BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041714
(214 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q05CL8|LARP7_MOUSE La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2
Length = 570
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Query: 80 IIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES 139
I KQV+++F D NL DK++ I K+++G+V IS++ SF K+K+LT + I AL+ S
Sbjct: 32 IAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSS 91
Query: 140 SLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICI 199
S++ + G +++R PL +D + TV VE LP++ + ++R+F + G + I I
Sbjct: 92 SVVELDLEGTRIRRKKPLG-ERPKDEEERTVYVELLPKNVTHSWIERVFGKCGNVVYISI 150
>sp|P33399|LHP1_YEAST La protein homolog OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=LHP1 PE=1 SV=2
Length = 275
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 83/145 (57%), Gaps = 19/145 (13%)
Query: 68 TPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTR 127
TP VL R +KQVE+YFS+ N P D+++ KN +G+VPIS IA+F ++K+ R
Sbjct: 26 TPEVL-----DRCLKQVEFYFSEFNFPYDRFLRTTAEKN-DGWVPISTIATFNRMKKY-R 78
Query: 128 NHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKL----FTVLVENLP-EDHSV- 181
++ ALR S +L VS++G+ VKR PL +T R+ ++ T+ V N P ED
Sbjct: 79 PVDKVIEALRSSEILEVSADGENVKRRVPLDLTAARNARIEQNQRTLAVMNFPHEDVEAS 138
Query: 182 ------ENMQRIFAEAGKIKSICIR 200
EN++ F + G+I + +R
Sbjct: 139 QIPELQENLEAFFKKLGEINQVRLR 163
>sp|Q5XI01|LARP7_RAT La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2
Length = 571
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Query: 80 IIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES 139
I KQV+++F D NL D+++ I K+++G+V IS++ SF K+K+LT + I AL+ S
Sbjct: 33 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSS 92
Query: 140 SLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICI 199
S++ + G +++R PL +D + TV VE LP++ + ++R+F + G + I I
Sbjct: 93 SVVELDLEGTRIRRKKPLG-ERPKDEEERTVYVELLPKNVTHSWIERVFGKCGNVVYISI 151
>sp|Q4R627|LARP7_MACFA La-related protein 7 OS=Macaca fascicularis GN=LARP7 PE=2 SV=1
Length = 581
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Query: 80 IIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES 139
I KQV+++F D NL D+++ I K+++G+V IS++ SF K+K+LT + I ALR S
Sbjct: 38 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSS 97
Query: 140 SLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICI 199
+++ + G +++R PL +D TV VE LP++ + ++R+F + G + I I
Sbjct: 98 AVVELDLEGTRIRRKKPLG-ERPKDEDERTVYVELLPKNVNHSWIERVFGKCGNVVYISI 156
>sp|Q4G0J3|LARP7_HUMAN La-related protein 7 OS=Homo sapiens GN=LARP7 PE=1 SV=1
Length = 582
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Query: 80 IIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES 139
I KQV+++F D NL D+++ I K+++G+V IS++ SF K+K+LT + I ALR S
Sbjct: 38 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSS 97
Query: 140 SLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICI 199
+++ + G +++R PL +D TV VE LP++ + ++R+F + G + I I
Sbjct: 98 AVVELDLEGTRIRRKKPLG-ERPKDEDERTVYVELLPKNVNHSWIERVFGKCGNVVYISI 156
>sp|Q7ZWE3|LARP7_DANRE La-related protein 7 OS=Danio rerio GN=larp7 PE=2 SV=1
Length = 555
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 82/144 (56%), Gaps = 1/144 (0%)
Query: 56 CEDPIKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISV 115
C D + +N L + KQVE++F D NL D++M ++I ++++G++ I+V
Sbjct: 22 CADLSEKKDNEKKKRSRVKQLLSDVKKQVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAV 81
Query: 116 IASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENL 175
+ +F ++K LT + I AL+ S+++ V+ G +++R PL T +D TV VE L
Sbjct: 82 LTTFNRMKNLTADVKLIARALKNSTIVEVNDEGTRIRRKEPLGETP-KDVDSRTVYVELL 140
Query: 176 PEDHSVENMQRIFAEAGKIKSICI 199
P+ + ++R+F++ G + I I
Sbjct: 141 PKTVTHIWLERVFSKCGHVVYISI 164
>sp|Q8BN59|LARP6_MOUSE La-related protein 6 OS=Mus musculus GN=Larp6 PE=1 SV=1
Length = 492
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 91/177 (51%), Gaps = 30/177 (16%)
Query: 57 EDPIKDHENSSTPAVLTD-------------DLKQRIIKQVEYYFSDENLPTDKYMMNLI 103
E+P + H +++T D +L ++++ Q+E+YFSDENL D +++ +
Sbjct: 60 EEPSRGHSSATTSGGENDREDLEPEWRPPDEELIRKLVDQIEFYFSDENLEKDAFLLKHV 119
Query: 104 RKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPV---- 159
R+NK G+V + ++ SF+K+K LTR+ AL+ S L ++ + +KV+R P+P+
Sbjct: 120 RRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNE 179
Query: 160 ------TEVRD----PKLFTVLV---ENLPEDHSVENMQRIFAEAGKIKSICIRDPN 203
V D PKL+ + ++ +E++ ++F G I S+ I P
Sbjct: 180 NLPSKMLLVYDLHLSPKLWALATPQKNGRVQEKVMEHLLKLFGTFGVISSVRILKPG 236
>sp|Q9BRS8|LARP6_HUMAN La-related protein 6 OS=Homo sapiens GN=LARP6 PE=1 SV=1
Length = 491
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 82/147 (55%), Gaps = 17/147 (11%)
Query: 74 DDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIV 133
++L ++++ Q+E+YFSDENL D +++ +R+NK G+V + ++ SF+K+K LTR+
Sbjct: 90 EELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTA 149
Query: 134 AALRESSLLVVSSNGKKVKRLNPLPVTEVRD--------------PKLFTVLV---ENLP 176
AL+ S +L ++ + +KV+R P+P+ + PKL+ +
Sbjct: 150 HALKYSVVLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLYLSPKLWALATPQKNGRV 209
Query: 177 EDHSVENMQRIFAEAGKIKSICIRDPN 203
++ +E++ ++F G I S+ I P
Sbjct: 210 QEKVMEHLLKLFGTFGVISSVRILKPG 236
>sp|Q28G87|LARP7_XENTR La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1
Length = 593
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 9/150 (6%)
Query: 53 HDHCEDPIKDHEN---SSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEG 109
D D KD E S +L D I KQV+++F D NL D+++ I K ++G
Sbjct: 15 EDESTDLRKDREKKKRSRVKQLLAD-----IAKQVDFWFGDVNLHKDRFLREQIEKTRDG 69
Query: 110 FVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFT 169
++ IS++ASF K+K++T + I A++ SS++ ++ +G K++R PL + +D T
Sbjct: 70 YIDISLLASFNKMKKITTDSKLIARAVKNSSVVEINLSGTKIRRRFPLG-EKPQDVDSRT 128
Query: 170 VLVENLPEDHSVENMQRIFAEAGKIKSICI 199
V VE LP++ + ++R+F + G + + I
Sbjct: 129 VYVELLPKNVTHSWIERVFGKYGMVVYVSI 158
>sp|P87058|LAH1_SCHPO La protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=sla1 PE=1 SV=1
Length = 298
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 76/125 (60%), Gaps = 6/125 (4%)
Query: 80 IIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES 139
++KQVE+YFSD NLP DK++ +KN +G+VPI IA+F++++R A IV ALR+S
Sbjct: 67 VLKQVEFYFSDTNLPHDKFLWTTSQKN-DGWVPIQTIANFKRMRRFQPLEA-IVNALRKS 124
Query: 140 -SLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPE--DHSVENMQRIFAE-AGKIK 195
LL V G+KV+R+ PL + + +V + + D + +++ F E AG I
Sbjct: 125 PELLEVDEAGEKVRRMIPLVRVDNKSVMERSVYCKGFGDEKDDTQIALEKFFEENAGPIS 184
Query: 196 SICIR 200
++ +R
Sbjct: 185 AVRMR 189
>sp|P38656|LA_RAT Lupus La protein homolog OS=Rattus norvegicus GN=Ssb PE=2 SV=1
Length = 415
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 78/132 (59%), Gaps = 8/132 (6%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L+ +I Q+EYYF D NLP DK++ I+ + EG+VP+ + F +L RLT + IV A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 136 LRES--SLLVVSSNGKKVKRLNPLPVTEVRDP-----KLFTVLVENLPEDHSVENMQRIF 188
L +S +L+ VS++ K++R P+ EV D K +V ++ P D ++++++
Sbjct: 72 LSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL 131
Query: 189 AEAGKIKSICIR 200
+ G+I +I +R
Sbjct: 132 DDKGQILNIQMR 143
>sp|P05455|LA_HUMAN Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2
Length = 408
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 77/132 (58%), Gaps = 8/132 (6%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L+ +I Q+EYYF D NLP DK++ I+ + EG+VP+ ++ F +L RLT + IV A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 136 LRES--SLLVVSSNGKKVKRLNPLPVTEVRDP-----KLFTVLVENLPEDHSVENMQRIF 188
L +S L+ +S + K++R P+ EV D K +V ++ P D ++++++
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL 131
Query: 189 AEAGKIKSICIR 200
+ G++ +I +R
Sbjct: 132 EDKGQVLNIQMR 143
>sp|P32067|LA_MOUSE Lupus La protein homolog OS=Mus musculus GN=Ssb PE=2 SV=1
Length = 415
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 77/132 (58%), Gaps = 8/132 (6%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L+ +I Q+EYYF D NLP DK++ I+ + EG+VP+ + F +L RLT + IV A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 136 LRES--SLLVVSSNGKKVKRLNPLPVTEVRDP-----KLFTVLVENLPEDHSVENMQRIF 188
L +S L+ VS++ K++R P+ EV D K +V ++ P D ++++++
Sbjct: 72 LSKSKAKLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL 131
Query: 189 AEAGKIKSICIR 200
+ G+I +I +R
Sbjct: 132 DDKGQILNIQMR 143
>sp|P10881|LA_BOVIN Lupus La protein homolog OS=Bos taurus GN=SSB PE=2 SV=2
Length = 404
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 77/132 (58%), Gaps = 8/132 (6%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L+ +I Q+EYYF D NLP DK++ I+ + EG+VP+ ++ F +L RLT + IV A
Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 136 LRESS--LLVVSSNGKKVKRLNPLPVTEVRDP-----KLFTVLVENLPEDHSVENMQRIF 188
L +S L+ +S + K++R P+ EV D K +V ++ P D ++++++
Sbjct: 72 LSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDAALDDIKEWL 131
Query: 189 AEAGKIKSICIR 200
+ G++ +I +R
Sbjct: 132 EDKGQVLNIQMR 143
>sp|Q8BWW4|LARP4_MOUSE La-related protein 4 OS=Mus musculus GN=Larp4 PE=1 SV=2
Length = 719
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 72/129 (55%), Gaps = 12/129 (9%)
Query: 60 IKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASF 119
+ D S+ A+ T+DLK+ + KQ+E+ FS ENL D Y+++ + ++ FVPI +A+
Sbjct: 99 LYDVSGESSSAISTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQ--FVPIWTVANM 156
Query: 120 RKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDH 179
++K+LT N I+ LR S ++ V G+KV+ + K V++ +PE
Sbjct: 157 EEIKKLTTNTDLILEVLRSSPMVQVDEKGEKVRPSH----------KRCIVILREIPETT 206
Query: 180 SVENMQRIF 188
VE ++ +F
Sbjct: 207 PVEEVKALF 215
>sp|P40796|LA_DROME La protein homolog OS=Drosophila melanogaster GN=La PE=1 SV=2
Length = 390
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 71/128 (55%), Gaps = 7/128 (5%)
Query: 80 IIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALR-- 137
II+QVEYYF D NL DK++ I KN++G+VP+SV+ +F++L L+ + + IVAAL
Sbjct: 54 IIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKS 113
Query: 138 ESSLLVVSSNGKKVKRLNPLPVTE-----VRDPKLFTVLVENLPEDHSVENMQRIFAEAG 192
E L+ +S + ++R P+ E ++ + T + P D + + A
Sbjct: 114 EEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGFPLDSQISELLDFAANYD 173
Query: 193 KIKSICIR 200
K+ ++ +R
Sbjct: 174 KVVNLTMR 181
>sp|Q71RC2|LARP4_HUMAN La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1 SV=3
Length = 724
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 71/129 (55%), Gaps = 12/129 (9%)
Query: 60 IKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASF 119
I D S AV T+DLK+ + KQ+E+ FS ENL D Y+++ + ++ F+PI +A+
Sbjct: 103 IYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQ--FIPIWTVANM 160
Query: 120 RKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDH 179
++K+LT + I+ LR S ++ V G+KV+ + K V++ +PE
Sbjct: 161 EEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSH----------KRCIVILREIPETT 210
Query: 180 SVENMQRIF 188
+E ++ +F
Sbjct: 211 PIEEVKGLF 219
>sp|Q26457|LA_AEDAL La protein homolog OS=Aedes albopictus PE=1 SV=1
Length = 383
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 56/87 (64%), Gaps = 5/87 (5%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
L+ I+Q+EYYF D NL DK++ I K+ EG+VP+ V+ +F++LK L+ + IV A
Sbjct: 43 LEASTIRQLEYYFGDANLARDKFLQEQISKD-EGWVPVDVLLTFKRLKSLSEDKKVIVDA 101
Query: 136 LRES--SLLVVSSNGKKVKR--LNPLP 158
+ +S L+ VS + +K++R PLP
Sbjct: 102 IEKSDEGLIEVSEDREKLRRHPERPLP 128
>sp|P28048|LAA_XENLA Lupus La protein homolog A OS=Xenopus laevis GN=ssb-a PE=2 SV=1
Length = 428
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 76/144 (52%), Gaps = 10/144 (6%)
Query: 64 ENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLK 123
EN L D K I +Q+EYYF D NLP DK++ I + +G+VP+ + F +L
Sbjct: 3 ENGDKEQKLDSDTK--ICEQIEYYFGDHNLPRDKFLKQQILLD-DGWVPLETMIKFNRLS 59
Query: 124 RLTRNHAWIVAALRESS--LLVVSSNGKKVKRLNPLPVTEVRDP-----KLFTVLVENLP 176
+LT + I+ AL++S LL ++ K++R P+ E+ D K +V ++ P
Sbjct: 60 KLTTDFNTILQALKKSKTELLEINEEKCKIRRSPAKPLPELNDEYKNSLKHKSVYIKGFP 119
Query: 177 EDHSVENMQRIFAEAGKIKSICIR 200
+++++ + G I++I +R
Sbjct: 120 TSAILDDVKEWLKDKGPIENIQMR 143
>sp|Q9VAW5|LARP_DROME La-related protein OS=Drosophila melanogaster GN=larp PE=1 SV=5
Length = 1673
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 10/120 (8%)
Query: 74 DDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIV 133
+ +K+ I KQVEYYFS +NL D ++ + + EG++P+++IASF ++ LT + A IV
Sbjct: 727 NSIKEAIKKQVEYYFSVDNLTGDFFLRRKM--DPEGYIPVTLIASFHRVLALTTDVAVIV 784
Query: 134 AALRESSLLVVSSNGKKVKRLNP--LPVTEV-----RDPKLFTVL-VENLPEDHSVENMQ 185
A++ES L + K + P P+TEV +PK L E L ++ E ++
Sbjct: 785 NAIKESDKLELFEGYKVRTKTTPTTWPITEVPEVNEGEPKAIGTLEQEQLEQNDGQEKLE 844
>sp|P28049|LAB_XENLA Lupus La protein homolog B OS=Xenopus laevis GN=ssb-b PE=2 SV=1
Length = 427
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 73/133 (54%), Gaps = 8/133 (6%)
Query: 75 DLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVA 134
DL +I +Q+EYYF D NLP DK++ + + G+VP+ + F +L +LT + I+
Sbjct: 11 DLDTKICEQIEYYFGDHNLPRDKFLKQQVLLD-NGWVPLETMIKFNRLSKLTTDFNIILQ 69
Query: 135 ALRESS--LLVVSSNGKKVKRLNPLPVTEVRDP-----KLFTVLVENLPEDHSVENMQRI 187
AL++S LL ++ K++R P+ E+ + K +V ++ P +++ ++
Sbjct: 70 ALKKSKTELLEINEEKCKIRRSPAKPLPELNEDYKNSFKHRSVYIKGFPTITNLDEIKEW 129
Query: 188 FAEAGKIKSICIR 200
+ G I++I +R
Sbjct: 130 LNDKGPIENIQMR 142
>sp|Q659C4|LAR1B_HUMAN La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2
Length = 914
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
LK+ I +Q+EYYFS ENL D ++ + +++GF+PIS+IA F++++ LT N I+ A
Sbjct: 215 LKEYIKRQIEYYFSVENLERDFFLRGKM--DEQGFLPISLIAGFQRVQALTTNLNLILEA 272
Query: 136 LRESS 140
L++S+
Sbjct: 273 LKDST 277
>sp|Q9I7T7|Y1505_DROME La-related protein CG11505 OS=Drosophila melanogaster GN=CG11505
PE=1 SV=2
Length = 1531
Score = 56.6 bits (135), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 58 DPIKDHENSS---TPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPIS 114
DP + N++ P + D LKQ + Q+EYYFS ENL D Y+++ + + + +VPI
Sbjct: 247 DPQQGSHNAAGGEEPNIPLDKLKQMLATQLEYYFSRENLANDTYLLS--QMDSDQYVPIY 304
Query: 115 VIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVK 152
+A F +++LT + I LRES + V G +V+
Sbjct: 305 TVARFNLVRKLTNDINLITEVLRESPNVQVDDKGLRVR 342
>sp|Q6ZQ58|LARP1_MOUSE La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=2
Length = 1072
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 52/78 (66%), Gaps = 4/78 (5%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
LK I +Q+EYYFS +NL D ++ + + +GF+PI++IASF +++ LT + + I AA
Sbjct: 378 LKDYIKRQIEYYFSVDNLERDFFLRRKM--DADGFLPITLIASFHRVQALTTDISLIFAA 435
Query: 136 LRESSLLVVSSNGKKVKR 153
L++S VV +KV+R
Sbjct: 436 LKDSK--VVEMVEEKVRR 451
>sp|Q6PKG0|LARP1_HUMAN La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2
Length = 1096
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 76 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAA 135
LK I +Q+EYYFS +NL D ++ + + +GF+PI++IASF +++ LT + + I AA
Sbjct: 403 LKDYIKRQIEYYFSVDNLERDFFLRRKM--DADGFLPITLIASFHRVQALTTDISLIFAA 460
Query: 136 LRESSLLVV 144
L++S ++ +
Sbjct: 461 LKDSKVVEI 469
>sp|Q12034|SLF1_YEAST Protein SLF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SLF1 PE=1 SV=1
Length = 447
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 78 QRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNH--AWIVAA 135
+ I Q+E+YFS+ENL TD+++ + +K +GF+P+S+I F ++ L+ I+A+
Sbjct: 273 ESIKNQIEFYFSEENLKTDEFLRSKFKKANDGFIPMSLIGKFYRMVNLSLGGDPNLILAS 332
Query: 136 LRE 138
+RE
Sbjct: 333 MRE 335
>sp|P25567|SRO9_YEAST RNA-binding protein SRO9 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SRO9 PE=1 SV=2
Length = 434
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 42/61 (68%), Gaps = 4/61 (6%)
Query: 80 IIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLT--RNHAWIVAALR 137
I +Q+EYYFS+ENL D Y+ + + +K+GF P+S+I+ F ++ ++ + I+AALR
Sbjct: 265 IARQIEYYFSEENLTVDNYLRSKL--SKDGFAPLSLISKFYRVVNMSFGGDTNLILAALR 322
Query: 138 E 138
E
Sbjct: 323 E 323
>sp|Q9P6K0|YLA3_SCHPO Uncharacterized HTH La-type RNA-binding protein C1527.03
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC1527.03 PE=1 SV=1
Length = 475
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 75 DLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVA 134
D++ + Q+EYYFS ENL D ++ + + EG+VP++ +ASF ++K + + + A
Sbjct: 324 DVQAFLTSQLEYYFSIENLCKDMFLRKHM--DDEGYVPLAFLASFNRIKSFSTDLNLLHA 381
Query: 135 ALRESSLLVVS 145
A + S ++ V+
Sbjct: 382 ACKASDIIDVA 392
>sp|Q6A0A2|LAR4B_MOUSE La-related protein 4B OS=Mus musculus GN=Larp4b PE=1 SV=2
Length = 741
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 74 DDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIV 133
+D ++ + K +E+ S ENL +D Y+++ + + + +VPI+ +A+ +K+L+ + IV
Sbjct: 156 EDPREVLKKTLEFCLSRENLASDMYLISQM--DSDQYVPITTVANLDHIKKLSTDVDLIV 213
Query: 134 AALRESSLLVVSSNGKKVK 152
LR L+ V G+KV+
Sbjct: 214 EVLRSLPLVQVDEKGEKVR 232
>sp|Q92615|LAR4B_HUMAN La-related protein 4B OS=Homo sapiens GN=LARP4B PE=1 SV=3
Length = 738
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 74 DDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIV 133
+D ++ + K +E+ S ENL +D Y+++ + ++ +VPI+ +A+ +K+L+ + IV
Sbjct: 154 EDPREVLKKTLEFCLSRENLASDMYLISQMDSDQ--YVPITTVANLDHIKKLSTDVDLIV 211
Query: 134 AALRESSLLVVSSNGKKVK 152
LR L+ V G+KV+
Sbjct: 212 EVLRSLPLVQVDEKGEKVR 230
>sp|A1VYJ5|RPOC_CAMJJ DNA-directed RNA polymerase subunit beta' OS=Campylobacter jejuni
subsp. jejuni serotype O:23/36 (strain 81-176) GN=rpoC
PE=3 SV=1
Length = 1517
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 25 LDPDFSPVGSPEHDIPDVPVPPSDDDHDHDHCEDPIKDHENSSTPAVLTDDLKQRIIKQV 84
L +++ I D+ VP +D D + +++ +NS ++T +R K +
Sbjct: 636 LGFEYATKAGISISIADIIVP-NDKQKAIDEAKKQVREIQNSYNLGLITSG--ERYNKII 692
Query: 85 EYYFSDENLPTDKYMMNLIRKNKEGFVPISVIA 117
+ + S N+ + K MM L+ K+KEGF I ++A
Sbjct: 693 DIWKSTNNVLS-KEMMKLVEKDKEGFNSIYMMA 724
>sp|Q9PI30|RPOC_CAMJE DNA-directed RNA polymerase subunit beta' OS=Campylobacter jejuni
subsp. jejuni serotype O:2 (strain NCTC 11168) GN=rpoC
PE=3 SV=1
Length = 1517
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 25 LDPDFSPVGSPEHDIPDVPVPPSDDDHDHDHCEDPIKDHENSSTPAVLTDDLKQRIIKQV 84
L +++ I D+ VP +D D + +++ +NS ++T +R K +
Sbjct: 636 LGFEYATKAGISISIADIIVP-NDKQKAIDEAKKQVREIQNSYNLGLITSG--ERYNKII 692
Query: 85 EYYFSDENLPTDKYMMNLIRKNKEGFVPISVIA 117
+ + S N+ + K MM L+ K+KEGF I ++A
Sbjct: 693 DIWKSTNNVLS-KEMMKLVEKDKEGFNSIYMMA 724
>sp|A8FKR4|RPOC_CAMJ8 DNA-directed RNA polymerase subunit beta' OS=Campylobacter jejuni
subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828)
GN=rpoC PE=3 SV=1
Length = 1517
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 25 LDPDFSPVGSPEHDIPDVPVPPSDDDHDHDHCEDPIKDHENSSTPAVLTDDLKQRIIKQV 84
L +++ I D+ VP +D D + +++ +NS ++T +R K +
Sbjct: 636 LGFEYATKAGISISIADIIVP-NDKQKAIDEAKKQVREIQNSYNLGLITSG--ERYNKII 692
Query: 85 EYYFSDENLPTDKYMMNLIRKNKEGFVPISVIA 117
+ + S N+ + K MM L+ K+KEGF I ++A
Sbjct: 693 DIWKSTNNVLS-KEMMKLVEKDKEGFNSIYMMA 724
>sp|Q5HVY8|RPOC_CAMJR DNA-directed RNA polymerase subunit beta' OS=Campylobacter jejuni
(strain RM1221) GN=rpoC PE=3 SV=1
Length = 1517
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 25 LDPDFSPVGSPEHDIPDVPVPPSDDDHDHDHCEDPIKDHENSSTPAVLTDDLKQRIIKQV 84
L +++ I D+ VP +D D + +++ +NS ++T +R K +
Sbjct: 636 LGFEYATKAGISISIADIIVP-NDKQKAIDEAKKQVREIQNSYNLGLITSG--ERYNKII 692
Query: 85 EYYFSDENLPTDKYMMNLIRKNKEGFVPISVIA 117
+ + S N+ + K MM L+ K+KEGF I ++A
Sbjct: 693 DIWKSTNNVLS-KEMMKLVEKDKEGFNSIYMMA 724
>sp|B9KFG8|RPOC_CAMLR DNA-directed RNA polymerase subunit beta' OS=Campylobacter lari
(strain RM2100 / D67 / ATCC BAA-1060) GN=rpoC PE=3 SV=1
Length = 1517
Score = 34.3 bits (77), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 25 LDPDFSPVGSPEHDIPDVPVPPSDDDHDHDHCEDPIKDHENSSTPAVLTDDLKQRIIKQV 84
L +++ I D+ VP + D + +++ +NS ++T +R K +
Sbjct: 636 LGFEYATKAGISISIADIIVP-DQKQKNIDEAKKQVREIQNSYNLGLITSG--ERYNKII 692
Query: 85 EYYFSDENLPTDKYMMNLIRKNKEGFVPISVIA 117
+ + S N+ + K MM LI+K+KEGF I ++A
Sbjct: 693 DIWKSTNNILS-KDMMELIKKDKEGFNSIYMMA 724
>sp|Q8BHR2|ENOX1_MOUSE Ecto-NOX disulfide-thiol exchanger 1 OS=Mus musculus GN=Enox1 PE=1
SV=1
Length = 643
Score = 33.5 bits (75), Expect = 1.0, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 156 PLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSI 197
P P T R P TV V LPE+ + E +Q +F + G I +I
Sbjct: 130 PPPSTRERPPGCKTVFVGGLPENATEEIIQEVFEQCGDITAI 171
>sp|Q8TC92|ENOX1_HUMAN Ecto-NOX disulfide-thiol exchanger 1 OS=Homo sapiens GN=ENOX1 PE=1
SV=1
Length = 643
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 156 PLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSI 197
P P T R P TV V LPE+ + E +Q +F + G I +I
Sbjct: 130 PPPSTRERPPGCKTVFVGGLPENATEEIIQEVFEQCGDITAI 171
>sp|Q9C5Q8|HEN1_ARATH Small RNA 2'-O-methyltransferase OS=Arabidopsis thaliana GN=HEN1
PE=1 SV=1
Length = 942
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 71 VLTDDLKQRIIKQVEYYFSDENL----PTDKYMMNLIRKNKE--GFVPISVIAS 118
+ D+ + I+ +++Y FSDE L P ++ +R++ E G VP+SVIA+
Sbjct: 94 LTVDEARDEIVGRIKYIFSDEFLSAEHPLGAHLRAALRRDGERCGSVPVSVIAT 147
>sp|P12539|PKG1_ADEM1 Packaging protein 1 OS=Murine adenovirus A serotype 1 GN=IVa2 PE=2
SV=2
Length = 449
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 157 LPVTEVRDPKLFTVLVENLPEDHS--VENMQRIFAEAGKIKSICIRDPNVVEESKKKQQI 214
+P + P+L T+ ++L DH+ V + Q IFA+A + ICI +EE K + I
Sbjct: 230 VPKSGTLKPRLITLTYDDLTADHNYDVTHPQNIFAQAAQRGPICIIVDECMEELGKHKSI 289
>sp|Q54BT5|ABCA3_DICDI ABC transporter A family member 3 OS=Dictyostelium discoideum
GN=abcA3 PE=3 SV=1
Length = 1702
Score = 31.6 bits (70), Expect = 4.1, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 43 PVPPSDDDHDHDHCEDPIKDHENSSTPAVLTDDLK 77
P PPSD+D D H + E S+ P ++ D K
Sbjct: 1265 PPPPSDEDSDVSHERSKVLSFETSNDPIIMRDFFK 1299
>sp|Q9USY2|YOW4_SCHPO Uncharacterized RNA-binding protein C1861.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1861.04c PE=4 SV=1
Length = 1014
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 158 PVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPN 203
P+ + R+ + TVLV NLP D S ++ F + G I I I + N
Sbjct: 580 PIEQHRNREELTVLVTNLPSDISENELKIFFKDCGNIIRIFILEDN 625
>sp|Q5BL50|AT8B1_XENTR Probable phospholipid-transporting ATPase IC OS=Xenopus tropicalis
GN=atp8b1 PE=2 SV=1
Length = 1250
Score = 31.2 bits (69), Expect = 4.9, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 19/116 (16%)
Query: 25 LDPDFSPVGSPEHDIPDVPVPPSDDDHDHDHCEDPIKDHENSSTPAVLTDDLKQRIIKQV 84
+D D+ + +P+ V P DD D + P D + V + ++ +IK+
Sbjct: 1 MDTDYESTYEDDSQVPNDDVVPYSDDETDDELDSPQTDEPEQNRRNVQAEQSREPVIKEC 60
Query: 85 EYYF--SDEN--------------LPTDKYMMNLIRKNKEG---FVPISVIASFRK 121
+ +D N L KY N I+ K F+P+++ F++
Sbjct: 61 TWQVKANDRNFYDQPEFKKKVFLCLKKSKYAGNAIKTYKYNPITFLPVNLYEQFKR 116
>sp|Q9Y7Y3|YGR4_SCHPO Uncharacterized RNA-binding protein C365.04c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC365.04c PE=4 SV=1
Length = 233
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 170 VLVENLPEDHSVENMQRIFAEAGKIKSICI 199
+ V NLP+D SVE +Q F AG++ S+ I
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRI 123
>sp|A6Q6I3|RPOC_SULNB DNA-directed RNA polymerase subunit beta' OS=Sulfurovum sp. (strain
NBC37-1) GN=rpoC PE=3 SV=1
Length = 1509
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 39 IPDVPVPPSDDDHDHDHCEDPIKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKY 98
+ D+ +P + ++ +K+ + +LTD ++R K ++ + +D N +
Sbjct: 642 VDDIKIPEMKEGRVQT-AKEQVKEIQRQYAAGLLTD--QERYNKIIDIW-TDANNSIAEA 697
Query: 99 MMNLIRKNKEGFVPISVIA 117
+M+LIRK+K+GF + ++A
Sbjct: 698 LMDLIRKDKDGFNSVHMMA 716
>sp|A1A5H6|CNOT1_DANRE CCR4-NOT transcription complex subunit 1 OS=Danio rerio GN=cnot1 PE=2
SV=1
Length = 2374
Score = 30.4 bits (67), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 61/157 (38%), Gaps = 6/157 (3%)
Query: 31 PVGSPEHDIPDVPVPPSDDDHDHDHCEDPIKDHENSSTPAVLTDDLKQRIIKQVEYYFSD 90
P G + P D H ++ C ++ H ++ PA+ + Q I +E
Sbjct: 1589 PTGFLAQPMKQQAWPTDDVAHIYEKCISDLEQHLHAIPPALAMNPQTQAIRSLLEAVVMA 1648
Query: 91 ENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKK 150
N + L++K EG + + A L H ++ AL++ K+
Sbjct: 1649 RNSRDGIAALGLLQKAVEGLLDATSGADPELLLSYRECHLLVLKALQDGRAYGPQWCNKQ 1708
Query: 151 VKRLNPLPVTEVRDPKLFTV-LVENLPEDHSVENMQR 186
+ R + E RD + V VE L +H V NMQ+
Sbjct: 1709 ITRC----LIECRDEYKYNVEAVELLIRNHLV-NMQQ 1740
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,202,635
Number of Sequences: 539616
Number of extensions: 3864927
Number of successful extensions: 11667
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 11388
Number of HSP's gapped (non-prelim): 263
length of query: 214
length of database: 191,569,459
effective HSP length: 113
effective length of query: 101
effective length of database: 130,592,851
effective search space: 13189877951
effective search space used: 13189877951
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)