Query 041715
Match_columns 150
No_of_seqs 121 out of 334
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 16:56:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041715.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041715hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev6_A Magnesium transport pro 83.5 1.3 4.3E-05 36.3 4.6 41 71-111 289-329 (339)
2 2iub_A CORA, divalent cation t 82.2 0.94 3.2E-05 37.5 3.3 44 68-111 310-353 (363)
3 2l8s_A Integrin alpha-1; trans 68.2 3.7 0.00013 25.7 2.5 34 91-124 8-41 (54)
4 2ks1_B Epidermal growth factor 60.7 10 0.00036 22.5 3.5 19 93-111 11-29 (44)
5 2knc_A Integrin alpha-IIB; tra 55.3 7.7 0.00026 24.2 2.3 34 91-124 11-44 (54)
6 2l2t_A Receptor tyrosine-prote 47.5 16 0.00055 21.7 2.8 19 93-111 10-28 (44)
7 1kqf_C FDH-N gamma, formate de 47.3 44 0.0015 24.9 6.0 62 25-86 54-135 (217)
8 2k1a_A Integrin alpha-IIB; sin 37.2 19 0.00066 21.1 1.9 32 91-122 9-40 (42)
9 4gd3_A NI/Fe-hydrogenase 1 B-t 17.6 1E+02 0.0034 23.3 3.3 21 26-46 61-81 (235)
10 4djk_A Probable glutamate/gamm 15.4 4.6E+02 0.016 21.2 7.8 106 33-138 377-486 (511)
No 1
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=83.50 E-value=1.3 Score=36.32 Aligned_cols=41 Identities=7% Similarity=0.066 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhcccccccccCceehhhHHHHHHHHHHHHH
Q 041715 71 CVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIAL 111 (150)
Q Consensus 71 ~iiLgivNi~lGl~l~~~~~~~w~i~y~~~v~~~~~~~i~l 111 (150)
.+.+.+++++.||+..+-|...|.++|-.++++++++.+++
T Consensus 289 flP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~~~ 329 (339)
T 4ev6_A 289 FAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVIIMIF 329 (339)
T ss_dssp SSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHHHHH
Confidence 34577788999999875566668888888777777666554
No 2
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=82.16 E-value=0.94 Score=37.49 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhhcccccccccCceehhhHHHHHHHHHHHHH
Q 041715 68 GYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVCIAL 111 (150)
Q Consensus 68 Gr~~iiLgivNi~lGl~l~~~~~~~w~i~y~~~v~~~~~~~i~l 111 (150)
..+.+.+.+++++.||+..+-|.-.|.++|.+++++++++.+++
T Consensus 310 t~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~~ 353 (363)
T 2iub_A 310 ATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIM 353 (363)
T ss_dssp HHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHHH
Confidence 34556677788889998765565568899988887777766653
No 3
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=68.16 E-value=3.7 Score=25.66 Aligned_cols=34 Identities=15% Similarity=0.049 Sum_probs=22.8
Q ss_pred cCceehhhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 041715 91 SYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKSK 124 (150)
Q Consensus 91 ~~w~i~y~~~v~~~~~~~i~lEi~~~~~~~r~~~ 124 (150)
+.|.+..+++.+...++-+++-..++.-++|+++
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~~ 41 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWKIGFFKRPLK 41 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCc
Confidence 4577777777777777666665567776755554
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=60.67 E-value=10 Score=22.51 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=12.3
Q ss_pred ceehhhHHHHHHHHHHHHH
Q 041715 93 AKLAYCLCLSTLIGVCIAL 111 (150)
Q Consensus 93 w~i~y~~~v~~~~~~~i~l 111 (150)
..|+-+++.++.+++.+++
T Consensus 11 ~~IA~gVVgGv~~~~ii~~ 29 (44)
T 2ks1_B 11 PSIATGMVGALLLLLVVAL 29 (44)
T ss_dssp SSSTHHHHHHHHHHHHHHH
T ss_pred ceEEeehhHHHHHHHHHHH
Confidence 4477777776766665554
No 5
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=55.28 E-value=7.7 Score=24.16 Aligned_cols=34 Identities=12% Similarity=-0.042 Sum_probs=21.5
Q ss_pred cCceehhhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 041715 91 SYAKLAYCLCLSTLIGVCIALEVNSWVIFCRKSK 124 (150)
Q Consensus 91 ~~w~i~y~~~v~~~~~~~i~lEi~~~~~~~r~~~ 124 (150)
+.|.+..+++.+.+.++-+.+-..++.-++|+++
T Consensus 11 p~wiIi~svl~GLllL~li~~~LwK~GFFkR~~~ 44 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRP 44 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCC
Confidence 4466677777776666666655566666655544
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=47.47 E-value=16 Score=21.71 Aligned_cols=19 Identities=21% Similarity=0.109 Sum_probs=10.4
Q ss_pred ceehhhHHHHHHHHHHHHH
Q 041715 93 AKLAYCLCLSTLIGVCIAL 111 (150)
Q Consensus 93 w~i~y~~~v~~~~~~~i~l 111 (150)
..++-+++.++.+++.+.+
T Consensus 10 ~aIA~gVVgGv~~v~ii~~ 28 (44)
T 2l2t_A 10 PLIAAGVIGGLFILVIVGL 28 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEeehHHHHHHHHHHH
Confidence 3366666655655555553
No 7
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=47.30 E-value=44 Score=24.89 Aligned_cols=62 Identities=11% Similarity=0.098 Sum_probs=36.5
Q ss_pred cccchhHHHHHHHHHHHHHHHh--hhccCCCC------------------CcceeeeeeeehHHHHHHHHHHHHHhhhcc
Q 041715 25 YGLHRKLGFTAFCLGALQTLAL--LFRPKTTN------------------KFRKYWKSYHHFVGYACVVLGVVNVFQGFE 84 (150)
Q Consensus 25 ~~~H~~iGiiv~~l~~lQ~l~~--~~Rp~k~~------------------k~R~~w~~~H~~~Gr~~iiLgivNi~lGl~ 84 (150)
...|..+|++++++.++-.+-. ...|.|.+ +...-+|......-.++.++.++-+.+|+-
T Consensus 54 ~~~H~~~G~~~~~l~~~r~~r~~r~~~p~~~~~~~~~~~~~yl~~~~~~~p~~~~~n~~~~~~~~~l~~l~~~~~~TG~~ 133 (217)
T 1kqf_C 54 RILHPFFGIAIFVALMFMFVRFVHHNIPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVI 133 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGSCCCGGGHHHHHSHHHHHTTCHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999998776644411 11233221 111234555555545666677777778877
Q ss_pred cc
Q 041715 85 VM 86 (150)
Q Consensus 85 l~ 86 (150)
+.
T Consensus 134 ~~ 135 (217)
T 1kqf_C 134 IW 135 (217)
T ss_dssp TC
T ss_pred HH
Confidence 66
No 8
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=37.20 E-value=19 Score=21.13 Aligned_cols=32 Identities=13% Similarity=-0.037 Sum_probs=18.7
Q ss_pred cCceehhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 041715 91 SYAKLAYCLCLSTLIGVCIALEVNSWVIFCRK 122 (150)
Q Consensus 91 ~~w~i~y~~~v~~~~~~~i~lEi~~~~~~~r~ 122 (150)
+.|.+..+++.+...++-+.+-..++.-++|+
T Consensus 9 p~wiIi~s~l~GLllL~li~~~LwK~GFFkR~ 40 (42)
T 2k1a_A 9 PIWWVLVGVLGGLLLLTILVLAMWKVGFFKRN 40 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCcccCC
Confidence 34666666666666666555544556555444
No 9
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=17.63 E-value=1e+02 Score=23.34 Aligned_cols=21 Identities=10% Similarity=-0.015 Sum_probs=17.3
Q ss_pred ccchhHHHHHHHHHHHHHHHh
Q 041715 26 GLHRKLGFTAFCLGALQTLAL 46 (150)
Q Consensus 26 ~~H~~iGiiv~~l~~lQ~l~~ 46 (150)
..|..+|++++++.++-.+..
T Consensus 61 ~~H~~~G~~~~~l~~~Rl~w~ 81 (235)
T 4gd3_A 61 LIHFSAGMVFTVVLLMRIYWA 81 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999998876543
No 10
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=15.37 E-value=4.6e+02 Score=21.22 Aligned_cols=106 Identities=13% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCcceeeee----eeehHHHHHHHHHHHHHhhhcccccccccCceehhhHHHHHHHHHH
Q 041715 33 FTAFCLGALQTLALLFRPKTTNKFRKYWKS----YHHFVGYACVVLGVVNVFQGFEVMGEGRSYAKLAYCLCLSTLIGVC 108 (150)
Q Consensus 33 iiv~~l~~lQ~l~~~~Rp~k~~k~R~~w~~----~H~~~Gr~~iiLgivNi~lGl~l~~~~~~~w~i~y~~~v~~~~~~~ 108 (150)
...+...+.+.....+|-++..+.|++.-. ..+...-..++..++.++.-+.-...+...-..-|...+....++.
T Consensus 377 ~~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 456 (511)
T 4djk_A 377 IYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVV 456 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSCCCSCCCSSTTHHHHHHHHHHHHHHHHHHHHTTCCCSCSTTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCchHHHHHHHHHHHHHHHHHHeeeeCCccccCCchHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhccccccCC
Q 041715 109 IALEVNSWVIFCRKSKEEKLRREGLIGGSD 138 (150)
Q Consensus 109 i~lEi~~~~~~~r~~~~~~~~~~~~~~~~~ 138 (150)
...=...+....|+.++...+...-...+|
T Consensus 457 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (511)
T 4djk_A 457 LALPFILYAVHDRKGKANTGVTLEPINSQN 486 (511)
T ss_dssp HHHHHHHHHCC-------------------
T ss_pred HHHHHHHHHHhhhhhhcccccccchhhhcc
Done!