Query 041714
Match_columns 214
No_of_seqs 177 out of 749
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 16:55:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041714.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041714hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2voo_A Lupus LA protein; RNA-b 100.0 2.3E-36 7.8E-41 252.4 12.7 140 70-212 6-152 (193)
2 1s29_A LA protein; winged heli 100.0 6.4E-36 2.2E-40 226.6 8.1 88 71-158 5-92 (92)
3 2cqk_A C-MPL binding protein; 100.0 4.9E-34 1.7E-38 219.6 7.1 90 69-160 7-96 (101)
4 1s79_A Lupus LA protein; RRM, 98.2 1.8E-06 6.1E-11 64.6 6.1 46 164-211 8-53 (103)
5 3s7r_A Heterogeneous nuclear r 98.1 3.6E-06 1.2E-10 59.5 5.8 44 165-208 9-52 (87)
6 4fxv_A ELAV-like protein 1; RN 98.1 3.1E-06 1.1E-10 62.5 5.6 43 166-208 18-60 (99)
7 2lxi_A RNA-binding protein 10; 98.1 1.8E-06 6.3E-11 62.7 3.4 41 168-208 2-43 (91)
8 4a8x_A RNA-binding protein wit 98.1 3.6E-06 1.2E-10 59.3 4.6 46 166-211 3-48 (88)
9 1uaw_A Mouse-musashi-1; RNP-ty 98.0 3.9E-06 1.3E-10 57.8 4.1 40 168-207 1-40 (77)
10 3ucg_A Polyadenylate-binding p 98.0 7.6E-06 2.6E-10 57.8 5.7 43 166-208 5-47 (89)
11 2dgp_A Bruno-like 4, RNA bindi 98.0 1.1E-05 3.6E-10 59.1 6.2 44 164-207 10-53 (106)
12 2cqd_A RNA-binding region cont 98.0 1.2E-05 4.2E-10 59.9 6.5 45 164-208 14-58 (116)
13 3mdf_A Peptidyl-prolyl CIS-tra 98.0 7.6E-06 2.6E-10 57.3 5.0 43 165-207 5-47 (85)
14 3bs9_A Nucleolysin TIA-1 isofo 98.0 1.1E-05 3.7E-10 56.8 5.5 42 166-207 5-46 (87)
15 2cq4_A RNA binding motif prote 98.0 8.1E-06 2.8E-10 60.8 5.1 42 166-207 24-65 (114)
16 2dgs_A DAZ-associated protein 98.0 1.4E-05 4.8E-10 57.9 6.1 43 165-207 8-50 (99)
17 1whw_A Hypothetical protein ri 98.0 1.4E-05 4.9E-10 57.7 6.0 43 165-207 6-48 (99)
18 2khc_A Testis-specific RNP-typ 97.9 1.2E-05 4.1E-10 60.1 5.7 44 164-207 37-80 (118)
19 2e5h_A Zinc finger CCHC-type a 97.9 1.4E-05 4.7E-10 57.2 5.7 43 165-207 14-56 (94)
20 2cqg_A TDP-43, TAR DNA-binding 97.9 1.5E-05 5E-10 58.2 6.0 43 165-207 13-55 (103)
21 2rs2_A Musashi-1, RNA-binding 97.9 1.1E-05 3.9E-10 60.1 5.4 44 165-208 23-66 (109)
22 3md1_A Nuclear and cytoplasmic 97.9 1.3E-05 4.3E-10 55.9 5.2 41 168-208 2-42 (83)
23 2dnz_A Probable RNA-binding pr 97.9 1.9E-05 6.4E-10 56.5 6.2 42 166-207 4-45 (95)
24 3s8s_A Histone-lysine N-methyl 97.9 1.4E-05 4.9E-10 60.2 5.8 43 166-208 5-47 (110)
25 2lkz_A RNA-binding protein 5; 97.9 8.9E-06 3.1E-10 60.1 4.4 43 166-208 8-52 (95)
26 2dh8_A DAZ-associated protein 97.9 1.3E-05 4.4E-10 58.7 5.2 43 165-207 14-56 (105)
27 1x5s_A Cold-inducible RNA-bind 97.9 1.7E-05 6E-10 57.5 5.9 43 165-207 10-52 (102)
28 2x1f_A MRNA 3'-END-processing 97.9 1.6E-05 5.4E-10 57.4 5.5 41 167-207 2-42 (96)
29 1p27_B RNA-binding protein 8A; 97.9 1.9E-05 6.4E-10 57.8 5.8 43 165-207 21-63 (106)
30 2cqc_A Arginine/serine-rich sp 97.9 1.8E-05 6E-10 56.5 5.6 42 166-207 14-55 (95)
31 1x4h_A RNA-binding protein 28; 97.9 1.8E-05 6.3E-10 58.2 5.8 42 166-207 14-55 (111)
32 2cqi_A Nucleolysin TIAR; RNA r 97.9 2.5E-05 8.4E-10 56.9 6.4 41 165-205 13-53 (103)
33 1x4e_A RNA binding motif, sing 97.9 1.4E-05 4.6E-10 56.3 4.8 43 166-208 4-46 (85)
34 2cpz_A CUG triplet repeat RNA- 97.9 1.7E-05 5.9E-10 59.0 5.6 43 165-207 23-65 (115)
35 2cph_A RNA binding motif prote 97.9 2E-05 6.8E-10 57.6 5.8 44 164-207 12-56 (107)
36 3md3_A Nuclear and cytoplasmic 97.9 5E-05 1.7E-09 58.1 8.3 80 127-208 49-128 (166)
37 1x5u_A Splicing factor 3B subu 97.9 2.3E-05 7.9E-10 57.2 6.0 43 165-207 13-55 (105)
38 2dgo_A Cytotoxic granule-assoc 97.9 2.3E-05 7.8E-10 58.2 6.1 43 165-207 13-55 (115)
39 4f02_A Polyadenylate-binding p 97.9 1.5E-05 5.2E-10 65.5 5.6 42 167-208 15-56 (213)
40 2ki2_A SS-DNA binding protein 97.9 6.5E-06 2.2E-10 58.5 2.9 41 168-208 2-42 (90)
41 2dnm_A SRP46 splicing factor; 97.9 2.3E-05 8E-10 57.1 5.9 42 166-207 12-53 (103)
42 1iqt_A AUF1, heterogeneous nuc 97.9 1.1E-05 3.8E-10 55.3 3.9 39 169-207 1-39 (75)
43 1u6f_A Tcubp1, RNA-binding pro 97.9 2.4E-05 8.1E-10 60.0 6.2 44 164-207 39-82 (139)
44 2div_A TRNA selenocysteine ass 97.9 2.3E-05 7.8E-10 56.6 5.7 43 166-208 8-51 (99)
45 1sjq_A Polypyrimidine tract-bi 97.9 2.3E-05 7.8E-10 59.7 5.9 38 165-202 14-51 (105)
46 1x4b_A Heterogeneous nuclear r 97.9 1.8E-05 6.2E-10 59.0 5.2 41 167-207 27-67 (116)
47 1oo0_B CG8781-PA, drosophila Y 97.8 2.5E-05 8.6E-10 57.5 5.9 43 165-207 24-66 (110)
48 2ywk_A Putative RNA-binding pr 97.8 2.6E-05 8.8E-10 55.8 5.7 40 165-204 14-53 (95)
49 2do4_A Squamous cell carcinoma 97.8 2.5E-05 8.4E-10 56.7 5.5 39 165-203 15-53 (100)
50 1wi8_A EIF-4B, eukaryotic tran 97.8 3.1E-05 1.1E-09 56.6 6.1 39 166-205 14-52 (104)
51 2la6_A RNA-binding protein FUS 97.8 3.3E-05 1.1E-09 56.0 6.2 43 165-207 11-61 (99)
52 2cq0_A Eukaryotic translation 97.8 1.9E-05 6.5E-10 57.6 4.8 43 165-207 13-55 (103)
53 3ns6_A Eukaryotic translation 97.8 7.6E-06 2.6E-10 60.1 2.7 42 167-208 6-53 (100)
54 3r27_A HnRNP L, heterogeneous 97.8 2.6E-05 9.1E-10 58.9 5.7 36 167-202 21-56 (100)
55 2dnh_A Bruno-like 5, RNA bindi 97.8 3.3E-05 1.1E-09 56.3 6.0 39 165-203 13-51 (105)
56 2xs2_A Deleted in azoospermia- 97.8 2.7E-05 9.2E-10 56.6 5.4 38 166-203 8-45 (102)
57 2cqb_A Peptidyl-prolyl CIS-tra 97.8 2.1E-05 7.3E-10 57.1 4.9 42 166-207 11-52 (102)
58 1h2v_Z 20 kDa nuclear CAP bind 97.8 3.4E-05 1.2E-09 60.5 6.3 42 166-207 38-79 (156)
59 1p1t_A Cleavage stimulation fa 97.8 1.5E-05 5.3E-10 57.9 4.1 42 166-207 7-48 (104)
60 3p5t_L Cleavage and polyadenyl 97.8 1.7E-05 5.6E-10 56.9 3.9 41 168-208 2-44 (90)
61 2mss_A Protein (musashi1); RNA 97.8 1.9E-05 6.4E-10 54.2 4.1 39 169-207 1-39 (75)
62 1x5t_A Splicing factor 3B subu 97.8 1.9E-05 6.4E-10 56.6 4.2 41 167-207 5-46 (96)
63 2jrs_A RNA-binding protein 39; 97.8 2.6E-05 9E-10 58.1 5.1 43 165-207 24-66 (108)
64 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.8 4.2E-05 1.4E-09 58.2 6.4 43 165-207 61-103 (140)
65 1l3k_A Heterogeneous nuclear r 97.8 8.8E-05 3E-09 58.7 8.5 80 127-207 63-144 (196)
66 3ex7_B RNA-binding protein 8A; 97.8 3.9E-05 1.3E-09 57.8 6.0 44 165-208 20-63 (126)
67 2cpe_A RNA-binding protein EWS 97.8 3.4E-05 1.2E-09 57.1 5.6 45 164-208 12-64 (113)
68 2cq3_A RNA-binding protein 9; 97.8 5.3E-05 1.8E-09 55.1 6.4 39 165-203 13-51 (103)
69 2jwn_A Embryonic polyadenylate 97.8 2E-05 6.8E-10 59.3 4.1 43 166-208 35-77 (124)
70 3ulh_A THO complex subunit 4; 97.7 3.5E-05 1.2E-09 56.4 5.2 41 166-207 28-68 (107)
71 2fy1_A RNA-binding motif prote 97.7 4.6E-05 1.6E-09 57.5 5.9 38 166-203 6-43 (116)
72 1b7f_A Protein (SXL-lethal pro 97.7 0.00012 4.1E-09 56.4 8.4 77 127-207 53-129 (168)
73 1wf0_A TDP-43, TAR DNA-binding 97.7 2.9E-05 9.9E-10 55.1 4.4 36 167-202 5-40 (88)
74 4f25_A Polyadenylate-binding p 97.7 3E-05 1E-09 58.3 4.7 38 167-204 5-42 (115)
75 2cpf_A RNA binding motif prote 97.7 2.9E-05 9.8E-10 56.0 4.2 38 167-204 5-42 (98)
76 2ytc_A PRE-mRNA-splicing facto 97.7 5.4E-05 1.8E-09 53.0 5.4 39 164-202 9-47 (85)
77 2g4b_A Splicing factor U2AF 65 97.7 0.00013 4.4E-09 56.5 8.1 76 127-207 59-134 (172)
78 1fxl_A Paraneoplastic encephal 97.7 0.00015 5.2E-09 55.5 8.4 77 127-207 52-128 (167)
79 2dnp_A RNA-binding protein 14; 97.7 5.8E-05 2E-09 53.7 5.5 38 165-202 7-44 (90)
80 1l3k_A Heterogeneous nuclear r 97.7 5.2E-05 1.8E-09 60.1 5.8 44 165-208 11-54 (196)
81 2kxn_B Transformer-2 protein h 97.7 6.6E-05 2.3E-09 57.9 6.2 43 165-207 44-86 (129)
82 1wex_A Hypothetical protein (r 97.7 5.1E-05 1.7E-09 56.9 5.4 36 167-202 15-50 (104)
83 2m2b_A RNA-binding protein 10; 97.7 3.6E-05 1.2E-09 59.0 4.6 44 165-208 21-66 (131)
84 1x5o_A RNA binding motif, sing 97.7 4.6E-05 1.6E-09 56.5 5.0 39 165-203 23-61 (114)
85 2dhg_A TRNA selenocysteine ass 97.7 6.5E-05 2.2E-09 54.6 5.7 41 166-207 8-49 (104)
86 2cq1_A PTB-like protein L; RRM 97.7 4.2E-05 1.4E-09 57.2 4.6 36 167-202 15-50 (101)
87 2dis_A Unnamed protein product 97.7 7.6E-05 2.6E-09 54.7 6.0 42 166-207 7-50 (109)
88 2err_A Ataxin-2-binding protei 97.7 5.6E-05 1.9E-09 56.2 5.3 40 164-203 26-65 (109)
89 2d9p_A Polyadenylate-binding p 97.7 4.4E-05 1.5E-09 55.6 4.6 38 165-202 13-50 (103)
90 2dgt_A RNA-binding protein 30; 97.7 8E-05 2.7E-09 53.2 5.9 38 165-202 8-45 (92)
91 1x4d_A Matrin 3; structural ge 97.7 2.8E-05 9.5E-10 58.6 3.6 37 167-203 15-52 (102)
92 2dng_A Eukaryotic translation 97.7 7E-05 2.4E-09 54.6 5.7 43 165-208 13-55 (103)
93 2dgx_A KIAA0430 protein; RRM d 97.7 8.6E-05 3E-09 53.7 6.1 40 166-205 8-51 (96)
94 2e44_A Insulin-like growth fac 97.7 5.5E-05 1.9E-09 54.2 5.0 42 166-207 14-56 (96)
95 3lqv_A PRE-mRNA branch site pr 97.7 7.2E-05 2.5E-09 55.5 5.7 38 167-204 8-45 (115)
96 3d2w_A TAR DNA-binding protein 97.6 6.1E-05 2.1E-09 54.3 5.2 38 165-202 9-46 (89)
97 2kn4_A Immunoglobulin G-bindin 97.6 0.00015 5.1E-09 56.5 7.7 44 165-208 68-111 (158)
98 1x4g_A Nucleolysin TIAR; struc 97.6 9.2E-05 3.1E-09 54.6 6.1 39 164-202 22-60 (109)
99 2dgv_A HnRNP M, heterogeneous 97.6 7.3E-05 2.5E-09 53.1 5.3 38 165-202 6-43 (92)
100 2krb_A Eukaryotic translation 97.6 5.4E-05 1.8E-09 53.0 4.6 34 168-201 2-41 (81)
101 2kt5_A RNA and export factor-b 97.6 6.7E-05 2.3E-09 56.6 5.4 41 166-207 34-74 (124)
102 1x4a_A Splicing factor, argini 97.6 0.0001 3.4E-09 54.3 6.2 39 165-203 20-58 (109)
103 2j76_E EIF-4B, EIF4B, eukaryot 97.6 2.7E-05 9.3E-10 56.9 3.1 38 165-203 17-54 (100)
104 2cpy_A RNA-binding protein 12; 97.6 5.4E-05 1.8E-09 56.6 4.7 42 165-207 13-55 (114)
105 2do0_A HnRNP M, heterogeneous 97.6 7.3E-05 2.5E-09 55.2 5.4 38 166-203 14-51 (114)
106 2qfj_A FBP-interacting repress 97.6 7.4E-05 2.5E-09 60.0 5.7 41 167-207 28-68 (216)
107 2ad9_A Polypyrimidine tract-bi 97.6 5E-05 1.7E-09 58.9 4.5 36 167-202 31-66 (119)
108 2dnq_A RNA-binding protein 4B; 97.6 9.7E-05 3.3E-09 52.5 5.6 37 165-201 6-42 (90)
109 1wg5_A Heterogeneous nuclear r 97.6 8E-05 2.7E-09 54.8 5.3 42 165-207 13-55 (104)
110 1x4c_A Splicing factor, argini 97.6 9.1E-05 3.1E-09 54.8 5.6 37 166-202 14-50 (108)
111 2hvz_A Splicing factor, argini 97.6 8.6E-05 2.9E-09 53.8 5.2 35 168-202 1-35 (101)
112 1rk8_A CG8781-PA, CG8781-PA pr 97.6 0.0001 3.5E-09 58.6 6.0 43 165-207 70-112 (165)
113 3nmr_A Cugbp ELAV-like family 97.6 0.00012 4.1E-09 56.6 6.3 38 166-203 94-131 (175)
114 3n9u_C Cleavage and polyadenyl 97.6 8.4E-05 2.9E-09 59.4 5.5 43 166-208 54-98 (156)
115 2lea_A Serine/arginine-rich sp 97.6 5.5E-05 1.9E-09 58.7 4.3 43 165-207 45-87 (135)
116 1whx_A Hypothetical protein ri 97.6 8.4E-05 2.9E-09 55.6 5.0 37 166-202 9-45 (111)
117 2dnl_A Cytoplasmic polyadenyla 97.6 6.7E-05 2.3E-09 56.1 4.4 39 166-205 7-45 (114)
118 2cpj_A Non-POU domain-containi 97.5 0.00011 3.8E-09 53.1 5.4 38 165-202 13-50 (99)
119 2ek1_A RNA-binding protein 12; 97.5 2.7E-05 9.2E-10 55.7 2.0 41 167-207 15-55 (95)
120 2la4_A Nuclear and cytoplasmic 97.5 0.00013 4.4E-09 52.9 5.7 37 166-202 26-62 (101)
121 2qfj_A FBP-interacting repress 97.5 0.00017 5.9E-09 57.8 6.9 81 127-207 78-165 (216)
122 2dgu_A Heterogeneous nuclear r 97.5 0.0001 3.5E-09 53.8 4.9 37 166-202 10-46 (103)
123 4f02_A Polyadenylate-binding p 97.5 9.8E-05 3.4E-09 60.6 5.3 75 127-203 65-139 (213)
124 1why_A Hypothetical protein ri 97.5 0.00016 5.5E-09 52.1 5.6 37 166-202 16-52 (97)
125 2xnq_A Nuclear polyadenylated 97.5 0.00018 6E-09 52.5 5.8 37 164-200 19-56 (97)
126 2yh0_A Splicing factor U2AF 65 97.5 0.00048 1.6E-08 54.5 8.8 42 166-207 113-154 (198)
127 2nlw_A Eukaryotic translation 97.5 0.0002 6.9E-09 52.7 5.9 36 166-201 14-55 (105)
128 2lmi_A GRSF-1, G-rich sequence 97.5 0.00011 3.6E-09 54.4 4.3 40 165-204 9-51 (107)
129 2i2y_A Fusion protein consists 97.4 0.00029 1E-08 54.7 6.9 38 165-202 71-108 (150)
130 2cqp_A RNA-binding protein 12; 97.4 5E-05 1.7E-09 54.7 2.3 43 165-207 13-55 (98)
131 3q2s_C Cleavage and polyadenyl 97.4 0.00015 5E-09 61.3 5.4 43 166-208 67-111 (229)
132 2db1_A Heterogeneous nuclear r 97.4 9.8E-05 3.4E-09 55.8 3.9 40 165-204 15-57 (118)
133 2cpi_A CCR4-NOT transcription 97.4 9.3E-05 3.2E-09 55.1 3.5 43 165-207 13-58 (111)
134 1x4f_A Matrin 3; structural ge 97.4 8.2E-05 2.8E-09 57.1 3.0 36 167-202 25-61 (112)
135 2kvi_A Nuclear polyadenylated 97.4 0.00019 6.6E-09 51.8 4.7 36 166-201 9-45 (96)
136 2jvo_A Nucleolar protein 3; nu 97.4 0.00022 7.6E-09 53.1 5.1 37 164-200 28-64 (108)
137 2e5g_A U6 snRNA-specific termi 97.4 0.00033 1.1E-08 50.2 5.8 32 166-197 7-38 (94)
138 1wez_A HnRNP H', FTP-3, hetero 97.3 0.00016 5.4E-09 53.5 4.1 41 165-207 13-53 (102)
139 2cjk_A Nuclear polyadenylated 97.3 0.00016 5.6E-09 55.7 4.1 75 128-208 54-128 (167)
140 3beg_B Splicing factor, argini 97.3 0.00017 6E-09 54.1 3.9 36 167-202 16-51 (115)
141 2dgw_A Probable RNA-binding pr 97.3 0.00033 1.1E-08 49.7 5.2 40 165-206 8-47 (91)
142 2cpd_A Apobec-1 stimulating pr 97.3 0.00051 1.8E-08 49.5 6.3 37 165-201 13-51 (99)
143 2j8a_A Histone-lysine N-methyl 97.3 0.00024 8E-09 56.9 4.6 41 168-208 3-47 (136)
144 2hgl_A HNRPF protein, heteroge 97.3 0.00021 7.2E-09 56.2 4.3 40 165-204 42-84 (136)
145 2lcw_A RNA-binding protein FUS 96.4 3.8E-05 1.3E-09 57.3 0.0 43 165-207 5-55 (116)
146 2f3j_A RNA and export factor b 97.3 0.00035 1.2E-08 56.8 5.5 37 167-203 88-124 (177)
147 2hzc_A Splicing factor U2AF 65 97.2 0.00046 1.6E-08 48.2 5.4 37 166-202 5-52 (87)
148 2dha_A FLJ20171 protein; RRM d 97.2 0.00027 9.4E-09 54.6 4.5 42 166-208 22-67 (123)
149 1fj7_A Nucleolin RBD1, protein 97.2 0.00012 3.9E-09 53.1 1.9 41 165-206 15-55 (101)
150 1nu4_A U1A RNA binding domain; 97.2 0.0005 1.7E-08 49.1 5.3 36 166-201 7-46 (97)
151 2adc_A Polypyrimidine tract-bi 97.2 0.0007 2.4E-08 56.0 6.6 40 164-203 31-71 (229)
152 1wf1_A RNA-binding protein RAL 97.2 0.00043 1.5E-08 51.0 4.6 34 167-200 27-61 (110)
153 2hgn_A Heterogeneous nuclear r 97.1 0.00032 1.1E-08 55.4 3.9 38 166-204 45-82 (139)
154 2ghp_A U4/U6 snRNA-associated 97.1 0.0012 4.1E-08 55.9 7.8 77 128-204 168-248 (292)
155 2dnn_A RNA-binding protein 12; 97.1 0.0006 2E-08 51.5 4.9 37 167-204 16-52 (109)
156 2ghp_A U4/U6 snRNA-associated 97.1 0.00046 1.6E-08 58.5 4.7 41 164-204 38-78 (292)
157 3smz_A Protein raver-1, ribonu 97.1 0.0016 5.6E-08 54.8 8.1 72 127-208 65-136 (284)
158 2jvr_A Nucleolar protein 3; RN 97.1 0.0007 2.4E-08 51.4 5.1 35 166-200 27-62 (111)
159 1wel_A RNA-binding protein 12; 97.0 0.00022 7.7E-09 53.9 1.7 42 166-207 24-65 (124)
160 3sde_A Paraspeckle component 1 97.0 0.0018 6.2E-08 54.6 7.5 70 127-207 66-135 (261)
161 2e5j_A Methenyltetrahydrofolat 97.0 0.00081 2.8E-08 48.4 4.6 35 165-200 17-51 (97)
162 3sde_A Paraspeckle component 1 97.0 0.0013 4.3E-08 55.6 6.4 38 165-202 20-57 (261)
163 3pgw_S U1-70K; protein-RNA com 96.9 0.00091 3.1E-08 61.8 5.8 41 167-207 102-142 (437)
164 1fje_B Nucleolin RBD12, protei 96.9 0.0032 1.1E-07 48.9 8.0 68 127-197 62-129 (175)
165 2cqh_A IGF-II mRNA-binding pro 96.9 0.00074 2.5E-08 48.0 3.8 35 166-200 7-42 (93)
166 2hgm_A HNRPF protein, heteroge 96.8 0.0017 5.7E-08 50.5 5.7 38 166-204 41-80 (126)
167 2a3j_A U1 small nuclear ribonu 96.8 0.002 6.7E-08 49.9 5.7 35 167-201 29-67 (127)
168 3smz_A Protein raver-1, ribonu 96.8 0.0024 8.3E-08 53.8 6.8 76 127-203 145-221 (284)
169 3pgw_A U1-A; protein-RNA compl 96.8 0.0058 2E-07 51.3 9.1 38 166-203 206-243 (282)
170 2fc9_A NCL protein; structure 96.8 0.0012 3.9E-08 47.7 4.1 30 165-194 13-42 (101)
171 1fjc_A Nucleolin RBD2, protein 96.7 0.0011 3.6E-08 47.4 3.6 34 164-197 13-46 (96)
172 2cpx_A Hypothetical protein FL 96.7 0.0025 8.6E-08 46.8 5.3 35 166-200 24-62 (115)
173 1x5p_A Negative elongation fac 96.6 0.0032 1.1E-07 45.2 5.6 34 166-201 14-47 (97)
174 2adc_A Polypyrimidine tract-bi 96.6 0.01 3.4E-07 48.9 9.3 35 167-201 151-186 (229)
175 1owx_A Lupus LA protein, SS-B, 96.6 0.002 6.7E-08 50.3 4.5 41 165-205 16-57 (121)
176 2wbr_A GW182, gawky, LD47780P; 96.6 0.0024 8.3E-08 47.5 4.6 36 167-202 7-42 (89)
177 2cq2_A Hypothetical protein LO 96.6 0.0018 6.3E-08 49.8 4.0 35 167-201 25-61 (114)
178 1sjr_A Polypyrimidine tract-bi 96.5 0.0024 8.2E-08 52.2 4.8 36 166-201 45-80 (164)
179 3zzy_A Polypyrimidine tract-bi 96.5 0.0025 8.7E-08 50.1 4.7 35 167-201 28-62 (130)
180 1qm9_A Polypyrimidine tract-bi 96.5 0.012 4E-07 46.7 8.7 35 167-201 120-155 (198)
181 2e5i_A Heterogeneous nuclear r 96.4 0.0031 1.1E-07 48.9 4.6 35 167-201 25-59 (124)
182 2pe8_A Splicing factor 45; RRM 96.4 0.0046 1.6E-07 46.1 5.2 45 167-211 8-57 (105)
183 1wg1_A KIAA1579 protein, homol 96.4 0.0022 7.6E-08 45.3 3.2 33 167-200 5-37 (88)
184 3tyt_A Heterogeneous nuclear r 96.4 0.0031 1.1E-07 52.0 4.5 37 167-203 123-161 (205)
185 2bz2_A Negative elongation fac 96.2 0.0049 1.7E-07 46.8 4.7 49 150-201 23-71 (121)
186 3egn_A RNA-binding protein 40; 96.2 0.0024 8.3E-08 49.0 3.0 30 167-196 45-74 (143)
187 3u1l_A PRE-mRNA-splicing facto 96.1 0.0048 1.6E-07 53.1 4.2 38 164-201 131-177 (240)
188 2fc8_A NCL protein; structure 96.0 0.0079 2.7E-07 43.2 4.5 39 165-206 13-51 (102)
189 3htx_A HEN1; HEN1, small RNA m 95.6 0.018 6.2E-07 58.2 6.8 91 69-160 100-209 (950)
190 1fje_B Nucleolin RBD12, protei 95.0 0.0062 2.1E-07 47.2 1.1 34 164-197 10-43 (175)
191 2diu_A KIAA0430 protein; struc 95.0 0.025 8.6E-07 42.6 4.3 30 168-197 10-44 (96)
192 3tht_A Alkylated DNA repair pr 94.1 0.037 1.3E-06 50.0 4.1 35 167-201 18-54 (345)
193 2dit_A HIV TAT specific factor 93.8 0.095 3.3E-06 38.5 5.2 37 166-202 14-61 (112)
194 3v4m_A Splicing factor U2AF 65 93.4 0.074 2.5E-06 39.4 4.0 39 167-205 5-53 (105)
195 2d9o_A DNAJ (HSP40) homolog, s 92.1 0.14 4.8E-06 37.9 3.9 25 177-201 27-51 (100)
196 3ue2_A Poly(U)-binding-splicin 90.4 0.22 7.4E-06 37.8 3.6 38 167-204 20-62 (118)
197 1jmt_A Splicing factor U2AF 35 87.0 0.16 5.4E-06 37.4 0.6 21 183-203 42-63 (104)
198 1wfx_A Probable RNA 2'-phospho 86.8 0.79 2.7E-05 38.0 4.9 49 104-155 23-75 (186)
199 3s6e_A RNA-binding protein 39; 85.3 0.59 2E-05 35.2 3.1 37 167-203 7-53 (114)
200 1whv_A Poly(A)-specific ribonu 77.9 2.9 0.0001 31.5 4.5 25 169-194 18-42 (100)
201 2dnr_A Synaptojanin-1; RRM dom 76.5 2.5 8.5E-05 31.2 3.8 23 181-203 29-51 (91)
202 3ctr_A Poly(A)-specific ribonu 73.3 2.7 9.2E-05 31.8 3.2 25 169-194 8-32 (101)
203 3pq1_A Poly(A) RNA polymerase; 61.6 3.9 0.00013 38.2 2.5 36 166-202 52-87 (464)
204 1ufw_A Synaptojanin 2; RNP dom 59.2 5.7 0.00019 29.6 2.5 36 168-203 16-60 (95)
205 2dhx_A Poly (ADP-ribose) polym 57.2 19 0.00065 27.1 5.2 36 166-201 7-47 (104)
206 3dxb_A Thioredoxin N-terminall 56.5 5.1 0.00017 32.2 2.1 27 179-205 141-167 (222)
207 1wwh_A Nucleoporin 35, nucleop 54.5 15 0.00051 28.3 4.3 33 166-199 23-55 (119)
208 2l9w_A U4/U6 snRNA-associated- 52.3 24 0.00081 27.2 5.1 37 167-203 21-62 (117)
209 3pgw_A U1-A; protein-RNA compl 41.3 18 0.00061 29.7 3.1 21 181-201 27-47 (282)
210 2k9l_A RNA polymerase sigma fa 37.5 33 0.0011 23.7 3.6 54 77-137 15-70 (76)
211 4f25_A Polyadenylate-binding p 31.3 33 0.0011 24.6 2.8 56 127-182 53-112 (115)
212 1uw4_A UPF3X; nonsense mediate 30.6 60 0.002 23.5 4.1 33 169-201 3-35 (91)
213 1wey_A Calcipressin 1; structu 25.0 90 0.0031 23.3 4.3 33 168-200 6-43 (104)
214 1wih_A Mitochondrial ribosome 24.7 76 0.0026 22.8 3.7 47 110-156 19-75 (84)
215 1c07_A Protein (epidermal grow 24.6 32 0.0011 23.8 1.7 35 101-137 17-51 (95)
216 3p3d_A Nucleoporin 53; structu 23.0 48 0.0016 25.9 2.5 28 168-196 8-35 (132)
217 1d8j_A General transcription f 21.7 78 0.0027 22.7 3.2 54 98-152 19-74 (81)
No 1
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=100.00 E-value=2.3e-36 Score=252.41 Aligned_cols=140 Identities=31% Similarity=0.572 Sum_probs=121.1
Q ss_pred CCCcHHHHHHHHhchhhhcCCCCCCcChHHHHhhhcCCCCceehHHHhchhhhhhhcCCHHHHHHHHhhC--CceeeecC
Q 041714 70 AVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES--SLLVVSSN 147 (214)
Q Consensus 70 ~~~~~~l~~~I~kQvEyYFSd~NL~~D~fL~~~~~~~~eG~VpI~~i~sF~Rmk~lt~d~~~I~~ALk~S--~~levsed 147 (214)
..+.++++.+|++||||||||+||++|+||+++|.++ +|||||++|++|+|||+|+.|.+.|++||+.| ..|+++++
T Consensus 6 ~~~~~~~~~~i~~q~e~yfs~~nl~~D~fl~~~~~~~-~g~V~l~~i~sF~r~k~l~~d~~~I~~Al~~S~~~~lev~ed 84 (193)
T 2voo_A 6 NEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISED 84 (193)
T ss_dssp ---CHHHHHHHHHHHHHHTSTTTGGGCHHHHHHHHHT-TTCEEHHHHTTSHHHHHHCCCHHHHHHHHHTCSSCCEEECTT
T ss_pred cCCcHHHHHHHHHHhheecchhhcccCHHHHHHhccc-CCcEEeHHHhhhhHHHHhcCCHHHHHHHHhhcccceEEEecc
Confidence 3466899999999999999999999999999999766 99999999999999999999999999999999 89999999
Q ss_pred CceEEecCCCCCCcc-----CCCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccccccccc
Q 041714 148 GKKVKRLNPLPVTEV-----RDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEESKKKQ 212 (214)
Q Consensus 148 g~~VRR~~plp~~~~-----~~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~~~Kgs 212 (214)
+.+|||....|.++. .+...|+|||.+||.+++.++|+++|++||.|..|+|+++.. ..+||.
T Consensus 85 ~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~--~~~kG~ 152 (193)
T 2voo_A 85 KTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH--KAFKGS 152 (193)
T ss_dssp SSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT--CCEEEE
T ss_pred cceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC--CCcccE
Confidence 999999843333222 223468999999999999999999999999999999998753 445663
No 2
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=100.00 E-value=6.4e-36 Score=226.58 Aligned_cols=88 Identities=38% Similarity=0.663 Sum_probs=85.2
Q ss_pred CCcHHHHHHHHhchhhhcCCCCCCcChHHHHhhhcCCCCceehHHHhchhhhhhhcCCHHHHHHHHhhCCceeeecCCce
Q 041714 71 VLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKK 150 (214)
Q Consensus 71 ~~~~~l~~~I~kQvEyYFSd~NL~~D~fL~~~~~~~~eG~VpI~~i~sF~Rmk~lt~d~~~I~~ALk~S~~levsedg~~ 150 (214)
...+++.++|++||||||||+||++|+||+++|.+++||||||++|++|+|||+|+.|.+.|++||+.|+.|||++||++
T Consensus 5 ~~~~~~~~~I~~QvEyYFSd~NL~~D~fL~~~m~~~~~G~Vpl~~i~sF~r~k~lt~d~~~i~~al~~S~~lev~edg~~ 84 (92)
T 1s29_A 5 PLSSENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSEDGLM 84 (92)
T ss_dssp CCCHHHHHHHHHHHHHHTSHHHHTTCHHHHHHHTTSTTCCEEHHHHTTSHHHHTTCSCHHHHHHHHTTCSSEEECTTSSE
T ss_pred CCCHHHHHHHHHHHHhhcchhhhccCHHHHHHhccCCCCCEEhHHHhCChhHHHHcCCHHHHHHHHhhCCeEEEeCCCCE
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCC
Q 041714 151 VKRLNPLP 158 (214)
Q Consensus 151 VRR~~plp 158 (214)
|||+.|||
T Consensus 85 VRR~~PlP 92 (92)
T 1s29_A 85 VRRRDPLP 92 (92)
T ss_dssp EEESSCCC
T ss_pred EeCCCCCC
Confidence 99999987
No 3
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=100.00 E-value=4.9e-34 Score=219.56 Aligned_cols=90 Identities=34% Similarity=0.593 Sum_probs=85.5
Q ss_pred CCCCcHHHHHHHHhchhhhcCCCCCCcChHHHHhhhcCCCCceehHHHhchhhhhhhcCCHHHHHHHHhhCCceeeecCC
Q 041714 69 PAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNG 148 (214)
Q Consensus 69 ~~~~~~~l~~~I~kQvEyYFSd~NL~~D~fL~~~~~~~~eG~VpI~~i~sF~Rmk~lt~d~~~I~~ALk~S~~levsedg 148 (214)
..++.++++++|++||||||||+||++|+||+++| ++||||||++|++|+|||+|+.|.++|++||+.|+.|||++||
T Consensus 7 ~~~~~~~l~~~I~~QvEyYFSd~NL~~D~fL~~~m--d~~G~Vpl~~iasF~r~k~lt~d~~~i~~al~~S~~levsedg 84 (101)
T 2cqk_A 7 GAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQM--DSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKG 84 (101)
T ss_dssp CSCCHHHHHHHHHHHHHHHTSHHHHHHCHHHHHHS--CTTSCEEHHHHHHCHHHHHHCCCHHHHHHHHHHSSSEEECSSS
T ss_pred CCCCHHHHHHHHHHHHHhhcchhhhccCHHHHHhh--hcCCCEEhHHHhCChHHHHHcCCHHHHHHHHHhCCcEEEcCCC
Confidence 45788999999999999999999999999999999 7899999999999999999999999999999999999999999
Q ss_pred ceEEecCCCCCC
Q 041714 149 KKVKRLNPLPVT 160 (214)
Q Consensus 149 ~~VRR~~plp~~ 160 (214)
++|||+.+.+..
T Consensus 85 ~kVRr~~~~~i~ 96 (101)
T 2cqk_A 85 EKVRPSHKRCIS 96 (101)
T ss_dssp SEEEECCSCCCC
T ss_pred CeeeeCCCCCcC
Confidence 999999877653
No 4
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.23 E-value=1.8e-06 Score=64.60 Aligned_cols=46 Identities=20% Similarity=0.383 Sum_probs=40.1
Q ss_pred CCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccccccc
Q 041714 164 DPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEESKKK 211 (214)
Q Consensus 164 ~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~~~Kg 211 (214)
+...++|||.+||.+++.++|+++|++||.|..|+|+++.. ...||
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~--g~~rG 53 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH--KAFKG 53 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT--TSCCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC--CCCcc
Confidence 44568999999999999999999999999999999998765 34455
No 5
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.14 E-value=3.6e-06 Score=59.53 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=39.2
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEES 208 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~~ 208 (214)
...++|||.++|.+++.++|+++|++||.|..|+|.++..++++
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~ 52 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRS 52 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCcc
Confidence 45689999999999999999999999999999999988766543
No 6
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.14 E-value=3.1e-06 Score=62.52 Aligned_cols=43 Identities=19% Similarity=0.399 Sum_probs=39.2
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEES 208 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~~ 208 (214)
+.++|||.+||.+++.++|+++|++||.|..|+|.+++.++++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~ 60 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS 60 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcc
Confidence 4578999999999999999999999999999999988777654
No 7
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.09 E-value=1.8e-06 Score=62.65 Aligned_cols=41 Identities=12% Similarity=0.281 Sum_probs=37.6
Q ss_pred ceEEeeCCCCCCCHHHHHHHHhhcC-CeeEEEeeCCCccccc
Q 041714 168 FTVLVENLPEDHSVENMQRIFAEAG-KIKSICIRDPNVVEES 208 (214)
Q Consensus 168 rTVyv~~~P~d~t~e~L~~~F~~~G-~V~~VRmrrp~~~~~~ 208 (214)
++|||+|||.+++.++|+++|++|| .|..|+|.+++.++++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~ 43 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQS 43 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCc
Confidence 5899999999999999999999999 8999999988877654
No 8
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.07 E-value=3.6e-06 Score=59.30 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=39.8
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccccccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEESKKK 211 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~~~Kg 211 (214)
..++|||.++|.+.+.++|+++|++||.|..|+|.++..++...||
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g 48 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKG 48 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCc
Confidence 3579999999999999999999999999999999887766554444
No 9
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.03 E-value=3.9e-06 Score=57.76 Aligned_cols=40 Identities=13% Similarity=0.300 Sum_probs=36.6
Q ss_pred ceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 168 FTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 168 rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
++|||.++|.+.+.++|+++|++||.|..|++.++..+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~ 40 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKR 40 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCC
Confidence 5899999999999999999999999999999998776654
No 10
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.03 E-value=7.6e-06 Score=57.79 Aligned_cols=43 Identities=14% Similarity=0.229 Sum_probs=38.1
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEES 208 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~~ 208 (214)
..|+|||.++|.+++.++|+++|+.||.|..|++.++..++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~ 47 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHP 47 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSC
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCc
Confidence 3579999999999999999999999999999999887665543
No 11
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.01 E-value=1.1e-05 Score=59.12 Aligned_cols=44 Identities=16% Similarity=0.387 Sum_probs=39.4
Q ss_pred CCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 164 DPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 164 ~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
+...++|||.+||.+++.++|+++|++||.|..|+|.++..+++
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~ 53 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGM 53 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCC
Confidence 44568999999999999999999999999999999998876654
No 12
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.00 E-value=1.2e-05 Score=59.92 Aligned_cols=45 Identities=18% Similarity=0.332 Sum_probs=39.8
Q ss_pred CCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccccc
Q 041714 164 DPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEES 208 (214)
Q Consensus 164 ~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~~ 208 (214)
+...++|||.+||.+++.++|+++|++||.|..|+|.++..++++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~ 58 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKS 58 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCcc
Confidence 445689999999999999999999999999999999988766543
No 13
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.99 E-value=7.6e-06 Score=57.32 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=37.9
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
...++|||.++|.+.+.++|+++|++||.|..|+|.++..+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~ 47 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEK 47 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCc
Confidence 3468999999999999999999999999999999987655544
No 14
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.97 E-value=1.1e-05 Score=56.77 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=37.4
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
..++|||.++|.+++.++|+++|++||.|..|+|.++..+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~ 46 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGK 46 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCc
Confidence 357999999999999999999999999999999988766554
No 15
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.97 E-value=8.1e-06 Score=60.75 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=38.0
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
..++|||.+||.+++.++|+++|+.||.|..|+|.++..+++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~ 65 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRR 65 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCc
Confidence 458999999999999999999999999999999998776644
No 16
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.96 E-value=1.4e-05 Score=57.89 Aligned_cols=43 Identities=12% Similarity=0.260 Sum_probs=38.7
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
...++|||.+||.+++.++|+++|++||.|..|+|.++..+++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~ 50 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR 50 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCC
Confidence 4468999999999999999999999999999999998776654
No 17
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.95 E-value=1.4e-05 Score=57.68 Aligned_cols=43 Identities=16% Similarity=0.283 Sum_probs=38.3
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
...++|||.+||.+++.++|+++|+.||.|..|+|.++..+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~ 48 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKK 48 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCC
Confidence 3468999999999999999999999999999999988765554
No 18
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=97.95 E-value=1.2e-05 Score=60.06 Aligned_cols=44 Identities=14% Similarity=0.230 Sum_probs=39.0
Q ss_pred CCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 164 DPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 164 ~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
....++|||.++|.+++.++|+++|++||.|..|+|.++..+++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~ 80 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSL 80 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCC
Confidence 34568999999999999999999999999999999998766654
No 19
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=1.4e-05 Score=57.15 Aligned_cols=43 Identities=30% Similarity=0.444 Sum_probs=38.5
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
...++|||.++|.+.+.++|+++|++||.|..|+|.++..+++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~ 56 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRK 56 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCC
Confidence 4468999999999999999999999999999999998766544
No 20
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.94 E-value=1.5e-05 Score=58.15 Aligned_cols=43 Identities=14% Similarity=0.264 Sum_probs=38.4
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
...++|||.+||.+++.++|+++|+.||.|..|+|.++..+++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~ 55 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGH 55 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCS
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCC
Confidence 3467999999999999999999999999999999988776654
No 21
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=97.93 E-value=1.1e-05 Score=60.13 Aligned_cols=44 Identities=14% Similarity=0.260 Sum_probs=37.7
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEES 208 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~~ 208 (214)
...++|||.++|.+++.++|+++|+.||.|..|+|.++..++++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~ 66 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS 66 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCc
Confidence 44689999999999999999999999999999999988766543
No 22
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.93 E-value=1.3e-05 Score=55.91 Aligned_cols=41 Identities=17% Similarity=0.128 Sum_probs=36.9
Q ss_pred ceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccccc
Q 041714 168 FTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEES 208 (214)
Q Consensus 168 rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~~ 208 (214)
++|||.++|.+++.++|+++|++||.|..|++.++..++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~ 42 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSS 42 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCc
Confidence 58999999999999999999999999999999887666543
No 23
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=1.9e-05 Score=56.53 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=38.0
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
..++|||.++|.+++.++|+++|++||.|..|++.++..+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~ 45 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGR 45 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCc
Confidence 357999999999999999999999999999999998876654
No 24
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.92 E-value=1.4e-05 Score=60.17 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=39.1
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEES 208 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~~ 208 (214)
..++|||.++|.+++.++|+++|++||.|..|+|.++..++++
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~ 47 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKH 47 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCce
Confidence 3579999999999999999999999999999999988877654
No 25
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.92 E-value=8.9e-06 Score=60.15 Aligned_cols=43 Identities=9% Similarity=0.264 Sum_probs=38.4
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCC--eeEEEeeCCCccccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGK--IKSICIRDPNVVEES 208 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~--V~~VRmrrp~~~~~~ 208 (214)
...||||+|||.++|.++|+++|++||. |..|++.+++.++++
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~s 52 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQN 52 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSC
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCC
Confidence 3569999999999999999999999995 679999998888765
No 26
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.91 E-value=1.3e-05 Score=58.69 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=38.6
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
...++|||.+||.+++.++|+++|+.||.|..|+|.++..+++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~ 56 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQ 56 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCC
Confidence 4568999999999999999999999999999999998766654
No 27
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.91 E-value=1.7e-05 Score=57.54 Aligned_cols=43 Identities=14% Similarity=0.307 Sum_probs=38.4
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
...++|||.+||.+++.++|+++|++||.|..|+|.++..+++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~ 52 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQR 52 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCC
Confidence 3468999999999999999999999999999999998766554
No 28
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.90 E-value=1.6e-05 Score=57.40 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=37.2
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
.++|||.++|.+.+.++|+++|++||.|..|+|.++..+++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~ 42 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGR 42 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCc
Confidence 36999999999999999999999999999999998866654
No 29
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.89 E-value=1.9e-05 Score=57.75 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=38.4
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
...++|||.++|.+++.++|+++|+.||.|..|+|.++..+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~ 63 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGY 63 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCc
Confidence 3468999999999999999999999999999999988776654
No 30
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.89 E-value=1.8e-05 Score=56.54 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=37.8
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
..++|||.++|.+++.++|+++|++||.|..|+|.++..+++
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~ 55 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRR 55 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCC
Confidence 468999999999999999999999999999999988766544
No 31
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.89 E-value=1.8e-05 Score=58.15 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=38.1
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
..++|||.+||.+++.++|+++|+.||.|..|+|.++..+++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~ 55 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEH 55 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC
Confidence 467999999999999999999999999999999998876654
No 32
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.89 E-value=2.5e-05 Score=56.95 Aligned_cols=41 Identities=22% Similarity=0.227 Sum_probs=36.9
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVV 205 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~ 205 (214)
...++|||.+||.+++.++|+++|++||.|..|+|.++..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~ 53 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS 53 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC
Confidence 34689999999999999999999999999999999987544
No 33
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.89 E-value=1.4e-05 Score=56.26 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=38.3
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEES 208 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~~ 208 (214)
..++|||.++|.+.+.++|+++|++||.|..|+|.++..++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~ 46 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKC 46 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCc
Confidence 3579999999999999999999999999999999988766543
No 34
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.88 E-value=1.7e-05 Score=59.02 Aligned_cols=43 Identities=14% Similarity=0.267 Sum_probs=38.5
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
...++|||.+||.+++.++|+++|+.||.|..|+|.++..+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~ 65 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNL 65 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCC
Confidence 4468999999999999999999999999999999988776654
No 35
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.88 E-value=2e-05 Score=57.58 Aligned_cols=44 Identities=16% Similarity=0.348 Sum_probs=38.1
Q ss_pred CCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC-Ccccc
Q 041714 164 DPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP-NVVEE 207 (214)
Q Consensus 164 ~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp-~~~~~ 207 (214)
+...++|||.+||.+++.++|+++|+.||.|..|+|.+. ..+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~ 56 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGA 56 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCS
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCC
Confidence 345689999999999999999999999999999999887 44443
No 36
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.88 E-value=5e-05 Score=58.14 Aligned_cols=80 Identities=14% Similarity=0.012 Sum_probs=55.1
Q ss_pred CCHHHHHHHHhhCCceeeecCCceEEecCCCCCCccCCCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccc
Q 041714 127 RNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVE 206 (214)
Q Consensus 127 ~d~~~I~~ALk~S~~levsedg~~VRR~~plp~~~~~~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~ 206 (214)
.+.+....|++.-.-..+......|+...+-.. ......++|+|.++|.+.+.++|+++|++||.|..|++.++..++
T Consensus 49 ~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~--~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~ 126 (166)
T 3md3_A 49 HQSHDANIALQTLNGKQIENNIVKINWAFQSQQ--SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTG 126 (166)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCCCCC--CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTC
T ss_pred CCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC--CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCC
Confidence 356777777765444445422233443322221 223446899999999999999999999999999999998876555
Q ss_pred cc
Q 041714 207 ES 208 (214)
Q Consensus 207 ~~ 208 (214)
++
T Consensus 127 ~~ 128 (166)
T 3md3_A 127 SS 128 (166)
T ss_dssp CE
T ss_pred Cc
Confidence 43
No 37
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.88 E-value=2.3e-05 Score=57.16 Aligned_cols=43 Identities=23% Similarity=0.242 Sum_probs=38.4
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
...++|||.+||.+++.++|+++|++||.|..|+|.++..+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~ 55 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQ 55 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc
Confidence 3468999999999999999999999999999999998776544
No 38
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.87 E-value=2.3e-05 Score=58.24 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=38.3
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
...++|||.+||.+++.++|+++|+.||.|..|+|.++..+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~ 55 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 55 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCC
Confidence 3468999999999999999999999999999999998765544
No 39
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.87 E-value=1.5e-05 Score=65.48 Aligned_cols=42 Identities=24% Similarity=0.289 Sum_probs=38.7
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccccc
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEES 208 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~~ 208 (214)
.+||||.+||.+++.++|+++|++||.|.+|+|.++..++++
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~ 56 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRS 56 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCc
Confidence 479999999999999999999999999999999988877654
No 40
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=97.87 E-value=6.5e-06 Score=58.55 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=37.5
Q ss_pred ceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccccc
Q 041714 168 FTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEES 208 (214)
Q Consensus 168 rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~~ 208 (214)
|+|||.++|.+.+.++|+++|++||.|..|+|.++..++++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~ 42 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKP 42 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCc
Confidence 78999999999999999999999999999999988776553
No 41
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.87 E-value=2.3e-05 Score=57.05 Aligned_cols=42 Identities=21% Similarity=0.419 Sum_probs=38.0
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
..++|||.+||.+++.++|+++|++||.|..|+|.++..+++
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~ 53 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKA 53 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCC
Confidence 468999999999999999999999999999999998776654
No 42
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=97.87 E-value=1.1e-05 Score=55.26 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=35.5
Q ss_pred eEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 169 TVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 169 TVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
+|||.++|.+.+.++|+++|++||.|..|+|.++..+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~ 39 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNK 39 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSS
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCC
Confidence 689999999999999999999999999999988766654
No 43
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.86 E-value=2.4e-05 Score=60.02 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=38.8
Q ss_pred CCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 164 DPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 164 ~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
....++|||.+||.+++.++|+++|+.||.|..|+|.++..+++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~ 82 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQ 82 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCC
Confidence 34568999999999999999999999999999999988766544
No 44
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.86 E-value=2.3e-05 Score=56.61 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=38.4
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCee-EEEeeCCCccccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIK-SICIRDPNVVEES 208 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~-~VRmrrp~~~~~~ 208 (214)
..++|||.+||.+++.++|+++|++||.|. .|+|.+++.++++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~ 51 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIP 51 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCc
Confidence 468999999999999999999999999999 9999988766543
No 45
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.85 E-value=2.3e-05 Score=59.68 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=35.1
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
...++|||.+||.+++.++|+++|++||.|..|+|.+.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~ 51 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG 51 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC
Confidence 34679999999999999999999999999999999875
No 46
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.85 E-value=1.8e-05 Score=58.98 Aligned_cols=41 Identities=10% Similarity=0.260 Sum_probs=37.9
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
.++|||.+||.+++.++|+++|+.||.|..|+|.+++.+++
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~ 67 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR 67 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCC
Confidence 58999999999999999999999999999999998876655
No 47
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.85 E-value=2.5e-05 Score=57.54 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=38.5
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
...++|||.++|.+++.++|+++|+.||.|..|+|.++..+++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~ 66 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGF 66 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCC
Confidence 3468999999999999999999999999999999988776654
No 48
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.84 E-value=2.6e-05 Score=55.80 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=36.2
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNV 204 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~ 204 (214)
...++|||.++|.+++.++|+++|++||.|..|+|.++..
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~ 53 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE 53 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC
Confidence 3468999999999999999999999999999999987653
No 49
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=2.5e-05 Score=56.66 Aligned_cols=39 Identities=15% Similarity=0.315 Sum_probs=36.0
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCC
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPN 203 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~ 203 (214)
...++|||.++|.+++.++|+++|+.||.|..|+|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 53 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR 53 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC
Confidence 446899999999999999999999999999999998876
No 50
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.83 E-value=3.1e-05 Score=56.62 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=36.1
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVV 205 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~ 205 (214)
..++|||.+||.+++.++|+++|+.|| |..|+|.++..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~ 52 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSN 52 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCC
Confidence 458999999999999999999999999 999999988766
No 51
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.83 E-value=3.3e-05 Score=55.97 Aligned_cols=43 Identities=23% Similarity=0.355 Sum_probs=38.4
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeE--------EEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKS--------ICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~--------VRmrrp~~~~~ 207 (214)
...++|||.++|.+++.++|+++|++||.|.. |+|.+++.+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~ 61 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGK 61 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCC
Confidence 44689999999999999999999999999999 99988776654
No 52
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.82 E-value=1.9e-05 Score=57.57 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=38.5
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
...++|||.+||.+++.++|+++|++||.|..|+|.++..+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~ 55 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQ 55 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCc
Confidence 3468999999999999999999999999999999998766654
No 53
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=97.82 E-value=7.6e-06 Score=60.09 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=38.0
Q ss_pred cceEEeeCCCC------CCCHHHHHHHHhhcCCeeEEEeeCCCccccc
Q 041714 167 LFTVLVENLPE------DHSVENMQRIFAEAGKIKSICIRDPNVVEES 208 (214)
Q Consensus 167 ~rTVyv~~~P~------d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~~ 208 (214)
.+||||.|+|. +.+.++|+++|++||.|..|+|.++..++++
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~ 53 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKT 53 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEE
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCcc
Confidence 57999999999 8999999999999999999999988776653
No 54
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=97.82 E-value=2.6e-05 Score=58.89 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=33.8
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
.++|||+++|.+++.++|+++|++||.|.+|+|.+.
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~ 56 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK 56 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC
Confidence 579999999999999999999999999999999864
No 55
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.81 E-value=3.3e-05 Score=56.29 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=36.0
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCC
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPN 203 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~ 203 (214)
...++|||.+||.+++.++|+++|+.||.|..|+|.++.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 51 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP 51 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence 446899999999999999999999999999999998765
No 56
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=97.81 E-value=2.7e-05 Score=56.64 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=35.6
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCC
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPN 203 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~ 203 (214)
..++|||.++|.+++.++|+++|+.||.|..|+|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 45 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR 45 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC
Confidence 35899999999999999999999999999999998876
No 57
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.81 E-value=2.1e-05 Score=57.07 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=37.9
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
..++|||.+||.+++.++|+++|+.||.|..|+|.++..+++
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~ 52 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEK 52 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCC
Confidence 468999999999999999999999999999999988766654
No 58
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.81 E-value=3.4e-05 Score=60.49 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=38.0
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
..++|||.+||.+++.++|+++|++||.|..|+|.+...+++
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~ 79 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKT 79 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc
Confidence 468999999999999999999999999999999988776654
No 59
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.81 E-value=1.5e-05 Score=57.89 Aligned_cols=42 Identities=26% Similarity=0.414 Sum_probs=37.5
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
..++|||.++|.+++.++|+++|+.||.|..|+|.+++.+++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~ 48 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGK 48 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCc
Confidence 358999999999999999999999999999999987765544
No 60
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.79 E-value=1.7e-05 Score=56.86 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=36.2
Q ss_pred ceEEeeCCCCCCCHHHHHHHHhhcC--CeeEEEeeCCCccccc
Q 041714 168 FTVLVENLPEDHSVENMQRIFAEAG--KIKSICIRDPNVVEES 208 (214)
Q Consensus 168 rTVyv~~~P~d~t~e~L~~~F~~~G--~V~~VRmrrp~~~~~~ 208 (214)
.+|||.++|.+++.++|+++|++|| .|..|++.+++.++++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~ 44 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQS 44 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCcc
Confidence 5899999999999999999999999 9999999988777664
No 61
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=97.79 E-value=1.9e-05 Score=54.25 Aligned_cols=39 Identities=18% Similarity=0.368 Sum_probs=35.4
Q ss_pred eEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 169 TVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 169 TVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
+|||.++|.+.+.++|+++|++||.|..|++.++..+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~ 39 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNR 39 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTT
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCC
Confidence 489999999999999999999999999999988776654
No 62
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.79 E-value=1.9e-05 Score=56.62 Aligned_cols=41 Identities=15% Similarity=0.104 Sum_probs=37.3
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcCCeeEE-EeeCCCcccc
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAGKIKSI-CIRDPNVVEE 207 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~V-Rmrrp~~~~~ 207 (214)
.++|||.+||.+++.++|+++|++||.|..| +|.++..+++
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~ 46 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGN 46 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCC
Confidence 5799999999999999999999999999999 9988766654
No 63
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.78 E-value=2.6e-05 Score=58.14 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=38.4
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
...++|||.++|.+++.++|+++|++||.|..|+|.++..+++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~ 66 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGR 66 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCc
Confidence 4568999999999999999999999999999999988766544
No 64
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.78 E-value=4.2e-05 Score=58.18 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=38.6
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
...++|||.+||.+++.++|+++|++||.|..|+|.++..+++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~ 103 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEK 103 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCC
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCC
Confidence 4468999999999999999999999999999999988766654
No 65
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=97.78 E-value=8.8e-05 Score=58.69 Aligned_cols=80 Identities=18% Similarity=0.131 Sum_probs=52.4
Q ss_pred CCHHHHHHHHhhCCceeeecCCceEEecCCCCCCc--cCCCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCc
Q 041714 127 RNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTE--VRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNV 204 (214)
Q Consensus 127 ~d~~~I~~ALk~S~~levsedg~~VRR~~plp~~~--~~~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~ 204 (214)
.+.+....||+. ....+..-...|++..+-.... ......++|||.++|.+++.++|+++|+.||.|..|++.++..
T Consensus 63 ~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 141 (196)
T 1l3k_A 63 ATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG 141 (196)
T ss_dssp SSHHHHHHHHHT-CSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTT
T ss_pred CCHHHHHHHHhc-CCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCC
Confidence 466777788876 3344432222344432221110 1123358999999999999999999999999999999998766
Q ss_pred ccc
Q 041714 205 VEE 207 (214)
Q Consensus 205 ~~~ 207 (214)
+++
T Consensus 142 ~g~ 144 (196)
T 1l3k_A 142 SGK 144 (196)
T ss_dssp TCC
T ss_pred CCC
Confidence 554
No 66
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.78 E-value=3.9e-05 Score=57.83 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=38.8
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEES 208 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~~ 208 (214)
...++|||.+||.+++.++|+++|++||.|..|+|.++..++++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~ 63 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYL 63 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcc
Confidence 44689999999999999999999999999999999887665543
No 67
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.78 E-value=3.4e-05 Score=57.08 Aligned_cols=45 Identities=18% Similarity=0.322 Sum_probs=39.1
Q ss_pred CCCcceEEeeCCCCCCCHHHHHHHHhhcCCee--------EEEeeCCCccccc
Q 041714 164 DPKLFTVLVENLPEDHSVENMQRIFAEAGKIK--------SICIRDPNVVEES 208 (214)
Q Consensus 164 ~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~--------~VRmrrp~~~~~~ 208 (214)
....++|||.+||.+++.++|+++|++||.|. .|+|.+++.++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~ 64 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKP 64 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSB
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCe
Confidence 44578999999999999999999999999999 5999887666543
No 68
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.77 E-value=5.3e-05 Score=55.15 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=35.9
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCC
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPN 203 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~ 203 (214)
...++|||.+||.+++.++|+++|+.||.|..|+|.++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~ 51 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 51 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC
Confidence 446899999999999999999999999999999998764
No 69
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=97.76 E-value=2e-05 Score=59.32 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=37.9
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEES 208 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~~ 208 (214)
..++|||.+||.+++.++|+++|+.||.|..|+|.++..++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~ 77 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHP 77 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCc
Confidence 3589999999999999999999999999999999887655543
No 70
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.75 E-value=3.5e-05 Score=56.37 Aligned_cols=41 Identities=27% Similarity=0.274 Sum_probs=36.8
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
..++|||.+||.+++.++|+++|++||.|..|+|.++. +++
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~ 68 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGR 68 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCC
Confidence 36899999999999999999999999999999998776 443
No 71
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.74 E-value=4.6e-05 Score=57.47 Aligned_cols=38 Identities=11% Similarity=0.271 Sum_probs=35.6
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCC
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPN 203 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~ 203 (214)
..++|||.+||.+++.++|+++|++||.|..|+|.++.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 43 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR 43 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC
Confidence 45799999999999999999999999999999999876
No 72
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.73 E-value=0.00012 Score=56.36 Aligned_cols=77 Identities=19% Similarity=0.178 Sum_probs=53.7
Q ss_pred CCHHHHHHHHhhCCceeeecCCceEEecCCCCCCccCCCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccc
Q 041714 127 RNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVE 206 (214)
Q Consensus 127 ~d~~~I~~ALk~S~~levsedg~~VRR~~plp~~~~~~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~ 206 (214)
.+.+....|++.-....+..-...|+...+-. .....++|+|.++|.+.+.++|+++|++||.|..|++.++..++
T Consensus 53 ~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~ 128 (168)
T 1b7f_A 53 TSEMDSQRAIKVLNGITVRNKRLKVSYARPGG----ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTG 128 (168)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCCCS----STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTC
T ss_pred CCHHHHHHHHHhcCCCEeCCcEEEEEecCCCc----ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCC
Confidence 35666777776544445532222343333221 23446899999999999999999999999999999998876554
Q ss_pred c
Q 041714 207 E 207 (214)
Q Consensus 207 ~ 207 (214)
+
T Consensus 129 ~ 129 (168)
T 1b7f_A 129 R 129 (168)
T ss_dssp C
T ss_pred C
Confidence 4
No 73
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.73 E-value=2.9e-05 Score=55.11 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=33.8
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
.++|||.++|.+++.++|+++|++||.|..|+|.++
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 40 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP 40 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC
Confidence 579999999999999999999999999999999764
No 74
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.73 E-value=3e-05 Score=58.26 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=34.5
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCc
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNV 204 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~ 204 (214)
..+|||.+||.+++.++|+++|++||.|..|+|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~ 42 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN 42 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC
Confidence 35899999999999999999999999999999987643
No 75
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.71 E-value=2.9e-05 Score=55.96 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=35.0
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCc
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNV 204 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~ 204 (214)
.++|||.+||.+++.++|+++|+.||.|..|+|.++..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 42 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKN 42 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 57999999999999999999999999999999987654
No 76
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.70 E-value=5.4e-05 Score=53.00 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=35.4
Q ss_pred CCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 164 DPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 164 ~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
+...++|||.++|.+.+.++|+++|++||.|..|++.+.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~ 47 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR 47 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC
Confidence 345689999999999999999999999999999999863
No 77
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.70 E-value=0.00013 Score=56.53 Aligned_cols=76 Identities=13% Similarity=0.210 Sum_probs=52.8
Q ss_pred CCHHHHHHHHhhCCceeeecCCceEEecCCCCCCccCCCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccc
Q 041714 127 RNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVE 206 (214)
Q Consensus 127 ~d~~~I~~ALk~S~~levsedg~~VRR~~plp~~~~~~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~ 206 (214)
.+.+....|+ .-.-..+. |..++-..+-+. ......++|||.++|.+.+.++|+++|++||.|..|++.+...++
T Consensus 59 ~~~~~A~~A~-~~~~~~~~--g~~i~v~~~~~~--~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g 133 (172)
T 2g4b_A 59 RSVDETTQAM-AFDGIIFQ--GQSLKIRRPHDY--QPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG 133 (172)
T ss_dssp SSHHHHHHHG-GGTTCEET--TEECEEECCSSC--CCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTC
T ss_pred CCHHHHHHHH-HhCCcEec--CceeeecCCccc--CCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 4667777788 43344453 444332222211 122346899999999999999999999999999999998876554
Q ss_pred c
Q 041714 207 E 207 (214)
Q Consensus 207 ~ 207 (214)
+
T Consensus 134 ~ 134 (172)
T 2g4b_A 134 L 134 (172)
T ss_dssp S
T ss_pred C
Confidence 4
No 78
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.70 E-value=0.00015 Score=55.45 Aligned_cols=77 Identities=17% Similarity=0.180 Sum_probs=53.3
Q ss_pred CCHHHHHHHHhhCCceeeecCCceEEecCCCCCCccCCCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccc
Q 041714 127 RNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVE 206 (214)
Q Consensus 127 ~d~~~I~~ALk~S~~levsedg~~VRR~~plp~~~~~~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~ 206 (214)
.+.+....|++.-.-..+..-..+|....+-. .....++|+|.++|.+.+.++|+++|++||.|..|++.++..++
T Consensus 52 ~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g 127 (167)
T 1fxl_A 52 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSS----ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 127 (167)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCCCC----GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC
T ss_pred CCHHHHHHHHHHcCCCccCCceEEEEecCCCc----ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCC
Confidence 35677777777533344432222344433321 12345799999999999999999999999999999998776554
Q ss_pred c
Q 041714 207 E 207 (214)
Q Consensus 207 ~ 207 (214)
+
T Consensus 128 ~ 128 (167)
T 1fxl_A 128 V 128 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 79
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.69 E-value=5.8e-05 Score=53.71 Aligned_cols=38 Identities=11% Similarity=0.331 Sum_probs=34.9
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
...++|||.++|.+++.++|+++|++||.|..|+|.+.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~ 44 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD 44 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC
Confidence 44689999999999999999999999999999999864
No 80
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=97.69 E-value=5.2e-05 Score=60.06 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=39.0
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEES 208 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~~ 208 (214)
...++|||.+||.+++.++|+++|+.||.|..|+|.++..++++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~ 54 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 54 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCc
Confidence 44689999999999999999999999999999999987766543
No 81
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=97.69 E-value=6.6e-05 Score=57.91 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=38.4
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
...++|||.+||.+++.++|+++|++||.|..|+|.++..+++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~ 86 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRR 86 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc
Confidence 3468999999999999999999999999999999998776654
No 82
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.69 E-value=5.1e-05 Score=56.91 Aligned_cols=36 Identities=17% Similarity=0.080 Sum_probs=33.8
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
.++|||.+||.+++.++|+++|++||.|..|+|.+.
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~ 50 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF 50 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC
Confidence 579999999999999999999999999999999864
No 83
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=97.69 E-value=3.6e-05 Score=58.98 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=39.3
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeE--EEeeCCCccccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKS--ICIRDPNVVEES 208 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~--VRmrrp~~~~~~ 208 (214)
...++|||.+||.+++.++|+++|++||.|.. |+|.+++.++++
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~ 66 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLN 66 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCc
Confidence 34579999999999999999999999999977 999998877765
No 84
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.68 E-value=4.6e-05 Score=56.47 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=36.1
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCC
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPN 203 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~ 203 (214)
...++|||.++|.+++.++|+++|+.||.|..|+|.++.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 61 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS 61 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC
Confidence 446899999999999999999999999999999998875
No 85
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.68 E-value=6.5e-05 Score=54.62 Aligned_cols=41 Identities=10% Similarity=0.075 Sum_probs=36.8
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhh-cCCeeEEEeeCCCcccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAE-AGKIKSICIRDPNVVEE 207 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~-~G~V~~VRmrrp~~~~~ 207 (214)
..++|||.+||.+++.++|+++|+. ||.|..|+|.++. +++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~ 49 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGV 49 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCC
Confidence 3579999999999999999999999 9999999998876 543
No 86
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.67 E-value=4.2e-05 Score=57.19 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=33.9
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
.++|||.++|.+++.++|+++|++||.|..|+|.+.
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~ 50 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG 50 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC
Confidence 579999999999999999999999999999999874
No 87
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.67 E-value=7.6e-05 Score=54.71 Aligned_cols=42 Identities=7% Similarity=0.133 Sum_probs=36.7
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCC-eeEEEee-CCCcccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGK-IKSICIR-DPNVVEE 207 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~-V~~VRmr-rp~~~~~ 207 (214)
..++|||.+||.+++.++|+++|+.||. |..|++. ++..+++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~ 50 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMK 50 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCC
Confidence 3579999999999999999999999998 9999998 6655543
No 88
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.67 E-value=5.6e-05 Score=56.20 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=36.2
Q ss_pred CCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCC
Q 041714 164 DPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPN 203 (214)
Q Consensus 164 ~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~ 203 (214)
....++|||.++|.+.+.++|+++|++||.|..|+|.++.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~ 65 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 65 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC
Confidence 3456899999999999999999999999999999998764
No 89
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.66 E-value=4.4e-05 Score=55.56 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=35.4
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
...++|||.+||.+++.++|+++|++||.|..|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~ 50 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME 50 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC
Confidence 45689999999999999999999999999999999876
No 90
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.66 E-value=8e-05 Score=53.20 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=34.8
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
...++|||.++|.+++.++|+++|++||.|..|++.+.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~ 45 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 45 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC
Confidence 44689999999999999999999999999999999754
No 91
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.66 E-value=2.8e-05 Score=58.56 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=34.3
Q ss_pred cceEEeeCCCC-CCCHHHHHHHHhhcCCeeEEEeeCCC
Q 041714 167 LFTVLVENLPE-DHSVENMQRIFAEAGKIKSICIRDPN 203 (214)
Q Consensus 167 ~rTVyv~~~P~-d~t~e~L~~~F~~~G~V~~VRmrrp~ 203 (214)
.++|||.+||. +++.++|+++|++||.|..|+|.+.+
T Consensus 15 ~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k 52 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI 52 (102)
T ss_dssp CCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC
Confidence 57999999999 99999999999999999999998753
No 92
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.66 E-value=7e-05 Score=54.58 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=37.7
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEES 208 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~~ 208 (214)
...++|||.+||.+++.++|+++|+.|| |..|+|.++..++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~ 55 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKF 55 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCcc
Confidence 3468999999999999999999999998 999999988766543
No 93
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.66 E-value=8.6e-05 Score=53.75 Aligned_cols=40 Identities=28% Similarity=0.273 Sum_probs=36.3
Q ss_pred CcceEEeeCCCCCCCHHHHH----HHHhhcCCeeEEEeeCCCcc
Q 041714 166 KLFTVLVENLPEDHSVENMQ----RIFAEAGKIKSICIRDPNVV 205 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~----~~F~~~G~V~~VRmrrp~~~ 205 (214)
..++|||.++|.+++.++|+ ++|++||.|..|+|.++..+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~ 51 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY 51 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC
Confidence 35799999999999999999 99999999999999987655
No 94
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=5.5e-05 Score=54.23 Aligned_cols=42 Identities=12% Similarity=0.258 Sum_probs=36.5
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEE-eeCCCcccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSIC-IRDPNVVEE 207 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VR-mrrp~~~~~ 207 (214)
..++|||.++|.+++.++|+++|++||.|..|+ |.+++.+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~ 56 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV 56 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE
Confidence 357999999999999999999999999999995 777665543
No 95
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=97.65 E-value=7.2e-05 Score=55.48 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=34.9
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCc
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNV 204 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~ 204 (214)
.++|||.++|.+++.++|+++|+.||.|..|+|.+.+.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~ 45 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE 45 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC
Confidence 57999999999999999999999999999999987543
No 96
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.65 E-value=6.1e-05 Score=54.33 Aligned_cols=38 Identities=26% Similarity=0.445 Sum_probs=33.9
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
....+|||.++|.+++.++|+++|++||.|..|+|.+.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~ 46 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP 46 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC
Confidence 34679999999999999999999999999999999863
No 97
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.64 E-value=0.00015 Score=56.52 Aligned_cols=44 Identities=23% Similarity=0.420 Sum_probs=39.0
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEES 208 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~~ 208 (214)
...++|||.+||.+++.++|+++|+.||.|..|+|.++..++++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~ 111 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKES 111 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCcc
Confidence 34689999999999999999999999999999999988766553
No 98
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.64 E-value=9.2e-05 Score=54.60 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=35.8
Q ss_pred CCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 164 DPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 164 ~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
....++|||.+||.+++.++|+++|+.||.|..|+|.+.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 60 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE 60 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC
Confidence 345689999999999999999999999999999999875
No 99
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.64 E-value=7.3e-05 Score=53.06 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=34.7
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
...++|||.++|.+++.++|+++|++||.|..|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~ 43 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME 43 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc
Confidence 34689999999999999999999999999999999863
No 100
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=97.63 E-value=5.4e-05 Score=52.97 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=31.4
Q ss_pred ceEEeeCCCCCC------CHHHHHHHHhhcCCeeEEEeeC
Q 041714 168 FTVLVENLPEDH------SVENMQRIFAEAGKIKSICIRD 201 (214)
Q Consensus 168 rTVyv~~~P~d~------t~e~L~~~F~~~G~V~~VRmrr 201 (214)
++|||.++|.+. +.++|+++|++||.|..|+|.+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~ 41 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE 41 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC
Confidence 689999999988 6799999999999999999973
No 101
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.63 E-value=6.7e-05 Score=56.59 Aligned_cols=41 Identities=27% Similarity=0.290 Sum_probs=36.8
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
..++|||.++|.+++.++|+++|+.||.|..|+|.++. +++
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~ 74 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGR 74 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCC
Confidence 35799999999999999999999999999999998876 443
No 102
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.63 E-value=0.0001 Score=54.28 Aligned_cols=39 Identities=23% Similarity=0.457 Sum_probs=35.2
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCC
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPN 203 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~ 203 (214)
...++|||.+||.+++.++|+++|++||.|..|+|.+.+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~ 58 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR 58 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence 346899999999999999999999999999999997653
No 103
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=97.63 E-value=2.7e-05 Score=56.86 Aligned_cols=38 Identities=21% Similarity=0.389 Sum_probs=33.7
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCC
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPN 203 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~ 203 (214)
...++|||.++|.+++.++|+++|+.|| |..|+|.++.
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~ 54 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREP 54 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecC
Confidence 4468999999999999999999999999 9999998876
No 104
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.63 E-value=5.4e-05 Score=56.65 Aligned_cols=42 Identities=7% Similarity=0.055 Sum_probs=37.1
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCe-eEEEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKI-KSICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V-~~VRmrrp~~~~~ 207 (214)
...++|||.+||.+++.++|+++|+.||.| ..|+|.++. +++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~ 55 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQ 55 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSS
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCC
Confidence 346899999999999999999999999999 899998876 543
No 105
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.62 E-value=7.3e-05 Score=55.22 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=35.3
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCC
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPN 203 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~ 203 (214)
..++|||.+||.+++.++|+++|++||.|..|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~ 51 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK 51 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence 35799999999999999999999999999999998765
No 106
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.61 E-value=7.4e-05 Score=60.02 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=36.1
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
.++|||.+||.+++.++|+++|+.||.|..|+|.++..+++
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~ 68 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMK 68 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-C
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCc
Confidence 57999999999999999999999999999999988765544
No 107
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.61 E-value=5e-05 Score=58.90 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=33.9
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
.++|||.+||.+++.++|+++|++||.|..|+|.+.
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~ 66 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG 66 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC
Confidence 579999999999999999999999999999999864
No 108
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.61 E-value=9.7e-05 Score=52.54 Aligned_cols=37 Identities=19% Similarity=0.453 Sum_probs=34.1
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeC
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRD 201 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrr 201 (214)
...++|||.++|.+++.++|+++|++||.|..|+|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~ 42 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK 42 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEET
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC
Confidence 3468999999999999999999999999999999974
No 109
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.60 E-value=8e-05 Score=54.80 Aligned_cols=42 Identities=14% Similarity=0.110 Sum_probs=36.5
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeE-EEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKS-ICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~-VRmrrp~~~~~ 207 (214)
...++|||.+||.+++.++|+++|+.||.|.. |+|.++ .+++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~ 55 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGR 55 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCC
Confidence 34579999999999999999999999999997 998876 4544
No 110
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.60 E-value=9.1e-05 Score=54.76 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=34.5
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
..++|||.+||.+++.++|+++|++||.|..|+|.++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~ 50 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 50 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC
Confidence 3579999999999999999999999999999999875
No 111
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.58 E-value=8.6e-05 Score=53.81 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=33.2
Q ss_pred ceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 168 FTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 168 rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
++|||.++|.+++.++|+++|++||.|..|+|.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 35 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN 35 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC
Confidence 58999999999999999999999999999999876
No 112
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=97.58 E-value=0.0001 Score=58.58 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=37.9
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
...++|||.+||.+++.++|+++|++||.|..|+|.+...++.
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~ 112 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGF 112 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCc
Confidence 3467999999999999999999999999999999998766654
No 113
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.58 E-value=0.00012 Score=56.62 Aligned_cols=38 Identities=11% Similarity=0.212 Sum_probs=35.2
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCC
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPN 203 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~ 203 (214)
..++|||.++|.+.+.++|+++|++||.|..|++.++.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~ 131 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP 131 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC
Confidence 46799999999999999999999999999999998764
No 114
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=97.58 E-value=8.4e-05 Score=59.37 Aligned_cols=43 Identities=9% Similarity=0.132 Sum_probs=38.2
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcC--CeeEEEeeCCCccccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAG--KIKSICIRDPNVVEES 208 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G--~V~~VRmrrp~~~~~~ 208 (214)
..++|||.+||.+++.++|+++|+.|| .|..|+|.+++.++++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~s 98 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQS 98 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCcc
Confidence 357999999999999999999999999 9999999988777764
No 115
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=97.57 E-value=5.5e-05 Score=58.70 Aligned_cols=43 Identities=21% Similarity=0.413 Sum_probs=38.2
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
...++|||.+||.+++.++|+++|+.||.|..|+|.++..+++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~ 87 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE 87 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCc
Confidence 3468999999999999999999999999999999988766544
No 116
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.56 E-value=8.4e-05 Score=55.61 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=34.0
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
..++|||.+||.+++.++|+++|++||.|..|+|.+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~ 45 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG 45 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC
Confidence 3579999999999999999999999999999999753
No 117
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=6.7e-05 Score=56.12 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=34.9
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVV 205 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~ 205 (214)
..++|||.+||.+++.++|+++|++||.|. +++.+...+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~ 45 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAES 45 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCC
Confidence 358999999999999999999999999999 888776655
No 118
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.55 E-value=0.00011 Score=53.12 Aligned_cols=38 Identities=29% Similarity=0.496 Sum_probs=35.0
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
...++|||.++|.+++.++|+++|++||.|..|+|.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~ 50 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD 50 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC
Confidence 34689999999999999999999999999999999875
No 119
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.55 E-value=2.7e-05 Score=55.68 Aligned_cols=41 Identities=17% Similarity=0.108 Sum_probs=35.5
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
.++|||.+||.+++.++|+++|++||.|..+++.++..+++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~ 55 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGM 55 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCC
Confidence 57999999999999999999999999999887776555543
No 120
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.00013 Score=52.86 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=34.2
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
..++|||.++|.+++.++|+++|+.||.|..|+|.+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~ 62 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE 62 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC
Confidence 3589999999999999999999999999999999853
No 121
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.54 E-value=0.00017 Score=57.83 Aligned_cols=81 Identities=17% Similarity=0.220 Sum_probs=53.9
Q ss_pred CCHHHHHHHHhhCCceeeecCCceEEecCCCCCCc-------cCCCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEe
Q 041714 127 RNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTE-------VRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICI 199 (214)
Q Consensus 127 ~d~~~I~~ALk~S~~levsedg~~VRR~~plp~~~-------~~~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRm 199 (214)
.+.+....||+.-....+..-..+|.+........ ......++|||.++|.+++.++|+++|++||.|..|++
T Consensus 78 ~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i 157 (216)
T 2qfj_A 78 EVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATL 157 (216)
T ss_dssp SSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEE
T ss_pred CCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEE
Confidence 35677777877443344443333444432221100 01123579999999999999999999999999999999
Q ss_pred eCCCcccc
Q 041714 200 RDPNVVEE 207 (214)
Q Consensus 200 rrp~~~~~ 207 (214)
.++..+++
T Consensus 158 ~~~~~~g~ 165 (216)
T 2qfj_A 158 ARDPTTGK 165 (216)
T ss_dssp EECTTTCC
T ss_pred EecCCCCC
Confidence 98766544
No 122
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.53 E-value=0.0001 Score=53.83 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=34.1
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
..++|||.+||.+++.++|+++|++||.|..|++.+.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~ 46 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD 46 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC
Confidence 3579999999999999999999999999999998753
No 123
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.52 E-value=9.8e-05 Score=60.56 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=51.0
Q ss_pred CCHHHHHHHHhhCCceeeecCCceEEecCCCCCCccCCCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCC
Q 041714 127 RNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPN 203 (214)
Q Consensus 127 ~d~~~I~~ALk~S~~levsedg~~VRR~~plp~~~~~~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~ 203 (214)
.+.+....||+......+. |..+|...............++|||.++|.+++.++|+++|++||.|..|+|.++.
T Consensus 65 ~~~~~A~~Ai~~~~~~~~~--g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~ 139 (213)
T 4f02_A 65 QQPADAERALDTMNFDVIK--GKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE 139 (213)
T ss_dssp SSHHHHHHHHHHHTTCEET--TEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET
T ss_pred CCHHHHHHHHHHhhhhhcC--CcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC
Confidence 3566677777754443332 44444332222211112235689999999999999999999999999999998754
No 124
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.50 E-value=0.00016 Score=52.08 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=34.2
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
..++|||.++|.+++.++|+++|++||.|..|+|.+.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~ 52 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG 52 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC
Confidence 3579999999999999999999999999999999864
No 125
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.49 E-value=0.00018 Score=52.47 Aligned_cols=37 Identities=32% Similarity=0.463 Sum_probs=33.8
Q ss_pred CCCcceEEeeCCCC-CCCHHHHHHHHhhcCCeeEEEee
Q 041714 164 DPKLFTVLVENLPE-DHSVENMQRIFAEAGKIKSICIR 200 (214)
Q Consensus 164 ~~~~rTVyv~~~P~-d~t~e~L~~~F~~~G~V~~VRmr 200 (214)
....++|||.++|. +++.++|+++|+.||.|..|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~ 56 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK 56 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe
Confidence 34568999999998 99999999999999999999995
No 126
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.49 E-value=0.00048 Score=54.48 Aligned_cols=42 Identities=10% Similarity=0.253 Sum_probs=37.6
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
..++|||.++|.+++.++|+++|++||.|..|++.++..+++
T Consensus 113 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~ 154 (198)
T 2yh0_A 113 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 154 (198)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCC
Confidence 458999999999999999999999999999999988765544
No 127
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=97.46 E-value=0.0002 Score=52.67 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=32.6
Q ss_pred CcceEEeeCCCCCC------CHHHHHHHHhhcCCeeEEEeeC
Q 041714 166 KLFTVLVENLPEDH------SVENMQRIFAEAGKIKSICIRD 201 (214)
Q Consensus 166 ~~rTVyv~~~P~d~------t~e~L~~~F~~~G~V~~VRmrr 201 (214)
..++|||.++|.+. +.++|+++|++||.|..|+|.+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~ 55 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE 55 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC
Confidence 35899999999988 7799999999999999999973
No 128
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=97.45 E-value=0.00011 Score=54.41 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=36.1
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCC---eeEEEeeCCCc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGK---IKSICIRDPNV 204 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~---V~~VRmrrp~~ 204 (214)
...++|||.+||.+++.++|+++|+.||. |..|+|.++..
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~ 51 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD 51 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC
Confidence 44689999999999999999999999998 99999988765
No 129
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.44 E-value=0.00029 Score=54.72 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=35.1
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
...++|||.++|.+++.++|+++|++||.|..|+|.++
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 108 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN 108 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC
Confidence 34689999999999999999999999999999999875
No 130
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.44 E-value=5e-05 Score=54.65 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=35.7
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
...++|||.+||.+++.++|+++|++||.|..+++.++..+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~ 55 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGM 55 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCC
Confidence 3458999999999999999999999999998776665555443
No 131
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=97.43 E-value=0.00015 Score=61.34 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=38.0
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcC--CeeEEEeeCCCccccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAG--KIKSICIRDPNVVEES 208 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G--~V~~VRmrrp~~~~~~ 208 (214)
..++|||.+||.+++.++|+++|++|| .|..|+|.+++.++++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~s 111 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQS 111 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCcc
Confidence 457999999999999999999999999 9999999988777654
No 132
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.43 E-value=9.8e-05 Score=55.81 Aligned_cols=40 Identities=15% Similarity=0.249 Sum_probs=36.0
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCC---eeEEEeeCCCc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGK---IKSICIRDPNV 204 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~---V~~VRmrrp~~ 204 (214)
...++|||.+||.+++.++|+++|+.||. |..|+|.++..
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~ 57 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE 57 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC
Confidence 34689999999999999999999999999 89999987654
No 133
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.41 E-value=9.3e-05 Score=55.06 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=38.2
Q ss_pred CCcceEEeeCCCCCCCHHHHH---HHHhhcCCeeEEEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQ---RIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~---~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
...++|||.+||.+++.++|+ ++|++||.|..|+|.++..+++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~ 58 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAG 58 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCS
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCc
Confidence 446799999999999999999 9999999999999998776544
No 134
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.39 E-value=8.2e-05 Score=57.09 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=33.6
Q ss_pred cceEEeeCCCCC-CCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 167 LFTVLVENLPED-HSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 167 ~rTVyv~~~P~d-~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
.++|||.+||.+ ++.++|+++|++||.|..|+|.+.
T Consensus 25 ~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~ 61 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM 61 (112)
T ss_dssp CCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT
T ss_pred CCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC
Confidence 579999999998 999999999999999999999764
No 135
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00019 Score=51.77 Aligned_cols=36 Identities=33% Similarity=0.509 Sum_probs=33.2
Q ss_pred CcceEEeeCCCC-CCCHHHHHHHHhhcCCeeEEEeeC
Q 041714 166 KLFTVLVENLPE-DHSVENMQRIFAEAGKIKSICIRD 201 (214)
Q Consensus 166 ~~rTVyv~~~P~-d~t~e~L~~~F~~~G~V~~VRmrr 201 (214)
..++|||.++|. +++.++|+++|++||.|..|+|.+
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~ 45 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKN 45 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEET
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeC
Confidence 467999999998 999999999999999999999964
No 136
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.36 E-value=0.00022 Score=53.09 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=34.2
Q ss_pred CCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEee
Q 041714 164 DPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIR 200 (214)
Q Consensus 164 ~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmr 200 (214)
+...++|||.++|.+.+.++|+++|++||.|..|+|.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~ 64 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL 64 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 3456899999999999999999999999999999997
No 137
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.35 E-value=0.00033 Score=50.19 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=30.3
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEE
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSI 197 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~V 197 (214)
..++|||.++|.+++.++|+++|+.||.|..|
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v 38 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV 38 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE
Confidence 45799999999999999999999999999998
No 138
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.35 E-value=0.00016 Score=53.50 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=34.9
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
...++|||.+||.+++.++|+++|+.||.| .|+|.++. +++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~ 53 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGR 53 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCC
Confidence 345799999999999999999999999955 99988775 443
No 139
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=97.32 E-value=0.00016 Score=55.68 Aligned_cols=75 Identities=13% Similarity=0.217 Sum_probs=51.2
Q ss_pred CHHHHHHHHhhCCceeeecCCceEEecCCCCCCccCCCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 128 NHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 128 d~~~I~~ALk~S~~levsedg~~VRR~~plp~~~~~~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
+.+....|++.. ..+ +|..|+-....+.. .....++|||.++|.+++.++|+++|++||.|..|++.++..+++
T Consensus 54 ~~~~a~~A~~~~--~~~--~g~~i~v~~~~~~~--~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~ 127 (167)
T 2cjk_A 54 KPSSVDEVVKTQ--HIL--DGKVIDPKRAIPRD--EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQ 127 (167)
T ss_dssp STHHHHHHHHSC--CEE--TTEECCCEECCCHH--HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSST
T ss_pred cHHHHHHHHhcc--ccc--CCeEcccccccchh--hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCc
Confidence 456667777742 234 34444322222111 112357999999999999999999999999999999988766554
Q ss_pred c
Q 041714 208 S 208 (214)
Q Consensus 208 ~ 208 (214)
+
T Consensus 128 ~ 128 (167)
T 2cjk_A 128 S 128 (167)
T ss_dssp T
T ss_pred c
Confidence 3
No 140
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.30 E-value=0.00017 Score=54.09 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=33.3
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
.++|||.+||.+++.++|+++|++||.|..|+|.++
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~ 51 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 51 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC
Confidence 579999999999999999999999999999999765
No 141
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.30 E-value=0.00033 Score=49.67 Aligned_cols=40 Identities=20% Similarity=0.143 Sum_probs=35.4
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVE 206 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~ 206 (214)
...++|||.++|.+++.++|+++|+.| .|..|+|.+. .++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g 47 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHG 47 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTS
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCC
Confidence 346899999999999999999999999 9999999887 444
No 142
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.30 E-value=0.00051 Score=49.53 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=33.6
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhc--CCeeEEEeeC
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEA--GKIKSICIRD 201 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~--G~V~~VRmrr 201 (214)
...++|||.+||.+++.++|+++|++| |.|..|++.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~ 51 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR 51 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC
Confidence 346899999999999999999999999 9999998865
No 143
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.00024 Score=56.90 Aligned_cols=41 Identities=10% Similarity=0.067 Sum_probs=38.7
Q ss_pred ceEEeeCC----CCCCCHHHHHHHHhhcCCeeEEEeeCCCccccc
Q 041714 168 FTVLVENL----PEDHSVENMQRIFAEAGKIKSICIRDPNVVEES 208 (214)
Q Consensus 168 rTVyv~~~----P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~~ 208 (214)
..|||.+| |..++.+.|+++|+.||+|..+++..++.|+++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~s 47 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALP 47 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCce
Confidence 47999999 999999999999999999999999999999876
No 144
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=97.28 E-value=0.00021 Score=56.16 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=36.1
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCC---eeEEEeeCCCc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGK---IKSICIRDPNV 204 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~---V~~VRmrrp~~ 204 (214)
...++|||.+||.+++.++|+++|+.||. |..|+|.++..
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~ 84 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE 84 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC
Confidence 34689999999999999999999999999 89999987765
No 145
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=96.38 E-value=3.8e-05 Score=57.29 Aligned_cols=43 Identities=23% Similarity=0.355 Sum_probs=37.5
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeE--------EEeeCCCcccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKS--------ICIRDPNVVEE 207 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~--------VRmrrp~~~~~ 207 (214)
...++|||.++|.+++.++|+++|++||.|.. |+|.++..+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~ 55 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGK 55 (116)
Confidence 34679999999999999999999999999998 88887765544
No 146
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.25 E-value=0.00035 Score=56.75 Aligned_cols=37 Identities=30% Similarity=0.333 Sum_probs=35.0
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCC
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPN 203 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~ 203 (214)
.++|||.+||.+++.++|+++|++||.|..|+|.++.
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~ 124 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR 124 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence 4799999999999999999999999999999998876
No 147
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.25 E-value=0.00046 Score=48.19 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=34.3
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhc----C-------CeeEEEeeCC
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEA----G-------KIKSICIRDP 202 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~----G-------~V~~VRmrrp 202 (214)
..++|||.++|.+.+.++|+++|++| | .|..+++.++
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~ 52 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD 52 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC
Confidence 46899999999999999999999999 8 9999999865
No 148
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.24 E-value=0.00027 Score=54.59 Aligned_cols=42 Identities=17% Similarity=0.168 Sum_probs=35.6
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCe----eEEEeeCCCccccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKI----KSICIRDPNVVEES 208 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V----~~VRmrrp~~~~~~ 208 (214)
..++|||.+||.+++.++|+++|++||.| ..|+|.++ .++++
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~ 67 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRP 67 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCE
Confidence 35799999999999999999999999976 68998876 35543
No 149
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.20 E-value=0.00012 Score=53.12 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=33.8
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVE 206 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~ 206 (214)
...++|||.+||.+++.++|+++|+.||.|.. ++.++..++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g 55 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTG 55 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCC
Confidence 34689999999999999999999999999888 444444443
No 150
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.20 E-value=0.0005 Score=49.10 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=33.1
Q ss_pred CcceEEeeCCCCCCCHHHHH----HHHhhcCCeeEEEeeC
Q 041714 166 KLFTVLVENLPEDHSVENMQ----RIFAEAGKIKSICIRD 201 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~----~~F~~~G~V~~VRmrr 201 (214)
..++|||.++|.+.+.++|+ ++|++||.|..|++.+
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~ 46 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR 46 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc
Confidence 35799999999999999999 9999999999999873
No 151
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.17 E-value=0.0007 Score=56.00 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=36.1
Q ss_pred CCCcceEEeeCCCC-CCCHHHHHHHHhhcCCeeEEEeeCCC
Q 041714 164 DPKLFTVLVENLPE-DHSVENMQRIFAEAGKIKSICIRDPN 203 (214)
Q Consensus 164 ~~~~rTVyv~~~P~-d~t~e~L~~~F~~~G~V~~VRmrrp~ 203 (214)
....++|||.+||. +++.++|+++|+.||.|..|+|.+..
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~ 71 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK 71 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC
Confidence 34568999999999 99999999999999999999998764
No 152
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.15 E-value=0.00043 Score=51.01 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=32.1
Q ss_pred cceEEeeCCCCC-CCHHHHHHHHhhcCCeeEEEee
Q 041714 167 LFTVLVENLPED-HSVENMQRIFAEAGKIKSICIR 200 (214)
Q Consensus 167 ~rTVyv~~~P~d-~t~e~L~~~F~~~G~V~~VRmr 200 (214)
.++|||.++|.+ ++.++|+++|++||.|..|+|.
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~ 61 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH 61 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe
Confidence 489999999999 9999999999999999999984
No 153
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.13 E-value=0.00032 Score=55.41 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=34.2
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNV 204 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~ 204 (214)
..++|||.+||.+++.++|+++|++|| |..|+|.++..
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~ 82 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD 82 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC
Confidence 457999999999999999999999999 77999987754
No 154
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.13 E-value=0.0012 Score=55.86 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=50.7
Q ss_pred CHHHHHHHHhhCCceeeecCCceEEecCCCCCCc---cCCCCcceEEeeCCCCC-CCHHHHHHHHhhcCCeeEEEeeCCC
Q 041714 128 NHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTE---VRDPKLFTVLVENLPED-HSVENMQRIFAEAGKIKSICIRDPN 203 (214)
Q Consensus 128 d~~~I~~ALk~S~~levsedg~~VRR~~plp~~~---~~~~~~rTVyv~~~P~d-~t~e~L~~~F~~~G~V~~VRmrrp~ 203 (214)
+.+....|++.-.-..+..-...|+...|-.... ......++|||.++|.+ ++.++|+++|+.||.|..|++.++.
T Consensus 168 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~ 247 (292)
T 2ghp_A 168 SKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQ 247 (292)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCC
T ss_pred CHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecC
Confidence 5666777777444444432222344433332211 11234589999999999 9999999999999999999998865
Q ss_pred c
Q 041714 204 V 204 (214)
Q Consensus 204 ~ 204 (214)
.
T Consensus 248 ~ 248 (292)
T 2ghp_A 248 K 248 (292)
T ss_dssp C
T ss_pred C
Confidence 4
No 155
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.08 E-value=0.0006 Score=51.47 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=34.1
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCc
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNV 204 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~ 204 (214)
.++|+|.+||.+++.++|+++|+.| .|..|+|.+++.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~ 52 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV 52 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC
Confidence 5799999999999999999999999 899999988754
No 156
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.08 E-value=0.00046 Score=58.47 Aligned_cols=41 Identities=29% Similarity=0.446 Sum_probs=34.7
Q ss_pred CCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCc
Q 041714 164 DPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNV 204 (214)
Q Consensus 164 ~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~ 204 (214)
+...++|||.+||.+++.++|+++|+.||.|..|+|.++..
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 78 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK 78 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC
Confidence 34568999999999999999999999999999999987653
No 157
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.07 E-value=0.0016 Score=54.80 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=51.8
Q ss_pred CCHHHHHHHHhhCCceeeecCCceEEecCCCCCCccCCCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccc
Q 041714 127 RNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVE 206 (214)
Q Consensus 127 ~d~~~I~~ALk~S~~levsedg~~VRR~~plp~~~~~~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~ 206 (214)
.+.+....|++.-....+. |..++=.. ....++|||.++|.+++.++|+++|+.||.|..|++.++..++
T Consensus 65 ~~~~~A~~A~~~l~~~~~~--g~~i~v~~--------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g 134 (284)
T 3smz_A 65 LNGEQAEAAINAFHQSRLR--ERELSVQL--------QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTG 134 (284)
T ss_dssp SSHHHHHHHHHHHTTCEET--TEECEEEE--------CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC
T ss_pred CCHHHHHHHHHHcCCCeeC--CeEEEEEe--------cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCC
Confidence 4667777888754433443 33332110 1234799999999999999999999999999999998876665
Q ss_pred cc
Q 041714 207 ES 208 (214)
Q Consensus 207 ~~ 208 (214)
++
T Consensus 135 ~~ 136 (284)
T 3smz_A 135 QS 136 (284)
T ss_dssp CE
T ss_pred cc
Confidence 43
No 158
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.06 E-value=0.0007 Score=51.37 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=32.7
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcC-CeeEEEee
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAG-KIKSICIR 200 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G-~V~~VRmr 200 (214)
..++|||.|||.+++.++|+++|++|| .|..+++.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~ 62 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVN 62 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEE
Confidence 357999999999999999999999999 99999985
No 159
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.98 E-value=0.00022 Score=53.86 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=33.0
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
..++|||.+||.+++.++|+++|+.||.|..+.+.....+++
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~ 65 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGK 65 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 458999999999999999999999999998733333333443
No 160
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=96.98 E-value=0.0018 Score=54.62 Aligned_cols=70 Identities=13% Similarity=0.078 Sum_probs=48.7
Q ss_pred CCHHHHHHHHhhCCceeeecCCceEEecCCCCCCccCCCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccc
Q 041714 127 RNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVE 206 (214)
Q Consensus 127 ~d~~~I~~ALk~S~~levsedg~~VRR~~plp~~~~~~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~ 206 (214)
.+.+....|++.-.-..+. |..++-.. ....++|||.++|.+++.++|+++|+.||.|..|++.++ .++
T Consensus 66 ~~~~~A~~A~~~l~g~~i~--g~~l~v~~--------a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g 134 (261)
T 3sde_A 66 ESRTLAEIAKAELDGTILK--SRPLRIRF--------ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRG 134 (261)
T ss_dssp SSHHHHHHHHHHHTTCEET--TEECEEEE--------CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTS
T ss_pred CCHHHHHHHHHHcCCcEEC--CceeEeee--------cccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCC
Confidence 3566667777643333443 43332211 112469999999999999999999999999999999876 344
Q ss_pred c
Q 041714 207 E 207 (214)
Q Consensus 207 ~ 207 (214)
+
T Consensus 135 ~ 135 (261)
T 3sde_A 135 R 135 (261)
T ss_dssp C
T ss_pred C
Confidence 3
No 161
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.97 E-value=0.00081 Score=48.39 Aligned_cols=35 Identities=31% Similarity=0.550 Sum_probs=30.7
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEee
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIR 200 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmr 200 (214)
...++|||.++|.+++.++|+++|++||.|. +++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~ 51 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLT 51 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEE
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEE
Confidence 3468999999999999999999999999996 5554
No 162
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=96.97 E-value=0.0013 Score=55.61 Aligned_cols=38 Identities=26% Similarity=0.482 Sum_probs=35.0
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
...++|||.+||.+++.++|+++|+.||.|..|+|.+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 57 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD 57 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC
Confidence 44689999999999999999999999999999999765
No 163
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=96.95 E-value=0.00091 Score=61.78 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=37.1
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCcccc
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEE 207 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~ 207 (214)
.++|||.+||.+++.++|.++|+.||.|+.|.|..+..++.
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~ 142 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGK 142 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCC
Confidence 57999999999999999999999999999999988765554
No 164
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=96.93 E-value=0.0032 Score=48.87 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=46.6
Q ss_pred CCHHHHHHHHhhCCceeeecCCceEEecCCCCCCccCCCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEE
Q 041714 127 RNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSI 197 (214)
Q Consensus 127 ~d~~~I~~ALk~S~~levsedg~~VRR~~plp~~~~~~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~V 197 (214)
.+.+....||+ -.-..+. |..++=....+.........++|||.++|.+++.++|+++|++||.|..+
T Consensus 62 ~~~~~a~~A~~-l~g~~~~--g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~ 129 (175)
T 1fje_B 62 ESAEDLEKALE-LTGLKVF--GNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV 129 (175)
T ss_dssp SSHHHHHHHHH-GGGEEET--TEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE
T ss_pred CCHHHHHHHHh-cCCCEeC--CeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe
Confidence 45677778884 3334554 44444322222222233456899999999999999999999999999877
No 165
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.91 E-value=0.00074 Score=48.02 Aligned_cols=35 Identities=9% Similarity=0.299 Sum_probs=31.2
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCC-eeEEEee
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGK-IKSICIR 200 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~-V~~VRmr 200 (214)
..++|||.++|.+.+.++|+++|++||. |..+.++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~ 42 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL 42 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc
Confidence 4579999999999999999999999999 7777664
No 166
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=96.84 E-value=0.0017 Score=50.51 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=33.7
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCee--EEEeeCCCc
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIK--SICIRDPNV 204 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~--~VRmrrp~~ 204 (214)
..++|||.+||.+++.++|+++|+.| .|. .|+|.++..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~ 80 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE 80 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC
Confidence 45799999999999999999999999 566 899988765
No 167
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=96.80 E-value=0.002 Score=49.91 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=31.2
Q ss_pred cceEEeeCCCCCCCHHHHH----HHHhhcCCeeEEEeeC
Q 041714 167 LFTVLVENLPEDHSVENMQ----RIFAEAGKIKSICIRD 201 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~----~~F~~~G~V~~VRmrr 201 (214)
.++|||.+||.+.+.++|+ ++|++||.|..|++.+
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~ 67 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL 67 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc
Confidence 5799999999999988765 7999999999999865
No 168
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=96.80 E-value=0.0024 Score=53.75 Aligned_cols=76 Identities=11% Similarity=-0.034 Sum_probs=49.9
Q ss_pred CCHHHHHHHHhhCCceeeecCCceEEecCCCCCCccCCCCcceEEeeCCCCCC-CHHHHHHHHhhcCCeeEEEeeCCC
Q 041714 127 RNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDH-SVENMQRIFAEAGKIKSICIRDPN 203 (214)
Q Consensus 127 ~d~~~I~~ALk~S~~levsedg~~VRR~~plp~~~~~~~~~rTVyv~~~P~d~-t~e~L~~~F~~~G~V~~VRmrrp~ 203 (214)
.+.+....|++.-.-..+..-...|....+-... ......++|||.++|.+. +.++|+++|+.||.|..|++.++.
T Consensus 145 ~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~-~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~ 221 (284)
T 3smz_A 145 MKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT-PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ 221 (284)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC-TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS
T ss_pred CCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC-cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC
Confidence 3566677777554434443222234333221111 122346799999999995 999999999999999999988754
No 169
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=96.79 E-value=0.0058 Score=51.34 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=34.5
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCC
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPN 203 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~ 203 (214)
..++|||.++|.+++.++|+++|++||.|..|++.+.+
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC
Confidence 34789999999999999999999999999999998643
No 170
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.78 E-value=0.0012 Score=47.71 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=27.8
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCe
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKI 194 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V 194 (214)
...++|||.+||.+++.++|+++|++||.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v 42 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI 42 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE
Confidence 346899999999999999999999999988
No 171
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.74 E-value=0.0011 Score=47.37 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=30.8
Q ss_pred CCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEE
Q 041714 164 DPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSI 197 (214)
Q Consensus 164 ~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~V 197 (214)
....++|||.++|.+.+.++|+++|+.||.|..+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~ 46 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV 46 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe
Confidence 3456899999999999999999999999999877
No 172
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.68 E-value=0.0025 Score=46.84 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=30.4
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCe----eEEEee
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKI----KSICIR 200 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V----~~VRmr 200 (214)
..++|||.+||.+++.++|+++|+.||.| ..+++.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~ 62 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM 62 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC
Confidence 35899999999999999999999999999 455544
No 173
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.65 E-value=0.0032 Score=45.15 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=30.6
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeC
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRD 201 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrr 201 (214)
..++|||.++ +++.++|+++|++||.|..|+|.+
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~ 47 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP 47 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC
Confidence 4579999995 889999999999999999999964
No 174
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=96.64 E-value=0.01 Score=48.94 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=32.6
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcC-CeeEEEeeC
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAG-KIKSICIRD 201 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G-~V~~VRmrr 201 (214)
.++|||.++|.+.+.++|+++|++|| .|..|++.+
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 47899999999999999999999999 999999943
No 175
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.61 E-value=0.002 Score=50.29 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=36.4
Q ss_pred CCcceEEeeCCCCC-CCHHHHHHHHhhcCCeeEEEeeCCCcc
Q 041714 165 PKLFTVLVENLPED-HSVENMQRIFAEAGKIKSICIRDPNVV 205 (214)
Q Consensus 165 ~~~rTVyv~~~P~d-~t~e~L~~~F~~~G~V~~VRmrrp~~~ 205 (214)
...+.|||.+++.+ ++.++|+++|++||.|++|.+.+...+
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~t 57 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKE 57 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCE
Confidence 34689999999999 999999999999999999999876544
No 176
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=96.58 E-value=0.0024 Score=47.47 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=33.2
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
..+|||.|++..++.+.|+++|.+||+|.++++..+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~ 42 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN 42 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC
Confidence 458999999999999999999999999999999764
No 177
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.57 E-value=0.0018 Score=49.76 Aligned_cols=35 Identities=11% Similarity=0.248 Sum_probs=31.8
Q ss_pred cceEEe--eCCCCCCCHHHHHHHHhhcCCeeEEEeeC
Q 041714 167 LFTVLV--ENLPEDHSVENMQRIFAEAGKIKSICIRD 201 (214)
Q Consensus 167 ~rTVyv--~~~P~d~t~e~L~~~F~~~G~V~~VRmrr 201 (214)
.++||| .+++.+++.++|+++|++||.|..|+|..
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~ 61 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP 61 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC
Confidence 468999 55999999999999999999999999874
No 178
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=96.55 E-value=0.0024 Score=52.22 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=32.8
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeC
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRD 201 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrr 201 (214)
...+|||.+++.+.+.++|+++|++||.|..|+|.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~ 80 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT 80 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 356899999999999999999999999999999853
No 179
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=96.52 E-value=0.0025 Score=50.08 Aligned_cols=35 Identities=23% Similarity=0.404 Sum_probs=32.5
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeC
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRD 201 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrr 201 (214)
...|||.+++...+.++|.++|++||.|..|+|.+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~ 62 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT 62 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc
Confidence 46799999999999999999999999999999864
No 180
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=96.52 E-value=0.012 Score=46.73 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=32.8
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcC-CeeEEEeeC
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAG-KIKSICIRD 201 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G-~V~~VRmrr 201 (214)
.++|||.++|.+.+.++|+++|++|| .|..|++.+
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~ 155 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 155 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESS
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEe
Confidence 57899999999999999999999999 999999954
No 181
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.43 E-value=0.0031 Score=48.94 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=31.8
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeC
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRD 201 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrr 201 (214)
...|||.+++..++.++|+++|++||.|..|+|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~ 59 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK 59 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 35688999999999999999999999999999864
No 182
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=96.40 E-value=0.0046 Score=46.14 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=33.6
Q ss_pred cceEEeeCCCC-----CCCHHHHHHHHhhcCCeeEEEeeCCCcccccccc
Q 041714 167 LFTVLVENLPE-----DHSVENMQRIFAEAGKIKSICIRDPNVVEESKKK 211 (214)
Q Consensus 167 ~rTVyv~~~P~-----d~t~e~L~~~F~~~G~V~~VRmrrp~~~~~~~Kg 211 (214)
.++|+++++.. +.+.++|++.|++||+|..|+|.+++.++..-||
T Consensus 8 s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G 57 (105)
T 2pe8_A 8 TKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAV 57 (105)
T ss_dssp CSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSE
T ss_pred CCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcE
Confidence 57899999852 2367899999999999999999887554322344
No 183
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=96.38 E-value=0.0022 Score=45.32 Aligned_cols=33 Identities=21% Similarity=0.445 Sum_probs=31.1
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEee
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAGKIKSICIR 200 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmr 200 (214)
.++|||.++|.+.+.++|+++|++| .|..|+|.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~ 37 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD 37 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe
Confidence 5799999999999999999999999 99999984
No 184
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=96.35 E-value=0.0031 Score=51.98 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=33.6
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcCCe--eEEEeeCCC
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAGKI--KSICIRDPN 203 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G~V--~~VRmrrp~ 203 (214)
.++|||.++|.+++.++|+++|++||.| ..|++.+..
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~ 161 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK 161 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC
Confidence 3689999999999999999999999999 899987654
No 185
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=96.24 E-value=0.0049 Score=46.82 Aligned_cols=49 Identities=18% Similarity=0.229 Sum_probs=31.5
Q ss_pred eEEecCCCCCCccCCCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeC
Q 041714 150 KVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRD 201 (214)
Q Consensus 150 ~VRR~~plp~~~~~~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrr 201 (214)
..+|..+.+... .....++|||.++ +++.++|+++|++||.|..|+|.+
T Consensus 23 ~~~r~~~~~~~~-~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~ 71 (121)
T 2bz2_A 23 PFRRSDSFPERR-APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP 71 (121)
T ss_dssp -------------CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET
T ss_pred CCCCCCCCCCCC-CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC
Confidence 345555555432 2234689999995 689999999999999999999974
No 186
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=96.24 E-value=0.0024 Score=49.01 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=28.4
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhcCCeeE
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEAGKIKS 196 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~ 196 (214)
.++|||.+||.+++.++|+++|+.||.|..
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~ 74 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSS 74 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGGCCTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCccc
Confidence 579999999999999999999999999886
No 187
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.05 E-value=0.0048 Score=53.13 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=33.9
Q ss_pred CCCcceEEeeCCCCCC---------CHHHHHHHHhhcCCeeEEEeeC
Q 041714 164 DPKLFTVLVENLPEDH---------SVENMQRIFAEAGKIKSICIRD 201 (214)
Q Consensus 164 ~~~~rTVyv~~~P~d~---------t~e~L~~~F~~~G~V~~VRmrr 201 (214)
+...+||||.+|+.++ +.++|+++|++||.|..|+|.+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~ 177 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE 177 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC
Confidence 3456899999999987 6899999999999999999985
No 188
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.97 E-value=0.0079 Score=43.17 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=30.3
Q ss_pred CCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCCCccc
Q 041714 165 PKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVE 206 (214)
Q Consensus 165 ~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp~~~~ 206 (214)
...++|||.+||.+++.++|+++|+.|+. |++.++..++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~---~~~~~~~~~~ 51 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVR---ARIVTDRETG 51 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSE---EEEEECSSSC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeE---EEEEecCCCC
Confidence 44689999999999999999999998864 4444444443
No 189
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=95.60 E-value=0.018 Score=58.19 Aligned_cols=91 Identities=26% Similarity=0.470 Sum_probs=70.3
Q ss_pred CCCCcHHHHHHHHhchhhhcCCCCCCcChHHHHhh----hcCCC--CceehHHHhch-hhhhhhcC--------C----H
Q 041714 69 PAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLI----RKNKE--GFVPISVIASF-RKLKRLTR--------N----H 129 (214)
Q Consensus 69 ~~~~~~~l~~~I~kQvEyYFSd~NL~~D~fL~~~~----~~~~e--G~VpI~~i~sF-~Rmk~lt~--------d----~ 129 (214)
...++++..+.|+.+|.|.|||+=|.-.+=|..++ +++.+ |.||+++|+.+ -|+..++. | .
T Consensus 100 ~~~~~~~~~~~~~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~~~~~~~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~ 179 (950)
T 3htx_A 100 DDLTVDEARDEIVGRIKYIFSDEFLSAEHPLGAHLRAALRRDGERCGSVPVSVIATVDAKINSRCKIINPSVESDPFLAI 179 (950)
T ss_dssp CCCCHHHHHHHHHHHHHHHTSTGGGGCSSTHHHHHHHHHTSCGGGTTEECHHHHHHTCHHHHHHHHHHCTHHHHCTHHHH
T ss_pred cCcchhhHHHHHHHHHHHHhhhhhhhccCchHHHHHHHHhhcCccccccchhhheehhhhhhhhhhhcCcccccChHHHH
Confidence 34677899999999999999999887776555554 44544 88999999999 55555543 1 4
Q ss_pred HHHHHHHhhCCceeeecCCceEEecCCCCCC
Q 041714 130 AWIVAALRESSLLVVSSNGKKVKRLNPLPVT 160 (214)
Q Consensus 130 ~~I~~ALk~S~~levsedg~~VRR~~plp~~ 160 (214)
++|.+|.+.++-+.+++.+ .|+|..|+|..
T Consensus 180 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 209 (950)
T 3htx_A 180 SYVMKAAAKLADYIVASPH-GLRRKNAYPSE 209 (950)
T ss_dssp HHHHHHHHHCCSSEEEETT-EEEESSCCCHH
T ss_pred HHHHHHhhcCCCcEEeCCc-ccccCCCCCHH
Confidence 6788888888666687766 99999999854
No 190
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=95.02 E-value=0.0062 Score=47.19 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=29.7
Q ss_pred CCCcceEEeeCCCCCCCHHHHHHHHhhcCCeeEE
Q 041714 164 DPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSI 197 (214)
Q Consensus 164 ~~~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~V 197 (214)
....++|||.+||.+++.++|+++|..||.|..+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~ 43 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDL 43 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE
Confidence 3457899999999999999999999999987663
No 191
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.98 E-value=0.025 Score=42.56 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=26.0
Q ss_pred ceEEeeCCCCCCCHHH----HHHHHhhcC-CeeEE
Q 041714 168 FTVLVENLPEDHSVEN----MQRIFAEAG-KIKSI 197 (214)
Q Consensus 168 rTVyv~~~P~d~t~e~----L~~~F~~~G-~V~~V 197 (214)
.++||.++|...+.++ |.++|++|| +|..|
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V 44 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI 44 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE
Confidence 3599999999999887 558999995 99887
No 192
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=94.14 E-value=0.037 Score=49.97 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=31.1
Q ss_pred cceEEeeCC--CCCCCHHHHHHHHhhcCCeeEEEeeC
Q 041714 167 LFTVLVENL--PEDHSVENMQRIFAEAGKIKSICIRD 201 (214)
Q Consensus 167 ~rTVyv~~~--P~d~t~e~L~~~F~~~G~V~~VRmrr 201 (214)
.+++||.|+ +..++.++|+++|++||+|..|+|.+
T Consensus 18 s~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~ 54 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP 54 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC
Confidence 469999884 67899999999999999999999864
No 193
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.82 E-value=0.095 Score=38.53 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=28.8
Q ss_pred CcceEEeeCCCCCC-----------CHHHHHHHHhhcCCeeEEEeeCC
Q 041714 166 KLFTVLVENLPEDH-----------SVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 166 ~~rTVyv~~~P~d~-----------t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
..++|+++++.... +.++|+++|++||.|..|.|.+.
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~ 61 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR 61 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecC
Confidence 35799999983322 24789999999999999988543
No 194
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=93.44 E-value=0.074 Score=39.37 Aligned_cols=39 Identities=28% Similarity=0.312 Sum_probs=30.3
Q ss_pred cceEEeeCC--CCCC--------CHHHHHHHHhhcCCeeEEEeeCCCcc
Q 041714 167 LFTVLVENL--PEDH--------SVENMQRIFAEAGKIKSICIRDPNVV 205 (214)
Q Consensus 167 ~rTVyv~~~--P~d~--------t~e~L~~~F~~~G~V~~VRmrrp~~~ 205 (214)
.++|+++++ |.+. ..++|++.|++||.|..|+|.++..+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~ 53 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDG 53 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTT
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCC
Confidence 357777876 3333 34789999999999999999988654
No 195
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.07 E-value=0.14 Score=37.86 Aligned_cols=25 Identities=12% Similarity=0.311 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEeeC
Q 041714 177 EDHSVENMQRIFAEAGKIKSICIRD 201 (214)
Q Consensus 177 ~d~t~e~L~~~F~~~G~V~~VRmrr 201 (214)
.+++.++|+++|++||.|..|+|.+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~ 51 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS 51 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc
Confidence 4578999999999999999999973
No 196
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=90.42 E-value=0.22 Score=37.84 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=29.5
Q ss_pred cceEEeeCC--CCCC---CHHHHHHHHhhcCCeeEEEeeCCCc
Q 041714 167 LFTVLVENL--PEDH---SVENMQRIFAEAGKIKSICIRDPNV 204 (214)
Q Consensus 167 ~rTVyv~~~--P~d~---t~e~L~~~F~~~G~V~~VRmrrp~~ 204 (214)
.++|+++++ |.+. ..++|++.|++||.|..|+|.++..
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~ 62 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQ 62 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCC
Confidence 457777776 3222 3689999999999999999998765
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=87.00 E-value=0.16 Score=37.41 Aligned_cols=21 Identities=10% Similarity=0.197 Sum_probs=16.5
Q ss_pred HHHHHH-hhcCCeeEEEeeCCC
Q 041714 183 NMQRIF-AEAGKIKSICIRDPN 203 (214)
Q Consensus 183 ~L~~~F-~~~G~V~~VRmrrp~ 203 (214)
+|++.| ++||+|..|+|.++.
T Consensus 42 dl~~~f~~~~G~V~~v~i~~~~ 63 (104)
T 1jmt_A 42 EVFTEMEEKYGEVEEMNVCDNL 63 (104)
T ss_dssp HHHHHHHHHTCCEEEEEECCSS
T ss_pred HHHHHhhccCCceEEEEEEeCC
Confidence 444555 999999999998764
No 198
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=86.78 E-value=0.79 Score=37.97 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=36.2
Q ss_pred hcCCCCceehHHHhchhhhh--hhcCCHHHHHHHHhhCC--ceeeecCCceEEecC
Q 041714 104 RKNKEGFVPISVIASFRKLK--RLTRNHAWIVAALRESS--LLVVSSNGKKVKRLN 155 (214)
Q Consensus 104 ~~~~eG~VpI~~i~sF~Rmk--~lt~d~~~I~~ALk~S~--~levsedg~~VRR~~ 155 (214)
..|++|||+|+.|+. .+.+ ....+.+.|.+++++++ -.+++. .+||-.+
T Consensus 23 ~ld~~G~v~v~~LL~-~~~~~~~~~~t~~~l~~vV~~~~K~Rf~l~~--~~IRA~q 75 (186)
T 1wfx_A 23 RLTREGWARVSEVVE-GLRKAGWSWVEEWHIVGVALHDPKGRYELRN--GEIRARY 75 (186)
T ss_dssp CCCTTCCEEHHHHHH-HHHHTTCTTCCHHHHHHHHHHCSSCCEEEET--TEEEESS
T ss_pred ccCCCCCEEHHHHHh-hhhhcccCCCCHHHHHHHHhcCCCCceEeec--cEEEecc
Confidence 457899999999998 4433 34457888999998775 477874 4888754
No 199
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=85.29 E-value=0.59 Score=35.20 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=27.5
Q ss_pred cceEEeeCC--CCCC--------CHHHHHHHHhhcCCeeEEEeeCCC
Q 041714 167 LFTVLVENL--PEDH--------SVENMQRIFAEAGKIKSICIRDPN 203 (214)
Q Consensus 167 ~rTVyv~~~--P~d~--------t~e~L~~~F~~~G~V~~VRmrrp~ 203 (214)
.++|+++++ |.+. ..++|++.|++||.|..|.+.++.
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~ 53 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS 53 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC
Confidence 356777776 3221 256889999999999999998764
No 200
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=77.93 E-value=2.9 Score=31.51 Aligned_cols=25 Identities=20% Similarity=0.555 Sum_probs=22.1
Q ss_pred eEEeeCCCCCCCHHHHHHHHhhcCCe
Q 041714 169 TVLVENLPEDHSVENMQRIFAEAGKI 194 (214)
Q Consensus 169 TVyv~~~P~d~t~e~L~~~F~~~G~V 194 (214)
.+++ +||.++...+|+++|+.||-|
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv 42 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNI 42 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSC
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCE
Confidence 4556 999999999999999999955
No 201
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.55 E-value=2.5 Score=31.22 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.2
Q ss_pred HHHHHHHHhhcCCeeEEEeeCCC
Q 041714 181 VENMQRIFAEAGKIKSICIRDPN 203 (214)
Q Consensus 181 ~e~L~~~F~~~G~V~~VRmrrp~ 203 (214)
+.+|.+.|++||+|..||+..++
T Consensus 29 ~~~L~~~F~~~G~Vi~vr~~~d~ 51 (91)
T 2dnr_A 29 IDELLQQFASFGEVILIRFVEDK 51 (91)
T ss_dssp HHHHHHHHHTTCCEEEEEECSSS
T ss_pred HHHHHHHHHhCCCeEEEEEecCC
Confidence 46899999999999999988754
No 202
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=73.31 E-value=2.7 Score=31.76 Aligned_cols=25 Identities=20% Similarity=0.555 Sum_probs=21.6
Q ss_pred eEEeeCCCCCCCHHHHHHHHhhcCCe
Q 041714 169 TVLVENLPEDHSVENMQRIFAEAGKI 194 (214)
Q Consensus 169 TVyv~~~P~d~t~e~L~~~F~~~G~V 194 (214)
.+++ +||.++...+|+.+|+.||-|
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv 32 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI 32 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE
Confidence 3455 999999999999999999944
No 203
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=61.64 E-value=3.9 Score=38.22 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=28.9
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeCC
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDP 202 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrrp 202 (214)
..|||+|. +|.+.+..+|.++|++||.|.++-|=+.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~ 87 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES 87 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc
Confidence 46899998 6888999999999999999999988643
No 204
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.16 E-value=5.7 Score=29.55 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=26.7
Q ss_pred ceEEeeCCCCC------CC---HHHHHHHHhhcCCeeEEEeeCCC
Q 041714 168 FTVLVENLPED------HS---VENMQRIFAEAGKIKSICIRDPN 203 (214)
Q Consensus 168 rTVyv~~~P~d------~t---~e~L~~~F~~~G~V~~VRmrrp~ 203 (214)
-||+|.-++.. .. +.+|.+.|+.||+|..||+..++
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~ 60 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ 60 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc
Confidence 37777765521 22 46799999999999999987654
No 205
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.15 E-value=19 Score=27.14 Aligned_cols=36 Identities=22% Similarity=0.137 Sum_probs=30.7
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhh-c----CCeeEEEeeC
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAE-A----GKIKSICIRD 201 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~-~----G~V~~VRmrr 201 (214)
..++|.|+++|.+...+.|+-+|+. . |.|..|+...
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~ 47 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG 47 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC
Confidence 3579999999999999999999996 2 5999998754
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=56.45 E-value=5.1 Score=32.25 Aligned_cols=27 Identities=7% Similarity=0.063 Sum_probs=22.5
Q ss_pred CCHHHHHHHHhhcCCeeEEEeeCCCcc
Q 041714 179 HSVENMQRIFAEAGKIKSICIRDPNVV 205 (214)
Q Consensus 179 ~t~e~L~~~F~~~G~V~~VRmrrp~~~ 205 (214)
...++|.+.|++||+|.+|.+.++...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~ 167 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQG 167 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCC
Confidence 346789999999999999999876544
No 207
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=54.53 E-value=15 Score=28.28 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=28.4
Q ss_pred CcceEEeeCCCCCCCHHHHHHHHhhcCCeeEEEe
Q 041714 166 KLFTVLVENLPEDHSVENMQRIFAEAGKIKSICI 199 (214)
Q Consensus 166 ~~rTVyv~~~P~d~t~e~L~~~F~~~G~V~~VRm 199 (214)
..+.|.|-|||... ...|...|++||.|...+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~ 55 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM 55 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc
Confidence 46799999999984 6778899999999998876
No 208
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=52.30 E-value=24 Score=27.23 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=34.1
Q ss_pred cceEEeeCCCCCCCHHHHHHHHhhc-----CCeeEEEeeCCC
Q 041714 167 LFTVLVENLPEDHSVENMQRIFAEA-----GKIKSICIRDPN 203 (214)
Q Consensus 167 ~rTVyv~~~P~d~t~e~L~~~F~~~-----G~V~~VRmrrp~ 203 (214)
.|||-+-++|..++...|+++..++ |.++.|-++-++
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH 62 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF 62 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC
Confidence 6899999999999999999999999 999999887664
No 209
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=41.30 E-value=18 Score=29.66 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=18.2
Q ss_pred HHHHHHHHhhcCCeeEEEeeC
Q 041714 181 VENMQRIFAEAGKIKSICIRD 201 (214)
Q Consensus 181 ~e~L~~~F~~~G~V~~VRmrr 201 (214)
...|.++|+.||.|..|++.+
T Consensus 27 ~~~L~~~F~~~G~i~~v~~~~ 47 (282)
T 3pgw_A 27 KKSLYAIFSQFGQILDILVSR 47 (282)
T ss_pred HHHHHHHHhccCCeEEEEEcC
Confidence 345789999999999999986
No 210
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=37.50 E-value=33 Score=23.66 Aligned_cols=54 Identities=11% Similarity=0.223 Sum_probs=36.2
Q ss_pred HHHHHhchhhhcCCCCCCcChHHHHhhhcCCCCce--ehHHHhchhhhhhhcCCHHHHHHHHh
Q 041714 77 KQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFV--PISVIASFRKLKRLTRNHAWIVAALR 137 (214)
Q Consensus 77 ~~~I~kQvEyYFSd~NL~~D~fL~~~~~~~~eG~V--pI~~i~sF~Rmk~lt~d~~~I~~ALk 137 (214)
.+.+..||...|++.-..-=.||-..+ |.+||+ ++..|+. .+..+.+.|.++|+
T Consensus 15 ~ehL~~Ql~~~~~~~~~~Ia~~iI~~L--D~~GYL~~~l~eia~-----~l~~~~~eve~vL~ 70 (76)
T 2k9l_A 15 LEELQQNIKLELEGKEQELALELLNYL--NEKGFLSKSVEEISD-----VLRCSVEELEKVRQ 70 (76)
T ss_dssp HHHHHHHHHHHCCTTSHHHHHHHHHHC--TTSSTTCCCHHHHHH-----HHTSCHHHHHHHHH
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHhc--CCCCCCCCCHHHHHH-----HcCCCHHHHHHHHH
Confidence 888999998445554433445777766 889996 6777764 23356666766665
No 211
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=31.30 E-value=33 Score=24.58 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=16.1
Q ss_pred CCHHHHHHHHhhCCceeeecCCceEEecCCCCCCc----cCCCCcceEEeeCCCCCCCHH
Q 041714 127 RNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTE----VRDPKLFTVLVENLPEDHSVE 182 (214)
Q Consensus 127 ~d~~~I~~ALk~S~~levsedg~~VRR~~plp~~~----~~~~~~rTVyv~~~P~d~t~e 182 (214)
.+.+....||+.-.-.++..-..+|.+..+-.... .......+|||+++|.++|.+
T Consensus 53 ~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 53 ETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp SCHHHHHHHHHHHTTCEETTEECEEEESSCCCC---------------------------
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEECCCccccccccccccCCCCceEeCCCCCCcccc
Confidence 46677777887644445532222344433222111 112234579999999988765
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=30.61 E-value=60 Score=23.47 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=28.3
Q ss_pred eEEeeCCCCCCCHHHHHHHHhhcCCeeEEEeeC
Q 041714 169 TVLVENLPEDHSVENMQRIFAEAGKIKSICIRD 201 (214)
Q Consensus 169 TVyv~~~P~d~t~e~L~~~F~~~G~V~~VRmrr 201 (214)
-|+|+.||...|.+++.+.++..+++...+-..
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~ 35 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFS 35 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeC
Confidence 478999999999999999999998887766543
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.96 E-value=90 Score=23.31 Aligned_cols=33 Identities=9% Similarity=0.060 Sum_probs=26.0
Q ss_pred ceEEeeCCCCCC----CH-HHHHHHHhhcCCeeEEEee
Q 041714 168 FTVLVENLPEDH----SV-ENMQRIFAEAGKIKSICIR 200 (214)
Q Consensus 168 rTVyv~~~P~d~----t~-e~L~~~F~~~G~V~~VRmr 200 (214)
.|++|.+++.+. .. +.++++|..|+........
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l 43 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF 43 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec
Confidence 489999998764 33 7899999999988766554
No 214
>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1
Probab=24.71 E-value=76 Score=22.78 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=33.6
Q ss_pred ceehHHHhchh----hhhhhcC-C----HHHHHHHHhhCCc-eeeecCCceEEecCC
Q 041714 110 FVPISVIASFR----KLKRLTR-N----HAWIVAALRESSL-LVVSSNGKKVKRLNP 156 (214)
Q Consensus 110 ~VpI~~i~sF~----Rmk~lt~-d----~~~I~~ALk~S~~-levsedg~~VRR~~p 156 (214)
-+||..+++.. |+-.++. | ...|.+|++.|.+ |.-+.||+.||=..|
T Consensus 19 ~~pL~qvA~isv~~~r~l~I~p~D~~~~~~~IekAI~~S~LglnP~~dG~~Iri~iP 75 (84)
T 1wih_A 19 KVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIP 75 (84)
T ss_dssp EEEHHHHSEEEEEETTEEEEECTTCTTSHHHHHHHHHTTTCCCCCEEETTEEEEECC
T ss_pred CccHHHceEEEcCCCCEEEEEecccHHHHHHHHHHHHHCCCCCCcccCCCEEEEeCC
Confidence 47888888875 5444443 4 7789999999974 555578998886544
No 215
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=24.58 E-value=32 Score=23.80 Aligned_cols=35 Identities=11% Similarity=0.053 Sum_probs=22.0
Q ss_pred HhhhcCCCCceehHHHhchhhhhhhcCCHHHHHHHHh
Q 041714 101 NLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALR 137 (214)
Q Consensus 101 ~~~~~~~eG~VpI~~i~sF~Rmk~lt~d~~~I~~ALk 137 (214)
+.+.+|.+|+|....+..+= +++.-+.+.+.+.++
T Consensus 17 ~~~D~d~dG~I~~~el~~~l--~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 17 LKTDKDMDGFVSGLEVREIF--LKTGLPSTLLAHIWS 51 (95)
T ss_dssp HHHCTTCSSEECHHHHHHHH--HTTTCCHHHHHHHHH
T ss_pred HHhCCCCCCcEeHHHHHHHH--HHcCCCHHHHHHHHH
Confidence 44566889999998887662 233334555555555
No 216
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=23.04 E-value=48 Score=25.92 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=22.2
Q ss_pred ceEEeeCCCCCCCHHHHHHHHhhcCCeeE
Q 041714 168 FTVLVENLPEDHSVENMQRIFAEAGKIKS 196 (214)
Q Consensus 168 rTVyv~~~P~d~t~e~L~~~F~~~G~V~~ 196 (214)
..|.|-|||++.+ ..|-+.|++||.|..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE 35 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILE 35 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCS
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEee
Confidence 4788899988754 467779999999865
No 217
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=21.65 E-value=78 Score=22.73 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=35.1
Q ss_pred HHHHhhhcCCCCceehHHHhchhhhhhhcCC-HHHH-HHHHhhCCceeeecCCceEE
Q 041714 98 YMMNLIRKNKEGFVPISVIASFRKLKRLTRN-HAWI-VAALRESSLLVVSSNGKKVK 152 (214)
Q Consensus 98 fL~~~~~~~~eG~VpI~~i~sF~Rmk~lt~d-~~~I-~~ALk~S~~levsedg~~VR 152 (214)
||++.-....+.-+.|+.|+.--....+... .+.+ .+||+.-+.|++. ||+..=
T Consensus 19 ~mK~rh~~g~~~PltL~EILde~~~~d~~~~~k~wL~~eaL~~npkI~~~-dgkf~f 74 (81)
T 1d8j_A 19 YMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALVNNPKIEVI-DGKYAF 74 (81)
T ss_dssp HHHHHHHHTCCSCBCHHHHHHHHTCSSCCHHHHHHHHTTHHHHCTTEEEC-SSSEEE
T ss_pred HHHHhhccCCCCCccHHHHHHHHhccCCCHHHHHHHHHHHhhcCCceEEe-CCceec
Confidence 6774333345677899998775432222211 3456 8999999999998 886543
Done!