E+YFS+ENL TD+++ + +K +GF+P+S+I F ++ L+ + I+A+
Sbjct: 273 ESIKNQIEFYFSEENLKTDEFLRSKFKKANDGFIPMSLIGKFYRMVNLSLGGDPNLILAS 332
Query: 136 LRE 138
+RE
Sbjct: 333 MRE 335
>SGD|S000000542 [details] [associations]
symbol:SRO9 "Cytoplasmic RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0002181 "cytoplasmic translation"
evidence=IPI] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005844 "polysome"
evidence=IDA] SGD:S000000542 GO:GO:0005737 EMBL:X59720
EMBL:BK006937 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723
GO:GO:0002181 GO:GO:0005844 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000067375 OrthoDB:EOG46MFST PIR:S19365
RefSeq:NP_009893.2 ProteinModelPortal:P25567 SMR:P25567
DIP:DIP-6638N IntAct:P25567 MINT:MINT-633857 STRING:P25567
PaxDb:P25567 PeptideAtlas:P25567 EnsemblFungi:YCL037C GeneID:850320
KEGG:sce:YCL037C CYGD:YCL037c HOGENOM:HOG000057093 OMA:VSTISIE
NextBio:965730 Genevestigator:P25567 GermOnline:YCL037C
Uniprot:P25567
Length = 434
Score = 118 (46.6 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 25/61 (40%), Positives = 42/61 (68%)
Query: 80 IIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLT--RNHAWIVAALR 137
I +Q+EYYFS+ENL D Y+ + + +K+GF P+S+I+ F ++ ++ + I+AALR
Sbjct: 265 IARQIEYYFSEENLTVDNYLRSKL--SKDGFAPLSLISKFYRVVNMSFGGDTNLILAALR 322
Query: 138 E 138
E
Sbjct: 323 E 323
>UNIPROTKB|F1MHX7 [details] [associations]
symbol:LARP4B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 OMA:LITPQTW GeneTree:ENSGT00530000063417
EMBL:DAAA02036020 IPI:IPI00688568 UniGene:Bt.45835
Ensembl:ENSBTAT00000018457 NextBio:20867284 Uniprot:F1MHX7
Length = 730
Score = 117 (46.2 bits), Expect = 0.00018, P = 0.00018
Identities = 34/124 (27%), Positives = 65/124 (52%)
Query: 65 NSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKR 124
N S P +D ++ + K +E+ S ENL +D Y+++ + + + +VPI+ +A+ +K+
Sbjct: 143 NDSQPES-QEDPREVLKKTLEFCLSRENLASDMYLIS--QMDSDQYVPITTVANLDHIKK 199
Query: 125 LTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENM 184
L+ + IV LR L+ V G+KV+ P + V++ +PE VE +
Sbjct: 200 LSTDMDLIVEVLRSLPLVQVDEKGEKVR-----P-----NQNRCIVILREIPESTPVEEV 249
Query: 185 QRIF 188
+ +F
Sbjct: 250 EALF 253
>UNIPROTKB|F1P1X0 [details] [associations]
symbol:LARP4B "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 OMA:LITPQTW GeneTree:ENSGT00530000063417
EMBL:AADN02000387 EMBL:AADN02000388 EMBL:AADN02000389
IPI:IPI00596468 Ensembl:ENSGALT00000010791 Uniprot:F1P1X0
Length = 764
Score = 117 (46.2 bits), Expect = 0.00019, P = 0.00019
Identities = 31/115 (26%), Positives = 62/115 (53%)
Query: 74 DDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIV 133
+DL++ + K +E+ S ENL +D Y+++ + + + +VPI +A+ +K+L+ + IV
Sbjct: 180 EDLRELLKKTLEFCLSRENLASDMYLIS--QMDSDQYVPIMTVANLDHVKKLSTDMDLIV 237
Query: 134 AALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIF 188
LR L+ V G+KV+ P + V++ +PE +E ++ +F
Sbjct: 238 EVLRSLPLVQVDEKGEKVR-----P-----NQNRCIVILREVPESTPIEEVEALF 282
>CGD|CAL0005700 [details] [associations]
symbol:SLF1 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
CGD:CAL0005700 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AACQ01000029 EMBL:AACQ01000028 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 RefSeq:XP_719801.1
RefSeq:XP_719918.1 ProteinModelPortal:Q5ADL6 GeneID:3638500
GeneID:3638613 KEGG:cal:CaO19.14118 KEGG:cal:CaO19.6826
eggNOG:NOG317739 HOGENOM:HOG000093975 Uniprot:Q5ADL6
Length = 397
Score = 113 (44.8 bits), Expect = 0.00023, P = 0.00023
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 77 KQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAW---IV 133
K+ I Q+EYYFS ENL D Y+ +L K+ +G + +S + SF +++ LT N + ++
Sbjct: 306 KENIKHQIEYYFSTENLCKDTYLRSLFNKS-DGSIQLSQLLSFNRMRMLTNNGKYTNLVL 364
Query: 134 AALRESSLL--VVSSNGK 149
++ E +L ++ N K
Sbjct: 365 ESIEEIPILELLLDENDK 382
>UNIPROTKB|Q5ADL6 [details] [associations]
symbol:SLF1 "Potential polysome-associated RNA binding
protein" species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
CGD:CAL0005700 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AACQ01000029 EMBL:AACQ01000028 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 RefSeq:XP_719801.1
RefSeq:XP_719918.1 ProteinModelPortal:Q5ADL6 GeneID:3638500
GeneID:3638613 KEGG:cal:CaO19.14118 KEGG:cal:CaO19.6826
eggNOG:NOG317739 HOGENOM:HOG000093975 Uniprot:Q5ADL6
Length = 397
Score = 113 (44.8 bits), Expect = 0.00023, P = 0.00023
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 77 KQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAW---IV 133
K+ I Q+EYYFS ENL D Y+ +L K+ +G + +S + SF +++ LT N + ++
Sbjct: 306 KENIKHQIEYYFSTENLCKDTYLRSLFNKS-DGSIQLSQLLSFNRMRMLTNNGKYTNLVL 364
Query: 134 AALRESSLL--VVSSNGK 149
++ E +L ++ N K
Sbjct: 365 ESIEEIPILELLLDENDK 382
>UNIPROTKB|F1RX46 [details] [associations]
symbol:LARP4B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 SMART:SM00360 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 CTD:23185 OMA:LITPQTW
GeneTree:ENSGT00530000063417 EMBL:FP236728 EMBL:FP340182
RefSeq:XP_003130895.2 Ensembl:ENSSSCT00000012224 GeneID:100522458
KEGG:ssc:100522458 Uniprot:F1RX46
Length = 728
Score = 113 (44.8 bits), Expect = 0.00055, P = 0.00055
Identities = 30/99 (30%), Positives = 56/99 (56%)
Query: 57 EDPIKDHE---NSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPI 113
E P ++ E N S P +D ++ + K +E+ S ENL +D Y+++ + + + +VPI
Sbjct: 132 ESPPENSETGGNESQPEG-QEDPREVLKKTLEFCLSRENLASDMYLIS--QMDSDQYVPI 188
Query: 114 SVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVK 152
+ +A+ +K+L+ + IV LR L+ V G+KV+
Sbjct: 189 TTVANLDHIKKLSTDMDLIVEVLRSLPLVQVDEKGEKVR 227
>RGD|1310713 [details] [associations]
symbol:Larp4b "La ribonucleoprotein domain family, member 4B"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005829 "cytosol" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0042788
"polysomal ribosome" evidence=ISO] [GO:0045727 "positive regulation
of translation" evidence=ISO] InterPro:IPR000504 SMART:SM00360
RGD:1310713 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
IPI:IPI00778075 Ensembl:ENSRNOT00000021346 UCSC:RGD:1310713
ArrayExpress:D4ABE0 Uniprot:D4ABE0
Length = 656
Score = 111 (44.1 bits), Expect = 0.00085, P = 0.00085
Identities = 27/88 (30%), Positives = 51/88 (57%)
Query: 65 NSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKR 124
N S P +D ++ + K +E+ S ENL +D Y+++ + + + +VPI+ +A+ +K+
Sbjct: 148 NESQPES-QEDPREVLKKTLEFCLSRENLASDMYLIS--QMDSDQYVPITTVANLDHIKK 204
Query: 125 LTRNHAWIVAALRESSLLVVSSNGKKVK 152
L+ + IV LR L+ V G+KV+
Sbjct: 205 LSTDVDLIVEVLRSLPLVQVDEKGEKVR 232
>POMBASE|SPAC1527.03 [details] [associations]
symbol:SPAC1527.03 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic
translation" evidence=NAS] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005844 "polysome" evidence=ISO] [GO:0006412
"translation" evidence=ISO] PomBase:SPAC1527.03 GO:GO:0005829
EMBL:CU329670 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723
GO:GO:0002181 GO:GO:0005844 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 HSSP:P05455
OrthoDB:EOG46MFST RefSeq:NP_594554.1 ProteinModelPortal:Q9P6K0
EnsemblFungi:SPAC1527.03.1 GeneID:2541645 KEGG:spo:SPAC1527.03
NextBio:20802738 Uniprot:Q9P6K0
Length = 475
Score = 109 (43.4 bits), Expect = 0.00096, P = 0.00096
Identities = 26/87 (29%), Positives = 49/87 (56%)
Query: 59 PIKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIAS 118
P+ + N P + D++ + Q+EYYFS ENL D ++ + EG+VP++ +AS
Sbjct: 310 PVVVNGNGVNPYLC--DVQAFLTSQLEYYFSIENLCKDMFLRK--HMDDEGYVPLAFLAS 365
Query: 119 FRKLKRLTRNHAWIVAALRESSLLVVS 145
F ++K + + + AA + S ++ V+
Sbjct: 366 FNRIKSFSTDLNLLHAACKASDIIDVA 392
>MGI|MGI:106330 [details] [associations]
symbol:Larp4b "La ribonucleoprotein domain family, member 4B"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0042788 "polysomal ribosome" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 PROSITE:PS50102 SMART:SM00360 MGI:MGI:106330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
HSSP:Q71RC2 CTD:23185 eggNOG:NOG327281 HOGENOM:HOG000004803
OMA:LITPQTW OrthoDB:EOG4FN4HK ChiTaRS:LARP4B EMBL:AK172916
EMBL:AK042491 EMBL:AK080953 EMBL:AK160759 EMBL:BC078640
IPI:IPI00469235 IPI:IPI00620564 IPI:IPI00831428 RefSeq:NP_766173.1
UniGene:Mm.234944 UniGene:Mm.392515 ProteinModelPortal:Q6A0A2
SMR:Q6A0A2 PhosphoSite:Q6A0A2 PaxDb:Q6A0A2 PRIDE:Q6A0A2
Ensembl:ENSMUST00000091829 GeneID:217980 KEGG:mmu:217980
UCSC:uc007pkr.1 UCSC:uc007pks.1 UCSC:uc011ywb.1
GeneTree:ENSGT00530000063417 InParanoid:Q6A0A2 NextBio:376122
Bgee:Q6A0A2 CleanEx:MM_LARP5 Genevestigator:Q6A0A2 Uniprot:Q6A0A2
Length = 741
Score = 111 (44.1 bits), Expect = 0.00099, P = 0.00099
Identities = 27/88 (30%), Positives = 51/88 (57%)
Query: 65 NSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKR 124
N S P +D ++ + K +E+ S ENL +D Y+++ + + + +VPI+ +A+ +K+
Sbjct: 148 NESQPES-QEDPREVLKKTLEFCLSRENLASDMYLIS--QMDSDQYVPITTVANLDHIKK 204
Query: 125 LTRNHAWIVAALRESSLLVVSSNGKKVK 152
L+ + IV LR L+ V G+KV+
Sbjct: 205 LSTDVDLIVEVLRSLPLVQVDEKGEKVR 232
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.132 0.377 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 214 195 0.00078 111 3 11 23 0.38 33
31 0.44 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 90
No. of states in DFA: 582 (62 KB)
Total size of DFA: 150 KB (2091 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.98u 0.18s 19.16t Elapsed: 00:00:01
Total cpu time: 18.98u 0.18s 19.16t Elapsed: 00:00:01
Start: Sat May 11 01:50:33 2013 End: Sat May 11 01:50:34 2013