Query 041717
Match_columns 131
No_of_seqs 92 out of 94
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 09:55:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 100.0 2.2E-29 4.9E-34 188.5 4.9 74 32-110 43-117 (118)
2 PF05617 Prolamin_like: Prolam 99.8 8.7E-21 1.9E-25 125.9 3.6 64 36-100 1-70 (70)
3 PLN00214 putative protein; Pro 72.8 2.8 6E-05 32.0 2.0 47 36-86 38-88 (115)
4 smart00499 AAI Plant lipid tra 31.4 21 0.00045 22.2 0.5 20 61-80 23-43 (79)
5 COG5397 Uncharacterized conser 25.5 64 0.0014 28.6 2.7 78 36-130 133-214 (349)
6 cd04660 nsLTP_like nsLTP_like: 24.9 50 0.0011 21.9 1.5 18 62-79 24-41 (73)
7 cd01960 nsLTP1 nsLTP1: Non-spe 24.8 54 0.0012 22.2 1.7 34 37-75 3-37 (89)
8 cd00010 AAI_LTSS AAI_LTSS: Alp 24.5 60 0.0013 20.3 1.8 21 55-75 7-28 (63)
9 PF09585 Lin0512_fam: Conserve 13.4 87 0.0019 23.7 0.7 27 62-88 18-45 (113)
10 COG2406 Protein distantly rela 12.9 97 0.0021 25.1 0.9 37 23-59 68-116 (172)
No 1
>PLN00213 predicted protein; Provisional
Probab=99.95 E-value=2.2e-29 Score=188.45 Aligned_cols=74 Identities=23% Similarity=0.530 Sum_probs=68.9
Q ss_pred CCchhhhhhhccCcchHHHHHHHHHhCccc-cCccchhHHHHhhcCcccchhcCCCCCcchhhhhhhccccCCCCCCCcc
Q 041717 32 GGLTECWNTLMEMKSCSNEIFIFFLNSQAD-IGPDCYRAIDIITRNCWPAMLTSLGFTAEEGNILRGYCDASSAPSPGGL 110 (131)
Q Consensus 32 ~d~~kCWsSL~~v~gC~~EI~~sflnG~~~-IGp~CCkAI~~I~~~CWP~MFps~PFtp~e~~~LKg~Cs~~~~~~P~~~ 110 (131)
.|+.||||||++++||+.||++++++||++ ||++|||||++++ +|||+| |++||||+ +||++|++++..+|+++
T Consensus 43 pd~~kCwSSl~~vpGCv~EI~~si~~gkf~~Ig~aCCKAf~~~d-nCwP~~-P~~P~fPp---~LK~~Cs~i~~~~~~~~ 117 (118)
T PLN00213 43 PDITKCFSSVMDIPGCIAEISQSIFTGKFGNLGPACCKAFLDAD-NCIPKI-PFIPFFPP---MLKEQCSRVAGATPPIP 117 (118)
T ss_pred ccHHHHHHHHcCCcchHHHHHHHHHhchhcccchHHHHHHHhhh-ccccCC-cCCCccch---HHHHHHhcccCCCCCCC
Confidence 499999999999999999999999999997 9999999999966 999995 99999998 99999999987776653
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.81 E-value=8.7e-21 Score=125.95 Aligned_cols=64 Identities=31% Similarity=0.736 Sum_probs=56.1
Q ss_pred hhhhhhccCcchHHHHHHHHHhCcc-ccCccchhHHHHhhcCcccc---hhcCCCCCcc--hhhhhhhccc
Q 041717 36 ECWNTLMEMKSCSNEIFIFFLNSQA-DIGPDCYRAIDIITRNCWPA---MLTSLGFTAE--EGNILRGYCD 100 (131)
Q Consensus 36 kCWsSL~~v~gC~~EI~~sflnG~~-~IGp~CCkAI~~I~~~CWP~---MFps~PFtp~--e~~~LKg~Cs 100 (131)
|||+++.++++|..||+.+|++|+. .||++||+||+.++++|||. ||++.|++++ + +.|+++|+
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~~~r-~~l~~~C~ 70 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDCHPALFKMFPFTPFFKPLLR-DLLWNHCS 70 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhHHHHHHHHccCCCCccchhH-HHHHhhcC
Confidence 6999999999999999999999995 49999999999999999999 5555555554 3 49999996
No 3
>PLN00214 putative protein; Provisional
Probab=72.82 E-value=2.8 Score=31.97 Aligned_cols=47 Identities=13% Similarity=0.309 Sum_probs=35.0
Q ss_pred hhhhhhccCcchHHHHHHHHH-hCccccCccchhHHHHhhcCc---ccchhcCCC
Q 041717 36 ECWNTLMEMKSCSNEIFIFFL-NSQADIGPDCYRAIDIITRNC---WPAMLTSLG 86 (131)
Q Consensus 36 kCWsSL~~v~gC~~EI~~sfl-nG~~~IGp~CCkAI~~I~~~C---WP~MFps~P 86 (131)
.|---+. +-|..||+..++ ||. +...||+-+...+.+| |=++|..-|
T Consensus 38 ~C~~Kmt--~KCa~EI~a~i~~N~t--~s~~CC~~LVk~GK~CH~~LiK~i~~~p 88 (115)
T PLN00214 38 TCLVKIT--PKCALDIIAVVFENGT--LIDPCCNDLVKEGKVCHDTLIKYIADKP 88 (115)
T ss_pred HHHhhcc--HhhHHHHHHHHHcCCC--CchHHHHHHHHHhhHHHHHHHHHHHcch
Confidence 4543333 569999999999 666 5889999999999999 555554433
No 4
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=31.42 E-value=21 Score=22.17 Aligned_cols=20 Identities=10% Similarity=0.275 Sum_probs=16.4
Q ss_pred ccCccchhHHHHh-hcCcccc
Q 041717 61 DIGPDCYRAIDII-TRNCWPA 80 (131)
Q Consensus 61 ~IGp~CCkAI~~I-~~~CWP~ 80 (131)
.....||..+..+ ...|+=.
T Consensus 23 ~p~~~CC~~l~~~~~~~C~C~ 43 (79)
T smart00499 23 PPSQQCCSQLRGLNSAQCRCL 43 (79)
T ss_pred CCchHHHHHHHHhcccCCcch
Confidence 3778899999999 8888654
No 5
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=25.51 E-value=64 Score=28.58 Aligned_cols=78 Identities=27% Similarity=0.356 Sum_probs=50.9
Q ss_pred hhhhhhccCcchHHHHHHHHHhCccccCccchhHHHHhhcCcccchhcCCCCCcchhhhhhhccccCCCCCC----Cccc
Q 041717 36 ECWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAIDIITRNCWPAMLTSLGFTAEEGNILRGYCDASSAPSP----GGLA 111 (131)
Q Consensus 36 kCWsSL~~v~gC~~EI~~sflnG~~~IGp~CCkAI~~I~~~CWP~MFps~PFtp~e~~~LKg~Cs~~~~~~P----~~~a 111 (131)
.|++-+..+.== .+++.+|..+|-.+ -||+.-.++|.|.++ ++||+. |.+-.|.| ++..
T Consensus 133 ~~Y~GlLgvrlp----~~a~~TgDaDiAqd--~aiS~evdDsl~~il----------~lLr~~-D~sFrpvPh~~d~ak~ 195 (349)
T COG5397 133 QTYSGLLGVRLP----GTAIQTGDADIAQD--YAISREVDDSLPPIL----------DLLRSV-DPSFRPVPHRSDPAKS 195 (349)
T ss_pred eeccceeeeeec----CchhhcCCchHHHh--hhhhHHhcccccHHH----------HHHhcc-CcccccCCccCCCccc
Confidence 455555544321 24556666554443 578888889988753 466643 22223344 6677
Q ss_pred ccccccceeeeehhhcccC
Q 041717 112 LIYQPQVSFFFEVLTLNRM 130 (131)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~ 130 (131)
.-||.-.++-.|+||-||-
T Consensus 196 ~~fqn~~~y~VefLTtnr~ 214 (349)
T COG5397 196 SAFQNRDGYRVEFLTTNRG 214 (349)
T ss_pred eeeecCCCeEEEEeccCcC
Confidence 8899999999999999984
No 6
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=24.93 E-value=50 Score=21.90 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=14.4
Q ss_pred cCccchhHHHHhhcCccc
Q 041717 62 IGPDCYRAIDIITRNCWP 79 (131)
Q Consensus 62 IGp~CCkAI~~I~~~CWP 79 (131)
-..+||.+|+.++..|-=
T Consensus 24 Ps~~CC~~vk~~~~~C~C 41 (73)
T cd04660 24 PSRECCAALRRADLPCLC 41 (73)
T ss_pred CCHHHHHHHHcCCcCCEe
Confidence 677899999988766753
No 7
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=24.76 E-value=54 Score=22.24 Aligned_cols=34 Identities=15% Similarity=0.438 Sum_probs=22.4
Q ss_pred hhhhhccCcchHHHHHHHHHhCccc-cCccchhHHHHhhc
Q 041717 37 CWNTLMEMKSCSNEIFIFFLNSQAD-IGPDCYRAIDIITR 75 (131)
Q Consensus 37 CWsSL~~v~gC~~EI~~sflnG~~~-IGp~CCkAI~~I~~ 75 (131)
|=..+..+..|.. |++|... -.+.||.++..+.+
T Consensus 3 C~~v~~~l~~C~~-----y~~g~~~~Ps~~CC~~v~~l~~ 37 (89)
T cd01960 3 CGQVTSLLAPCLG-----YLTGGGPAPSPACCSGVKSLNG 37 (89)
T ss_pred HHHHHhhHHhHHH-----HHhCCCCCCChHHhhhhHHHhh
Confidence 4455555666643 3445444 88899999999753
No 8
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=24.51 E-value=60 Score=20.28 Aligned_cols=21 Identities=19% Similarity=0.491 Sum_probs=15.6
Q ss_pred HHhCccc-cCccchhHHHHhhc
Q 041717 55 FLNSQAD-IGPDCYRAIDIITR 75 (131)
Q Consensus 55 flnG~~~-IGp~CCkAI~~I~~ 75 (131)
|++|... -.+.||.+++.+.+
T Consensus 7 y~~~~~~~Ps~~CC~~l~~~~~ 28 (63)
T cd00010 7 YLTGGATAPPSDCCSGLKSVVK 28 (63)
T ss_pred HHcCCCCCCChHHHHHHHHHHh
Confidence 3455544 88899999999864
No 9
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=13.40 E-value=87 Score=23.65 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=22.4
Q ss_pred cCccchhHHH-HhhcCcccchhcCCCCC
Q 041717 62 IGPDCYRAID-IITRNCWPAMLTSLGFT 88 (131)
Q Consensus 62 IGp~CCkAI~-~I~~~CWP~MFps~PFt 88 (131)
.-+++++|++ .|.++|.|.|+-..|+.
T Consensus 18 ~TkAA~RAv~DAI~~nslp~l~~~~~~~ 45 (113)
T PF09585_consen 18 YTKAAVRAVRDAISHNSLPGLFEILGLD 45 (113)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHcCCC
Confidence 5577888885 68899999999999984
No 10
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=12.94 E-value=97 Score=25.09 Aligned_cols=37 Identities=19% Similarity=0.409 Sum_probs=29.9
Q ss_pred Chhhhhh-ccCCchhhhhhhccCcch-----------HHHHHHHHHhCc
Q 041717 23 DLTIRLE-ASGGLTECWNTLMEMKSC-----------SNEIFIFFLNSQ 59 (131)
Q Consensus 23 ~l~~rl~-~~~d~~kCWsSL~~v~gC-----------~~EI~~sflnG~ 59 (131)
-++.||. .|+++-.|+.-|.++.|| +.||++..+..+
T Consensus 68 ~i~~Ri~elg~~~Prd~~~l~dISgC~~a~LPedp~D~~~~l~vlv~AE 116 (172)
T COG2406 68 LIAPRIYELGGDLPRDMKKLHDISGCKPAYLPEDPYDIDEILAVLVKAE 116 (172)
T ss_pred HHHHHHHHhCCCCchhHHHHHhhcCCCCCCCCCCccCHHHHHHHHHHHH
Confidence 3667774 689999999999999999 678877776654
Done!