Query 041719
Match_columns 292
No_of_seqs 198 out of 781
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 17:00:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2plc_A PI-PLC, phosphatidylino 100.0 1.2E-37 4.2E-42 283.8 9.2 245 25-292 11-274 (274)
2 3ea1_A 1-phosphatidylinositol 100.0 1.7E-32 6E-37 250.9 12.2 155 15-186 5-167 (298)
3 3v1h_A 1-phosphatidylinositol 100.0 2.6E-32 9E-37 251.1 10.8 144 25-185 14-167 (306)
4 3h4x_A Phosphatidylinositol-sp 99.8 1.3E-19 4.6E-24 165.1 11.2 149 18-184 16-196 (339)
5 2zkm_X 1-phosphatidylinositol- 98.3 3.3E-06 1.1E-10 86.8 12.9 159 2-180 290-461 (799)
6 1djx_A PLC-D1, phosphoinositid 98.3 2.3E-06 7.8E-11 85.7 10.7 139 25-180 165-306 (624)
7 3qr0_A Phospholipase C-beta (P 98.2 5.1E-06 1.8E-10 85.3 11.4 159 2-180 301-469 (816)
8 3ohm_B 1-phosphatidylinositol- 98.1 1.5E-05 5.1E-10 82.5 11.6 159 2-180 294-465 (885)
9 3rlg_A Sphingomyelin phosphodi 76.6 4.5 0.00015 36.5 6.2 66 61-129 39-116 (302)
10 1xx1_A Smase I, sphingomyelina 71.5 8.5 0.00029 33.6 6.7 68 62-130 18-94 (285)
11 3ks6_A Glycerophosphoryl diest 70.8 23 0.00079 30.3 9.3 34 59-92 18-52 (250)
12 2o55_A Putative glycerophospho 46.3 16 0.00054 31.4 3.8 32 61-92 26-58 (258)
13 1o1z_A GDPD, glycerophosphodie 45.6 22 0.00075 30.2 4.5 35 58-92 27-62 (234)
14 1vd6_A Glycerophosphoryl diest 45.2 23 0.00079 29.7 4.6 34 59-92 23-57 (224)
15 3no3_A Glycerophosphodiester p 45.0 17 0.00058 31.0 3.7 68 61-130 24-106 (238)
16 2otd_A Glycerophosphodiester p 43.8 25 0.00086 29.9 4.6 34 59-92 22-56 (247)
17 1zcc_A Glycerophosphodiester p 43.2 26 0.00088 29.9 4.6 35 58-92 16-51 (248)
18 3qvq_A Phosphodiesterase OLEI0 42.5 26 0.00089 30.0 4.6 34 59-92 25-59 (252)
19 2pz0_A Glycerophosphoryl diest 41.6 26 0.00088 30.0 4.4 35 58-92 26-61 (252)
20 3zxw_B Ribulose bisphosphate c 40.3 35 0.0012 26.3 4.4 25 103-127 64-88 (118)
21 1rbl_M Ribulose 1,5 bisphospha 40.1 37 0.0013 25.8 4.4 25 103-127 65-89 (109)
22 3ch0_A Glycerophosphodiester p 40.1 28 0.00095 30.0 4.4 35 58-92 23-58 (272)
23 1svd_M Ribulose bisphosphate c 40.0 36 0.0012 25.9 4.4 25 103-127 67-91 (110)
24 3l12_A Putative glycerophospho 36.3 27 0.00091 31.0 3.7 32 61-92 35-67 (313)
25 1bwv_S Rubisco, protein (ribul 36.0 45 0.0015 26.4 4.5 25 103-127 59-83 (138)
26 1bxn_I Rubisco, protein (ribul 35.2 45 0.0015 26.4 4.4 25 103-127 59-83 (139)
27 2dt7_A Splicing factor 3A subu 34.7 22 0.00076 21.7 2.0 20 104-123 14-33 (38)
28 3mz2_A Glycerophosphoryl diest 33.9 27 0.00092 30.9 3.3 32 61-92 50-82 (292)
29 1ydy_A Glycerophosphoryl diest 32.4 33 0.0011 31.0 3.7 32 61-92 48-80 (356)
30 4f0h_B Ribulose bisphosphate c 31.3 59 0.002 25.7 4.5 25 103-127 59-83 (138)
31 3i10_A Putative glycerophospho 30.6 52 0.0018 28.9 4.6 35 58-92 32-67 (278)
32 2k7r_A Primosomal protein DNAI 29.8 19 0.00064 26.9 1.3 14 110-123 32-45 (106)
33 1t6t_1 Putative protein; struc 29.6 95 0.0032 23.7 5.3 66 103-184 6-72 (118)
34 2oog_A Glycerophosphoryl diest 29.3 53 0.0018 28.5 4.4 32 61-92 41-74 (287)
35 3m91_B Prokaryotic ubiquitin-l 28.2 36 0.0012 21.4 2.2 26 104-129 15-40 (44)
36 1gk8_I Ribulose bisphosphate c 26.8 78 0.0027 25.1 4.4 25 103-127 84-108 (140)
37 1wdd_S Ribulose bisphosphate c 26.2 82 0.0028 24.5 4.4 25 103-127 77-101 (128)
38 2buf_A Acetylglutamate kinase; 21.9 2.1E+02 0.0072 24.9 7.0 58 104-183 9-67 (300)
39 3q71_A Poly [ADP-ribose] polym 20.0 52 0.0018 28.0 2.4 24 106-129 171-198 (221)
No 1
>2plc_A PI-PLC, phosphatidylinositol-specific phospholipase C; hydrolase, phospholipid degradation, virulence factor of human pathogen; 2.00A {Listeria monocytogenes} SCOP: c.1.18.2 PDB: 1aod_A*
Probab=100.00 E-value=1.2e-37 Score=283.82 Aligned_cols=245 Identities=16% Similarity=0.230 Sum_probs=156.5
Q ss_pred CCCccCCceeeeccCccCCCCCCCCCCcccccccCCchhHHHHHHccCcEEEEEEEeeCCcEEEEecCCCCcccCCCccC
Q 041719 25 NDSLPFNKYAFLTTHNSFAISEGRHSGLFSLVITNQDDKITQQLNHGVRALMLDTYDYKNDIWLCHASKGKCEDYTSFGP 104 (292)
Q Consensus 25 ~~~~pl~~l~ipGTHnS~~~~~~~~~g~~~~~~~nQ~~si~~QL~~GvR~ldlrv~~~~~~~~l~H~~~~~C~~~~~~~~ 104 (292)
.+++||++++|||||||+++......+....++.||+.+|++||++||||||||++ +++++||+. |.. ..+
T Consensus 11 ~~~~~l~~l~ipGtHdS~~~~~~~~~~~~~~~~~~Q~~~i~~QL~~GvR~ldlr~~---~~~~~~H~~---~~~---~~~ 81 (274)
T 2plc_A 11 PDTTNLAALSIPGTHDTMSYNGDITWTLTKPLAQTQTMSLYQQLEAGIRYIDIRAK---DNLNIYHGP---IFL---NAS 81 (274)
T ss_dssp CTTCBGGGSEEEEETTTTTTSCSHHHHHTHHHHCCCSSCHHHHHHTTCCEEEEEEC---TTSEEEETT---EEE---EEE
T ss_pred CCCCeeeeeeeeeecchhhccCCCccccccccccCCCcCHHHHHHhCCcEEEEEEC---CcEEEEEcC---CCC---CCC
Confidence 56899999999999999998732100111247999999999999999999999999 789999997 632 268
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEeeccccCCcchh----hHHHhhcCcCceeecCCCCCCCCCCCCcHHHHHhCCcEEEEE
Q 041719 105 AREVFKEIEAFLSANKSEIVTLFLEDYVETPKGL----TKVFNETGLMKYWFPVSKMPQNGQDWPLVRDMVASNQRLVVF 180 (292)
Q Consensus 105 l~d~L~ei~~fL~~nP~EvVil~l~~~~~~~~~~----~~~~~~~~l~~~~~~p~~~~~~~~~wPTL~el~~~gkrvivf 180 (292)
++++|.+|++||++||+|||+|.+++.......+ ..++ .++++++|+|+.. .....||||+|| +||||||+
T Consensus 82 ~~~~L~~i~~fL~~~P~EvVil~~~~~~~~~~~~~~~~~~l~--~~l~~~~~~~~~~-~~~~~~pTL~e~--rGK~vlv~ 156 (274)
T 2plc_A 82 LSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYRIQPLI--NIYKDYFYTTPRT-DTSNKIPTLKDV--RGKILLLS 156 (274)
T ss_dssp HHHHHHHHHHHHHHSTTCCEEEEEEETTCSCSHHHHHHHHHH--HHTGGGBCEEESS-CCCCCCCBTTTT--TTCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEEeCCCCCCcHHHHHHHHH--HHhhceeecCccc-ccCCCCCCHHHh--CCCEEEEE
Confidence 9999999999999999999999999632222222 2223 5788999987532 234689999999 59999988
Q ss_pred EcCCCCc---CcCCcccccc---cccccCCCCCCCC-cc---ccc-CCCCCCCCCCcCCceEEeeeCCCC---c-ccccc
Q 041719 181 TSKKSKQ---ESEGIAYQWN---YVVENHYGDEGMH-SG---KCS-NRAESVPLNDKTKSLVLVNHFPSI---P-LKLRS 245 (292)
Q Consensus 181 ~~~~~~~---~~~~~~~~~~---~~~e~~~~~~~~~-~~---~C~-~r~~~~~l~~~~~~lfl~nhf~~~---P-~~~~a 245 (292)
.+..... +...+.+.|. ...++.|...+.. .+ .+. .+... ....+++||.... + -...|
T Consensus 157 ~~~~~~~~~~~~~~~~~~w~~~~~~iqD~y~~~~~~~K~~~i~~~l~~a~~------~~~~~~iN~~S~~~~~~~p~~~A 230 (274)
T 2plc_A 157 ENHTKKPLVINSRKFGMQFGAPNQVIQDDYNGPSVKTKFKEIVQTAYQASK------ADNKLFLNHISATSLTFTPRQYA 230 (274)
T ss_dssp ESTTCSCEEETTEEESEETTCTTEEEECCCBSCCHHHHHHHHHHHHHHHHH------CSSSEEEEECCCBCSSSCHHHHH
T ss_pred eCCCCCCCCcCcccccccCCCCCccccccCCCCcHHHHHHHHHHHHHHhhc------CCCCeEEEEEcccCCCCCHHHHH
Confidence 7643210 0111122231 1244444332210 00 111 01000 1124558886531 1 11122
Q ss_pred cCCCchhHHHHHHHhccCCCCCcceEEEEeccCCCChHHHHHHhcCC
Q 041719 246 SRDNSKGLIDMVQTCYGAAGNRWANFVAVDFYRKGEAFQAIDKINNG 292 (292)
Q Consensus 246 ~~~n~~~l~~~~~~C~~~~~~r~pNfv~vDF~~~g~~~~~v~~lN~~ 292 (292)
...|. .+......|.... .+.+|||++||++ ++++++|+++|..
T Consensus 231 ~~~n~-~l~~~l~~~~~~~-~~~~gIV~~DFv~-~~~i~~vI~~N~~ 274 (274)
T 2plc_A 231 AALNN-KVEQFVLNLTSEK-VRGLGILIMDFPE-KQTIKNIIKNNKF 274 (274)
T ss_dssp HHHHH-HHHHHHHHHHHTT-CCCCEEEEESSCC-HHHHHHHHTTSCC
T ss_pred HHHhH-HHHHHHHHHhcCC-CCcccEEEEeCCC-chhHHHHHhccCC
Confidence 22221 1222333343333 3459999999998 7899999999974
No 2
>3ea1_A 1-phosphatidylinositol phosphodiesterase; phosphatidylinositol-specific phospholipase C, PI-PLC, dimer, interfacially impaired; 1.75A {Bacillus thuringiensis} SCOP: c.1.18.2 PDB: 3ea2_A* 3ea3_A 1t6m_A 2or2_A 1gym_A* 1ptd_A 1ptg_A* 7ptd_A 2ptd_A 4ptd_A 3ptd_A 6ptd_A 5ptd_A
Probab=99.98 E-value=1.7e-32 Score=250.90 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=116.4
Q ss_pred ccccccccCC---CCCccCCceeeeccCccCCCCCCCCCCcccccccCCchhHHHHHHccCcEEEEEEEee-CCcEEEEe
Q 041719 15 VCFSVVATAK---NDSLPFNKYAFLTTHNSFAISEGRHSGLFSLVITNQDDKITQQLNHGVRALMLDTYDY-KNDIWLCH 90 (292)
Q Consensus 15 ~~~~~~~~~~---~~~~pl~~l~ipGTHnS~~~~~~~~~g~~~~~~~nQ~~si~~QL~~GvR~ldlrv~~~-~~~~~l~H 90 (292)
-|....+.|| .+++||++++|||||||+++....+. ...|+.||+.+|++||++||||||||++.. ++.+++||
T Consensus 5 ~~~~~~~~WM~~l~d~~pl~~lsiPGTHdS~a~~~~~~~--~~~~~~tQ~~si~~QL~~GIR~lDlRv~~~~~~~l~~~H 82 (298)
T 3ea1_A 5 NELENWSKWMQPIPDNIPLARISIPGTHDSGTFKLQNPI--KQVWGMTQEYDFRYQMDHGARIFDIRGRLTDDNTIVLHH 82 (298)
T ss_dssp GGGGCTTSTTTTSCTTSBTTTSCEEEETTTTCTTCCSHH--HHHHHCCCSSCHHHHHHTTCCEEEEEEEECTTSCEEEEE
T ss_pred hhhhcHHHHHHhCccCCeeeeeeeccccccccccCCCch--hhhcccCccccHHHHHhcCCeEEEEEeEecCCCcEEEEC
Confidence 3566677777 57999999999999999998732111 124789999999999999999999999876 46899999
Q ss_pred cCCCCcccCCCccCHHHHHHHHHHHHhcCCCCeEEEeecc-ccC---CcchhhHHHhhcCcCceeecCCCCCCCCCCCCc
Q 041719 91 ASKGKCEDYTSFGPAREVFKEIEAFLSANKSEIVTLFLED-YVE---TPKGLTKVFNETGLMKYWFPVSKMPQNGQDWPL 166 (292)
Q Consensus 91 ~~~~~C~~~~~~~~l~d~L~ei~~fL~~nP~EvVil~l~~-~~~---~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~wPT 166 (292)
+. |.. ..++.++|.+|++||++||+|||+|++++ +.. ....+.+.+.+..+.+ |... ....|||
T Consensus 83 g~---~~~---~~~l~dvL~ei~~FL~~hP~EvVil~ik~e~~~~~~~~~~f~~~~~~~~~~~----~~~~--~~~~~pt 150 (298)
T 3ea1_A 83 GP---LYL---YVTLHEFINEAKQFLKDNPSETIIMSLKKEYEDMKGAEGSFSSTFEKNYFVD----PIFL--KTEGNIK 150 (298)
T ss_dssp TT---EEE---EEEHHHHHHHHHHHHHHCTTCCEEEEEEECSCCCTTCSSCHHHHHHHHTTTS----TTBC--CCCSSCB
T ss_pred Cc---ccc---cCCHHHHHHHHHHHHHHCCCeEEEEEEEecCCCcCcchHHHHHHHHHHHhcC----cccc--cCCCCCc
Confidence 97 764 26899999999999999999999999996 431 1224555554322222 2111 2357899
Q ss_pred HHHHHhCCcEEEEEEcCCCC
Q 041719 167 VRDMVASNQRLVVFTSKKSK 186 (292)
Q Consensus 167 L~el~~~gkrvivf~~~~~~ 186 (292)
|+|+| || ||++.+.+.+
T Consensus 151 Lge~R--GK-ivll~rf~~~ 167 (298)
T 3ea1_A 151 LGDAR--GK-IVLLKRYSGS 167 (298)
T ss_dssp HHHHT--TS-EEEEEESSCC
T ss_pred HHHhc--CC-EEEEEecCCc
Confidence 99997 77 6667776543
No 3
>3v1h_A 1-phosphatidylinositol phosphodiesterase; PI-cation, TIM barrel, phospholipase, lyase; HET: INS; 1.90A {Staphylococcus aureus subsp} PDB: 4f2b_A* 4f2u_A* 4f2t_A 3v18_A 3v16_A*
Probab=99.97 E-value=2.6e-32 Score=251.08 Aligned_cols=144 Identities=16% Similarity=0.228 Sum_probs=111.5
Q ss_pred CCCccCCceeeeccCccCCCCCCCCCCcccccccCCchhHHHHHHccCcEEEEEEEee-CCcEEEEecCCCCcccCCCcc
Q 041719 25 NDSLPFNKYAFLTTHNSFAISEGRHSGLFSLVITNQDDKITQQLNHGVRALMLDTYDY-KNDIWLCHASKGKCEDYTSFG 103 (292)
Q Consensus 25 ~~~~pl~~l~ipGTHnS~~~~~~~~~g~~~~~~~nQ~~si~~QL~~GvR~ldlrv~~~-~~~~~l~H~~~~~C~~~~~~~ 103 (292)
.+++||++++|||||||+++....+. ...|+.||+.+|++||++||||||||++.. ++.+++||+. |.. ..
T Consensus 14 ~d~~~l~~lsiPGTHdS~~~~~~~p~--~~~~~~tQ~~si~~QL~~GVR~lDlRv~~~~~~~l~~~Hg~---~~~---~~ 85 (306)
T 3v1h_A 14 DDGKHLTEINIPGSHDSGSFTLKDPV--KSVWAKTQDKDYLTQMKSGVRFFDIRGRASADNMISVHHGM---VYL---HH 85 (306)
T ss_dssp CTTSBGGGSCEEEETTGGGGGCCCHH--HHHHHCCCSSCHHHHHHTTCCEEEEEEEEEETTEEEEEETT---EEE---EE
T ss_pred CCCCEeecceeccccchhhccCCCcc--cchhhccCCCCHHHHHHhCcceEEEEeeecCCCcEEEEccC---ccc---CC
Confidence 57899999999999999998722211 124799999999999999999999999865 6789999997 753 37
Q ss_pred CHHHHHHHHHHHHhcCCCCeEEEeeccccCC----cchhhHHHhhc-----CcCceeecCCCCCCCCCCCCcHHHHHhCC
Q 041719 104 PAREVFKEIEAFLSANKSEIVTLFLEDYVET----PKGLTKVFNET-----GLMKYWFPVSKMPQNGQDWPLVRDMVASN 174 (292)
Q Consensus 104 ~l~d~L~ei~~fL~~nP~EvVil~l~~~~~~----~~~~~~~~~~~-----~l~~~~~~p~~~~~~~~~wPTL~el~~~g 174 (292)
++.++|++|++||++||+|||||+|+++... ...+.+++++. +..+++|.. ...+|||+|+| |
T Consensus 86 ~l~dvL~~i~~FL~~hP~EvVil~l~~e~~~~~~~~~~f~~~~~~~~~~~~~~~~~~y~~------~~~~PtLge~R--G 157 (306)
T 3v1h_A 86 ELGKFLDDAKYYLSAYPNETIVMSMKKDYDSDSKVTKTFEEIFREYYYNNPQYQNLFYTG------SNANPTLKETK--G 157 (306)
T ss_dssp EHHHHHHHHHHHHHHSTTCCEEEEEEECSCCCTTCCSCHHHHHHHHTTTCGGGTTTBCCC------SCSSCBHHHHT--T
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCccchHHHHHHHHHHhhcCcccccceecC------CCCCCchHHhc--C
Confidence 8999999999999999999999999964321 24566766532 223445422 23689999998 7
Q ss_pred cEEEEEEcCCC
Q 041719 175 QRLVVFTSKKS 185 (292)
Q Consensus 175 krvivf~~~~~ 185 (292)
| ||++.+.+.
T Consensus 158 K-Ivll~rf~~ 167 (306)
T 3v1h_A 158 K-IVLFNRMGG 167 (306)
T ss_dssp S-EEEEEESSS
T ss_pred c-EEEEEecCC
Confidence 7 666666654
No 4
>3h4x_A Phosphatidylinositol-specific phospholipase C1; PI-PLC, Ca2+-dependent, catalytic TIM barrel, disulfide-LINK loop, hydrolase; 1.23A {Streptomyces antibioticus} PDB: 3h4w_A
Probab=99.80 E-value=1.3e-19 Score=165.08 Aligned_cols=149 Identities=13% Similarity=0.207 Sum_probs=101.4
Q ss_pred cccccCCCCCccCCceeeeccCccCCCCCCCCCCcccccccCCchhHHHHHHccCcEEEEEEEee--CCcEEEEecCC--
Q 041719 18 SVVATAKNDSLPFNKYAFLTTHNSFAISEGRHSGLFSLVITNQDDKITQQLNHGVRALMLDTYDY--KNDIWLCHASK-- 93 (292)
Q Consensus 18 ~~~~~~~~~~~pl~~l~ipGTHnS~~~~~~~~~g~~~~~~~nQ~~si~~QL~~GvR~ldlrv~~~--~~~~~l~H~~~-- 93 (292)
|+.-.....++||++++++|+||||..+. ..+|.+||+.|||+||||||.. .+++.+||+..
T Consensus 16 ~~~~~~~~~~~pls~~T~~g~HNSY~~g~--------------~~~i~~qLd~GVR~LELDIw~n~~~g~~~V~Hg~~l~ 81 (339)
T 3h4x_A 16 PRGSHMEPAATTYGTSTSVGVHNAYEKEK--------------YRYFADALDSGAALLELDLWSNALGRSWRVSHSNPLG 81 (339)
T ss_dssp ---------CCBTTSEEEEEETTTTCTTT--------------CSSHHHHHTTCCSEEEEEEESSSSSSSCEECSSSCSS
T ss_pred cCCCCCCcccCccccceEeeccccccccC--------------cccHHHHHHhCCCEEEEEeecCCCCCCeEEeCCCccc
Confidence 44444456799999999999999998652 3579999999999999999976 67899999752
Q ss_pred --CCcccC-------C--CccCHHHHHHHHHHHHhcCCCCe-EEEeeccccC-------CcchhhHHHhhcCcCceeecC
Q 041719 94 --GKCEDY-------T--SFGPAREVFKEIEAFLSANKSEI-VTLFLEDYVE-------TPKGLTKVFNETGLMKYWFPV 154 (292)
Q Consensus 94 --~~C~~~-------~--~~~~l~d~L~ei~~fL~~nP~Ev-Vil~l~~~~~-------~~~~~~~~~~~~~l~~~~~~p 154 (292)
++|... + ...+|.++|++||+|+++||+|+ |+|.++.... .++.+.+.+.+ -|++.+|.|
T Consensus 82 ~~nnC~~as~~~dL~t~Tt~~tL~~CL~~IK~WsdahPsh~PViI~LE~K~t~~~~~g~~p~~lDaeI~~-vFGd~L~tP 160 (339)
T 3h4x_A 82 NNSNCEGAANASELRTKSRDQDFAGCLSDMRAWHDAHPGHRPILLKIEMKDGFNAKGGRGPAEFDALIRQ-KLGDAVYGP 160 (339)
T ss_dssp CCSSCCCCSSGGGTTCSCCCCCHHHHHHHHHHHHHHSTTCCCEEEEEEETTCCBGGGTBSHHHHHHHHHH-HHGGGBCCH
T ss_pred ccccccccccccccccCCCCcCHHHHHHHHHHHHHhCCCCCceEEEEecccCcccccCcCHHHHHHHHHH-HhccceEcc
Confidence 247631 1 13689999999999999999996 6667773211 12345555553 344777777
Q ss_pred CCCC---------CCCCCCCcHHHHHhCCcEEEEEEcCC
Q 041719 155 SKMP---------QNGQDWPLVRDMVASNQRLVVFTSKK 184 (292)
Q Consensus 155 ~~~~---------~~~~~wPTL~el~~~gkrvivf~~~~ 184 (292)
+... .....||||++++ || ||+..+.+
T Consensus 161 ddvrG~~~TL~eAVla~GWPSl~slR--GK-Vlf~Ld~G 196 (339)
T 3h4x_A 161 GDLTGGHATADEAVRAGGWPSRADLA--GK-FLFELIPG 196 (339)
T ss_dssp HHHHTTSSSHHHHHHHHCCCBTGGGT--TC-EEEEEEEC
T ss_pred hhhcccccCHHHHHhcCCCCChHHhC--CC-EEEEEeCC
Confidence 5321 0123699999987 76 44444544
No 5
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=98.34 E-value=3.3e-06 Score=86.78 Aligned_cols=159 Identities=17% Similarity=0.235 Sum_probs=102.6
Q ss_pred hHHhhhhhheeecccccccccC----CCCCccCCceeeeccCccCCCCCCCCCCcccccccCCchhHHHHHHccCcEEEE
Q 041719 2 AFLRYLQSIIITSVCFSVVATA----KNDSLPFNKYAFLTTHNSFAISEGRHSGLFSLVITNQDDKITQQLNHGVRALML 77 (292)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~pl~~l~ipGTHnS~~~~~~~~~g~~~~~~~nQ~~si~~QL~~GvR~ldl 77 (292)
.|.+||.+- -+.+..|.. ...+.||+++-|-.|||+|-.+.. ..| ..=.....+-|..|+|-+||
T Consensus 290 eF~~~L~S~----~n~~~~~~~~~v~~dm~~PLshYfI~SSHNTYL~g~Q-l~g------~ss~e~y~~aL~~GcRcvEl 358 (799)
T 2zkm_X 290 GMVWFLCGP----ENSVLAQDKLLLHHDMTQPLNHYFINSSHNTYLTAGQ-FSG------LSSAEMYRQVLLSGCRCVEL 358 (799)
T ss_dssp HHHHHHHST----TSCSBCGGGGSSCSCCCSCGGGEEECBBSSTTBSSCS-SSS------CBCTHHHHHHHHTTCCEEEE
T ss_pred hhhhcccCc----cccccchhhcccccccCCchhhheEeccccceeecCc-ccC------cccHHHHHHHHHhCCCEEEE
Confidence 477777642 222333332 245899999999999999987621 111 12245688899999999999
Q ss_pred EEEee---CCcEEEEecCCCCcccCCCccCHHHHHHHHHHHHhcCCCCeEEEeeccccCCc---chhhHHHhhcCcCcee
Q 041719 78 DTYDY---KNDIWLCHASKGKCEDYTSFGPAREVFKEIEAFLSANKSEIVTLFLEDYVETP---KGLTKVFNETGLMKYW 151 (292)
Q Consensus 78 rv~~~---~~~~~l~H~~~~~C~~~~~~~~l~d~L~ei~~fL~~nP~EvVil~l~~~~~~~---~~~~~~~~~~~l~~~~ 151 (292)
|++.. +++..++||. . ++...+|.++++.|++.-=..-.=-|||.|++.-.++ ....+.+. .-|++.+
T Consensus 359 D~Wdg~~~~~ep~v~HG~----T-lts~i~f~~v~~~I~~~AF~~S~yPvIlslE~Hc~s~~qQ~~ma~~~~-~~~Gd~L 432 (799)
T 2zkm_X 359 DCWKGKPPDEEPIITHGF----T-MTTDIFFKEAIEAIAESAFKTSPYPIILSFENHVDSPRQQAKMAEYCR-TIFGDML 432 (799)
T ss_dssp EEECCCTTCCSCEECCTT----S-SCCCEEHHHHHHHHHHHTTSSCCSCEEEEEEECCCCHHHHHHHHHHHH-HHHGGGB
T ss_pred EeecCCCCCCCCEEEeCC----c-ccccccHHHHHHHHHHhcccCCCCCEEEEccccCCCHHHHHHHHHHHH-HHhhhhe
Confidence 99875 4678899995 2 3334789999999998653221224799999653122 22334454 4467877
Q ss_pred ecCCC--CC-CCCCCCCcHHHHHhCCcEEEEE
Q 041719 152 FPVSK--MP-QNGQDWPLVRDMVASNQRLVVF 180 (292)
Q Consensus 152 ~~p~~--~~-~~~~~wPTL~el~~~gkrvivf 180 (292)
+.+.. .+ ......|+.++|. || |||-
T Consensus 433 ~~~~~~~~~~~~~~~lPSP~~Lk--~k-Ilik 461 (799)
T 2zkm_X 433 LTEPLEKFPLKPGVPLPSPEDLR--GK-ILIK 461 (799)
T ss_dssp CCSCCTTSCSSTTCCCCCTTTTT--TC-EEEE
T ss_pred ecCCccccccccCCCCCCHHHHC--CC-EEEE
Confidence 75321 11 1235789999996 54 5554
No 6
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=98.31 E-value=2.3e-06 Score=85.74 Aligned_cols=139 Identities=17% Similarity=0.243 Sum_probs=93.5
Q ss_pred CCCccCCceeeeccCccCCCCCCCCCCcccccccCCchhHHHHHHccCcEEEEEEEee-CCcEEEEecCCCCcccCCCcc
Q 041719 25 NDSLPFNKYAFLTTHNSFAISEGRHSGLFSLVITNQDDKITQQLNHGVRALMLDTYDY-KNDIWLCHASKGKCEDYTSFG 103 (292)
Q Consensus 25 ~~~~pl~~l~ipGTHnS~~~~~~~~~g~~~~~~~nQ~~si~~QL~~GvR~ldlrv~~~-~~~~~l~H~~~~~C~~~~~~~ 103 (292)
..+.||+++-|-.|||+|-.++. ..| ..=.....+-|..|+|-+||||+.. +++..++||. . ++...
T Consensus 165 dm~~pLs~Yfi~SsHNTYL~G~Q-l~~------~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~----t-lts~i 232 (624)
T 1djx_A 165 DMDQPLSHYLVSSSHNTYLLEDQ-LTG------PSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGY----T-FTSKI 232 (624)
T ss_dssp CTTSCGGGEEECEESSTTBSSCS-SSC------CBCHHHHHHHHHTTCCEEEEEEECCGGGCCEECCTT----S-CCCCE
T ss_pred cccCcchhheeecccchhhhcCc-ccC------CcCHHHHHHHHHhCCcEEEEEeecCCCCCeEEecCC----c-ccccc
Confidence 45889999999999999987621 112 1224567889999999999999874 5678899995 2 33347
Q ss_pred CHHHHHHHHHHHHhcCCCCeEEEeeccccCC--cchhhHHHhhcCcCceeecCCCCCCCCCCCCcHHHHHhCCcEEEEE
Q 041719 104 PAREVFKEIEAFLSANKSEIVTLFLEDYVET--PKGLTKVFNETGLMKYWFPVSKMPQNGQDWPLVRDMVASNQRLVVF 180 (292)
Q Consensus 104 ~l~d~L~ei~~fL~~nP~EvVil~l~~~~~~--~~~~~~~~~~~~l~~~~~~p~~~~~~~~~wPTL~el~~~gkrvivf 180 (292)
+|.++++.|+++-=..-.=-|||.|++.-.. .....+.+. .-|++.++.+..- ......|+.++|+ || |||-
T Consensus 233 ~f~~v~~~I~~~AF~~s~yPvilslE~Hc~~~qQ~~ma~~~~-~~~gd~L~~~~~~-~~~~~lpsp~~Lk--~k-ilik 306 (624)
T 1djx_A 233 LFCDVLRAIRDYAFKASPYPVILSLENHCSLEQQRVMARHLR-AILGPILLDQPLD-GVTTSLPSPEQLK--GK-ILLK 306 (624)
T ss_dssp EHHHHHHHHHHHTTTSCSSCEEEEEEEECCHHHHHHHHHHHH-HHHGGGBCCSCCT-TCCSSCCCTTTTT--TC-EEEE
T ss_pred cHHHHHHHHHHhcccCCCCCEEEEecccCCHHHHHHHHHHHH-HHHhhhhcCCCcc-CCcCCCCCHHHHC--CC-EEEE
Confidence 8999999999874322122479999954311 122344444 4467877754321 1135789999996 54 5554
No 7
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=98.23 E-value=5.1e-06 Score=85.33 Aligned_cols=159 Identities=18% Similarity=0.188 Sum_probs=102.3
Q ss_pred hHHhhhhhheeeccccccccc----CCCCCccCCceeeeccCccCCCCCCCCCCcccccccCCchhHHHHHHccCcEEEE
Q 041719 2 AFLRYLQSIIITSVCFSVVAT----AKNDSLPFNKYAFLTTHNSFAISEGRHSGLFSLVITNQDDKITQQLNHGVRALML 77 (292)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~pl~~l~ipGTHnS~~~~~~~~~g~~~~~~~nQ~~si~~QL~~GvR~ldl 77 (292)
+|.+||.+- -+.+..|. ....+.||+++-|-.|||+|-.+.. ..| ..=......-|..|+|-++|
T Consensus 301 gF~~yL~S~----~~~~~~~~~~~v~~dm~~Pl~~YfI~sshntyL~g~q-l~g------~ss~~~y~~aL~~gcRcvEl 369 (816)
T 3qr0_A 301 GLLYFLMCE----ENNLTPMHRLDLGANMKLTLAAYYINSSHNTYLTGHQ-LTG------KSSVEIYRQVLLTGCRCLEL 369 (816)
T ss_dssp HHHHHHHSG----GGCSSCHHHHSSCSCCCSCGGGEEECBBSSTTBSSCT-TTS------CBCSHHHHHHHHTTCCEEEE
T ss_pred HHHHHhhcc----cccccchhhcccccccCCchhhheecccccchhcccc-ccC------cccHHHHHHHHHhCCcEEEE
Confidence 588888754 22222222 2345889999999999999987621 112 11134677889999999999
Q ss_pred EEEee-CCcEEEEecCCCCcccCCCccCHHHHHHHHHHHHhcCCCCeEEEeeccccCC--cchhhHHHhhcCcCceeecC
Q 041719 78 DTYDY-KNDIWLCHASKGKCEDYTSFGPAREVFKEIEAFLSANKSEIVTLFLEDYVET--PKGLTKVFNETGLMKYWFPV 154 (292)
Q Consensus 78 rv~~~-~~~~~l~H~~~~~C~~~~~~~~l~d~L~ei~~fL~~nP~EvVil~l~~~~~~--~~~~~~~~~~~~l~~~~~~p 154 (292)
||+.. +++..++||. . ++...+|.++++.|+++-=..-.=-|||.|++.-.. .....+.+. .-|++.++.+
T Consensus 370 d~wdg~~~ePvv~HG~----T-lts~i~f~~v~~~I~~~AF~~S~yPvIlslE~Hc~~~qQ~~ma~~~~-~~~Gd~L~~~ 443 (816)
T 3qr0_A 370 DCWDGKDGEPIITHGF----T-MCTEVLFKDVVYAIAESAFKVSDYPVILSFENHCSVAQQKLLAQYCN-EAFGELLLDK 443 (816)
T ss_dssp EEECCTTSSCEECCTT----S-SCCCEEHHHHHHHHHHHTTSSCCSCEEEEEEECCCHHHHHHHHHHHH-HHHGGGBCCS
T ss_pred EEecCCCCCceEccCC----c-ccccccHHHHHHHHHHhcccCCCCCEEEEEecCCCHHHHHHHHHHHH-HHhhhhhccC
Confidence 99875 4678899995 2 333478999999999875433223479999954311 122334444 4467777753
Q ss_pred CC--CC-CCCCCCCcHHHHHhCCcEEEEE
Q 041719 155 SK--MP-QNGQDWPLVRDMVASNQRLVVF 180 (292)
Q Consensus 155 ~~--~~-~~~~~wPTL~el~~~gkrvivf 180 (292)
.. .+ ......|+.++|. || |||-
T Consensus 444 ~~~~~~~~~~~~lpsP~~Lk--~k-Ilik 469 (816)
T 3qr0_A 444 PIDGHPLKPGVPLPTPYDLR--KK-ILIK 469 (816)
T ss_dssp CCTTCCSSTTCCCCCTTTTT--TC-EEEE
T ss_pred CccccccccCCcCCCHHHHc--CC-EEEE
Confidence 21 11 1134789999996 54 5544
No 8
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=98.09 E-value=1.5e-05 Score=82.49 Aligned_cols=159 Identities=21% Similarity=0.285 Sum_probs=102.4
Q ss_pred hHHhhhhhheeecccccccccC----CCCCccCCceeeeccCccCCCCCCCCCCcccccccCCchhHHHHHHccCcEEEE
Q 041719 2 AFLRYLQSIIITSVCFSVVATA----KNDSLPFNKYAFLTTHNSFAISEGRHSGLFSLVITNQDDKITQQLNHGVRALML 77 (292)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~pl~~l~ipGTHnS~~~~~~~~~g~~~~~~~nQ~~si~~QL~~GvR~ldl 77 (292)
+|.+||.+- -+.+..|.. ...+.||+++-|-.|||+|-.+.. ..| ..=......-|..|.|-++|
T Consensus 294 gF~~yL~S~----~~~~~~~~~~~v~~dm~~Pls~YfI~ssHNtYL~g~Q-l~~------~ss~~~y~~aL~~gcRcvEl 362 (885)
T 3ohm_B 294 GFSRYLGGE----ENGILPLEALDLSTDMTQPLSAYFINSSHNTYLTAGQ-LAG------TSSVEMYRQALLWGCRCVEL 362 (885)
T ss_dssp HHHHHHTST----TSCSSCHHHHSSCSCCCSCGGGEEECCBSSTTBSSCS-SEE------CBCSHHHHHHHHTTCCEEEE
T ss_pred hhhhhccCc----ccCccCccccccccccCcchhhheeeccccceecccc-ccC------cCcHHHHHHHHHhCCCEEEE
Confidence 588888643 333333332 345889999999999999986622 111 12234577889999999999
Q ss_pred EEEee---CCcEEEEecCCCCcccCCCccCHHHHHHHHHHHHhcCCCCeEEEeeccccCCc---chhhHHHhhcCcCcee
Q 041719 78 DTYDY---KNDIWLCHASKGKCEDYTSFGPAREVFKEIEAFLSANKSEIVTLFLEDYVETP---KGLTKVFNETGLMKYW 151 (292)
Q Consensus 78 rv~~~---~~~~~l~H~~~~~C~~~~~~~~l~d~L~ei~~fL~~nP~EvVil~l~~~~~~~---~~~~~~~~~~~l~~~~ 151 (292)
||+.. +++..++||. . ++...+|.++++.|+++-=..-.=-|||.|++.-.++ ..+.+.+. .-|++.+
T Consensus 363 d~wdg~~~~~ep~v~hg~----t-~t~~i~f~~v~~~i~~~af~~s~yPvilsle~h~~~~~qq~~~a~~~~-~~~g~~L 436 (885)
T 3ohm_B 363 DVWKGRPPEEEPFITHGF----T-MTTEVPLRDVLEAIAETAFKTSPYPVILSFENHVDSAKQQAKMAEYCR-SIFGDAL 436 (885)
T ss_dssp EEECCCSSSCCCEECSTT----S-EECCEEHHHHHHHHHHHTTSSCCSCEEEEEEEECCCTTHHHHHHHHHH-HHHGGGB
T ss_pred EeeCCCCCCCCCEEeeCC----c-ccCcccHHHHHHHHHHhhccCCCCCEEEEEecCCCCHHHHHHHHHHHH-HHhhHhh
Confidence 99864 5789999995 2 2334789999999998654322234789999543112 22344444 4466777
Q ss_pred ecCC--CCC-CCCCCCCcHHHHHhCCcEEEEE
Q 041719 152 FPVS--KMP-QNGQDWPLVRDMVASNQRLVVF 180 (292)
Q Consensus 152 ~~p~--~~~-~~~~~wPTL~el~~~gkrvivf 180 (292)
+.+. ..+ ......|+.++|. || |||-
T Consensus 437 ~~~~~~~~~~~~~~~lpsp~~Lk--~k-ilik 465 (885)
T 3ohm_B 437 LIEPLDKYPLAPGVPLPSPQDLM--GR-ILVK 465 (885)
T ss_dssp CCSCBTTBCSSSSCCCCCTTTTT--TC-EEEE
T ss_pred ccCcccccccccCCcCCCHHHHc--Cc-EEEE
Confidence 7432 111 1234789999996 54 4443
No 9
>3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A*
Probab=76.62 E-value=4.5 Score=36.47 Aligned_cols=66 Identities=14% Similarity=0.244 Sum_probs=45.8
Q ss_pred chhHHHHHHccCcEEEEEEEee-CCc-EEEEecCC----CCcccCCCccCHHHHHHHHHHHHh----cCCCCe--EEEee
Q 041719 61 DDKITQQLNHGVRALMLDTYDY-KND-IWLCHASK----GKCEDYTSFGPAREVFKEIEAFLS----ANKSEI--VTLFL 128 (292)
Q Consensus 61 ~~si~~QL~~GvR~ldlrv~~~-~~~-~~l~H~~~----~~C~~~~~~~~l~d~L~ei~~fL~----~nP~Ev--Vil~l 128 (292)
-..|.+-++.|+..+|+||+.. ++. ++++||.. ..|.. ...+.+.|++|++=.. .++++. |++++
T Consensus 39 l~~~~~a~~~GAn~IE~DV~~~~dg~~v~~hhg~pcdc~r~C~~---~~~~~~~l~~lr~~ttpg~~k~~~~l~lv~~Dl 115 (302)
T 3rlg_A 39 IGQIDEFVNLGANSIETDVSFDDNANPEYTYHGIPCDCGRNCKK---YENFNDFLKGLRSATTPGNSKYQEKLVLVVFDL 115 (302)
T ss_dssp HHHHHHHHHTTCSEEEEEECBCTTSCBCBCCCCSSCCTTCCSCC---CCBHHHHHHHHHHHHSTTSTTCCTTCCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEEECCCCCEEEEECCCCcchhccCCC---CccHHHHHHHHHHhcCCCCCccccceEEEEEEc
Confidence 4578999999999999999874 444 55566632 12332 3688999999988775 344554 55666
Q ss_pred c
Q 041719 129 E 129 (292)
Q Consensus 129 ~ 129 (292)
+
T Consensus 116 K 116 (302)
T 3rlg_A 116 K 116 (302)
T ss_dssp C
T ss_pred C
Confidence 6
No 10
>1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A*
Probab=71.45 E-value=8.5 Score=33.62 Aligned_cols=68 Identities=16% Similarity=0.143 Sum_probs=45.7
Q ss_pred hhHHHHHHccCcEEEEEEEeeCCcEEEEecCCCCccc---CCCccCHHHHHHHHHHHHh-cCC---C--CeEEEeecc
Q 041719 62 DKITQQLNHGVRALMLDTYDYKNDIWLCHASKGKCED---YTSFGPAREVFKEIEAFLS-ANK---S--EIVTLFLED 130 (292)
Q Consensus 62 ~si~~QL~~GvR~ldlrv~~~~~~~~l~H~~~~~C~~---~~~~~~l~d~L~ei~~fL~-~nP---~--EvVil~l~~ 130 (292)
.++..-++.|+.++|+||+..+|.+.+.|... .|.+ -++.+.+.+.|.|+++.-. .+| + +.+.|.++.
T Consensus 18 ~Af~~A~~~Gad~IE~DV~lkDG~lVv~HD~~-~~~l~Rtt~~~g~v~d~l~eL~~l~~~~~~~~~~~L~~l~iEiK~ 94 (285)
T 1xx1_A 18 AQIPDFLDLGANALEADVTFKGSVPTYTYHGT-PCDFGRDCIRWEYFNVFLKTLREYTTPGNAKYRDGFILFVLDLKT 94 (285)
T ss_dssp THHHHHHHHTCSEEEEEEEEETTEEEEEECCS-SCCTTSCSCCEEEHHHHHHHHHHHTSTTCTTCCTTCCEEEEEECC
T ss_pred HHHHHHHHhCCCEEEEEEEEECCEEEEEcCCc-ccccccccCCCccHHHHHHHHHHcccCCCCcccccccEEEEecCC
Confidence 36788889999999999988667889999752 0111 1123568888999988643 111 2 256677774
No 11
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=70.78 E-value=23 Score=30.34 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=28.5
Q ss_pred CCchhHHHHHHccCcEEEEEEEe-eCCcEEEEecC
Q 041719 59 NQDDKITQQLNHGVRALMLDTYD-YKNDIWLCHAS 92 (292)
Q Consensus 59 nQ~~si~~QL~~GvR~ldlrv~~-~~~~~~l~H~~ 92 (292)
|=-.++..-++.|++++|+||+. .+|.+.++|..
T Consensus 18 NTl~af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~ 52 (250)
T 3ks6_A 18 STPHGFTATAAMALEEVEFDLHPTADGAIVVHHDP 52 (250)
T ss_dssp TCHHHHHHHHTSSSSEEEEEEEECTTSCEEECSSS
T ss_pred chHHHHHHHHHcCCCEEEEEEeEccCCCEEEECCC
Confidence 33457889999999999999997 57789999965
No 12
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=46.31 E-value=16 Score=31.41 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=27.7
Q ss_pred chhHHHHHHccCcEEEEEEEe-eCCcEEEEecC
Q 041719 61 DDKITQQLNHGVRALMLDTYD-YKNDIWLCHAS 92 (292)
Q Consensus 61 ~~si~~QL~~GvR~ldlrv~~-~~~~~~l~H~~ 92 (292)
-.++..-++.|+.++|+||+. .+|.+.++|..
T Consensus 26 l~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~ 58 (258)
T 2o55_A 26 LRSFVLCMERNIPYIETDLRVCKTGEIVLFHGT 58 (258)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECTTSCEEECCCS
T ss_pred HHHHHHHHHcCcCEEEEEEEEecCCeEEEEeCC
Confidence 457889999999999999997 57789999975
No 13
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3
Probab=45.59 E-value=22 Score=30.17 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=29.2
Q ss_pred cCCchhHHHHHHccCcEEEEEEEe-eCCcEEEEecC
Q 041719 58 TNQDDKITQQLNHGVRALMLDTYD-YKNDIWLCHAS 92 (292)
Q Consensus 58 ~nQ~~si~~QL~~GvR~ldlrv~~-~~~~~~l~H~~ 92 (292)
.|=-.++..-++.|+.++|+||+. .+|.+.++|..
T Consensus 27 ENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~ 62 (234)
T 1o1z_A 27 ENTLEAFMKAIEAGANGVELDVRLSKDGKVVVSHDE 62 (234)
T ss_dssp TTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSS
T ss_pred CchHHHHHHHHHcCCCEEEEEeeEecCCCEEEEcCC
Confidence 344568899999999999999997 56789999975
No 14
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=45.21 E-value=23 Score=29.70 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=28.7
Q ss_pred CCchhHHHHHHccCcEEEEEEEee-CCcEEEEecC
Q 041719 59 NQDDKITQQLNHGVRALMLDTYDY-KNDIWLCHAS 92 (292)
Q Consensus 59 nQ~~si~~QL~~GvR~ldlrv~~~-~~~~~l~H~~ 92 (292)
|=-.++..-++.|+.++|+||+.. +|.+.++|..
T Consensus 23 NTl~Af~~A~~~G~d~iE~DV~lT~Dg~lVv~HD~ 57 (224)
T 1vd6_A 23 NTLESFRLALEAGLDGVELDVWPTRDGVFAVRHDP 57 (224)
T ss_dssp TSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSCS
T ss_pred chHHHHHHHHHcCCCEEEEEeeEecCCcEEEECCC
Confidence 435678999999999999999975 7789999975
No 15
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=44.95 E-value=17 Score=30.97 Aligned_cols=68 Identities=10% Similarity=0.022 Sum_probs=43.9
Q ss_pred chhHHHHHHccCcEEEEEEEe-eCCcEEEEecCC--C------------CcccCCCccCHHHHHHHHHHHHhcCCCCeEE
Q 041719 61 DDKITQQLNHGVRALMLDTYD-YKNDIWLCHASK--G------------KCEDYTSFGPAREVFKEIEAFLSANKSEIVT 125 (292)
Q Consensus 61 ~~si~~QL~~GvR~ldlrv~~-~~~~~~l~H~~~--~------------~C~~~~~~~~l~d~L~ei~~fL~~nP~EvVi 125 (292)
-.++..-++.|+.++|+||+. .+|.+.++|... + ... ...+.+ .-.|+|+-+++..+|+-.+.
T Consensus 24 l~Af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~~l~~~~v~~~t~~el~~l~-~~~~~~-iptL~evl~~~~~~~~~~l~ 101 (238)
T 3no3_A 24 IRSLERASEIGAYGSEFDVHLTADNVLVVYHDNDIQGKHIQSCTYDELKDLQ-LSNGEK-LPTLEQYLKRAKKLKNIRLI 101 (238)
T ss_dssp HHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSEETTEEGGGSCHHHHTTCB-CTTSCB-CCBHHHHHHHHHHCTTCEEE
T ss_pred HHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCCCCCCChHhCCHHHHhhCC-CCCCCc-CCcHHHHHHHHhhcCCceEE
Confidence 467889999999999999997 567899999751 0 000 000000 01245555666677776778
Q ss_pred Eeecc
Q 041719 126 LFLED 130 (292)
Q Consensus 126 l~l~~ 130 (292)
|.++.
T Consensus 102 iEiK~ 106 (238)
T 3no3_A 102 FELKS 106 (238)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 88885
No 16
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=43.80 E-value=25 Score=29.89 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=28.6
Q ss_pred CCchhHHHHHHccCcEEEEEEEee-CCcEEEEecC
Q 041719 59 NQDDKITQQLNHGVRALMLDTYDY-KNDIWLCHAS 92 (292)
Q Consensus 59 nQ~~si~~QL~~GvR~ldlrv~~~-~~~~~l~H~~ 92 (292)
|=-.++..-++.|+.++|+||+.. +|.+.++|..
T Consensus 22 NTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~ 56 (247)
T 2otd_A 22 NTLAAIDVGAKYGHKMIEFDAKLSKDGEIFLLHDD 56 (247)
T ss_dssp SSHHHHHHHHHTTCSEEEEEEEECTTCCEEECSSS
T ss_pred hhHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCC
Confidence 335678899999999999999975 7789999975
No 17
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=43.22 E-value=26 Score=29.94 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=29.0
Q ss_pred cCCchhHHHHHHccCcEEEEEEEee-CCcEEEEecC
Q 041719 58 TNQDDKITQQLNHGVRALMLDTYDY-KNDIWLCHAS 92 (292)
Q Consensus 58 ~nQ~~si~~QL~~GvR~ldlrv~~~-~~~~~l~H~~ 92 (292)
.|=-.++..-++.|+.++|+||+.. +|.+.++|..
T Consensus 16 ENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~ 51 (248)
T 1zcc_A 16 ENTFAAADLALQQGADYIELDVRESADGVLYVIHDE 51 (248)
T ss_dssp SSSHHHHHHHHHTTCSEEEEEEEECTTCCEEECSSS
T ss_pred chHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCC
Confidence 3435678899999999999999974 7789999975
No 18
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=42.54 E-value=26 Score=29.97 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=28.3
Q ss_pred CCchhHHHHHHccCcEEEEEEEe-eCCcEEEEecC
Q 041719 59 NQDDKITQQLNHGVRALMLDTYD-YKNDIWLCHAS 92 (292)
Q Consensus 59 nQ~~si~~QL~~GvR~ldlrv~~-~~~~~~l~H~~ 92 (292)
|=-.++..-++.|+.++|+||+. .+|.+.++|..
T Consensus 25 NTl~af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~ 59 (252)
T 3qvq_A 25 NTLASLHLAGQQGIKWVEIDVMLSGDGIPVIFHDD 59 (252)
T ss_dssp TSHHHHHHHHHTTCSEEEEEEEECTTSCEEECCCS
T ss_pred cHHHHHHHHHHcCCCEEEEEEEECCCCcEEEECCC
Confidence 33467889999999999999997 57789999965
No 19
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=41.60 E-value=26 Score=29.97 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=29.3
Q ss_pred cCCchhHHHHHHccCcEEEEEEEe-eCCcEEEEecC
Q 041719 58 TNQDDKITQQLNHGVRALMLDTYD-YKNDIWLCHAS 92 (292)
Q Consensus 58 ~nQ~~si~~QL~~GvR~ldlrv~~-~~~~~~l~H~~ 92 (292)
.|=-.++..-++.|+.++|+||+. .+|.+.++|..
T Consensus 26 ENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~ 61 (252)
T 2pz0_A 26 ENTIAAFKRAMELGADGIELDVQLTKDGHLVVIHDE 61 (252)
T ss_dssp TTSHHHHHHHHHHTCSEEEEEEEECTTCCEEECSSS
T ss_pred cchHHHHHHHHHcCCCEEEEEEEEecCCeEEEEcCC
Confidence 444567889999999999999997 57889999975
No 20
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=40.32 E-value=35 Score=26.26 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=22.0
Q ss_pred cCHHHHHHHHHHHHhcCCCCeEEEe
Q 041719 103 GPAREVFKEIEAFLSANKSEIVTLF 127 (292)
Q Consensus 103 ~~l~d~L~ei~~fL~~nP~EvVil~ 127 (292)
....++|.||.+-+++||+|-|-|.
T Consensus 64 ~d~~~Vl~Ele~C~k~~p~~yVRli 88 (118)
T 3zxw_B 64 TNAQDVLNEVQQCRSEYPNCFIRVV 88 (118)
T ss_dssp CCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCceEEEE
Confidence 5789999999999999999987554
No 21
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=40.08 E-value=37 Score=25.80 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=21.8
Q ss_pred cCHHHHHHHHHHHHhcCCCCeEEEe
Q 041719 103 GPAREVFKEIEAFLSANKSEIVTLF 127 (292)
Q Consensus 103 ~~l~d~L~ei~~fL~~nP~EvVil~ 127 (292)
....++|.||.+-+++||+|-|-|.
T Consensus 65 ~d~~~Vl~Ele~C~k~~p~~yVRli 89 (109)
T 1rbl_M 65 AAPQQVLDEVRECRSEYGDCYIRVA 89 (109)
T ss_dssp CCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 5689999999999999999987544
No 22
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=40.07 E-value=28 Score=29.97 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=28.5
Q ss_pred cCCchhHHHHHHccCcEEEEEEEee-CCcEEEEecC
Q 041719 58 TNQDDKITQQLNHGVRALMLDTYDY-KNDIWLCHAS 92 (292)
Q Consensus 58 ~nQ~~si~~QL~~GvR~ldlrv~~~-~~~~~l~H~~ 92 (292)
.|=-.++..-++.|+.++|+||+.. +|.+.++|..
T Consensus 23 ENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~ 58 (272)
T 3ch0_A 23 ENTIAAFTKALLLGVTTLEFDLVISKDNRVVVSHDT 58 (272)
T ss_dssp TTSHHHHHHHHHHTCSEEEEEEEECTTCCEEECSSS
T ss_pred cccHHHHHHHHHcCCCEEEEeeeEcCCCcEEEeCCC
Confidence 3435678889999999999999964 6788999975
No 23
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=40.04 E-value=36 Score=25.90 Aligned_cols=25 Identities=36% Similarity=0.329 Sum_probs=21.8
Q ss_pred cCHHHHHHHHHHHHhcCCCCeEEEe
Q 041719 103 GPAREVFKEIEAFLSANKSEIVTLF 127 (292)
Q Consensus 103 ~~l~d~L~ei~~fL~~nP~EvVil~ 127 (292)
....++|.||.+-+++||+|-|-|.
T Consensus 67 ~d~~~Vl~El~~C~k~~p~~yVRli 91 (110)
T 1svd_M 67 QNVDNVLAEIEACRSAYPTHQVKLV 91 (110)
T ss_dssp CCHHHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 5689999999999999999987544
No 24
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=36.28 E-value=27 Score=30.98 Aligned_cols=32 Identities=25% Similarity=0.196 Sum_probs=27.3
Q ss_pred chhHHHHHHccCcEEEEEEEe-eCCcEEEEecC
Q 041719 61 DDKITQQLNHGVRALMLDTYD-YKNDIWLCHAS 92 (292)
Q Consensus 61 ~~si~~QL~~GvR~ldlrv~~-~~~~~~l~H~~ 92 (292)
-.++..-++.|+.++|+||+. .+|.+.++|..
T Consensus 35 l~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~ 67 (313)
T 3l12_A 35 LEGFAFTLAAGVRALEFDVVMTADGVPVVTHNH 67 (313)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECTTSCEEECSSS
T ss_pred HHHHHHHHHcCCCEEEEEEEECCCCCEEEECCc
Confidence 467889999999999999997 56788889964
No 25
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=35.95 E-value=45 Score=26.41 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=21.9
Q ss_pred cCHHHHHHHHHHHHhcCCCCeEEEe
Q 041719 103 GPAREVFKEIEAFLSANKSEIVTLF 127 (292)
Q Consensus 103 ~~l~d~L~ei~~fL~~nP~EvVil~ 127 (292)
....++|.||.+-+++||++-|-|.
T Consensus 59 td~~~Vl~Ele~C~k~~p~~YVRli 83 (138)
T 1bwv_S 59 TDPAAVLFEINACRKARSNFYIKVV 83 (138)
T ss_dssp CCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 5689999999999999999987544
No 26
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=35.16 E-value=45 Score=26.42 Aligned_cols=25 Identities=12% Similarity=0.103 Sum_probs=21.9
Q ss_pred cCHHHHHHHHHHHHhcCCCCeEEEe
Q 041719 103 GPAREVFKEIEAFLSANKSEIVTLF 127 (292)
Q Consensus 103 ~~l~d~L~ei~~fL~~nP~EvVil~ 127 (292)
....++|.||.+-+++||++-|-|.
T Consensus 59 td~~~Vl~Ele~C~k~~p~~YVRli 83 (139)
T 1bxn_I 59 RDAAGILMEINNARNTFPNHYIRVT 83 (139)
T ss_dssp CCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 5689999999999999999987544
No 27
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.67 E-value=22 Score=21.68 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHhcCCCCe
Q 041719 104 PAREVFKEIEAFLSANKSEI 123 (292)
Q Consensus 104 ~l~d~L~ei~~fL~~nP~Ev 123 (292)
.|-+-|++|++|=+.+|+|+
T Consensus 14 ~FY~rlk~Ike~Hrr~P~~~ 33 (38)
T 2dt7_A 14 EFYNRLKQIKEFHRKHPNEI 33 (38)
T ss_dssp HHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHHHhCCCcc
Confidence 46778999999999999997
No 28
>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis}
Probab=33.86 E-value=27 Score=30.88 Aligned_cols=32 Identities=16% Similarity=0.108 Sum_probs=27.5
Q ss_pred chhHHHHHHccCcEEEEEEEe-eCCcEEEEecC
Q 041719 61 DDKITQQLNHGVRALMLDTYD-YKNDIWLCHAS 92 (292)
Q Consensus 61 ~~si~~QL~~GvR~ldlrv~~-~~~~~~l~H~~ 92 (292)
-.++..-++.|+.++|+||+. .+|.+.++|..
T Consensus 50 l~af~~A~~~g~d~iE~Dv~~TkDg~~Vv~HD~ 82 (292)
T 3mz2_A 50 METFENTLSYTPATFEIDPRLTKDSVIVLFHDD 82 (292)
T ss_dssp HHHHHHHHHHCCCEEEECEEECTTCCEEECCSS
T ss_pred HHHHHHHHHcCCCEEEEEEeECCCCcEEEECCc
Confidence 457888999999999999997 57789999965
No 29
>1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A
Probab=32.41 E-value=33 Score=31.00 Aligned_cols=32 Identities=13% Similarity=0.065 Sum_probs=27.1
Q ss_pred chhHHHHHHccCcEEEEEEEee-CCcEEEEecC
Q 041719 61 DDKITQQLNHGVRALMLDTYDY-KNDIWLCHAS 92 (292)
Q Consensus 61 ~~si~~QL~~GvR~ldlrv~~~-~~~~~l~H~~ 92 (292)
-.++..-++.|+.++|+||+.. +|.+.++|..
T Consensus 48 l~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~ 80 (356)
T 1ydy_A 48 LPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDH 80 (356)
T ss_dssp HHHHHHHHHTTCSEEEEEEEECTTSCEEECSSS
T ss_pred HHHHHHHHHcCCCEEEeeeEECCCCcEEEeCCC
Confidence 4678889999999999999964 6788888964
No 30
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=31.32 E-value=59 Score=25.70 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=21.9
Q ss_pred cCHHHHHHHHHHHHhcCCCCeEEEe
Q 041719 103 GPAREVFKEIEAFLSANKSEIVTLF 127 (292)
Q Consensus 103 ~~l~d~L~ei~~fL~~nP~EvVil~ 127 (292)
....++|.||.+-+++||++-|-|.
T Consensus 59 ~d~~~Vl~Ele~C~k~~p~~YVRli 83 (138)
T 4f0h_B 59 TDPAPVLFEINACRKAKSNFYIKVV 83 (138)
T ss_dssp CSHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 5789999999999999999987444
No 31
>3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482}
Probab=30.60 E-value=52 Score=28.85 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=28.8
Q ss_pred cCCchhHHHHHHccCcEEEEEEEe-eCCcEEEEecC
Q 041719 58 TNQDDKITQQLNHGVRALMLDTYD-YKNDIWLCHAS 92 (292)
Q Consensus 58 ~nQ~~si~~QL~~GvR~ldlrv~~-~~~~~~l~H~~ 92 (292)
.|=-.++..-++.|+.++|+||+. .+|.+.++|..
T Consensus 32 ENTl~af~~A~~~g~d~iE~Dv~~TkDg~~vv~HD~ 67 (278)
T 3i10_A 32 ENSTAAIDSAIAMKVDIVEIDIQKTKDGQLILMHDN 67 (278)
T ss_dssp TTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSS
T ss_pred ccHHHHHHHHHHcCCCEEEEEEEECCCCeEEEecCc
Confidence 344567899999999999999987 56788889964
No 32
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=29.78 E-value=19 Score=26.94 Aligned_cols=14 Identities=36% Similarity=0.710 Sum_probs=12.3
Q ss_pred HHHHHHHhcCCCCe
Q 041719 110 KEIEAFLSANKSEI 123 (292)
Q Consensus 110 ~ei~~fL~~nP~Ev 123 (292)
-+|++||++||+|+
T Consensus 32 P~V~~Fl~~h~~~l 45 (106)
T 2k7r_A 32 QDVQAFLKENEEVI 45 (106)
T ss_dssp HHHHHHHHHSTTTC
T ss_pred HHHHHHHHHChhhC
Confidence 47899999999887
No 33
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=29.63 E-value=95 Score=23.75 Aligned_cols=66 Identities=12% Similarity=0.153 Sum_probs=36.2
Q ss_pred cCHHHHHHHHHHHHhcCCCCeEEEeeccccCCcchhhHHHhhcCcCceeecCCCCCCCCCCCCcHHHHHhCCcE-EEEEE
Q 041719 103 GPAREVFKEIEAFLSANKSEIVTLFLEDYVETPKGLTKVFNETGLMKYWFPVSKMPQNGQDWPLVRDMVASNQR-LVVFT 181 (292)
Q Consensus 103 ~~l~d~L~ei~~fL~~nP~EvVil~l~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~wPTL~el~~~gkr-vivf~ 181 (292)
..|.++++++++.-+ +|+|+ ++-+ .+..++ .+.|..+.+..- +...+..-++..+.++ ||+|+
T Consensus 6 ~~l~e~~~~l~~~s~---~~vIv--VEGk----~D~~~L-~~~g~~~iI~t~------Gtal~~~i~~l~~~~~~VIIlt 69 (118)
T 1t6t_1 6 RNLSEWIKELKKASR---EAVIL--VEGK----NDKKAL-SKFSIKNVIDLS------GKRYADVVDMLEGKWEKVILLF 69 (118)
T ss_dssp CSHHHHHHHHHHHTT---TSEEE--ESSH----HHHHHH-HTTTCCCEEECT------TSCHHHHHHHHTTTCSEEEECC
T ss_pred HHHHHHHHHHHHhcC---CcEEE--EECh----HHHHHH-HHhCcCcEEEEC------CCcHHHHHHHHHhCCCEEEEEE
Confidence 468888999988875 56544 4422 122233 335555444321 1122334444555666 99999
Q ss_pred cCC
Q 041719 182 SKK 184 (292)
Q Consensus 182 ~~~ 184 (292)
|..
T Consensus 70 D~D 72 (118)
T 1t6t_1 70 DLD 72 (118)
T ss_dssp CSS
T ss_pred CCC
Confidence 864
No 34
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=29.29 E-value=53 Score=28.53 Aligned_cols=32 Identities=6% Similarity=-0.018 Sum_probs=26.3
Q ss_pred chhHHHH-HHccCcEEEEEEEee-CCcEEEEecC
Q 041719 61 DDKITQQ-LNHGVRALMLDTYDY-KNDIWLCHAS 92 (292)
Q Consensus 61 ~~si~~Q-L~~GvR~ldlrv~~~-~~~~~l~H~~ 92 (292)
-.++..- ++.|+.++|+||+.. +|.+.++|..
T Consensus 41 l~Af~~A~~~~Gad~iE~DV~lTkDG~lVv~HD~ 74 (287)
T 2oog_A 41 FQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDE 74 (287)
T ss_dssp HHHHHHHHHTSCCSEEEEEEEECTTCCEEECSSS
T ss_pred HHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCC
Confidence 3467777 689999999999975 7789999975
No 35
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=28.17 E-value=36 Score=21.38 Aligned_cols=26 Identities=19% Similarity=0.501 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHhcCCCCeEEEeec
Q 041719 104 PAREVFKEIEAFLSANKSEIVTLFLE 129 (292)
Q Consensus 104 ~l~d~L~ei~~fL~~nP~EvVil~l~ 129 (292)
.+.++|.+|-.-|+.|..|+|-=+++
T Consensus 15 ~~D~lLDeId~vLE~NAeeFV~~fVQ 40 (44)
T 3m91_B 15 ETDDLLDEIDDVLEENAEDFVRAYVQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHTC---------
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 47899999999999999998865554
No 36
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=26.77 E-value=78 Score=25.07 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=21.6
Q ss_pred cCHHHHHHHHHHHHhcCCCCeEEEe
Q 041719 103 GPAREVFKEIEAFLSANKSEIVTLF 127 (292)
Q Consensus 103 ~~l~d~L~ei~~fL~~nP~EvVil~ 127 (292)
....++|.||.+-+++||++-|-|.
T Consensus 84 td~~qVl~El~~C~k~~P~~YVRli 108 (140)
T 1gk8_I 84 RDPMQVLREIVACTKAFPDAYVRLV 108 (140)
T ss_dssp CCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 5689999999999999999987443
No 37
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=26.22 E-value=82 Score=24.54 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.6
Q ss_pred cCHHHHHHHHHHHHhcCCCCeEEEe
Q 041719 103 GPAREVFKEIEAFLSANKSEIVTLF 127 (292)
Q Consensus 103 ~~l~d~L~ei~~fL~~nP~EvVil~ 127 (292)
....++|.||.+-+++||++-|-|.
T Consensus 77 td~~~Vl~El~~C~k~~P~~YVRli 101 (128)
T 1wdd_S 77 TDATQVLKELEEAKKAYPDAFVRII 101 (128)
T ss_dssp CCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 5689999999999999999977443
No 38
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=21.94 E-value=2.1e+02 Score=24.92 Aligned_cols=58 Identities=12% Similarity=0.003 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHhcCCCCeEEEeeccccC-CcchhhHHHhhcCcCceeecCCCCCCCCCCCCcHHHHHhCCcEEEEEEc
Q 041719 104 PAREVFKEIEAFLSANKSEIVTLFLEDYVE-TPKGLTKVFNETGLMKYWFPVSKMPQNGQDWPLVRDMVASNQRLVVFTS 182 (292)
Q Consensus 104 ~l~d~L~ei~~fL~~nP~EvVil~l~~~~~-~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~wPTL~el~~~gkrvivf~~ 182 (292)
...++|.|...|++++....++|++--... +++.+..+.+ .+.+|.+.|.+|||...
T Consensus 9 ~~~~~~~~a~pyi~~~~~k~iVIKlGGs~l~~~~~~~~~~~----------------------~i~~l~~~G~~vVlVhG 66 (300)
T 2buf_A 9 QVAKVLSEALPYIRRFVGKTLVIKYGGNAMESEELKAGFAR----------------------DVVLMKAVGINPVVVHG 66 (300)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSSHHHHHHHH----------------------HHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHhHHHHHhcCCeEEEEECchhhCCchHHHHHHH----------------------HHHHHHHCCCeEEEEEC
Confidence 467899999999999999999999984322 2221222221 34567777888887765
Q ss_pred C
Q 041719 183 K 183 (292)
Q Consensus 183 ~ 183 (292)
.
T Consensus 67 g 67 (300)
T 2buf_A 67 G 67 (300)
T ss_dssp C
T ss_pred C
Confidence 4
No 39
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=20.03 E-value=52 Score=27.98 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhcCC----CCeEEEeec
Q 041719 106 REVFKEIEAFLSANK----SEIVTLFLE 129 (292)
Q Consensus 106 ~d~L~ei~~fL~~nP----~EvVil~l~ 129 (292)
.-.+++|++||++|+ +||+++.+.
T Consensus 171 ~i~~~~v~~fl~~~~~~~l~~V~fv~f~ 198 (221)
T 3q71_A 171 ELIISEVFKFSSKNQLKTLQEVHFLLHP 198 (221)
T ss_dssp HHHHHHHHHHHHHCCCSSCCEEEEEECT
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEEeC
Confidence 446799999999884 356555554
Done!