BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041717
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CH9|A Chain A, Crystal Structure Of Dimeric Human Cystatin F
Length = 131
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 14 LNNNMKPGYDLTIRLEASGGLTECWNTLMEMKSCSNEIFIF 54
LN+ +KPG+ TI+ G L ++ + +C+N++F+F
Sbjct: 11 LNSRVKPGFPKTIKTNDPGVLQAARYSVEKFNNCTNDMFLF 51
>pdb|3TTS|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTY|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
Length = 675
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 68 RAIDIITRNCWPAMLTSLGFTAEEGNILRG 97
+ +D+++ + +P+M T FTA N++RG
Sbjct: 267 KEMDVVSWDNYPSMDTPFSFTAMAHNLMRG 296
>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
pdb|2X50|B Chain B, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
Length = 510
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 16 NNMKPGYDLTIRLEASGGLTECWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAI--DII 73
++M YDL + SGGL WN + K + ++ QA GP + A+ +
Sbjct: 19 SHMSRAYDLVVLGAGSGGLEAGWNAAVTHKKK-----VAVVDVQATHGPPLFAALGGTCV 73
Query: 74 TRNCWPAMLTSLG 86
C P L G
Sbjct: 74 NVGCVPKKLMVTG 86
>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2JK6|B Chain B, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2W0H|A Chain A, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2W0H|B Chain B, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2YAU|A Chain A, X-Ray Structure Of The Leishmania Infantum
Tryopanothione Reductase In Complex With Auranofin
pdb|2YAU|B Chain B, X-Ray Structure Of The Leishmania Infantum
Tryopanothione Reductase In Complex With Auranofin
pdb|4ADW|A Chain A, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
pdb|4ADW|B Chain B, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
Length = 511
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 16 NNMKPGYDLTIRLEASGGLTECWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAI--DII 73
++M YDL + SGGL WN + K + ++ QA GP + A+ +
Sbjct: 19 SHMSRAYDLVVLGAGSGGLEAGWNAAVTHKKK-----VAVVDVQATHGPPLFAALGGTCV 73
Query: 74 TRNCWPAMLTSLG 86
C P L G
Sbjct: 74 NVGCVPKKLMVTG 86
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 60 ADIGPDCYRAIDIITRNCWPAMLTSLGFTAEEG 92
A + P D + CWPA+ ++G A E
Sbjct: 1089 APLAPTLTVVPDALVGRCWPAVFAAIGSAATEA 1121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,606,664
Number of Sequences: 62578
Number of extensions: 126738
Number of successful extensions: 269
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 265
Number of HSP's gapped (non-prelim): 6
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)