Query 041717
Match_columns 131
No_of_seqs 92 out of 94
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 16:58:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041717.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041717hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fk5a_ a.52.1.1 (A:) Plant no 17.1 31 0.0022 21.6 1.9 61 37-102 4-78 (93)
2 d1mida_ a.52.1.1 (A:) Plant no 14.5 40 0.0029 20.9 1.9 61 37-102 3-76 (91)
3 d1hssa_ a.52.1.2 (A:) 0.19 alp 6.3 88 0.0064 21.1 1.2 35 44-79 13-50 (120)
4 d2cqea2 g.66.1.1 (A:429-457) Z 6.2 67 0.0049 16.9 0.4 9 94-102 12-20 (29)
5 d1kyqa2 e.37.1.1 (A:151-273) B 5.5 1.1E+02 0.008 20.2 1.3 17 84-100 107-123 (123)
6 d1k8rb_ d.15.1.5 (B:) Protein 5.4 1.3E+02 0.0091 19.5 1.5 17 41-57 14-30 (95)
7 d1bdsa_ g.9.1.1 (A:) BDs-I def 3.9 84 0.0061 17.6 -0.3 9 73-81 28-38 (43)
8 d1gv2a2 a.4.1.3 (A:144-190) c- 3.7 1.4E+02 0.01 16.1 0.6 15 85-99 2-16 (47)
9 d1d2zb_ a.77.1.2 (B:) Tube dea 3.6 84 0.0061 22.1 -0.5 33 4-43 5-37 (150)
10 d2bbga_ g.6.1.1 (A:) Amb V all 3.6 73 0.0053 17.6 -0.7 9 62-70 14-22 (40)
No 1
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=17.09 E-value=31 Score=21.57 Aligned_cols=61 Identities=16% Similarity=0.408 Sum_probs=35.0
Q ss_pred hhhhhccCcchHHHHHHHHHhCccc-cCccchhHHHHhhc------------Ccccchhc-CCCCCcchhhhhhhccccC
Q 041717 37 CWNTLMEMKSCSNEIFIFFLNSQAD-IGPDCYRAIDIITR------------NCWPAMLT-SLGFTAEEGNILRGYCDAS 102 (131)
Q Consensus 37 CWsSL~~v~gC~~EI~~sflnG~~~-IGp~CCkAI~~I~~------------~CWP~MFp-s~PFtp~e~~~LKg~Cs~~ 102 (131)
|=..+..+-.|.. |++|... -.+.||.+++.+.+ +|.=.... ..|+-+.-..-|=.-|.-.
T Consensus 4 C~~v~~~l~pCl~-----Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~ 78 (93)
T d1fk5a_ 4 CGQVASAIAPCIS-----YARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVS 78 (93)
T ss_dssp HHHHHHHHGGGHH-----HHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhhhHH-----HHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCCC
Confidence 4444455555533 4566655 78899999998863 22322222 2345555555677788533
No 2
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=14.48 E-value=40 Score=20.95 Aligned_cols=61 Identities=13% Similarity=0.398 Sum_probs=34.7
Q ss_pred hhhhhccCcchHHHHHHHHHhCccccCccchhHHHHhhc------------CcccchhcC-CCCCcchhhhhhhccccC
Q 041717 37 CWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAIDIITR------------NCWPAMLTS-LGFTAEEGNILRGYCDAS 102 (131)
Q Consensus 37 CWsSL~~v~gC~~EI~~sflnG~~~IGp~CCkAI~~I~~------------~CWP~MFps-~PFtp~e~~~LKg~Cs~~ 102 (131)
|=+.+..+-.|.. |++|.....+.||.+++.+.. +|.-..-.. .|+-+.-..-|=+-|.-.
T Consensus 3 C~~v~~~l~pCl~-----Yl~g~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~ 76 (91)
T d1mida_ 3 CGQVDSKMKPCLT-----YVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVN 76 (91)
T ss_dssp HHHHHHHHGGGHH-----HHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhHH-----HHcCCCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCCC
Confidence 4444555555643 356665699999999988863 233222212 234444456677778543
No 3
>d1hssa_ a.52.1.2 (A:) 0.19 alpha-amylase inhibitor {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=6.25 E-value=88 Score=21.06 Aligned_cols=35 Identities=17% Similarity=0.385 Sum_probs=23.4
Q ss_pred CcchHHHHHHHHHhCcc--c-cCccchhHHHHhhcCccc
Q 041717 44 MKSCSNEIFIFFLNSQA--D-IGPDCYRAIDIITRNCWP 79 (131)
Q Consensus 44 v~gC~~EI~~sflnG~~--~-IGp~CCkAI~~I~~~CWP 79 (131)
+++|-..+.+- -.|.. . +...||+-+..|.+.|+=
T Consensus 13 L~~CR~yv~~q-~~G~~~~~~~k~~CC~eLa~i~~~CRC 50 (120)
T d1hssa_ 13 LPACRPLLRLQ-CNGSQVPEAVLRDCCQQLAHISEWCRC 50 (120)
T ss_dssp CTTHHHHHHHH-TTTCCCCHHHHHHHHHHHHTSCTTTHH
T ss_pred cHHHHHHHHHH-hcCCCCcchHHHHHHHHHHhcCcccch
Confidence 55677654333 33332 1 667899999999999974
No 4
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.23 E-value=67 Score=16.92 Aligned_cols=9 Identities=22% Similarity=0.936 Sum_probs=6.7
Q ss_pred hhhhccccC
Q 041717 94 ILRGYCDAS 102 (131)
Q Consensus 94 ~LKg~Cs~~ 102 (131)
-+.|||++.
T Consensus 12 YvqGyCtrg 20 (29)
T d2cqea2 12 YITGFCARA 20 (29)
T ss_dssp TTTTCCSCS
T ss_pred heeeeecCC
Confidence 367899876
No 5
>d1kyqa2 e.37.1.1 (A:151-273) Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.46 E-value=1.1e+02 Score=20.18 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=14.1
Q ss_pred CCCCCcchhhhhhhccc
Q 041717 84 SLGFTAEEGNILRGYCD 100 (131)
Q Consensus 84 s~PFtp~e~~~LKg~Cs 100 (131)
..|-+|++.+++++||+
T Consensus 107 ~~~~~pp~~~~~~~~~~ 123 (123)
T d1kyqa2 107 CSLQFPPRERLLSEYCS 123 (123)
T ss_dssp SCCCCCCHHHHHHHSBC
T ss_pred cCCCCCChhHHHHHhhC
Confidence 35777899999999985
No 6
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=5.38 E-value=1.3e+02 Score=19.49 Aligned_cols=17 Identities=6% Similarity=0.094 Sum_probs=13.1
Q ss_pred hccCcchHHHHHHHHHh
Q 041717 41 LMEMKSCSNEIFIFFLN 57 (131)
Q Consensus 41 L~~v~gC~~EI~~sfln 57 (131)
..++.||.+||+.-.+.
T Consensus 14 ~vni~gC~~ai~~~~Lk 30 (95)
T d1k8rb_ 14 AVQSRGDYQKTLAIALK 30 (95)
T ss_dssp EEECCSCHHHHHHHHHH
T ss_pred EEEeccCHHHHHHHHHH
Confidence 57899999997666554
No 7
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=3.86 E-value=84 Score=17.60 Aligned_cols=9 Identities=56% Similarity=1.512 Sum_probs=5.4
Q ss_pred hhcCc--ccch
Q 041717 73 ITRNC--WPAM 81 (131)
Q Consensus 73 I~~~C--WP~M 81 (131)
-+.+| ||++
T Consensus 28 ytsncykwpni 38 (43)
T d1bdsa_ 28 YTSNCYKWPNI 38 (43)
T ss_dssp CCCEEEETTEE
T ss_pred cccccccCCcc
Confidence 34566 7765
No 8
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.67 E-value=1.4e+02 Score=16.12 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=11.4
Q ss_pred CCCCcchhhhhhhcc
Q 041717 85 LGFTAEEGNILRGYC 99 (131)
Q Consensus 85 ~PFtp~e~~~LKg~C 99 (131)
.||+++|-.+|...-
T Consensus 2 ~~WT~eED~~L~~~v 16 (47)
T d1gv2a2 2 TSWTEEEDRIIYQAH 16 (47)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 478888888887654
No 9
>d1d2zb_ a.77.1.2 (B:) Tube death domain {Drosophila melanogaster [TaxId: 7227]}
Probab=3.63 E-value=84 Score=22.06 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=19.5
Q ss_pred cccccccccccCCCCCCCCChhhhhhccCCchhhhhhhcc
Q 041717 4 IANATSRNDRLNNNMKPGYDLTIRLEASGGLTECWNTLME 43 (131)
Q Consensus 4 ~~~~~~~r~~~~~~~~~~~~l~~rl~~~~d~~kCWsSL~~ 43 (131)
+...++-|.++-. ....|+..|+ ..+||..||.
T Consensus 5 ~t~sTeiRkl~~~---~~~~La~iLD----~~~~WkkLm~ 37 (150)
T d1d2zb_ 5 YSRNTELRRVEDN---DIYRLAKILD----ENSCWRKLMS 37 (150)
T ss_dssp CCTTSBGGGSCHH---HHHHHHHHHH----GGGHHHHHHH
T ss_pred ccCcceeecCCHH---HHHHHHHHcC----ccchHHHHHH
Confidence 3445666666644 2444555554 5669998874
No 10
>d2bbga_ g.6.1.1 (A:) Amb V allergen {Giant ragweed (Ambrosia trifida), pollen [TaxId: 4214]}
Probab=3.63 E-value=73 Score=17.63 Aligned_cols=9 Identities=33% Similarity=0.792 Sum_probs=6.7
Q ss_pred cCccchhHH
Q 041717 62 IGPDCYRAI 70 (131)
Q Consensus 62 IGp~CCkAI 70 (131)
+|+.||.-|
T Consensus 14 vgkyccspi 22 (40)
T d2bbga_ 14 VGKYCCSPI 22 (40)
T ss_dssp TTSEEECSS
T ss_pred ccceecccc
Confidence 888888654
Done!