BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041719
(292 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J7N|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
pdb|2J7N|B Chain B, Structure Of The Rnai Polymerase From Neurospora Crassa
pdb|2J7O|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
Length = 1022
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 74 ALMLDTYDYKNDIWLCHASKGKCEDYTSFGPAREVF-KEIEAFLSANKS 121
AL L YK+D WL DY F AR KE+EAF +A K+
Sbjct: 760 ALSLPDPMYKSDSWLGRGEPTHIIDYLKFSIARPAIDKELEAFHNAMKA 808
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 15/91 (16%)
Query: 185 SKQESEGIAYQWNYVVENHYGDEGMHSGKCSNRAESVPLN-------DKTKSLVLVNHFP 237
S + +GIA + +E + G + ++ C+N +S +N D+T++++ +HFP
Sbjct: 140 SAAKGQGIA-ELADAIEYYRGGKDVYVVGCTNVGKSTFINRXIKEFSDETENVITTSHFP 198
Query: 238 S-------IPLKLRSSRDNSKGLIDMVQTCY 261
IPL SS ++ G+I+ Q +
Sbjct: 199 GTTLDLIDIPLDEESSLYDTPGIINHHQXAH 229
>pdb|2PLA|A Chain A, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
pdb|2PLA|B Chain B, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
Length = 349
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 250 SKGLIDMVQTCYGAAGNRWANFVAVDFYRKGEAFQAIDK 288
S G+ D++ TCYG R VA F R G+ + ++K
Sbjct: 257 SCGVADLITTCYGGRNRR----VAEAFARTGKTIEELEK 291
>pdb|3L9C|A Chain A, The Crystal Structure Of Smu.777 From Streptococcus Mutans
Ua159
pdb|3L9C|B Chain B, The Crystal Structure Of Smu.777 From Streptococcus Mutans
Ua159
Length = 259
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 106 REVFKEIEAFLSANKSEIVTLFLEDYVETPKGLTKVFNE-TGLMKYWFPVSKMPQNGQD 163
R+V +E+ F + + L ++ ETP+ L +VF+E T L ++ MP+N QD
Sbjct: 135 RDVLEEMYDFSN------LILSYHNFEETPENLMEVFSELTALAPRVVKIAVMPKNEQD 187
>pdb|3TQX|A Chain A, Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A Ligase
(Kbl) From Coxiella Burnetii
pdb|3TQX|B Chain B, Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A Ligase
(Kbl) From Coxiella Burnetii
Length = 399
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 49 HSGLFSLVITNQDDKITQQLNH-----GVRALMLDTYDYKND 85
+ GLF ++ +D I+ +LNH G+R Y YKN+
Sbjct: 116 NGGLFETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKNN 157
>pdb|1WPQ|A Chain A, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1
With Nad And Dihydroxyactone
pdb|1WPQ|B Chain B, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1
With Nad And Dihydroxyactone
Length = 349
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 250 SKGLIDMVQTCYGAAGNRWANFVAVDFYRKGEAFQAIDK 288
S G+ D++ TCYG + VA F R G++ + ++K
Sbjct: 255 SCGVADLITTCYGGRNRK----VAEAFARTGKSIEQLEK 289
>pdb|1X0X|A Chain A, Co-Structure Of Homo Sapiens Glycerol-3-Phosphate
Dehydrogenase 1 Complex With Nad
Length = 354
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 250 SKGLIDMVQTCYGAAGNRWANFVAVDFYRKGEAFQAIDK 288
S G+ D++ TCYG + VA F R G++ + ++K
Sbjct: 260 SCGVADLITTCYGGRNRK----VAEAFARTGKSIEQLEK 294
>pdb|1X0V|A Chain A, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate
Dehydrogenase 1
pdb|1X0V|B Chain B, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate
Dehydrogenase 1
Length = 354
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 250 SKGLIDMVQTCYGAAGNRWANFVAVDFYRKGEAFQAIDK 288
S G+ D++ TCYG + VA F R G++ + ++K
Sbjct: 260 SCGVADLITTCYGGRNRK----VAEAFARTGKSIEQLEK 294
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,608,061
Number of Sequences: 62578
Number of extensions: 352420
Number of successful extensions: 1057
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1056
Number of HSP's gapped (non-prelim): 9
length of query: 292
length of database: 14,973,337
effective HSP length: 98
effective length of query: 194
effective length of database: 8,840,693
effective search space: 1715094442
effective search space used: 1715094442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)