Query 041717
Match_columns 131
No_of_seqs 92 out of 94
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 16:58:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebo_A Ebola virus envelope gl 13.8 32 0.0011 23.2 -0.4 9 62-70 48-56 (74)
2 1ebo_A Ebola virus envelope pr 10.9 45 0.0015 24.6 -0.4 8 62-69 85-92 (131)
3 1ry3_A Carnocin CP52, bacterio 9.9 98 0.0033 20.3 1.0 26 49-80 9-35 (64)
4 1afh_A Maize nonspecific lipid 9.0 1.6E+02 0.0056 19.4 1.9 60 37-101 4-77 (93)
5 2ljo_A Non-specific lipid-tran 8.6 1.7E+02 0.0058 19.6 1.9 20 55-74 17-36 (93)
6 1bwo_A NS-LTP1, nonspecific li 8.0 1.9E+02 0.0066 19.0 1.9 60 37-101 3-75 (90)
7 1n89_A Lipid transfer protein; 8.0 2E+02 0.0067 18.0 1.8 18 61-79 19-36 (67)
8 2knp_A Mcocc-1; disulfide-rich 7.5 68 0.0023 18.5 -0.5 10 75-84 17-26 (33)
9 2job_A Antilipopolysaccharide 7.1 90 0.0031 22.3 -0.1 22 45-66 12-34 (102)
10 1l6h_A LTP2, non-specific lipi 7.1 1.7E+02 0.0059 18.3 1.2 17 61-78 20-36 (69)
No 1
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=13.82 E-value=32 Score=23.25 Aligned_cols=9 Identities=44% Similarity=0.962 Sum_probs=7.2
Q ss_pred cCccchhHH
Q 041717 62 IGPDCYRAI 70 (131)
Q Consensus 62 IGp~CCkAI 70 (131)
+||+||-.+
T Consensus 48 lgpdc~i~~ 56 (74)
T 2ebo_A 48 LGPDCAIEP 56 (74)
T ss_dssp HGGGGGCCC
T ss_pred cCCccccCH
Confidence 999999543
No 2
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=10.89 E-value=45 Score=24.61 Aligned_cols=8 Identities=50% Similarity=1.207 Sum_probs=6.7
Q ss_pred cCccchhH
Q 041717 62 IGPDCYRA 69 (131)
Q Consensus 62 IGp~CCkA 69 (131)
+||+||--
T Consensus 85 LGPdCcIe 92 (131)
T 1ebo_A 85 LGPDCRIE 92 (131)
T ss_dssp HGGGGGCC
T ss_pred cCCccccC
Confidence 99999943
No 3
>1ry3_A Carnocin CP52, bacteriocin carnobacteriocin B2; amphipathic helix, antibiotic; NMR {Carnobacterium maltaromaticum} SCOP: j.106.1.1
Probab=9.94 E-value=98 Score=20.34 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=20.1
Q ss_pred HHHHHHHHhCccc-cCccchhHHHHhhcCcccc
Q 041717 49 NEIFIFFLNSQAD-IGPDCYRAIDIITRNCWPA 80 (131)
Q Consensus 49 ~EI~~sflnG~~~-IGp~CCkAI~~I~~~CWP~ 80 (131)
.|-++.+.-|+.+ .|+.| =.+.||..
T Consensus 9 ~~eL~~i~GG~yyGnGvyC------nk~kC~vd 35 (64)
T 1ry3_A 9 VKEMKQLHGGVNYGNGVSC------SKTKCSVN 35 (64)
T ss_dssp HHHHHTTSCCCSCTTSCCC------SSSCCCCC
T ss_pred HHHHhhhcCCeeeCCcceE------CCceeeec
Confidence 3446777888888 99999 56789985
No 4
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=9.02 E-value=1.6e+02 Score=19.40 Aligned_cols=60 Identities=15% Similarity=0.384 Sum_probs=33.5
Q ss_pred hhhhhccCcchHHHHHHHHHhCccc-cCccchhHHHHhh----------c--CcccchhcCC-CCCcchhhhhhhcccc
Q 041717 37 CWNTLMEMKSCSNEIFIFFLNSQAD-IGPDCYRAIDIIT----------R--NCWPAMLTSL-GFTAEEGNILRGYCDA 101 (131)
Q Consensus 37 CWsSL~~v~gC~~EI~~sflnG~~~-IGp~CCkAI~~I~----------~--~CWP~MFps~-PFtp~e~~~LKg~Cs~ 101 (131)
|=+.+..+..|..- +.|... -.++||.+++.+. . .|-=...+.. +.-+.-+.-|-+.|.-
T Consensus 4 C~~v~~~L~pCl~y-----~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v 77 (93)
T 1afh_A 4 CGQVASAIAPCISY-----ARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGV 77 (93)
T ss_dssp SHHHHHHHGGGHHH-----HTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHC
T ss_pred hHHHHHhccCcHHH-----HcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCC
Confidence 44445555556543 344444 6668999999995 2 3442222233 3444445667777854
No 5
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=8.64 E-value=1.7e+02 Score=19.62 Aligned_cols=20 Identities=15% Similarity=0.488 Sum_probs=14.8
Q ss_pred HHhCccccCccchhHHHHhh
Q 041717 55 FLNSQADIGPDCYRAIDIIT 74 (131)
Q Consensus 55 flnG~~~IGp~CCkAI~~I~ 74 (131)
++.|.....+.||..++.+.
T Consensus 17 Yv~g~~~p~~~CC~gv~~l~ 36 (93)
T 2ljo_A 17 YLTGGPGPSPQCCGGVKKLL 36 (93)
T ss_dssp HHTTSSCCCHHHHHHHHHHH
T ss_pred HHcCCCCCCCchhhHHHHHH
Confidence 34555458889999998885
No 6
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=8.02 E-value=1.9e+02 Score=18.99 Aligned_cols=60 Identities=10% Similarity=0.341 Sum_probs=34.2
Q ss_pred hhhhhccCcchHHHHHHHHHhCccccCccchhHHHHhhc------------CcccchhcCC-CCCcchhhhhhhcccc
Q 041717 37 CWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAIDIITR------------NCWPAMLTSL-GFTAEEGNILRGYCDA 101 (131)
Q Consensus 37 CWsSL~~v~gC~~EI~~sflnG~~~IGp~CCkAI~~I~~------------~CWP~MFps~-PFtp~e~~~LKg~Cs~ 101 (131)
|=+.+.++..|..- +.|.....++||.+++.+.. .|.-....+. ++-+.-+.-|-+.|.-
T Consensus 3 C~~v~~~L~pCl~y-----~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v 75 (90)
T 1bwo_A 3 CGHVDSLVRPCLSY-----VQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGV 75 (90)
T ss_dssp HHHHHHHHGGGHHH-----HTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTC
T ss_pred HHHHHHhhcccHHH-----HcCCCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCC
Confidence 44445555566554 33333377789999998753 4543333333 3444445667777854
No 7
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=8.00 E-value=2e+02 Score=17.96 Aligned_cols=18 Identities=11% Similarity=0.423 Sum_probs=13.8
Q ss_pred ccCccchhHHHHhhcCccc
Q 041717 61 DIGPDCYRAIDIITRNCWP 79 (131)
Q Consensus 61 ~IGp~CCkAI~~I~~~CWP 79 (131)
...++||.+++.. ..|-=
T Consensus 19 ~Ps~~CC~~lk~~-~~ClC 36 (67)
T 1n89_A 19 KPSGECCGNLRAQ-QGCFC 36 (67)
T ss_dssp CCCHHHHHHHHHH-SSHHH
T ss_pred CCCHHHHHhhCCC-CCCCC
Confidence 4888999999975 56643
No 8
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=7.51 E-value=68 Score=18.54 Aligned_cols=10 Identities=30% Similarity=1.092 Sum_probs=7.0
Q ss_pred cCcccchhcC
Q 041717 75 RNCWPAMLTS 84 (131)
Q Consensus 75 ~~CWP~MFps 84 (131)
-+|||..-|.
T Consensus 17 crcwptvtpg 26 (33)
T 2knp_A 17 CRCWPTVTPG 26 (33)
T ss_dssp CCEEECSSTT
T ss_pred eeeccccCCC
Confidence 3799987554
No 9
>2job_A Antilipopolysaccharide factor; ALF, lipid A binding protein, endotoxin, lipid binding protein; NMR {Penaeus monodon}
Probab=7.09 E-value=90 Score=22.34 Aligned_cols=22 Identities=18% Similarity=0.579 Sum_probs=16.5
Q ss_pred cchHHHHHHHHHhCccc-cCccc
Q 041717 45 KSCSNEIFIFFLNSQAD-IGPDC 66 (131)
Q Consensus 45 ~gC~~EI~~sflnG~~~-IGp~C 66 (131)
+.=+..|+....||++. +|+.|
T Consensus 12 ~~i~~kl~~Lw~~g~v~~lGH~C 34 (102)
T 2job_A 12 AAVASKIVGLWRNEKTELLGHEC 34 (102)
T ss_dssp HHHHHHHHHTCCSSCEEETTEEE
T ss_pred HHHHHHHHhheeCCCEEEcCCeE
Confidence 34456677777789998 99988
No 10
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=7.05 E-value=1.7e+02 Score=18.32 Aligned_cols=17 Identities=12% Similarity=0.485 Sum_probs=13.3
Q ss_pred ccCccchhHHHHhhcCcc
Q 041717 61 DIGPDCYRAIDIITRNCW 78 (131)
Q Consensus 61 ~IGp~CCkAI~~I~~~CW 78 (131)
...++||.+++.. ..|-
T Consensus 20 ~Ps~~CC~~lk~~-~~Cl 36 (69)
T 1l6h_A 20 RPTAACCSSLRAQ-QGCF 36 (69)
T ss_dssp STTHHHHHHHHHH-HHHH
T ss_pred CCCHHHHHhhCCC-CCCC
Confidence 4888999999975 5664
Done!