Query 041723
Match_columns 228
No_of_seqs 130 out of 1833
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 10:00:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 5.6E-25 1.2E-29 204.6 11.0 211 3-218 147-370 (968)
2 PLN00113 leucine-rich repeat r 99.9 6.2E-24 1.3E-28 197.6 10.5 210 2-216 170-392 (968)
3 KOG4194 Membrane glycoprotein 99.8 4.5E-22 9.7E-27 167.5 3.5 214 3-227 204-457 (873)
4 KOG4194 Membrane glycoprotein 99.8 8.6E-21 1.9E-25 159.8 5.4 214 1-219 83-332 (873)
5 KOG4237 Extracellular matrix p 99.8 1E-20 2.3E-25 152.7 1.4 215 2-227 73-364 (498)
6 KOG0444 Cytoskeletal regulator 99.8 3.4E-21 7.4E-26 163.7 -3.4 211 1-218 131-353 (1255)
7 KOG0444 Cytoskeletal regulator 99.7 2.8E-19 6E-24 152.2 1.2 214 2-226 13-289 (1255)
8 KOG0472 Leucine-rich repeat pr 99.7 4.8E-20 1E-24 149.3 -4.7 196 16-222 64-293 (565)
9 KOG0617 Ras suppressor protein 99.7 1E-19 2.2E-24 132.3 -3.8 158 15-196 28-190 (264)
10 KOG0472 Leucine-rich repeat pr 99.7 7.8E-19 1.7E-23 142.4 0.2 206 2-217 212-541 (565)
11 KOG0617 Ras suppressor protein 99.7 4.5E-19 9.8E-24 128.9 -3.8 159 36-220 29-189 (264)
12 KOG0618 Serine/threonine phosp 99.6 5.4E-17 1.2E-21 143.1 1.7 186 20-216 241-464 (1081)
13 KOG4237 Extracellular matrix p 99.5 5.1E-16 1.1E-20 125.8 -2.7 195 21-220 68-338 (498)
14 KOG0532 Leucine-rich repeat (L 99.5 7.9E-16 1.7E-20 129.7 -1.9 179 17-224 72-255 (722)
15 PRK15387 E3 ubiquitin-protein 99.5 3.4E-14 7.4E-19 127.2 8.0 158 40-222 302-463 (788)
16 PRK15370 E3 ubiquitin-protein 99.5 2.8E-14 6E-19 128.1 7.3 188 3-218 206-402 (754)
17 cd00116 LRR_RI Leucine-rich re 99.5 1.3E-15 2.8E-20 125.0 -1.2 203 16-223 47-297 (319)
18 PLN03210 Resistant to P. syrin 99.5 9.1E-14 2E-18 131.4 10.4 93 3-99 618-715 (1153)
19 KOG0618 Serine/threonine phosp 99.5 8.2E-15 1.8E-19 129.5 0.6 177 14-215 281-487 (1081)
20 cd00116 LRR_RI Leucine-rich re 99.5 6.1E-15 1.3E-19 121.0 -0.3 199 14-215 75-318 (319)
21 PLN03210 Resistant to P. syrin 99.4 4.3E-13 9.4E-18 126.9 10.9 188 15-214 652-903 (1153)
22 PRK15370 E3 ubiquitin-protein 99.4 2.7E-13 5.9E-18 121.8 7.1 191 2-217 226-428 (754)
23 PRK15387 E3 ubiquitin-protein 99.4 1.1E-12 2.3E-17 117.7 7.4 146 3-166 208-375 (788)
24 KOG0532 Leucine-rich repeat (L 99.3 1.9E-13 4.1E-18 115.6 -2.8 187 11-227 46-233 (722)
25 PF14580 LRR_9: Leucine-rich r 99.3 4.7E-12 1E-16 94.5 4.8 125 63-210 18-146 (175)
26 COG4886 Leucine-rich repeat (L 99.2 1.1E-11 2.3E-16 105.0 4.0 172 18-217 114-290 (394)
27 PF14580 LRR_9: Leucine-rich r 99.2 4.1E-11 9E-16 89.4 5.5 122 73-219 4-128 (175)
28 KOG1259 Nischarin, modulator o 99.2 5.4E-12 1.2E-16 99.7 0.5 130 64-219 284-414 (490)
29 KOG3207 Beta-tubulin folding c 99.1 9.7E-12 2.1E-16 102.3 0.1 84 16-101 117-210 (505)
30 PLN03150 hypothetical protein; 99.1 2.7E-10 5.8E-15 101.6 8.4 94 119-215 432-526 (623)
31 KOG1259 Nischarin, modulator o 99.1 5.2E-12 1.1E-16 99.8 -3.7 132 39-194 283-414 (490)
32 COG4886 Leucine-rich repeat (L 99.1 1.2E-10 2.6E-15 98.6 4.0 171 24-221 97-272 (394)
33 PLN03150 hypothetical protein; 99.0 7.6E-10 1.7E-14 98.7 6.2 107 66-193 420-529 (623)
34 KOG3207 Beta-tubulin folding c 99.0 9E-11 2E-15 96.7 -0.3 182 15-218 141-340 (505)
35 KOG1909 Ran GTPase-activating 99.0 1.6E-10 3.5E-15 92.8 0.9 199 14-216 52-310 (382)
36 KOG1909 Ran GTPase-activating 98.9 1.7E-09 3.7E-14 87.0 4.4 204 15-220 25-286 (382)
37 PF13855 LRR_8: Leucine rich r 98.9 1.4E-09 3.1E-14 67.1 2.8 59 130-190 2-60 (61)
38 PF13855 LRR_8: Leucine rich r 98.8 2.7E-09 5.9E-14 65.8 3.5 61 153-216 1-61 (61)
39 KOG0531 Protein phosphatase 1, 98.7 1.4E-09 3.1E-14 92.7 -0.6 83 15-101 90-175 (414)
40 KOG0531 Protein phosphatase 1, 98.5 7.4E-09 1.6E-13 88.3 -2.0 175 18-218 70-269 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.4 1.7E-07 3.7E-12 86.2 4.1 84 10-96 561-650 (889)
42 KOG1859 Leucine-rich repeat pr 98.4 7.2E-09 1.6E-13 90.7 -6.3 20 13-32 102-121 (1096)
43 KOG1859 Leucine-rich repeat pr 98.4 9.4E-09 2E-13 90.0 -5.6 170 34-215 103-290 (1096)
44 KOG2120 SCF ubiquitin ligase, 98.3 2.4E-08 5.3E-13 79.2 -3.1 164 21-190 186-374 (419)
45 KOG4579 Leucine-rich repeat (L 98.3 1E-07 2.2E-12 67.4 -0.1 103 20-142 27-136 (177)
46 KOG4579 Leucine-rich repeat (L 98.2 9.2E-08 2E-12 67.6 -2.1 86 88-194 53-138 (177)
47 KOG2982 Uncharacterized conser 98.2 3.5E-07 7.7E-12 72.7 0.8 188 20-210 71-285 (418)
48 KOG4658 Apoptotic ATPase [Sign 98.2 6.7E-07 1.5E-11 82.4 2.3 95 21-117 546-647 (889)
49 PF12799 LRR_4: Leucine Rich r 98.1 4.7E-06 1E-10 47.5 3.7 35 131-166 3-37 (44)
50 COG5238 RNA1 Ran GTPase-activa 98.1 1.4E-06 2.9E-11 68.6 1.8 94 126-219 182-287 (388)
51 PF12799 LRR_4: Leucine Rich r 98.0 6.8E-06 1.5E-10 46.8 3.5 39 153-194 1-39 (44)
52 KOG2982 Uncharacterized conser 98.0 7E-07 1.5E-11 71.0 -0.9 61 39-101 70-134 (418)
53 KOG2120 SCF ubiquitin ligase, 98.0 1.1E-06 2.3E-11 70.1 -0.9 147 15-166 205-376 (419)
54 KOG1644 U2-associated snRNP A' 98.0 1.2E-05 2.7E-10 60.5 4.7 127 42-189 21-150 (233)
55 PRK15386 type III secretion pr 98.0 2.2E-05 4.7E-10 66.1 6.4 54 19-76 51-104 (426)
56 KOG1644 U2-associated snRNP A' 97.9 1.5E-05 3.2E-10 60.1 4.5 126 21-166 20-153 (233)
57 COG5238 RNA1 Ran GTPase-activa 97.8 1.2E-05 2.6E-10 63.4 2.1 180 34-218 86-317 (388)
58 KOG3665 ZYG-1-like serine/thre 97.7 2.2E-05 4.9E-10 70.8 2.9 88 126-217 170-263 (699)
59 KOG2739 Leucine-rich acidic nu 97.5 4.5E-05 9.9E-10 59.6 1.5 109 58-185 37-149 (260)
60 KOG3665 ZYG-1-like serine/thre 97.4 0.00036 7.8E-09 63.1 5.9 130 20-167 122-264 (699)
61 PRK15386 type III secretion pr 97.2 0.00056 1.2E-08 57.8 5.3 137 36-190 48-188 (426)
62 KOG2123 Uncharacterized conser 97.2 0.00014 3.1E-09 57.7 1.0 86 16-105 15-105 (388)
63 KOG2739 Leucine-rich acidic nu 96.9 0.00068 1.5E-08 53.1 2.8 84 125-210 61-149 (260)
64 KOG2123 Uncharacterized conser 96.9 2.2E-05 4.8E-10 62.1 -5.5 102 87-210 18-123 (388)
65 PF13306 LRR_5: Leucine rich r 96.3 0.0046 9.9E-08 43.5 3.5 14 149-162 77-90 (129)
66 PF13306 LRR_5: Leucine rich r 96.2 0.0029 6.2E-08 44.5 2.1 103 36-162 8-112 (129)
67 PF00560 LRR_1: Leucine Rich R 95.8 0.0043 9.4E-08 29.5 0.8 21 41-62 1-21 (22)
68 KOG4308 LRR-containing protein 95.4 0.0003 6.4E-09 61.0 -7.0 186 22-218 89-304 (478)
69 PF00560 LRR_1: Leucine Rich R 95.3 0.0081 1.7E-07 28.5 0.8 11 132-142 3-13 (22)
70 PF13504 LRR_7: Leucine rich r 93.6 0.047 1E-06 24.1 1.2 17 88-105 1-17 (17)
71 KOG4308 LRR-containing protein 93.0 0.0036 7.9E-08 54.4 -5.4 177 2-193 93-304 (478)
72 KOG1947 Leucine rich repeat pr 91.7 0.043 9.3E-07 47.4 -0.5 14 202-215 360-373 (482)
73 smart00370 LRR Leucine-rich re 91.4 0.19 4.2E-06 24.6 2.0 22 39-60 1-22 (26)
74 smart00369 LRR_TYP Leucine-ric 91.4 0.19 4.2E-06 24.6 2.0 22 39-60 1-22 (26)
75 KOG0473 Leucine-rich repeat pr 91.4 0.0047 1E-07 48.1 -5.9 92 79-192 31-124 (326)
76 PF13516 LRR_6: Leucine Rich r 90.6 0.028 6.2E-07 27.1 -1.6 18 204-221 2-19 (24)
77 KOG4341 F-box protein containi 89.1 0.19 4.1E-06 42.5 1.2 144 61-210 291-458 (483)
78 KOG1947 Leucine rich repeat pr 88.8 0.35 7.7E-06 41.7 2.8 132 62-210 186-327 (482)
79 KOG4341 F-box protein containi 88.7 0.37 8.1E-06 40.8 2.6 152 21-186 295-459 (483)
80 KOG3864 Uncharacterized conser 87.4 0.34 7.3E-06 37.1 1.5 12 64-77 151-162 (221)
81 smart00368 LRR_RI Leucine rich 86.5 0.1 2.2E-06 26.3 -1.2 21 204-224 2-22 (28)
82 KOG0473 Leucine-rich repeat pr 86.4 0.073 1.6E-06 41.6 -2.5 83 16-101 38-124 (326)
83 KOG3864 Uncharacterized conser 86.3 0.086 1.9E-06 40.2 -2.1 79 131-211 103-183 (221)
84 smart00364 LRR_BAC Leucine-ric 76.4 1.9 4.1E-05 21.3 1.3 18 88-106 2-19 (26)
85 smart00365 LRR_SD22 Leucine-ri 75.5 2.5 5.4E-05 20.8 1.6 16 39-54 1-16 (26)
86 KOG3763 mRNA export factor TAP 63.0 4.6 0.0001 35.7 1.7 74 17-94 215-307 (585)
87 KOG3763 mRNA export factor TAP 57.8 7.3 0.00016 34.5 2.0 81 127-210 216-307 (585)
88 smart00367 LRR_CC Leucine-rich 47.4 14 0.0003 17.8 1.3 13 39-51 1-13 (26)
89 TIGR00864 PCC polycystin catio 26.0 51 0.0011 35.4 2.4 32 135-166 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=5.6e-25 Score=204.57 Aligned_cols=211 Identities=29% Similarity=0.388 Sum_probs=150.4
Q ss_pred CcCCcccccchhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723 3 HHGTRKKKIATAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE 78 (228)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~ 78 (228)
+++|.+....+..++.+++|++|++++|. +|+.+.++++|++|++++|.+.+..|..+..+++|++|+ +++|.+
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~--L~~n~l 224 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY--LGYNNL 224 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE--CcCCcc
Confidence 44555555566667777777777777765 466677777777777777777766777777777777777 777777
Q ss_pred -CCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccc-------cccccccchhhhcCCCCCEEeccCCcccccCcccc
Q 041723 79 -NFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSI 149 (228)
Q Consensus 79 -~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~-------~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 149 (228)
+.+| .++.+++|++|++++|.+++.+|..++.++.+ +.+.+.+|..++.+++|+.|++++|.+.+.+|..+
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH
Confidence 4566 67777777777777777776777766666553 23445667777777777777777777776677777
Q ss_pred ccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccccc
Q 041723 150 FELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLAS 218 (228)
Q Consensus 150 ~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~ 218 (228)
..+++|+.|++++|.+++ .+|..+..+++|+.|++++|.+++..|.. +..+++|+.+++++|++++
T Consensus 305 ~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTG--KIPVALTSLPRLQVLQLWSNKFSGEIPKN-LGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred cCCCCCcEEECCCCccCC--cCChhHhcCCCCCEEECcCCCCcCcCChH-HhCCCCCcEEECCCCeeEe
Confidence 777777777777777776 66777777777777777777777776766 6777777777777777764
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=6.2e-24 Score=197.64 Aligned_cols=210 Identities=29% Similarity=0.357 Sum_probs=143.2
Q ss_pred CCcCCcccccchhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
++++|.+....+..++.+++|++|++++|. +|+.+.++++|++|++++|.+.+..|..+..+++|++|+ +++|.
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~--L~~n~ 247 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD--LVYNN 247 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE--CcCce
Confidence 456777776777778888888888888876 567778888888888888888777787788888888888 88887
Q ss_pred C-CCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccc-------cccccccchhhhcCCCCCEEeccCCcccccCccc
Q 041723 78 E-NFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSS 148 (228)
Q Consensus 78 ~-~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~-------~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 148 (228)
+ +.+| .++.+++|+.|++++|.+.+.+|..++.++++ +.+.+.+|..+..+++|+.|++++|.+.+..|..
T Consensus 248 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 7 5666 77777888888888887777777776665553 3334566666666677777777777666666666
Q ss_pred cccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccc
Q 041723 149 IFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETL 216 (228)
Q Consensus 149 ~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~ 216 (228)
+..+++|+.|++++|.+++ .+|..+..+.+|+.+++++|.+++..|.. ++.+++|+.+++++|.+
T Consensus 328 ~~~l~~L~~L~L~~n~l~~--~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~-~~~~~~L~~L~l~~n~l 392 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSG--EIPKNLGKHNNLTVLDLSTNNLTGEIPEG-LCSSGNLFKLILFSNSL 392 (968)
T ss_pred HhcCCCCCEEECcCCCCcC--cCChHHhCCCCCcEEECCCCeeEeeCChh-HhCcCCCCEEECcCCEe
Confidence 6666666666666666665 55666666666666666666655544444 44444444444444433
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=4.5e-22 Score=167.48 Aligned_cols=214 Identities=21% Similarity=0.191 Sum_probs=165.7
Q ss_pred CcCCcccccchhhhcccccccccccCCCCh-----------H-----------------HHHhccCCCCeeecCCccCCC
Q 041723 3 HHGTRKKKIATAAYGTASNAMKTLLQSPSL-----------A-----------------NLAEKLANLKVLHLGQVNTAS 54 (228)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l-----------~-----------------~~~~~l~~L~~L~l~~n~~~~ 54 (228)
++.|++.+++..+|.++++|+.|+|..|.+ | ..|..+.++++|++..|+++.
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred cccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence 456777777777777777777777777752 1 134556677788888888777
Q ss_pred CcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhccccc-------cccccccchhh
Q 041723 55 TVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEI 125 (228)
Q Consensus 55 ~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~-------~~l~~~~~~~~ 125 (228)
.-...+.++++|+.|+ +++|.+..+. .+...++|++|++++|+++..-+..+..|.++ |+++...-..|
T Consensus 284 vn~g~lfgLt~L~~L~--lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af 361 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLD--LSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF 361 (873)
T ss_pred hhcccccccchhhhhc--cchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH
Confidence 7677778899999999 9999996665 78888999999999999984444556655553 33333333456
Q ss_pred hcCCCCCEEeccCCcccccCc---cccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCC
Q 041723 126 RKLTQLHILRLAENQLEGSVP---SSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTN 202 (228)
Q Consensus 126 ~~l~~L~~L~ls~n~l~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 202 (228)
..+++|+.||++.|.+++.+. ..|.++++|+.|.+.+|++.. .-..+|.++.+|++|+|.+|.+...-+.. |..
T Consensus 362 ~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~--I~krAfsgl~~LE~LdL~~NaiaSIq~nA-Fe~ 438 (873)
T KOG4194|consen 362 VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS--IPKRAFSGLEALEHLDLGDNAIASIQPNA-FEP 438 (873)
T ss_pred HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee--cchhhhccCcccceecCCCCcceeecccc-ccc
Confidence 788899999999999886654 357789999999999999984 33457889999999999999998887777 777
Q ss_pred CCCcccccccccccccCccccccCC
Q 041723 203 LPNFTIIGSVHETLASSHIFCTTKI 227 (228)
Q Consensus 203 l~~L~~l~l~~n~~~~~~~~~~~~~ 227 (228)
+ .|.+|- +.+..+.|+|.|
T Consensus 439 m-~Lk~Lv-----~nSssflCDCql 457 (873)
T KOG4194|consen 439 M-ELKELV-----MNSSSFLCDCQL 457 (873)
T ss_pred c-hhhhhh-----hcccceEEeccH
Confidence 7 788888 888999999976
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=8.6e-21 Score=159.85 Aligned_cols=214 Identities=17% Similarity=0.160 Sum_probs=146.5
Q ss_pred CCCcCCcccccchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 1 MWHHGTRKKKIATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
+.+++|++..+....|.++++|++.++.+|. +|.......+++.|++.+|.+.....++++.++.|++|+ ++.|.
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD--LSrN~ 160 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD--LSRNL 160 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh--hhhch
Confidence 3578999999999999999999999999998 677777778899999999999988888999999999999 99999
Q ss_pred CCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhcccc-------ccccccccchhhhcCCCCCEEeccCC---------
Q 041723 78 ENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ-------LNYLTGEILVEIRKLTQLHILRLAEN--------- 139 (228)
Q Consensus 78 ~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~-------~~~l~~~~~~~~~~l~~L~~L~ls~n--------- 139 (228)
++.+| .+..-.+++.|++++|.++..-...|.++.+ .|+++..-+..|.++++|+.|++..|
T Consensus 161 is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt 240 (873)
T KOG4194|consen 161 ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT 240 (873)
T ss_pred hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh
Confidence 98887 7777788999999999887433334444333 12222111222223444444444333
Q ss_pred ---------------cccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCC
Q 041723 140 ---------------QLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLP 204 (228)
Q Consensus 140 ---------------~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 204 (228)
.+...-.+.|..+.++++|++..|+++. .-..|+.++..|++|+++.|.+...-+.. ++.++
T Consensus 241 FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~--vn~g~lfgLt~L~~L~lS~NaI~rih~d~-Wsftq 317 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA--VNEGWLFGLTSLEQLDLSYNAIQRIHIDS-WSFTQ 317 (873)
T ss_pred hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh--hhcccccccchhhhhccchhhhheeecch-hhhcc
Confidence 3332233445566666666666666654 33445566666666666666666655555 66666
Q ss_pred CcccccccccccccC
Q 041723 205 NFTIIGSVHETLASS 219 (228)
Q Consensus 205 ~L~~l~l~~n~~~~~ 219 (228)
+|++|+|++|+++..
T Consensus 318 kL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 318 KLKELDLSSNRITRL 332 (873)
T ss_pred cceeEeccccccccC
Confidence 666666666666543
No 5
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.80 E-value=1e-20 Score=152.65 Aligned_cols=215 Identities=21% Similarity=0.218 Sum_probs=171.4
Q ss_pred CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCC-ccCCCCcchhccCCcchHHHHHhhhhc
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQ-VNTASTVPYASANLSSLFSLLSLIAYC 76 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~~~l~~~ 76 (228)
.+..|.|+.+++.+|+.+.+|+.++|++|.| |++|..+..+..|-+.+ |+++....++|.++..++.|. +.-|
T Consensus 73 rLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl--lNan 150 (498)
T KOG4237|consen 73 RLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL--LNAN 150 (498)
T ss_pred EeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh--cChh
Confidence 3567899999999999999999999999984 67888888877766544 888887778888888888888 8888
Q ss_pred CCCCCc--cccCCCCCcEEEeeCCcCCCCCCC-hhhcccc----------------------------------------
Q 041723 77 KENFLP--SLGNLTKLNDLYLFGNDFSGKVPD-SLGDLLQ---------------------------------------- 113 (228)
Q Consensus 77 ~~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~---------------------------------------- 113 (228)
.+.-++ .+..++++..|.+..|.+. .+++ .+..+..
T Consensus 151 ~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~ 229 (498)
T KOG4237|consen 151 HINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY 229 (498)
T ss_pred hhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence 876665 7777788877777777665 4443 2222222
Q ss_pred ------ccc----------------------cccccc-hhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCc
Q 041723 114 ------LNY----------------------LTGEIL-VEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNN 164 (228)
Q Consensus 114 ------~~~----------------------l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (228)
.+. .++.-| ..|+++++|+.+++++|.++..-+.+|.+...+++|.+..|.
T Consensus 230 rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~ 309 (498)
T KOG4237|consen 230 RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK 309 (498)
T ss_pred HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch
Confidence 000 011222 357889999999999999997778899999999999999999
Q ss_pred cccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccCC
Q 041723 165 LSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTKI 227 (228)
Q Consensus 165 ~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~ 227 (228)
+.. .-...|.++..|+.|+|.+|+++...|.. |..+..|.++. +-.+|+-|.|+|
T Consensus 310 l~~--v~~~~f~~ls~L~tL~L~~N~it~~~~~a-F~~~~~l~~l~-----l~~Np~~CnC~l 364 (498)
T KOG4237|consen 310 LEF--VSSGMFQGLSGLKTLSLYDNQITTVAPGA-FQTLFSLSTLN-----LLSNPFNCNCRL 364 (498)
T ss_pred HHH--HHHHhhhccccceeeeecCCeeEEEeccc-ccccceeeeee-----hccCcccCccch
Confidence 985 44567899999999999999999988888 99999999999 788899999986
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=3.4e-21 Score=163.74 Aligned_cols=211 Identities=21% Similarity=0.241 Sum_probs=161.1
Q ss_pred CCCcCCcccccchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 1 MWHHGTRKKKIATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
+++++|.|.+++...+-+++.|-+|+++.|. +|+.+..+.+|+.|++++|.+...-.+.+..+++|++|. +++.+
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLh--ms~Tq 208 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLH--MSNTQ 208 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhh--ccccc
Confidence 4678999999999999999999999999997 799999999999999999987643334455566777777 88877
Q ss_pred C--CCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccccccc------cccchhhhcCCCCCEEeccCCcccccCccc
Q 041723 78 E--NFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT------GEILVEIRKLTQLHILRLAENQLEGSVPSS 148 (228)
Q Consensus 78 ~--~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~------~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 148 (228)
- ..+| .+.++.+|..+|++.|.+. .+|+.+..+.++.++. ..+-...+.+.+|++|++|.|+++ .+|..
T Consensus 209 RTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~a 286 (1255)
T KOG0444|consen 209 RTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDA 286 (1255)
T ss_pred chhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHH
Confidence 6 6777 8888889999999999887 8888887777755442 122234456677888888888887 67888
Q ss_pred cccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccccc
Q 041723 149 IFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLAS 218 (228)
Q Consensus 149 ~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~ 218 (228)
+.++++|+.|.+.+|.++- +-+|..++.+..|+++...+|.+. .+|.- ++.|++|+.|.|++|++-.
T Consensus 287 vcKL~kL~kLy~n~NkL~F-eGiPSGIGKL~~Levf~aanN~LE-lVPEg-lcRC~kL~kL~L~~NrLiT 353 (1255)
T KOG0444|consen 287 VCKLTKLTKLYANNNKLTF-EGIPSGIGKLIQLEVFHAANNKLE-LVPEG-LCRCVKLQKLKLDHNRLIT 353 (1255)
T ss_pred HhhhHHHHHHHhccCcccc-cCCccchhhhhhhHHHHhhccccc-cCchh-hhhhHHHHHhcccccceee
Confidence 8888888888887777663 256777777777777777777775 34555 7777777777777777654
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=2.8e-19 Score=152.23 Aligned_cols=214 Identities=25% Similarity=0.278 Sum_probs=153.3
Q ss_pred CCcCCccc-ccchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 2 WHHGTRKK-KIATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 2 ~~~~~~~~-~~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
.+++|..+ ...|.....+++++-|.+.... +|+.++.+++|+.|.+++|+++. +...++.++.|+.+. +..|+
T Consensus 13 DfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~--~R~N~ 89 (1255)
T KOG0444|consen 13 DFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVI--VRDNN 89 (1255)
T ss_pred cccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHh--hhccc
Confidence 46777777 6778888888889888888876 78999999999999999998875 566678889999999 99998
Q ss_pred C--CCCc-cccCCCCCcEEEeeCCcCCCCCCChhhcccc-------------------------------ccccccccch
Q 041723 78 E--NFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ-------------------------------LNYLTGEILV 123 (228)
Q Consensus 78 ~--~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~-------------------------------~~~l~~~~~~ 123 (228)
+ +.+| ++..+..|.+||++.|+++ ..|..+..-+. .|++ ..+|.
T Consensus 90 LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL-e~LPP 167 (1255)
T KOG0444|consen 90 LKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL-EMLPP 167 (1255)
T ss_pred cccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh-hhcCH
Confidence 8 7788 8888999999999998887 67766544333 1111 34555
Q ss_pred hhhcCCCCCEEeccCCccc-------------------------ccCccccccCCCCCEEEccCCccccCCCcchhhhcC
Q 041723 124 EIRKLTQLHILRLAENQLE-------------------------GSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNL 178 (228)
Q Consensus 124 ~~~~l~~L~~L~ls~n~l~-------------------------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l 178 (228)
.+..+..|++|.+++|.+. ..+|..+..+.+|..+|++.|.+. .+|.-+..+
T Consensus 168 Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp---~vPecly~l 244 (1255)
T KOG0444|consen 168 QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP---IVPECLYKL 244 (1255)
T ss_pred HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC---cchHHHhhh
Confidence 5666666666666666532 124556667777777777777776 667777777
Q ss_pred CCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccC
Q 041723 179 ESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTK 226 (228)
Q Consensus 179 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~ 226 (228)
++|+.|+|++|+++..... .....+|++|++|+|.++..| .|.|+
T Consensus 245 ~~LrrLNLS~N~iteL~~~--~~~W~~lEtLNlSrNQLt~LP-~avcK 289 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKITELNMT--EGEWENLETLNLSRNQLTVLP-DAVCK 289 (1255)
T ss_pred hhhheeccCcCceeeeecc--HHHHhhhhhhccccchhccch-HHHhh
Confidence 7777777777777654332 344556666677777666655 44444
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=4.8e-20 Score=149.29 Aligned_cols=196 Identities=23% Similarity=0.267 Sum_probs=137.3
Q ss_pred hcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCc
Q 041723 16 YGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLN 91 (228)
Q Consensus 16 ~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~ 91 (228)
+.++.-++.+...+|+ +|++++.+..++.++.++|++. .+|+.+..++.+..++ .++|.+..+| +++.+..++
T Consensus 64 l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~--~s~n~~~el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD--CSSNELKELPDSIGRLLDLE 140 (565)
T ss_pred hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh--ccccceeecCchHHHHhhhh
Confidence 4455556666666665 5666666666666666666654 3556666666666666 6666665555 666666666
Q ss_pred EEEeeCCcCCCCCCChhhcccc-----------------------cccc------ccccchhhhcCCCCCEEeccCCccc
Q 041723 92 DLYLFGNDFSGKVPDSLGDLLQ-----------------------LNYL------TGEILVEIRKLTQLHILRLAENQLE 142 (228)
Q Consensus 92 ~L~l~~n~l~~~~p~~~~~l~~-----------------------~~~l------~~~~~~~~~~l~~L~~L~ls~n~l~ 142 (228)
.++..+|++. .+|.+++++.. +.++ -+++|.+++.+.+|+.|++..|.+.
T Consensus 141 dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 141 DLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR 219 (565)
T ss_pred hhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc
Confidence 6666666665 55555544433 3332 2678888888888888888888887
Q ss_pred ccCccccccCCCCCEEEccCCccccCCCcchhhh-cCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCcc
Q 041723 143 GSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLL-NLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHI 221 (228)
Q Consensus 143 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 221 (228)
.+| .|+++..|+++++..|.+. .+|.... .+.++.+||+++|+++.. |.. ++-+.+|.+||+|+|.+++-|.
T Consensus 220 -~lP-ef~gcs~L~Elh~g~N~i~---~lpae~~~~L~~l~vLDLRdNklke~-Pde-~clLrsL~rLDlSNN~is~Lp~ 292 (565)
T KOG0472|consen 220 -FLP-EFPGCSLLKELHVGENQIE---MLPAEHLKHLNSLLVLDLRDNKLKEV-PDE-ICLLRSLERLDLSNNDISSLPY 292 (565)
T ss_pred -cCC-CCCccHHHHHHHhcccHHH---hhHHHHhcccccceeeeccccccccC-chH-HHHhhhhhhhcccCCccccCCc
Confidence 566 6888888888888888887 5676655 788899999999999865 666 7888889999999999988765
Q ss_pred c
Q 041723 222 F 222 (228)
Q Consensus 222 ~ 222 (228)
.
T Consensus 293 s 293 (565)
T KOG0472|consen 293 S 293 (565)
T ss_pred c
Confidence 4
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.72 E-value=1e-19 Score=132.26 Aligned_cols=158 Identities=28% Similarity=0.382 Sum_probs=112.6
Q ss_pred hhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCC
Q 041723 15 AYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKL 90 (228)
Q Consensus 15 ~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L 90 (228)
.+.++++++.+.+++|. +|+.+..+.+|++|++++|+++ ..|.+++.+++|+.|+ ++-|++..+| .|+.++.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~ln--vgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILN--VGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhhee--cchhhhhcCccccCCCchh
Confidence 34455677778888886 5777888888888888888775 3677788888888888 8878877777 77888888
Q ss_pred cEEEeeCCcCCC-CCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCC
Q 041723 91 NDLYLFGNDFSG-KVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTG 169 (228)
Q Consensus 91 ~~L~l~~n~l~~-~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 169 (228)
+.||+.+|++.. .+| ..|..|..|..|+++.|.+. .+|...+++.+|+.|.+.+|.+-
T Consensus 105 evldltynnl~e~~lp-----------------gnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll--- 163 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLP-----------------GNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL--- 163 (264)
T ss_pred hhhhccccccccccCC-----------------cchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh---
Confidence 888888877763 334 34455666667777777775 56666777777777777777665
Q ss_pred CcchhhhcCCCCCEEEccCCccccccC
Q 041723 170 DLNMVLLNLESLTALVLSSNKLSLLAG 196 (228)
Q Consensus 170 ~~p~~~~~l~~L~~L~L~~n~l~~~~~ 196 (228)
.+|..++.+..|+.|.+.+|+++..+|
T Consensus 164 ~lpkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 164 SLPKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred hCcHHHHHHHHHHHHhcccceeeecCh
Confidence 567777777777777777777765443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=7.8e-19 Score=142.37 Aligned_cols=206 Identities=25% Similarity=0.272 Sum_probs=151.5
Q ss_pred CCcCCcccccchhhhcccccccccccCCCC---hHHHHh-ccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS---LANLAE-KLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
+++.|++..++ .|++++.+.+++.+.|. +|++.. ++.++.+||+++|++. +.|+.+..+++|+.|+ +++|.
T Consensus 212 yL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLD--lSNN~ 286 (565)
T KOG0472|consen 212 YLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLD--LSNND 286 (565)
T ss_pred HhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhc--ccCCc
Confidence 45666666665 67777777777777776 566555 7888888888888885 4788888888888888 88888
Q ss_pred CCCCc-cccCCCCCcEEEeeCCcCCCCCCChhhc------------------cc-------------c------------
Q 041723 78 ENFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGD------------------LL-------------Q------------ 113 (228)
Q Consensus 78 ~~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~------------------l~-------------~------------ 113 (228)
++.+| .++++ .|+.|-+.+|.+. .+-..+-+ +. +
T Consensus 287 is~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~t 364 (565)
T KOG0472|consen 287 ISSLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITT 364 (565)
T ss_pred cccCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhh
Confidence 88888 88888 7888888887763 11100000 00 0
Q ss_pred -------------------------------------------------------ccccccccchhhhcCCCCCEEeccC
Q 041723 114 -------------------------------------------------------LNYLTGEILVEIRKLTQLHILRLAE 138 (228)
Q Consensus 114 -------------------------------------------------------~~~l~~~~~~~~~~l~~L~~L~ls~ 138 (228)
.+...+.+|..+..+++|..|++++
T Consensus 365 kiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N 444 (565)
T KOG0472|consen 365 KILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN 444 (565)
T ss_pred hhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc
Confidence 1111234556677888999999999
Q ss_pred CcccccCccccccCCCCCEEEccCCccccC--------------------CCc-chhhhcCCCCCEEEccCCccccccCc
Q 041723 139 NQLEGSVPSSIFELRNLRALDLSDNNLSGT--------------------GDL-NMVLLNLESLTALVLSSNKLSLLAGT 197 (228)
Q Consensus 139 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--------------------~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~ 197 (228)
|.+. .+|..++.+..|+.++++.|++... ..+ |..+.++.+|.+|+|..|.+... |.
T Consensus 445 N~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I-Pp 522 (565)
T KOG0472|consen 445 NLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQI-PP 522 (565)
T ss_pred chhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhC-Ch
Confidence 9998 6899999999999999999887642 123 23477788999999999999865 55
Q ss_pred cccCCCCCcccccccccccc
Q 041723 198 TVNTNLPNFTIIGSVHETLA 217 (228)
Q Consensus 198 ~~~~~l~~L~~l~l~~n~~~ 217 (228)
. ++++.+|++|++.+|.+.
T Consensus 523 ~-LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 523 I-LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred h-hccccceeEEEecCCccC
Confidence 5 899999999998888876
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=4.5e-19 Score=128.86 Aligned_cols=159 Identities=26% Similarity=0.296 Sum_probs=141.0
Q ss_pred HhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccc
Q 041723 36 AEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL 114 (228)
Q Consensus 36 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~ 114 (228)
+.++.+++.|.+++|.++. .|+.++.+.+|+.|+ +++|+++.+| .+.++++|++|++..|++. .+|.+|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln--~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgf------ 98 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLN--LSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGF------ 98 (264)
T ss_pred ccchhhhhhhhcccCceee-cCCcHHHhhhhhhhh--cccchhhhcChhhhhchhhhheecchhhhh-cCcccc------
Confidence 4456788899999999975 677899999999999 9999999999 9999999999999999997 667664
Q ss_pred cccccccchhhhcCCCCCEEeccCCcccc-cCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCcccc
Q 041723 115 NYLTGEILVEIRKLTQLHILRLAENQLEG-SVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSL 193 (228)
Q Consensus 115 ~~l~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~ 193 (228)
+.++.|+.||+++|.+.. .+|+.|..|..|+.|.+++|.+. .+|+.++.+.+|+.|.+.+|.+-.
T Consensus 99 -----------gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe---~lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 99 -----------GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE---ILPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred -----------CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc---cCChhhhhhcceeEEeeccCchhh
Confidence 567789999999999864 46889999999999999999998 789999999999999999999875
Q ss_pred ccCccccCCCCCcccccccccccccCc
Q 041723 194 LAGTTVNTNLPNFTIIGSVHETLASSH 220 (228)
Q Consensus 194 ~~~~~~~~~l~~L~~l~l~~n~~~~~~ 220 (228)
.|.. ++.+..|++|.+.+|+++..|
T Consensus 165 -lpke-ig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 165 -LPKE-IGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred -CcHH-HHHHHHHHHHhcccceeeecC
Confidence 4777 899999999999999998655
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.63 E-value=5.4e-17 Score=143.07 Aligned_cols=186 Identities=27% Similarity=0.381 Sum_probs=137.9
Q ss_pred ccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcEEEe
Q 041723 20 SNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLNDLYL 95 (228)
Q Consensus 20 ~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~L~l 95 (228)
.++++++++++. +|++++.+.+|+.++..+|+++ ..|..+....+|+.++ +.+|.++.+| ....++.|++|++
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~--~~~nel~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLS--AAYNELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHH--hhhhhhhhCCCcccccceeeeeee
Confidence 489999999997 7999999999999999999995 4788899999999999 9999999999 6667999999999
Q ss_pred eCCcCCCCCCChhhcccc---------------------------------ccccccccchhhhcCCCCCEEeccCCccc
Q 041723 96 FGNDFSGKVPDSLGDLLQ---------------------------------LNYLTGEILVEIRKLTQLHILRLAENQLE 142 (228)
Q Consensus 96 ~~n~l~~~~p~~~~~l~~---------------------------------~~~l~~~~~~~~~~l~~L~~L~ls~n~l~ 142 (228)
..|.+. .+|+.+..... .|++++....-+..+.+|+.|++++|++.
T Consensus 318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 999997 77764332111 44554444445678889999999999998
Q ss_pred ccCcc-ccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccc
Q 041723 143 GSVPS-SIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETL 216 (228)
Q Consensus 143 ~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~ 216 (228)
.+|. .+.++..|++|++++|+++ .+|..+-.+..|++|...+|++... | + +..++.|+.+|++.|.+
T Consensus 397 -~fpas~~~kle~LeeL~LSGNkL~---~Lp~tva~~~~L~tL~ahsN~l~~f-P-e-~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 397 -SFPASKLRKLEELEELNLSGNKLT---TLPDTVANLGRLHTLRAHSNQLLSF-P-E-LAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred -cCCHHHHhchHHhHHHhcccchhh---hhhHHHHhhhhhHHHhhcCCceeec-h-h-hhhcCcceEEecccchh
Confidence 6665 4678899999999999998 4555554444444444444444432 2 2 34444444444444443
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.52 E-value=5.1e-16 Score=125.79 Aligned_cols=195 Identities=26% Similarity=0.337 Sum_probs=150.3
Q ss_pred cccccccCCCC---hH-HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhh-cCCCCCc--cccCCCCCcEE
Q 041723 21 NAMKTLLQSPS---LA-NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAY-CKENFLP--SLGNLTKLNDL 93 (228)
Q Consensus 21 ~l~~l~l~~~~---l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~-~~~~~~p--~~~~l~~L~~L 93 (228)
..+.++|..|. +| .+|..+.+|++||+++|.++..-|++|.++..+.+|- +.+ |+|..+| .|.++..++-|
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lv--lyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLV--LYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHH--hhcCCchhhhhhhHhhhHHHHHHH
Confidence 66888999997 44 5899999999999999999999999999999998887 666 8999999 89999999999
Q ss_pred EeeCCcCCCCCCChhhcccccccc------ccccch-hhhcCCCCCEEeccCCc--------------------------
Q 041723 94 YLFGNDFSGKVPDSLGDLLQLNYL------TGEILV-EIRKLTQLHILRLAENQ-------------------------- 140 (228)
Q Consensus 94 ~l~~n~l~~~~p~~~~~l~~~~~l------~~~~~~-~~~~l~~L~~L~ls~n~-------------------------- 140 (228)
.+.-|.+.-...+.+..++..+-+ ...+++ .++.+..++++.+..|.
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 999999873344556666664222 112222 23333333333333332
Q ss_pred -----------------------------------ccccCc-cccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEE
Q 041723 141 -----------------------------------LEGSVP-SSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTAL 184 (228)
Q Consensus 141 -----------------------------------l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L 184 (228)
..+..| ..|.++++|+.+++++|.+++ .-+.+|.+...++.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~--i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR--IEDGAFEGAAELQEL 303 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch--hhhhhhcchhhhhhh
Confidence 001112 247899999999999999996 567899999999999
Q ss_pred EccCCccccccCccccCCCCCcccccccccccccCc
Q 041723 185 VLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSH 220 (228)
Q Consensus 185 ~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 220 (228)
.|..|++....... |.++..|++|+|++|+|+...
T Consensus 304 ~L~~N~l~~v~~~~-f~~ls~L~tL~L~~N~it~~~ 338 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGM-FQGLSGLKTLSLYDNQITTVA 338 (498)
T ss_pred hcCcchHHHHHHHh-hhccccceeeeecCCeeEEEe
Confidence 99999998877777 999999999999999998643
No 14
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.51 E-value=7.9e-16 Score=129.72 Aligned_cols=179 Identities=27% Similarity=0.331 Sum_probs=125.0
Q ss_pred cccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcE
Q 041723 17 GTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLND 92 (228)
Q Consensus 17 ~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~ 92 (228)
-.+.....++++.|. +|..++.+-.|+.+.+..|.+. .+|..+..+..|.+++ ++.|+++.+| .++.|+ |+.
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~--ls~NqlS~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLD--LSSNQLSHLPDGLCDLP-LKV 147 (722)
T ss_pred ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhh--hccchhhcCChhhhcCc-cee
Confidence 344555666677665 5667777777777777776664 3666777777777777 7777777777 666666 777
Q ss_pred EEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcc
Q 041723 93 LYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLN 172 (228)
Q Consensus 93 L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p 172 (228)
|.+++|+++ .+|.. ++...+|..++.+.|.+. .+|..++.+.+|+.+++..|.+. .+|
T Consensus 148 li~sNNkl~-~lp~~-----------------ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~---~lp 205 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEE-----------------IGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE---DLP 205 (722)
T ss_pred EEEecCccc-cCCcc-----------------cccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh---hCC
Confidence 777777776 55554 445566777777777777 66777777777777777777776 566
Q ss_pred hhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccc-cc
Q 041723 173 MVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF-CT 224 (228)
Q Consensus 173 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~ 224 (228)
+.+.. -.|..||+++|+++.. |-. |.++..|++|.|.+|.+.+.|.. |+
T Consensus 206 ~El~~-LpLi~lDfScNkis~i-Pv~-fr~m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 206 EELCS-LPLIRLDFSCNKISYL-PVD-FRKMRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred HHHhC-CceeeeecccCceeec-chh-hhhhhhheeeeeccCCCCCChHHHHh
Confidence 66663 3477777777777754 555 67777777777777777776655 44
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=3.4e-14 Score=127.25 Aligned_cols=158 Identities=25% Similarity=0.283 Sum_probs=105.4
Q ss_pred CCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhcccc----cc
Q 041723 40 ANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ----LN 115 (228)
Q Consensus 40 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~----~~ 115 (228)
++|++|++++|.+.+ +|.. ..+|+.|+ +++|.+..+|.+. .+|+.|++++|+++ .+|.....+.. .|
T Consensus 302 ~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~--Ls~N~L~~LP~lp--~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N 372 (788)
T PRK15387 302 PGLQELSVSDNQLAS-LPAL---PSELCKLW--AYNNQLTSLPTLP--SGLQELSVSDNQLA-SLPTLPSELYKLWAYNN 372 (788)
T ss_pred cccceeECCCCcccc-CCCC---cccccccc--cccCccccccccc--cccceEecCCCccC-CCCCCCcccceehhhcc
Confidence 345555555555543 2221 12355555 6666665555221 46889999999988 56654433333 23
Q ss_pred ccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCcccccc
Q 041723 116 YLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLA 195 (228)
Q Consensus 116 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 195 (228)
.+. .+|.. ..+|+.|++++|.+. .+|.. +.+|+.|++++|.++ .+|... .+|+.|++++|+++. +
T Consensus 373 ~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls---sIP~l~---~~L~~L~Ls~NqLt~-L 437 (788)
T PRK15387 373 RLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT---SLPMLP---SGLLSLSVYRNQLTR-L 437 (788)
T ss_pred ccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC---CCCcch---hhhhhhhhccCcccc-c
Confidence 333 34432 357899999999998 46653 467999999999998 466532 467889999999985 5
Q ss_pred CccccCCCCCcccccccccccccCccc
Q 041723 196 GTTVNTNLPNFTIIGSVHETLASSHIF 222 (228)
Q Consensus 196 ~~~~~~~l~~L~~l~l~~n~~~~~~~~ 222 (228)
|.. ++++++|+.+++++|++++....
T Consensus 438 P~s-l~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 438 PES-LIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ChH-HhhccCCCeEECCCCCCCchHHH
Confidence 777 88999999999999999865443
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=2.8e-14 Score=128.13 Aligned_cols=188 Identities=23% Similarity=0.286 Sum_probs=105.3
Q ss_pred CcCCcccccchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCC
Q 041723 3 HHGTRKKKIATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKEN 79 (228)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~ 79 (228)
+++|+++.++.... .+|++|++++|. +|..+. ..|+.|++++|.+.. +|..+. .+|+.|+ +++|++.
T Consensus 206 Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~--Ls~N~L~ 275 (754)
T PRK15370 206 LDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITE-LPERLP--SALQSLD--LFHNKIS 275 (754)
T ss_pred ecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCccCc-CChhHh--CCCCEEE--CcCCccC
Confidence 34555555543322 256666666665 344333 356666666666653 444332 3567777 7777776
Q ss_pred CCc-cccCCCCCcEEEeeCCcCCCCCCChhhc-ccc----ccccccccchhhhcCCCCCEEeccCCcccccCccccccCC
Q 041723 80 FLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGD-LLQ----LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELR 153 (228)
Q Consensus 80 ~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~-l~~----~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~ 153 (228)
.+| .+. .+|+.|++++|.++ .+|..+.. +.. .|.+. .+|..+ .++|+.|++++|.++ .+|..+. +
T Consensus 276 ~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~ 346 (754)
T PRK15370 276 CLPENLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALT-SLPASLP--P 346 (754)
T ss_pred ccccccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcCCccc-cCCccc--cccceeccccCCccc-cCChhhc--C
Confidence 666 443 46777788777776 45543221 111 22332 233322 246777777777776 4565442 5
Q ss_pred CCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccccc
Q 041723 154 NLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLAS 218 (228)
Q Consensus 154 ~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~ 218 (228)
+|+.|++++|.++ .+|..+. +.|++|++++|.++..++ . +. ..|+.|++++|+++.
T Consensus 347 sL~~L~Ls~N~L~---~LP~~lp--~~L~~LdLs~N~Lt~LP~-~-l~--~sL~~LdLs~N~L~~ 402 (754)
T PRK15370 347 ELQVLDVSKNQIT---VLPETLP--PTITTLDVSRNALTNLPE-N-LP--AALQIMQASRNNLVR 402 (754)
T ss_pred cccEEECCCCCCC---cCChhhc--CCcCEEECCCCcCCCCCH-h-HH--HHHHHHhhccCCccc
Confidence 7777777777776 4555442 467777777777765432 2 21 246666666666654
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.51 E-value=1.3e-15 Score=124.96 Aligned_cols=203 Identities=19% Similarity=0.132 Sum_probs=119.4
Q ss_pred hcccccccccccCCCCh----------HHHHhccCCCCeeecCCccCCCCcchhccCCcc---hHHHHHhhhhcCCCC--
Q 041723 16 YGTASNAMKTLLQSPSL----------ANLAEKLANLKVLHLGQVNTASTVPYASANLSS---LFSLLSLIAYCKENF-- 80 (228)
Q Consensus 16 ~~~l~~l~~l~l~~~~l----------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~---L~~L~~~l~~~~~~~-- 80 (228)
+...+++++++++++.+ +..+.++.+|++|++++|.+....+..+..+.+ |++|+ +++|.++.
T Consensus 47 l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~--ls~~~~~~~~ 124 (319)
T cd00116 47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELK--LNNNGLGDRG 124 (319)
T ss_pred HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEE--eeCCccchHH
Confidence 33444566666665532 234555667777777776665544444444444 66666 66666631
Q ss_pred ---Cc-cccCC-CCCcEEEeeCCcCCCCCCC----hhhccccc-------ccccc----ccchhhhcCCCCCEEeccCCc
Q 041723 81 ---LP-SLGNL-TKLNDLYLFGNDFSGKVPD----SLGDLLQL-------NYLTG----EILVEIRKLTQLHILRLAENQ 140 (228)
Q Consensus 81 ---~p-~~~~l-~~L~~L~l~~n~l~~~~p~----~~~~l~~~-------~~l~~----~~~~~~~~l~~L~~L~ls~n~ 140 (228)
+. .+..+ ++|+.|++++|.+++.... .+..+... +.+.+ .++..+...++|++|++++|.
T Consensus 125 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 125 LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred HHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 11 33444 6667777777766532111 12111111 11221 223345566789999999998
Q ss_pred ccccC----ccccccCCCCCEEEccCCccccCCCcchhh-hc----CCCCCEEEccCCccccc----cCccccCCCCCcc
Q 041723 141 LEGSV----PSSIFELRNLRALDLSDNNLSGTGDLNMVL-LN----LESLTALVLSSNKLSLL----AGTTVNTNLPNFT 207 (228)
Q Consensus 141 l~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~-~~----l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~ 207 (228)
+.+.. ...+..+++|+.|++++|.+++ .....+ .. ...|+++++++|.+++. .... +..+++|+
T Consensus 205 i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~--~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~~L~ 281 (319)
T cd00116 205 LTDEGASALAETLASLKSLEVLNLGDNNLTD--AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV-LAEKESLL 281 (319)
T ss_pred cChHHHHHHHHHhcccCCCCEEecCCCcCch--HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH-HhcCCCcc
Confidence 76432 3345677889999999998875 222222 12 36899999999988632 2223 45668899
Q ss_pred cccccccccccCcccc
Q 041723 208 IIGSVHETLASSHIFC 223 (228)
Q Consensus 208 ~l~l~~n~~~~~~~~~ 223 (228)
++++++|.+++.+..+
T Consensus 282 ~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 282 ELDLRGNKFGEEGAQL 297 (319)
T ss_pred EEECCCCCCcHHHHHH
Confidence 9999999998775443
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.50 E-value=9.1e-14 Score=131.40 Aligned_cols=93 Identities=22% Similarity=0.283 Sum_probs=55.7
Q ss_pred CcCCcccccchhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723 3 HHGTRKKKIATAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE 78 (228)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~ 78 (228)
+.+++++.+. ..+..+++|+.++++++. +| .+..+++|+.|++++|.....+|..+..+++|+.|+ +++|..
T Consensus 618 L~~s~l~~L~-~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~--L~~c~~ 693 (1153)
T PLN03210 618 MQGSKLEKLW-DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD--MSRCEN 693 (1153)
T ss_pred CcCccccccc-cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe--CCCCCC
Confidence 3444444442 234566777777776653 33 355667777777777655556666677777777777 776643
Q ss_pred -CCCccccCCCCCcEEEeeCCc
Q 041723 79 -NFLPSLGNLTKLNDLYLFGND 99 (228)
Q Consensus 79 -~~~p~~~~l~~L~~L~l~~n~ 99 (228)
..+|...++++|+.|++++|.
T Consensus 694 L~~Lp~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 694 LEILPTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred cCccCCcCCCCCCCEEeCCCCC
Confidence 666622255666666666554
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.47 E-value=8.2e-15 Score=129.52 Aligned_cols=177 Identities=27% Similarity=0.300 Sum_probs=122.0
Q ss_pred hhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhcc-------------------------CCcc
Q 041723 14 AAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASA-------------------------NLSS 65 (228)
Q Consensus 14 ~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-------------------------~l~~ 65 (228)
..+...++++++....|+ +|+....++.|+.||+..|.+....+..+. .+..
T Consensus 281 ~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~ 360 (1081)
T KOG0618|consen 281 LRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAA 360 (1081)
T ss_pred HHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHH
Confidence 334444556666666665 455666677888888888776542221111 1245
Q ss_pred hHHHHHhhhhcCC--CCCccccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccc
Q 041723 66 LFSLLSLIAYCKE--NFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEG 143 (228)
Q Consensus 66 L~~L~~~l~~~~~--~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~ 143 (228)
|+.|+ +.+|.+ ..+|.+.++..|+.|++++|++. .+|+. .+.+++.|++|++|||.++
T Consensus 361 Lq~Ly--lanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas----------------~~~kle~LeeL~LSGNkL~- 420 (1081)
T KOG0618|consen 361 LQELY--LANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPAS----------------KLRKLEELEELNLSGNKLT- 420 (1081)
T ss_pred HHHHH--HhcCcccccchhhhccccceeeeeecccccc-cCCHH----------------HHhchHHhHHHhcccchhh-
Confidence 77777 777777 56666777777888888888776 56644 3567788888888888888
Q ss_pred cCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccc
Q 041723 144 SVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHET 215 (228)
Q Consensus 144 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~ 215 (228)
.+|.....+..|+.|....|.+. .+| .+..++.|+.+|++.|.++...... ..--++|++||+++|.
T Consensus 421 ~Lp~tva~~~~L~tL~ahsN~l~---~fP-e~~~l~qL~~lDlS~N~L~~~~l~~-~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 421 TLPDTVANLGRLHTLRAHSNQLL---SFP-ELAQLPQLKVLDLSCNNLSEVTLPE-ALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhHHHHhhhhhHHHhhcCCcee---ech-hhhhcCcceEEecccchhhhhhhhh-hCCCcccceeeccCCc
Confidence 67888888888888888888887 566 5777888888888888887643322 2222678888888877
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.46 E-value=6.1e-15 Score=120.98 Aligned_cols=199 Identities=21% Similarity=0.237 Sum_probs=131.2
Q ss_pred hhhcccccccccccCCCCh----HHHHhccCC---CCeeecCCccCCCC----cchhccCC-cchHHHHHhhhhcCCC--
Q 041723 14 AAYGTASNAMKTLLQSPSL----ANLAEKLAN---LKVLHLGQVNTAST----VPYASANL-SSLFSLLSLIAYCKEN-- 79 (228)
Q Consensus 14 ~~~~~l~~l~~l~l~~~~l----~~~~~~l~~---L~~L~l~~n~~~~~----~~~~~~~l-~~L~~L~~~l~~~~~~-- 79 (228)
..++.++++++++++++.+ +..+..+.. |++|++++|.+.+. +...+..+ ++|+.|+ +++|.+.
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~--L~~n~l~~~ 152 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV--LGRNRLEGA 152 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEE--cCCCcCCch
Confidence 4566677888888888873 344555554 88888888877632 33455666 7888888 8888874
Q ss_pred ---CCc-cccCCCCCcEEEeeCCcCCCC----CCChhhcccccc-------ccc----cccchhhhcCCCCCEEeccCCc
Q 041723 80 ---FLP-SLGNLTKLNDLYLFGNDFSGK----VPDSLGDLLQLN-------YLT----GEILVEIRKLTQLHILRLAENQ 140 (228)
Q Consensus 80 ---~~p-~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~~~-------~l~----~~~~~~~~~l~~L~~L~ls~n~ 140 (228)
.++ .+..+++|+.|++++|.+++. ++..+...+.+. .+. ..++..+..+++|++|++++|.
T Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 153 SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 223 455667888888888887742 122222112222 222 1233455678899999999999
Q ss_pred ccccCccccc-----cCCCCCEEEccCCcccc--CCCcchhhhcCCCCCEEEccCCccccc----cCccccCCC-CCccc
Q 041723 141 LEGSVPSSIF-----ELRNLRALDLSDNNLSG--TGDLNMVLLNLESLTALVLSSNKLSLL----AGTTVNTNL-PNFTI 208 (228)
Q Consensus 141 l~~~~~~~~~-----~l~~L~~L~l~~n~~~~--~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l-~~L~~ 208 (228)
+.+.....+. ..+.|+.+++++|.+++ ...+...+..++.|+.+++++|.++.. .+.. +... +.+++
T Consensus 233 l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~-~~~~~~~~~~ 311 (319)
T cd00116 233 LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES-LLEPGNELES 311 (319)
T ss_pred CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH-HhhcCCchhh
Confidence 8753332222 24799999999999873 123445566778999999999999865 3333 3334 77888
Q ss_pred ccccccc
Q 041723 209 IGSVHET 215 (228)
Q Consensus 209 l~l~~n~ 215 (228)
+++.+|.
T Consensus 312 ~~~~~~~ 318 (319)
T cd00116 312 LWVKDDS 318 (319)
T ss_pred cccCCCC
Confidence 8865553
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.45 E-value=4.3e-13 Score=126.86 Aligned_cols=188 Identities=21% Similarity=0.279 Sum_probs=117.8
Q ss_pred hhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC-CCCccccCCCC
Q 041723 15 AYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE-NFLPSLGNLTK 89 (228)
Q Consensus 15 ~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~-~~~p~~~~l~~ 89 (228)
.++.+++|+.|++++|. +|..+..+++|+.|++++|.....+|..+ .+++|+.|+ +++|.. ..+|.+ ..+
T Consensus 652 ~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~--Lsgc~~L~~~p~~--~~n 726 (1153)
T PLN03210 652 DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN--LSGCSRLKSFPDI--STN 726 (1153)
T ss_pred ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe--CCCCCCccccccc--cCC
Confidence 47788899999999875 78899999999999999986556666654 678888888 888765 555522 245
Q ss_pred CcEEEeeCCcCCCCCCChh--hccc----------------------------cc-------cccccccchhhhcCCCCC
Q 041723 90 LNDLYLFGNDFSGKVPDSL--GDLL----------------------------QL-------NYLTGEILVEIRKLTQLH 132 (228)
Q Consensus 90 L~~L~l~~n~l~~~~p~~~--~~l~----------------------------~~-------~~l~~~~~~~~~~l~~L~ 132 (228)
|+.|++++|.+. .+|..+ .++. .+ +...+.+|..++.+++|+
T Consensus 727 L~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~ 805 (1153)
T PLN03210 727 ISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLE 805 (1153)
T ss_pred cCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCC
Confidence 677777777765 455432 0110 00 111234677777888888
Q ss_pred EEeccCCcccccCccccccCCCCCEEEcc---------------------CCccccCCCcchhhhcCCCCCEEEccCC-c
Q 041723 133 ILRLAENQLEGSVPSSIFELRNLRALDLS---------------------DNNLSGTGDLNMVLLNLESLTALVLSSN-K 190 (228)
Q Consensus 133 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~---------------------~n~~~~~~~~p~~~~~l~~L~~L~L~~n-~ 190 (228)
.|++++|...+.+|..+ .+++|+.|+++ +|.++ .+|.++..+++|+.|++++| .
T Consensus 806 ~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~---~iP~si~~l~~L~~L~L~~C~~ 881 (1153)
T PLN03210 806 HLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE---EVPWWIEKFSNLSFLDMNGCNN 881 (1153)
T ss_pred EEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc---cChHHHhcCCCCCEEECCCCCC
Confidence 88888775433555433 34455555554 44444 45666666667777777653 3
Q ss_pred cccccCccccCCCCCccccccccc
Q 041723 191 LSLLAGTTVNTNLPNFTIIGSVHE 214 (228)
Q Consensus 191 l~~~~~~~~~~~l~~L~~l~l~~n 214 (228)
+.. ++.. ...++.|+.++++++
T Consensus 882 L~~-l~~~-~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 882 LQR-VSLN-ISKLKHLETVDFSDC 903 (1153)
T ss_pred cCc-cCcc-cccccCCCeeecCCC
Confidence 333 3333 445555555555443
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.42 E-value=2.7e-13 Score=121.81 Aligned_cols=191 Identities=21% Similarity=0.260 Sum_probs=121.8
Q ss_pred CCcCCcccccchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE 78 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~ 78 (228)
++++|.++.++. .+. .+|+.+++++|. +|..+. ..|+.|++++|++.. +|..+. ++|+.|+ +++|.+
T Consensus 226 ~Ls~N~LtsLP~-~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~--Ls~N~L 295 (754)
T PRK15370 226 YANSNQLTSIPA-TLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLS--VYDNSI 295 (754)
T ss_pred ECCCCccccCCh-hhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEE--CCCCcc
Confidence 455666666543 232 267777787776 444443 467777777777764 454332 3677777 777777
Q ss_pred CCCc-cccCCCCCcEEEeeCCcCCCCCCChhh-cccc----ccccccccchhhhcCCCCCEEeccCCcccccCccccccC
Q 041723 79 NFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLG-DLLQ----LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFEL 152 (228)
Q Consensus 79 ~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~----~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l 152 (228)
..+| .+. ++|+.|++++|.++ .+|..+. .|.. .+.+. .+|..+. ++|+.|++++|.+. .+|..+ .
T Consensus 296 t~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p 366 (754)
T PRK15370 296 RTLPAHLP--SGITHLNVQSNSLT-ALPETLPPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL--P 366 (754)
T ss_pred ccCcccch--hhHHHHHhcCCccc-cCCccccccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh--c
Confidence 6666 332 35666777777666 3443221 1111 12222 2444332 68999999999998 577655 3
Q ss_pred CCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCcc---ccCCCCCcccccccccccc
Q 041723 153 RNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTT---VNTNLPNFTIIGSVHETLA 217 (228)
Q Consensus 153 ~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~l~l~~n~~~ 217 (228)
++|+.|++++|.++ .+|+.+. ..|+.|++++|++... |.. ....++.+..+++.+|.++
T Consensus 367 ~~L~~LdLs~N~Lt---~LP~~l~--~sL~~LdLs~N~L~~L-P~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 367 PTITTLDVSRNALT---NLPENLP--AALQIMQASRNNLVRL-PESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCcCEEECCCCcCC---CCCHhHH--HHHHHHhhccCCcccC-chhHHHHhhcCCCccEEEeeCCCcc
Confidence 68999999999988 5676654 3688899999999854 332 1445688889998888875
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.37 E-value=1.1e-12 Score=117.74 Aligned_cols=146 Identities=21% Similarity=0.221 Sum_probs=76.3
Q ss_pred CcCCcccccchhhhcccccccccccCCCChHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHH------------
Q 041723 3 HHGTRKKKIATAAYGTASNAMKTLLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLL------------ 70 (228)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~------------ 70 (228)
++++.++.++. .+. .+++.|++.+|.+.......++|++|++++|.++.. |.. .++|+.|+
T Consensus 208 Ls~~~LtsLP~-~l~--~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~Ls~N~L~~Lp~l 280 (788)
T PRK15387 208 VGESGLTTLPD-CLP--AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSL-PVL---PPGLLELSIFSNPLTHLPAL 280 (788)
T ss_pred cCCCCCCcCCc-chh--cCCCEEEccCCcCCCCCCCCCCCcEEEecCCccCcc-cCc---ccccceeeccCCchhhhhhc
Confidence 45556665543 333 267778888777433222356788888888877643 322 23344444
Q ss_pred ------HhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhcccc----ccccccccchhhhcCCCCCEEeccCCc
Q 041723 71 ------SLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ----LNYLTGEILVEIRKLTQLHILRLAENQ 140 (228)
Q Consensus 71 ------~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~----~~~l~~~~~~~~~~l~~L~~L~ls~n~ 140 (228)
+.+++|++..+|. ..++|+.|++++|.++ .+|.....+.. .|.+. .+|. ...+|+.|++++|.
T Consensus 281 p~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~-~Lp~lp~~L~~L~Ls~N~L~-~LP~---lp~~Lq~LdLS~N~ 353 (788)
T PRK15387 281 PSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLT-SLPT---LPSGLQELSVSDNQ 353 (788)
T ss_pred hhhcCEEECcCCccccccc--cccccceeECCCCccc-cCCCCcccccccccccCccc-cccc---cccccceEecCCCc
Confidence 0045555544442 1356788888888777 44443222222 12222 2332 11367888888888
Q ss_pred ccccCccccccCCCCCEEEccCCccc
Q 041723 141 LEGSVPSSIFELRNLRALDLSDNNLS 166 (228)
Q Consensus 141 l~~~~~~~~~~l~~L~~L~l~~n~~~ 166 (228)
++ .+|.. ..+|+.|++++|.++
T Consensus 354 Ls-~LP~l---p~~L~~L~Ls~N~L~ 375 (788)
T PRK15387 354 LA-SLPTL---PSELYKLWAYNNRLT 375 (788)
T ss_pred cC-CCCCC---Ccccceehhhccccc
Confidence 77 45532 233444444444444
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.27 E-value=1.9e-13 Score=115.57 Aligned_cols=187 Identities=26% Similarity=0.274 Sum_probs=153.8
Q ss_pred cchhhhcccccccccccCCCChHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCC
Q 041723 11 IATAAYGTASNAMKTLLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTK 89 (228)
Q Consensus 11 ~~~~~~~~l~~l~~l~l~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~ 89 (228)
.+.+.+.+--.|.-..++..+.+.+-..+..-...|++.|++. ++|..++.+-.|+.+. ++.|.+..+| .++.+..
T Consensus 46 leeA~~sg~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~li--Ly~n~~r~ip~~i~~L~~ 122 (722)
T KOG0532|consen 46 LEEAEYSGRLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLI--LYHNCIRTIPEAICNLEA 122 (722)
T ss_pred HHHHhhhcccccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHH--HHhccceecchhhhhhhH
Confidence 3444555544555555555555555577888888999999985 5788888889999999 9999998999 9999999
Q ss_pred CcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCC
Q 041723 90 LNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTG 169 (228)
Q Consensus 90 L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 169 (228)
|++++++.|++. .+|..+..+ + |+.+-+++|.++ .+|..++...+|..+|.+.|.+.
T Consensus 123 lt~l~ls~NqlS-~lp~~lC~l-----------------p-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~--- 179 (722)
T KOG0532|consen 123 LTFLDLSSNQLS-HLPDGLCDL-----------------P-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ--- 179 (722)
T ss_pred HHHhhhccchhh-cCChhhhcC-----------------c-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh---
Confidence 999999999998 778765433 3 889999999998 78999999999999999999998
Q ss_pred CcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccCC
Q 041723 170 DLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTKI 227 (228)
Q Consensus 170 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~ 227 (228)
.+|..++++.+|+.+.+..|.+... |.+ ++.++ |..||+|.|++...| .|.++|
T Consensus 180 slpsql~~l~slr~l~vrRn~l~~l-p~E-l~~Lp-Li~lDfScNkis~iP-v~fr~m 233 (722)
T KOG0532|consen 180 SLPSQLGYLTSLRDLNVRRNHLEDL-PEE-LCSLP-LIRLDFSCNKISYLP-VDFRKM 233 (722)
T ss_pred hchHHhhhHHHHHHHHHhhhhhhhC-CHH-HhCCc-eeeeecccCceeecc-hhhhhh
Confidence 6899999999999999999999866 445 56555 999999999999988 566554
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.27 E-value=4.7e-12 Score=94.51 Aligned_cols=125 Identities=28% Similarity=0.355 Sum_probs=44.4
Q ss_pred CcchHHHHHhhhhcCCCCCcccc-CCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcc
Q 041723 63 LSSLFSLLSLIAYCKENFLPSLG-NLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQL 141 (228)
Q Consensus 63 l~~L~~L~~~l~~~~~~~~p~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l 141 (228)
..+++.|+ +++|.+..+..++ .+.+|+.|++++|.++ .++ .+..++.|+.|++++|.+
T Consensus 18 ~~~~~~L~--L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~-~l~------------------~l~~L~~L~~L~L~~N~I 76 (175)
T PF14580_consen 18 PVKLRELN--LRGNQISTIENLGATLDKLEVLDLSNNQIT-KLE------------------GLPGLPRLKTLDLSNNRI 76 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T------------------T----TT--EEE--SS--
T ss_pred cccccccc--ccccccccccchhhhhcCCCEEECCCCCCc-ccc------------------CccChhhhhhcccCCCCC
Confidence 34567777 7777776666444 4677777888887776 332 234567777888888887
Q ss_pred cccCcccc-ccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCc--cccCCCCCccccc
Q 041723 142 EGSVPSSI-FELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGT--TVNTNLPNFTIIG 210 (228)
Q Consensus 142 ~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~l~~L~~l~ 210 (228)
+ .+...+ ..+++|+.|++++|.+.++..+ ..+..+++|+.|++.+|+++...-- .++..+|+|+.||
T Consensus 77 ~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 77 S-SISEGLDKNLPNLQELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp --S-CHHHHHH-TT--EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred C-ccccchHHhCCcCCEEECcCCcCCChHHh-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 7 344333 3577788888888877765444 3466777788888888887654210 1255677777777
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.20 E-value=1.1e-11 Score=104.96 Aligned_cols=172 Identities=33% Similarity=0.425 Sum_probs=94.1
Q ss_pred ccccccccccCCCC---hHHHHhccC-CCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcE
Q 041723 18 TASNAMKTLLQSPS---LANLAEKLA-NLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLND 92 (228)
Q Consensus 18 ~l~~l~~l~l~~~~---l~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~ 92 (228)
.++.+..+++.++. +|+....+. +|++|++++|.+.. +|..+..+++|+.|+ ++.|++..+| ..+..+.|+.
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~--l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLD--LSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhh-hhhhhhccccccccc--cCCchhhhhhhhhhhhhhhhh
Confidence 33455555555554 444555553 66666666665543 334455566666666 6666665555 3335566666
Q ss_pred EEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcc
Q 041723 93 LYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLN 172 (228)
Q Consensus 93 L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p 172 (228)
|++++|.+. .+|.. +.....|+.+.+++|.+. ..+..+..+.++..+.+.+|.+. .++
T Consensus 191 L~ls~N~i~-~l~~~-----------------~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~---~~~ 248 (394)
T COG4886 191 LDLSGNKIS-DLPPE-----------------IELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE---DLP 248 (394)
T ss_pred eeccCCccc-cCchh-----------------hhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee---ecc
Confidence 666666665 44432 223344666666666433 34444555566666666666554 234
Q ss_pred hhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccc
Q 041723 173 MVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLA 217 (228)
Q Consensus 173 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~ 217 (228)
..+..+..++.+++++|+++.... +....+++.+++++|.+.
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred chhccccccceecccccccccccc---ccccCccCEEeccCcccc
Confidence 555556666666666666655433 445666666666665554
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=4.1e-11 Score=89.42 Aligned_cols=122 Identities=29% Similarity=0.420 Sum_probs=43.7
Q ss_pred hhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhh-cCCCCCEEeccCCcccccCcccccc
Q 041723 73 IAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIR-KLTQLHILRLAENQLEGSVPSSIFE 151 (228)
Q Consensus 73 l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~-~l~~L~~L~ls~n~l~~~~~~~~~~ 151 (228)
+..+.+...+.+.+..++++|++.+|.++ .+. . ++ .+.+|+.|++++|.++ .++ .+..
T Consensus 4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~-~Ie-~-----------------L~~~l~~L~~L~Ls~N~I~-~l~-~l~~ 62 (175)
T PF14580_consen 4 LTANMIEQIAQYNNPVKLRELNLRGNQIS-TIE-N-----------------LGATLDKLEVLDLSNNQIT-KLE-GLPG 62 (175)
T ss_dssp ----------------------------------S-------------------TT-TT--EEE-TTS--S---T-T---
T ss_pred ccccccccccccccccccccccccccccc-ccc-c-----------------hhhhhcCCCEEECCCCCCc-ccc-CccC
Confidence 33445566666667778999999999997 332 2 22 4678999999999998 454 5888
Q ss_pred CCCCCEEEccCCccccCCCcchhh-hcCCCCCEEEccCCccccccC-ccccCCCCCcccccccccccccC
Q 041723 152 LRNLRALDLSDNNLSGTGDLNMVL-LNLESLTALVLSSNKLSLLAG-TTVNTNLPNFTIIGSVHETLASS 219 (228)
Q Consensus 152 l~~L~~L~l~~n~~~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~l~l~~n~~~~~ 219 (228)
+++|+.|++++|.++ .+.+.+ ..+++|++|++++|++..... .. +..+++|++|++.+|.+...
T Consensus 63 L~~L~~L~L~~N~I~---~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~-L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 63 LPRLKTLDLSNNRIS---SISEGLDKNLPNLQELYLSNNKISDLNELEP-LSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp -TT--EEE--SS------S-CHHHHHH-TT--EEE-TTS---SCCCCGG-GGG-TT--EEE-TT-GGGGS
T ss_pred hhhhhhcccCCCCCC---ccccchHHhCCcCCEEECcCCcCCChHHhHH-HHcCCCcceeeccCCcccch
Confidence 999999999999999 455444 468999999999999986533 33 77899999999999988754
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.16 E-value=5.4e-12 Score=99.75 Aligned_cols=130 Identities=29% Similarity=0.302 Sum_probs=105.6
Q ss_pred cchHHHHHhhhhcCCCCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCccc
Q 041723 64 SSLFSLLSLIAYCKENFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLE 142 (228)
Q Consensus 64 ~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~ 142 (228)
..|+.++ +++|.+..+. ++.-.|+++.|++++|++. .+. .++.+++|++||+|+|.++
T Consensus 284 q~LtelD--LS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~------------------nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 284 QELTELD--LSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQ------------------NLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred hhhhhcc--ccccchhhhhhhhhhccceeEEecccccee-eeh------------------hhhhcccceEeecccchhH
Confidence 4688888 8888888777 7777888888999888886 222 3567889999999999998
Q ss_pred ccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccC
Q 041723 143 GSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASS 219 (228)
Q Consensus 143 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 219 (228)
...++-.++-+++.|.+++|.+.+ + ..++.+-+|..|++++|++.....-..++++|+|+++.+.+|.+...
T Consensus 343 -~~~Gwh~KLGNIKtL~La~N~iE~---L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 343 -ECVGWHLKLGNIKTLKLAQNKIET---L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred -hhhhhHhhhcCEeeeehhhhhHhh---h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 677888899999999999999863 3 44788889999999999997654322389999999999888888653
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=9.7e-12 Score=102.33 Aligned_cols=84 Identities=18% Similarity=0.107 Sum_probs=59.3
Q ss_pred hcccccccccccCCCChH-----HHHhccCCCCeeecCCccCCCC--cchhccCCcchHHHHHhhhhcCCCCCc---ccc
Q 041723 16 YGTASNAMKTLLQSPSLA-----NLAEKLANLKVLHLGQVNTAST--VPYASANLSSLFSLLSLIAYCKENFLP---SLG 85 (228)
Q Consensus 16 ~~~l~~l~~l~l~~~~l~-----~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~~~l~~~~~~~~p---~~~ 85 (228)
-.++++|+.+.+..+++. .....|++++.||++.|-+... +..-...+|+|+.|+ ++.|.+..+. .-.
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LN--ls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLN--LSSNRLSNFISSNTTL 194 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcc--cccccccCCccccchh
Confidence 345677888888887632 2456788888888888865543 335567788888888 8888883332 333
Q ss_pred CCCCCcEEEeeCCcCC
Q 041723 86 NLTKLNDLYLFGNDFS 101 (228)
Q Consensus 86 ~l~~L~~L~l~~n~l~ 101 (228)
.++.|+.|.++.|+++
T Consensus 195 ~l~~lK~L~l~~CGls 210 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLS 210 (505)
T ss_pred hhhhhheEEeccCCCC
Confidence 5778888888888886
No 30
>PLN03150 hypothetical protein; Provisional
Probab=99.10 E-value=2.7e-10 Score=101.60 Aligned_cols=94 Identities=30% Similarity=0.364 Sum_probs=79.5
Q ss_pred cccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCcc
Q 041723 119 GEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTT 198 (228)
Q Consensus 119 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 198 (228)
+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++ .+|..+..+++|+.|+|++|.+++.+|..
T Consensus 432 g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg--~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG--SIPESLGQLTSLRILNLNGNSLSGRVPAA 509 (623)
T ss_pred ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC--CCchHHhcCCCCCEEECcCCcccccCChH
Confidence 3444556788899999999999998999899999999999999999998 89999999999999999999999998887
Q ss_pred ccCC-CCCcccccccccc
Q 041723 199 VNTN-LPNFTIIGSVHET 215 (228)
Q Consensus 199 ~~~~-l~~L~~l~l~~n~ 215 (228)
+.. ..++..+++.+|.
T Consensus 510 -l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 510 -LGGRLLHRASFNFTDNA 526 (623)
T ss_pred -HhhccccCceEEecCCc
Confidence 554 3456677766654
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=5.2e-12 Score=99.83 Aligned_cols=132 Identities=26% Similarity=0.266 Sum_probs=108.6
Q ss_pred cCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhccccccccc
Q 041723 39 LANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT 118 (228)
Q Consensus 39 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~ 118 (228)
-+.|+++|+++|.++ .+..+..-.|+++.|+ +++|++..+..++.+++|+.||+++|.++ .+.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~--lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls-~~~------------- 345 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLI--LSQNRIRTVQNLAELPQLQLLDLSGNLLA-ECV------------- 345 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEe--ccccceeeehhhhhcccceEeecccchhH-hhh-------------
Confidence 357999999999886 4777888899999999 99999987777889999999999999887 222
Q ss_pred cccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccc
Q 041723 119 GEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194 (228)
Q Consensus 119 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 194 (228)
.+-.++.++++|.+++|.+. . -..++++.+|..||+++|++...++. ..+++++.|+++.|.+|++.+.
T Consensus 346 ----Gwh~KLGNIKtL~La~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~ldeV-~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 346 ----GWHLKLGNIKTLKLAQNKIE-T-LSGLRKLYSLVNLDLSSNQIEELDEV-NHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ----hhHhhhcCEeeeehhhhhHh-h-hhhhHhhhhheeccccccchhhHHHh-cccccccHHHHHhhcCCCcccc
Confidence 12346678899999999986 3 34588999999999999999854232 4578899999999999999865
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.05 E-value=1.2e-10 Score=98.57 Aligned_cols=171 Identities=32% Similarity=0.376 Sum_probs=137.2
Q ss_pred ccccCCCCh---HHHHhccCCCCeeecCCccCCCCcchhccCCc-chHHHHHhhhhcCCCCCc-cccCCCCCcEEEeeCC
Q 041723 24 KTLLQSPSL---ANLAEKLANLKVLHLGQVNTASTVPYASANLS-SLFSLLSLIAYCKENFLP-SLGNLTKLNDLYLFGN 98 (228)
Q Consensus 24 ~l~l~~~~l---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~~~l~~~~~~~~p-~~~~l~~L~~L~l~~n 98 (228)
.+....+.+ ...+..+..++.+++.+|.+.. +++....+. +|+.|+ +++|.+..+| .++.++.|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~--l~~N~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELD--LSDNKIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCccccc-Cccccccchhhccccc--ccccchhhhhhhhhccccccccccCCc
Confidence 355666654 3455566789999999988875 555566664 899999 9999998887 8888999999999999
Q ss_pred cCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcC
Q 041723 99 DFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNL 178 (228)
Q Consensus 99 ~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l 178 (228)
.++ .+|.. .+..+.|+.+++++|.+. .+|.....+..|+++.+++|... ..+..+..+
T Consensus 174 ~l~-~l~~~-----------------~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~---~~~~~~~~~ 231 (394)
T COG4886 174 DLS-DLPKL-----------------LSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII---ELLSSLSNL 231 (394)
T ss_pred hhh-hhhhh-----------------hhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce---ecchhhhhc
Confidence 998 55533 236778999999999999 67877777888999999999644 567778889
Q ss_pred CCCCEEEccCCccccccCccccCCCCCcccccccccccccCcc
Q 041723 179 ESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHI 221 (228)
Q Consensus 179 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 221 (228)
..+..+.+.+|++... +.. ++.+++++.+++++|.+++.+.
T Consensus 232 ~~l~~l~l~~n~~~~~-~~~-~~~l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 232 KNLSGLELSNNKLEDL-PES-IGNLSNLETLDLSNNQISSISS 272 (394)
T ss_pred ccccccccCCceeeec-cch-hccccccceecccccccccccc
Confidence 9999999999999754 445 7789999999999999998764
No 33
>PLN03150 hypothetical protein; Provisional
Probab=98.98 E-value=7.6e-10 Score=98.71 Aligned_cols=107 Identities=28% Similarity=0.436 Sum_probs=79.4
Q ss_pred hHHHHHhhhhcCC-CCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccc
Q 041723 66 LFSLLSLIAYCKE-NFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEG 143 (228)
Q Consensus 66 L~~L~~~l~~~~~-~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~ 143 (228)
++.|+ +++|.+ +.+| .++.+++|+.|++++|.+.|.+| ..++.+++|+.|++++|.+++
T Consensus 420 v~~L~--L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP-----------------~~~~~l~~L~~LdLs~N~lsg 480 (623)
T PLN03150 420 IDGLG--LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP-----------------PSLGSITSLEVLDLSYNSFNG 480 (623)
T ss_pred EEEEE--CCCCCccccCCHHHhCCCCCCEEECCCCcccCcCC-----------------hHHhCCCCCCEEECCCCCCCC
Confidence 44556 666666 5566 66667777777777776665555 345677888999999999988
Q ss_pred cCccccccCCCCCEEEccCCccccCCCcchhhhcC-CCCCEEEccCCcccc
Q 041723 144 SVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNL-ESLTALVLSSNKLSL 193 (228)
Q Consensus 144 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l-~~L~~L~L~~n~l~~ 193 (228)
.+|..++.+++|+.|++++|.+++ .+|..+... .++..+++.+|....
T Consensus 481 ~iP~~l~~L~~L~~L~Ls~N~l~g--~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 481 SIPESLGQLTSLRILNLNGNSLSG--RVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCchHHhcCCCCCEEECcCCcccc--cCChHHhhccccCceEEecCCcccc
Confidence 888888899999999999998887 888877653 466778888886543
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=9e-11 Score=96.73 Aligned_cols=182 Identities=21% Similarity=0.207 Sum_probs=128.7
Q ss_pred hhcccccccccccCCCChH------HHHhccCCCCeeecCCccCCCCcch-hccCCcchHHHHHhhhhcCCC--CCc-cc
Q 041723 15 AYGTASNAMKTLLQSPSLA------NLAEKLANLKVLHLGQVNTASTVPY-ASANLSSLFSLLSLIAYCKEN--FLP-SL 84 (228)
Q Consensus 15 ~~~~l~~l~~l~l~~~~l~------~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~~~l~~~~~~--~~p-~~ 84 (228)
....+++.+.|++++|-+. .....+++|+.|+++.|++..-... .-..+++|+.|. ++.|.++ .+- ..
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~--l~~CGls~k~V~~~~ 218 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLV--LNSCGLSWKDVQWIL 218 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEE--eccCCCCHHHHHHHH
Confidence 4567889999999999743 4567899999999999987643221 123568899999 9999994 333 56
Q ss_pred cCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCc--cccccCCCCCEEEccC
Q 041723 85 GNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVP--SSIFELRNLRALDLSD 162 (228)
Q Consensus 85 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~L~l~~ 162 (228)
..+|+|+.|++.+|..- ..... ...-++.|+.|++++|.+. ..+ ...+.++.|+.|+++.
T Consensus 219 ~~fPsl~~L~L~~N~~~--~~~~~---------------~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 219 LTFPSLEVLYLEANEII--LIKAT---------------STKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred HhCCcHHHhhhhccccc--ceecc---------------hhhhhhHHhhccccCCccc-ccccccccccccchhhhhccc
Confidence 67899999999999521 11111 1223456888999999886 344 4567888899999999
Q ss_pred CccccCCCcchh-----hhcCCCCCEEEccCCccccccC-ccccCCCCCccccccccccccc
Q 041723 163 NNLSGTGDLNMV-----LLNLESLTALVLSSNKLSLLAG-TTVNTNLPNFTIIGSVHETLAS 218 (228)
Q Consensus 163 n~~~~~~~~p~~-----~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~l~l~~n~~~~ 218 (228)
+.+.+. ..|+. ...+++|++|+++.|++.+... .. +..+++|..+.+..|+++.
T Consensus 281 tgi~si-~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~-l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 281 TGIASI-AEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNH-LRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cCcchh-cCCCccchhhhcccccceeeecccCccccccccch-hhccchhhhhhcccccccc
Confidence 888864 33442 3456889999999999865432 22 4556777777777777654
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.96 E-value=1.6e-10 Score=92.80 Aligned_cols=199 Identities=17% Similarity=0.153 Sum_probs=122.9
Q ss_pred hhhcccccccccccCCCC-------hH-------HHHhccCCCCeeecCCccCCCCcchhc----cCCcchHHHHHhhhh
Q 041723 14 AAYGTASNAMKTLLQSPS-------LA-------NLAEKLANLKVLHLGQVNTASTVPYAS----ANLSSLFSLLSLIAY 75 (228)
Q Consensus 14 ~~~~~l~~l~~l~l~~~~-------l~-------~~~~~l~~L~~L~l~~n~~~~~~~~~~----~~l~~L~~L~~~l~~ 75 (228)
..+.+.++|+..++++-- +| +++..+++|++|||++|.+....++.+ ..+..|++|+ +.+
T Consensus 52 ~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~--L~N 129 (382)
T KOG1909|consen 52 KVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELY--LNN 129 (382)
T ss_pred HHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHh--hhc
Confidence 445566677777776541 44 355567799999999998765544433 4567899999 999
Q ss_pred cCCCCCc---------------cccCCCCCcEEEeeCCcCCCCCCCh-----hhccccc-------ccc--cc--ccchh
Q 041723 76 CKENFLP---------------SLGNLTKLNDLYLFGNDFSGKVPDS-----LGDLLQL-------NYL--TG--EILVE 124 (228)
Q Consensus 76 ~~~~~~p---------------~~~~l~~L~~L~l~~n~l~~~~p~~-----~~~l~~~-------~~l--~~--~~~~~ 124 (228)
|.++..- ..++-+.|+++...+|++. ..+.. +...+.. |.+ .| .+...
T Consensus 130 ~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~ea 208 (382)
T KOG1909|consen 130 CGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEA 208 (382)
T ss_pred CCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHH
Confidence 9883221 3345678999999999886 33321 1111111 111 01 22344
Q ss_pred hhcCCCCCEEeccCCcccccC----ccccccCCCCCEEEccCCccccCC--Ccchhh-hcCCCCCEEEccCCcccccc--
Q 041723 125 IRKLTQLHILRLAENQLEGSV----PSSIFELRNLRALDLSDNNLSGTG--DLNMVL-LNLESLTALVLSSNKLSLLA-- 195 (228)
Q Consensus 125 ~~~l~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~~--~~p~~~-~~l~~L~~L~L~~n~l~~~~-- 195 (228)
+..+++|+.||+..|.++... ...+..+++|+.+++++|.+..-+ .+-..+ ...++|+++.+.+|-++..-
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~ 288 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL 288 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence 567778888888888775322 234566777888888888776511 111222 23567888888888776431
Q ss_pred --CccccCCCCCccccccccccc
Q 041723 196 --GTTVNTNLPNFTIIGSVHETL 216 (228)
Q Consensus 196 --~~~~~~~l~~L~~l~l~~n~~ 216 (228)
... ....+.|..|++++|++
T Consensus 289 ~la~~-~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 289 ALAAC-MAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHH-HhcchhhHHhcCCcccc
Confidence 112 34577788888888887
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.88 E-value=1.7e-09 Score=86.97 Aligned_cols=204 Identities=18% Similarity=0.205 Sum_probs=143.3
Q ss_pred hhcccccccccccCCCC--------hHHHHhccCCCCeeecCCc---cCCCCcch-------hccCCcchHHHHHhhhhc
Q 041723 15 AYGTASNAMKTLLQSPS--------LANLAEKLANLKVLHLGQV---NTASTVPY-------ASANLSSLFSLLSLIAYC 76 (228)
Q Consensus 15 ~~~~l~~l~~l~l~~~~--------l~~~~~~l~~L~~L~l~~n---~~~~~~~~-------~~~~l~~L~~L~~~l~~~ 76 (228)
.......++++++++|. +.+.+...++|++.++++- +....+|+ ++...++|++++ +++|
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld--LSDN 102 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLD--LSDN 102 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEee--cccc
Confidence 34556688999999996 6678888899999999874 33333443 344668999999 9999
Q ss_pred CC--CCCc----cccCCCCCcEEEeeCCcCCCCCCChhhc----ccc----------------ccccc----cccchhhh
Q 041723 77 KE--NFLP----SLGNLTKLNDLYLFGNDFSGKVPDSLGD----LLQ----------------LNYLT----GEILVEIR 126 (228)
Q Consensus 77 ~~--~~~p----~~~~l~~L~~L~l~~n~l~~~~p~~~~~----l~~----------------~~~l~----~~~~~~~~ 126 (228)
.+ ..++ .+.++..|++|++.+|++...--..++. +.. .|++. ..+...++
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 99 3333 5567899999999999986211111111 111 22332 12344567
Q ss_pred cCCCCCEEeccCCcccccC----ccccccCCCCCEEEccCCccccC--CCcchhhhcCCCCCEEEccCCccccccCcc--
Q 041723 127 KLTQLHILRLAENQLEGSV----PSSIFELRNLRALDLSDNNLSGT--GDLNMVLLNLESLTALVLSSNKLSLLAGTT-- 198 (228)
Q Consensus 127 ~l~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~--~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-- 198 (228)
..+.|+.+.+..|.|.... ...+..+++|+.||+.+|.++.. ..+-..+..+++|+.+++++|.++......
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 7789999999999986332 24578999999999999998841 123345667789999999999997654332
Q ss_pred --ccCCCCCcccccccccccccCc
Q 041723 199 --VNTNLPNFTIIGSVHETLASSH 220 (228)
Q Consensus 199 --~~~~l~~L~~l~l~~n~~~~~~ 220 (228)
+-...|.|+++.+.+|.++...
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da 286 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDA 286 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHH
Confidence 1245789999999999987543
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=1.4e-09 Score=67.06 Aligned_cols=59 Identities=41% Similarity=0.466 Sum_probs=27.1
Q ss_pred CCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCc
Q 041723 130 QLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNK 190 (228)
Q Consensus 130 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~ 190 (228)
+|++|++++|.++...+..|..+++|+.+++++|.++. ..+..|.++++|+++++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~--i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS--IPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE--EETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc--cCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555543222344445555555555555442 223344444445555544443
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=2.7e-09 Score=65.81 Aligned_cols=61 Identities=34% Similarity=0.437 Sum_probs=54.3
Q ss_pred CCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccc
Q 041723 153 RNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETL 216 (228)
Q Consensus 153 ~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~ 216 (228)
++|+.|++++|.++. ..+.+|.++++|+++++++|.++...+.. +.++++|+++++++|++
T Consensus 1 p~L~~L~l~~n~l~~--i~~~~f~~l~~L~~L~l~~N~l~~i~~~~-f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE--IPPDSFSNLPNLETLDLSNNNLTSIPPDA-FSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESE--ECTTTTTTGTTESEEEETSSSESEEETTT-TTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCc--cCHHHHcCCCCCCEeEccCCccCccCHHH-HcCCCCCCEEeCcCCcC
Confidence 578999999999994 33468899999999999999999888888 99999999999999875
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.74 E-value=1.4e-09 Score=92.69 Aligned_cols=83 Identities=19% Similarity=0.076 Sum_probs=57.9
Q ss_pred hhcccccccccccCCCChHH--H-HhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCc
Q 041723 15 AYGTASNAMKTLLQSPSLAN--L-AEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLN 91 (228)
Q Consensus 15 ~~~~l~~l~~l~l~~~~l~~--~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~ 91 (228)
.++.++++..+++.+|.+.. . +..+.+|++|++++|.++...+ +..++.|+.|+ +.+|.+..++.+..+..|+
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~--l~~N~i~~~~~~~~l~~L~ 165 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELN--LSGNLISDISGLESLKSLK 165 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhhe--eccCcchhccCCccchhhh
Confidence 36666777777777777432 3 6667777777777777765432 45566677777 7777777777666677777
Q ss_pred EEEeeCCcCC
Q 041723 92 DLYLFGNDFS 101 (228)
Q Consensus 92 ~L~l~~n~l~ 101 (228)
.+++++|.+.
T Consensus 166 ~l~l~~n~i~ 175 (414)
T KOG0531|consen 166 LLDLSYNRIV 175 (414)
T ss_pred cccCCcchhh
Confidence 7777777776
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.53 E-value=7.4e-09 Score=88.30 Aligned_cols=175 Identities=26% Similarity=0.324 Sum_probs=108.1
Q ss_pred ccccccccccCCCChH---HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEE
Q 041723 18 TASNAMKTLLQSPSLA---NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLY 94 (228)
Q Consensus 18 ~l~~l~~l~l~~~~l~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~ 94 (228)
.+..+..+.+..|.+. ..+..+++|..|++.+|.+... ...+..+++|++|+ +++|.++.+..+..+..|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~--ls~N~I~~i~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLD--LSFNKITKLEGLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhc-ccchhhhhcchhee--ccccccccccchhhccchhhhe
Confidence 4456666667777654 3477889999999999988763 33367789999999 9999998888777888899999
Q ss_pred eeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccc-cccCCCCCEEEccCCccccCC----
Q 041723 95 LFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSS-IFELRNLRALDLSDNNLSGTG---- 169 (228)
Q Consensus 95 l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~---- 169 (228)
+.+|.+. .+.. +..+..|+.+++++|.+.. +... ...+.+++.+.+.+|.+....
T Consensus 147 l~~N~i~-~~~~------------------~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~ 206 (414)
T KOG0531|consen 147 LSGNLIS-DISG------------------LESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNSIREIEGLDL 206 (414)
T ss_pred eccCcch-hccC------------------CccchhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCchhcccchHH
Confidence 9999987 3331 1223444555555555542 2111 234444455555554443210
Q ss_pred ---------------CcchhhhcCC--CCCEEEccCCccccccCccccCCCCCccccccccccccc
Q 041723 170 ---------------DLNMVLLNLE--SLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLAS 218 (228)
Q Consensus 170 ---------------~~p~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~ 218 (228)
.+-+ +..+. .|+.+++++|++.... .. +..+..+..++++.|++..
T Consensus 207 ~~~l~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~~-~~-~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 207 LKKLVLLSLLDNKISKLEG-LNELVMLHLRELYLSGNRISRSP-EG-LENLKNLPVLDLSSNRISN 269 (414)
T ss_pred HHHHHHhhcccccceeccC-cccchhHHHHHHhcccCcccccc-cc-ccccccccccchhhccccc
Confidence 1111 11112 2667777777776432 23 4566777777777777654
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.43 E-value=1.7e-07 Score=86.21 Aligned_cols=84 Identities=23% Similarity=0.235 Sum_probs=40.7
Q ss_pred ccchhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC-CCCc-c
Q 041723 10 KIATAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE-NFLP-S 83 (228)
Q Consensus 10 ~~~~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~-~~~p-~ 83 (228)
.+....|..++.|+.|++++|. +|+.++.+-+|++|++++..+. .+|..+.++..|.+|+ +..+.. ..+| .
T Consensus 561 ~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln--l~~~~~l~~~~~i 637 (889)
T KOG4658|consen 561 EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN--LEVTGRLESIPGI 637 (889)
T ss_pred hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec--cccccccccccch
Confidence 3333444455555555555443 4555555555555555554443 3455555555555555 544443 3333 3
Q ss_pred ccCCCCCcEEEee
Q 041723 84 LGNLTKLNDLYLF 96 (228)
Q Consensus 84 ~~~l~~L~~L~l~ 96 (228)
...+.+|++|.+.
T Consensus 638 ~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 638 LLELQSLRVLRLP 650 (889)
T ss_pred hhhcccccEEEee
Confidence 3335555555543
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.36 E-value=7.2e-09 Score=90.72 Aligned_cols=20 Identities=10% Similarity=-0.137 Sum_probs=15.1
Q ss_pred hhhhcccccccccccCCCCh
Q 041723 13 TAAYGTASNAMKTLLQSPSL 32 (228)
Q Consensus 13 ~~~~~~l~~l~~l~l~~~~l 32 (228)
+..+..+..|+.|.+.++++
T Consensus 102 pi~ifpF~sLr~LElrg~~L 121 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDL 121 (1096)
T ss_pred CceeccccceeeEEecCcch
Confidence 55666777888888888874
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.36 E-value=9.4e-09 Score=90.03 Aligned_cols=170 Identities=26% Similarity=0.248 Sum_probs=91.4
Q ss_pred HHHhccCCCCeeecCCccCCCCcchhccCC----------cchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCC
Q 041723 34 NLAEKLANLKVLHLGQVNTASTVPYASANL----------SSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGK 103 (228)
Q Consensus 34 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l----------~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~ 103 (228)
-.+..+..|++|.+.++.+... ..+.++ .+++.|.-.++.|.- .+..--.+..|.+.+.++|.+. .
T Consensus 103 i~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascgg-d~~ns~~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 103 ISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGG-DISNSPVWNKLATASFSYNRLV-L 178 (1096)
T ss_pred ceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhcc-ccccchhhhhHhhhhcchhhHH-h
Confidence 3566788999999999877531 111111 112211101222221 1110011234556666666665 4
Q ss_pred CCChhhccccc-------cccccccchhhhcCCCCCEEeccCCcccccCccc-cccCCCCCEEEccCCccccCCCcchhh
Q 041723 104 VPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSS-IFELRNLRALDLSDNNLSGTGDLNMVL 175 (228)
Q Consensus 104 ~p~~~~~l~~~-------~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~p~~~ 175 (228)
+...+.-++.. |++.. .+.+..+++|++||+++|.++ .+|.. ..++. |+.|.+++|.++. + ..+
T Consensus 179 mD~SLqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t---L-~gi 250 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT---L-RGI 250 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh---h-hhH
Confidence 44333333321 22211 125667788888888888887 55542 22333 8888888888773 3 236
Q ss_pred hcCCCCCEEEccCCccccccCccccCCCCCcccccccccc
Q 041723 176 LNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHET 215 (228)
Q Consensus 176 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~ 215 (228)
.++.+|+.||++.|-+.+-..-..+..+..|+.|.|.+|.
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 6777888888888877654322214456777778843333
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.4e-08 Score=79.17 Aligned_cols=164 Identities=20% Similarity=0.183 Sum_probs=104.0
Q ss_pred cccccccCCCCh-----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC-CCC--c-cccCCCCCc
Q 041723 21 NAMKTLLQSPSL-----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE-NFL--P-SLGNLTKLN 91 (228)
Q Consensus 21 ~l~~l~l~~~~l-----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~-~~~--p-~~~~l~~L~ 91 (228)
.+++++++...+ ...+..|++|+.|.+.++++...+...+++-.+|+.|+ ++.|.- ... . .+.++..|+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~ln--lsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLN--LSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeec--cccccccchhHHHHHHHhhhhHh
Confidence 578888887763 45678899999999999999888888899999999999 988865 333 3 778899999
Q ss_pred EEEeeCCcCCCCCCC-hhh----cccccc------ccc-cccchhhhcCCCCCEEeccCCcc-cccCccccccCCCCCEE
Q 041723 92 DLYLFGNDFSGKVPD-SLG----DLLQLN------YLT-GEILVEIRKLTQLHILRLAENQL-EGSVPSSIFELRNLRAL 158 (228)
Q Consensus 92 ~L~l~~n~l~~~~p~-~~~----~l~~~~------~l~-~~~~~~~~~l~~L~~L~ls~n~l-~~~~~~~~~~l~~L~~L 158 (228)
.|++++|.+...... .+. .++++| .+. .-+..-..+++++.+||+|.|.. +......|.+++.|+++
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 999999987632211 111 111111 110 11111124566777777776543 22222345566677777
Q ss_pred EccCCccccCCCcchh---hhcCCCCCEEEccCCc
Q 041723 159 DLSDNNLSGTGDLNMV---LLNLESLTALVLSSNK 190 (228)
Q Consensus 159 ~l~~n~~~~~~~~p~~---~~~l~~L~~L~L~~n~ 190 (228)
.++.|.. .+|.. +...+.|.+|++-++-
T Consensus 344 SlsRCY~----i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 344 SLSRCYD----IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ehhhhcC----CChHHeeeeccCcceEEEEecccc
Confidence 7776653 23332 3455667777665543
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.32 E-value=1e-07 Score=67.41 Aligned_cols=103 Identities=19% Similarity=0.145 Sum_probs=68.6
Q ss_pred ccccccccCCCC---hHHH---HhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcE
Q 041723 20 SNAMKTLLQSPS---LANL---AEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLND 92 (228)
Q Consensus 20 ~~l~~l~l~~~~---l~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~ 92 (228)
..+..++|+.++ +++. +....+|+..++++|.+....+..-...+.+++++ +++|.++.+| .+..++.|+.
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lN--l~~neisdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLN--LANNEISDVPEELAAMPALRS 104 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhh--cchhhhhhchHHHhhhHHhhh
Confidence 356677777886 4444 44555677778888887654444444556788888 8888888888 8888888888
Q ss_pred EEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCccc
Q 041723 93 LYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLE 142 (228)
Q Consensus 93 L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~ 142 (228)
++++.|.+. ..|..+ ..+.++..|+..+|.+-
T Consensus 105 lNl~~N~l~-~~p~vi-----------------~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVI-----------------APLIKLDMLDSPENARA 136 (177)
T ss_pred cccccCccc-cchHHH-----------------HHHHhHHHhcCCCCccc
Confidence 888888776 444433 33445555666566554
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.22 E-value=9.2e-08 Score=67.65 Aligned_cols=86 Identities=28% Similarity=0.361 Sum_probs=47.9
Q ss_pred CCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCcccc
Q 041723 88 TKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSG 167 (228)
Q Consensus 88 ~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 167 (228)
..|..+++++|.+. .+|+.+. .+.+.++.+++++|.++ .+|..+..|+.|+.++++.|.+.
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft----------------~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~- 113 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFT----------------IKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN- 113 (177)
T ss_pred ceEEEEecccchhh-hCCHHHh----------------hccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-
Confidence 34455566666665 4444331 23344556666666666 45555666666666666666665
Q ss_pred CCCcchhhhcCCCCCEEEccCCccccc
Q 041723 168 TGDLNMVLLNLESLTALVLSSNKLSLL 194 (228)
Q Consensus 168 ~~~~p~~~~~l~~L~~L~L~~n~l~~~ 194 (228)
..|..+-.+.++.+|+...|.....
T Consensus 114 --~~p~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 114 --AEPRVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred --cchHHHHHHHhHHHhcCCCCccccC
Confidence 4455555556666666666655543
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=3.5e-07 Score=72.68 Aligned_cols=188 Identities=18% Similarity=0.164 Sum_probs=101.7
Q ss_pred ccccccccCCCChHH------HHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC--CCCc-cccCCCCC
Q 041723 20 SNAMKTLLQSPSLAN------LAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE--NFLP-SLGNLTKL 90 (228)
Q Consensus 20 ~~l~~l~l~~~~l~~------~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~--~~~p-~~~~l~~L 90 (228)
++.+.+++..|.+.+ .+.++++|++|+++.|++...+-.....+.+|+++. +.+..+ .... .+..+|.+
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lV--LNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLV--LNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEE--EcCCCCChhhhhhhhhcchhh
Confidence 355566666665432 344566666666666655443222213444555555 555555 2222 44455555
Q ss_pred cEEEeeCCcCCCC--CCChhhcccc-cccc--c-------cccchhhhcCCCCCEEeccCCcccccC-ccccccCCCCCE
Q 041723 91 NDLYLFGNDFSGK--VPDSLGDLLQ-LNYL--T-------GEILVEIRKLTQLHILRLAENQLEGSV-PSSIFELRNLRA 157 (228)
Q Consensus 91 ~~L~l~~n~l~~~--~p~~~~~l~~-~~~l--~-------~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~ 157 (228)
+.|.++.|.+... -......... ...+ . ..+..--...+++..+-+..|.+.... -..+...+.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 5665555533210 0001100000 0000 0 000011123467777777777775332 234566777788
Q ss_pred EEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCcc-----ccCCCCCccccc
Q 041723 158 LDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTT-----VNTNLPNFTIIG 210 (228)
Q Consensus 158 L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~~l~~L~~l~ 210 (228)
|+++.+++.+|.. .+.+.+++.|+.+.+..+++.+..... +++++++++.|+
T Consensus 229 LnL~~~~idswas-vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 229 LNLGANNIDSWAS-VDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred hhhcccccccHHH-HHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 9999999987633 355788999999999999987643321 367788888876
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.20 E-value=6.7e-07 Score=82.39 Aligned_cols=95 Identities=31% Similarity=0.313 Sum_probs=75.8
Q ss_pred cccccccCCCC-----hH-HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcEE
Q 041723 21 NAMKTLLQSPS-----LA-NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLNDL 93 (228)
Q Consensus 21 ~l~~l~l~~~~-----l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~L 93 (228)
.++.|-+.++. ++ +.|..++.|++||+++|.-.+.+|..++.+-+|++|+ ++++.+..+| .++.+..|.+|
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~--L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD--LSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc--ccCCCccccchHHHHHHhhhee
Confidence 57777777763 23 3477899999999999877788999999999999999 9999999999 99999999999
Q ss_pred EeeCCcCCCCCCChhhcccccccc
Q 041723 94 YLFGNDFSGKVPDSLGDLLQLNYL 117 (228)
Q Consensus 94 ~l~~n~l~~~~p~~~~~l~~~~~l 117 (228)
++..+.-...+|.....|.+++.+
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred ccccccccccccchhhhcccccEE
Confidence 999887654455544445554433
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=4.7e-06 Score=47.52 Aligned_cols=35 Identities=40% Similarity=0.633 Sum_probs=14.6
Q ss_pred CCEEeccCCcccccCccccccCCCCCEEEccCCccc
Q 041723 131 LHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLS 166 (228)
Q Consensus 131 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 166 (228)
|+.|++++|.++ .+|..++.+++|+.|++++|.++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444444 23333444444444444444444
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.10 E-value=1.4e-06 Score=68.61 Aligned_cols=94 Identities=20% Similarity=0.177 Sum_probs=54.4
Q ss_pred hcCCCCCEEeccCCcccccCc-----cccccCCCCCEEEccCCccccC--CCcchhhhcCCCCCEEEccCCccccccCcc
Q 041723 126 RKLTQLHILRLAENQLEGSVP-----SSIFELRNLRALDLSDNNLSGT--GDLNMVLLNLESLTALVLSSNKLSLLAGTT 198 (228)
Q Consensus 126 ~~l~~L~~L~ls~n~l~~~~~-----~~~~~l~~L~~L~l~~n~~~~~--~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 198 (228)
..-..|+.+.+..|.|..... ..+..+.+|+.||+++|.++.. ..+...+..++.|+.|.+.+|.++......
T Consensus 182 ~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~ 261 (388)
T COG5238 182 ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKS 261 (388)
T ss_pred HhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHH
Confidence 334567777777777763311 1234567788888888877631 112233444566777777777776543332
Q ss_pred cc-----CCCCCcccccccccccccC
Q 041723 199 VN-----TNLPNFTIIGSVHETLASS 219 (228)
Q Consensus 199 ~~-----~~l~~L~~l~l~~n~~~~~ 219 (228)
++ ...|+|..|...+|.+...
T Consensus 262 v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 262 VLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred HHHHhhhhcCCCccccccchhhhcCc
Confidence 11 1256677777777766543
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=6.8e-06 Score=46.84 Aligned_cols=39 Identities=46% Similarity=0.606 Sum_probs=33.5
Q ss_pred CCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccc
Q 041723 153 RNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194 (228)
Q Consensus 153 ~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 194 (228)
++|++|++++|.++ .+|+.+.++++|++|++++|+++..
T Consensus 1 ~~L~~L~l~~N~i~---~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQIT---DLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-S---SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCc---ccCchHhCCCCCCEEEecCCCCCCC
Confidence 47999999999999 6888899999999999999999864
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=7e-07 Score=71.03 Aligned_cols=61 Identities=23% Similarity=0.183 Sum_probs=30.7
Q ss_pred cCCCCeeecCCccCCCC--cchhccCCcchHHHHHhhhhcCC-CCCccc-cCCCCCcEEEeeCCcCC
Q 041723 39 LANLKVLHLGQVNTAST--VPYASANLSSLFSLLSLIAYCKE-NFLPSL-GNLTKLNDLYLFGNDFS 101 (228)
Q Consensus 39 l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~~~l~~~~~-~~~p~~-~~l~~L~~L~l~~n~l~ 101 (228)
+++++++|+.+|.++.. +..-...+|+|++|+ ++.|++ +.+-.. ....+|+++-+.+..+.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LN--ls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLN--LSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS 134 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEee--ccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence 55666666666655431 223334556666666 666665 222211 23445556655555443
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=1.1e-06 Score=70.07 Aligned_cols=147 Identities=20% Similarity=0.175 Sum_probs=77.6
Q ss_pred hhcccccccccccCCCC----hHHHHhccCCCCeeecCCcc-CCCC-cchhccCCcchHHHHHhhhhcCC--CCCc-ccc
Q 041723 15 AYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVN-TAST-VPYASANLSSLFSLLSLIAYCKE--NFLP-SLG 85 (228)
Q Consensus 15 ~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~-~~~~-~~~~~~~l~~L~~L~~~l~~~~~--~~~p-~~~ 85 (228)
-+..+.+|..+++.++. +...+.+-.+|+.|+++.++ ++.. ..--+..+..|+.|+ +++|.+ ..+. .+.
T Consensus 205 iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN--lsWc~l~~~~Vtv~V~ 282 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN--LSWCFLFTEKVTVAVA 282 (419)
T ss_pred HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC--chHhhccchhhhHHHh
Confidence 34555666777777766 33455666677777776653 3221 122334555666666 666655 1122 222
Q ss_pred C-CCCCcEEEeeCCcCCCCCCChhhcc----cccccc--------ccccchhhhcCCCCCEEeccCCcccccCcc---cc
Q 041723 86 N-LTKLNDLYLFGNDFSGKVPDSLGDL----LQLNYL--------TGEILVEIRKLTQLHILRLAENQLEGSVPS---SI 149 (228)
Q Consensus 86 ~-l~~L~~L~l~~n~l~~~~p~~~~~l----~~~~~l--------~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~---~~ 149 (228)
+ -++|..|+++++.-. .....+..| ++.-.+ .......+.+++-|+++.++.|... .|. .+
T Consensus 283 hise~l~~LNlsG~rrn-l~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l 359 (419)
T KOG2120|consen 283 HISETLTQLNLSGYRRN-LQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLEL 359 (419)
T ss_pred hhchhhhhhhhhhhHhh-hhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeee
Confidence 2 133444555444311 001111111 111111 1112234667889999999988753 343 46
Q ss_pred ccCCCCCEEEccCCccc
Q 041723 150 FELRNLRALDLSDNNLS 166 (228)
Q Consensus 150 ~~l~~L~~L~l~~n~~~ 166 (228)
..+++|.+|++.++.-.
T Consensus 360 ~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 360 NSKPSLVYLDVFGCVSD 376 (419)
T ss_pred ccCcceEEEEeccccCc
Confidence 78999999999887654
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.96 E-value=1.2e-05 Score=60.54 Aligned_cols=127 Identities=21% Similarity=0.242 Sum_probs=78.6
Q ss_pred CCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhcccccccccccc
Q 041723 42 LKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEI 121 (228)
Q Consensus 42 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~ 121 (228)
=+++++.+.++... -.--..+.+...++ +++|.+..++.+..++.|.+|.+.+|+++ .+...+.
T Consensus 21 e~e~~LR~lkip~i-enlg~~~d~~d~iD--LtdNdl~~l~~lp~l~rL~tLll~nNrIt-~I~p~L~------------ 84 (233)
T KOG1644|consen 21 ERELDLRGLKIPVI-ENLGATLDQFDAID--LTDNDLRKLDNLPHLPRLHTLLLNNNRIT-RIDPDLD------------ 84 (233)
T ss_pred ccccccccccccch-hhccccccccceec--ccccchhhcccCCCccccceEEecCCcce-eeccchh------------
Confidence 45566665543211 11111234566778 88888877777778888888888888887 3433332
Q ss_pred chhhhcCCCCCEEeccCCcccccCc--cccccCCCCCEEEccCCccccCCCc-chhhhcCCCCCEEEccCC
Q 041723 122 LVEIRKLTQLHILRLAENQLEGSVP--SSIFELRNLRALDLSDNNLSGTGDL-NMVLLNLESLTALVLSSN 189 (228)
Q Consensus 122 ~~~~~~l~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~-p~~~~~l~~L~~L~L~~n 189 (228)
.-+++|+.|.+.+|++. .+- ..+..+++|++|.+-+|.++..... --.+..+++|+.||++.=
T Consensus 85 ----~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 85 ----TFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ----hhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 23467888888888876 322 2356777888888888887741111 113456677777777554
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.95 E-value=2.2e-05 Score=66.09 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=22.0
Q ss_pred cccccccccCCCChHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhc
Q 041723 19 ASNAMKTLLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYC 76 (228)
Q Consensus 19 l~~l~~l~l~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~ 76 (228)
+.++..|++++|.+.....-..+|++|++++|.-....|..+ .++|++|. +++|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~--Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLT--VCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheE--ccCc
Confidence 345555555555421111111235555555443222233222 13455555 5555
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.93 E-value=1.5e-05 Score=60.14 Aligned_cols=126 Identities=19% Similarity=0.237 Sum_probs=81.8
Q ss_pred cccccccCCCChHHH--Hhc-cCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-ccc-CCCCCcEEEe
Q 041723 21 NAMKTLLQSPSLANL--AEK-LANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLG-NLTKLNDLYL 95 (228)
Q Consensus 21 ~l~~l~l~~~~l~~~--~~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~-~l~~L~~L~l 95 (228)
.-+++++.+..+|.. ++. ..+...+|+++|.+.. .+.+..++.|.+|. ++.|.+..+. .+. .+++|+.|.+
T Consensus 20 ~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLl--l~nNrIt~I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 20 RERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLL--LNNNRITRIDPDLDTFLPNLKTLIL 95 (233)
T ss_pred cccccccccccccchhhccccccccceecccccchhh--cccCCCccccceEE--ecCCcceeeccchhhhccccceEEe
Confidence 456677777765532 222 4477888888887754 34466777888888 8888885554 443 3677888888
Q ss_pred eCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCc---cccccCCCCCEEEccCCccc
Q 041723 96 FGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVP---SSIFELRNLRALDLSDNNLS 166 (228)
Q Consensus 96 ~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~---~~~~~l~~L~~L~l~~n~~~ 166 (228)
.+|.+. .+-+- .-+..+++|+.|.+-+|++...-- ..+..+++|+.||++.-.-.
T Consensus 96 tnNsi~-~l~dl---------------~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 96 TNNSIQ-ELGDL---------------DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred cCcchh-hhhhc---------------chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence 888876 22110 114567788888888888763211 23567888888888765543
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.78 E-value=1.2e-05 Score=63.39 Aligned_cols=180 Identities=17% Similarity=0.077 Sum_probs=109.7
Q ss_pred HHHhccCCCCeeecCCccCCCCcc----hhccCCcchHHHHHhhhhcCCCCCc---------------cccCCCCCcEEE
Q 041723 34 NLAEKLANLKVLHLGQVNTASTVP----YASANLSSLFSLLSLIAYCKENFLP---------------SLGNLTKLNDLY 94 (228)
Q Consensus 34 ~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~~~l~~~~~~~~p---------------~~~~l~~L~~L~ 94 (228)
.++-+|++|+.+++++|.+....| +.++.-..|.+|. +++|.++.+- ..++-+.|+++.
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~--l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vi 163 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLK--LNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVI 163 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEE--eecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence 345567777777777776655444 3344445677777 7777664332 123446677777
Q ss_pred eeCCcCCCCCCChhh--cccccccc-------ccccch--------hhhcCCCCCEEeccCCcccccC----ccccccCC
Q 041723 95 LFGNDFSGKVPDSLG--DLLQLNYL-------TGEILV--------EIRKLTQLHILRLAENQLEGSV----PSSIFELR 153 (228)
Q Consensus 95 l~~n~l~~~~p~~~~--~l~~~~~l-------~~~~~~--------~~~~l~~L~~L~ls~n~l~~~~----~~~~~~l~ 153 (228)
...|++. ..+.... .+.+...+ .+.-|. .++.+.+|+.||+..|.++-.. ...+..++
T Consensus 164 cgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~ 242 (388)
T COG5238 164 CGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN 242 (388)
T ss_pred eccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence 7777776 4443221 11111111 122222 3456789999999999987332 23456788
Q ss_pred CCCEEEccCCccccCCCcchh-hh-----cCCCCCEEEccCCccccccCcc------ccCCCCCccccccccccccc
Q 041723 154 NLRALDLSDNNLSGTGDLNMV-LL-----NLESLTALVLSSNKLSLLAGTT------VNTNLPNFTIIGSVHETLAS 218 (228)
Q Consensus 154 ~L~~L~l~~n~~~~~~~~p~~-~~-----~l~~L~~L~L~~n~l~~~~~~~------~~~~l~~L~~l~l~~n~~~~ 218 (228)
.|+.|.+.+|.++. .-... +. ..++|..|....|-..+..... --..+|-|..+.+.+|++.-
T Consensus 243 ~lrEL~lnDClls~--~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 243 LLRELRLNDCLLSN--EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hhhhccccchhhcc--ccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 89999999999885 32222 22 2478899988888765532221 02457888888888888863
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.70 E-value=2.2e-05 Score=70.76 Aligned_cols=88 Identities=22% Similarity=0.305 Sum_probs=44.0
Q ss_pred hcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCcccccc--C----ccc
Q 041723 126 RKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLA--G----TTV 199 (228)
Q Consensus 126 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~--~----~~~ 199 (228)
.++++|..||+|+.+++. + ..++.+++|+.|.+.+-.+...+.+. .+.++.+|++||++........ . ..
T Consensus 170 ~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~-~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec- 245 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLI-DLFNLKKLRVLDISRDKNNDDTKIIEQYLEC- 245 (699)
T ss_pred hccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHH-HHhcccCCCeeeccccccccchHHHHHHHHh-
Confidence 355566666666666652 2 34556666666665555444221222 2345566666666555443221 1 11
Q ss_pred cCCCCCcccccccccccc
Q 041723 200 NTNLPNFTIIGSVHETLA 217 (228)
Q Consensus 200 ~~~l~~L~~l~l~~n~~~ 217 (228)
...+|+|+.||.|++.++
T Consensus 246 ~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 246 GMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cccCccccEEecCCcchh
Confidence 234566666666555443
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.49 E-value=4.5e-05 Score=59.61 Aligned_cols=109 Identities=28% Similarity=0.282 Sum_probs=59.3
Q ss_pred hhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcC--CCCCCChhhccccccccccccchhhhcCCCCCEEe
Q 041723 58 YASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDF--SGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILR 135 (228)
Q Consensus 58 ~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l--~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ 135 (228)
.-...+..|+.++ +.++.+.++..+-.+++|+.|.++.|.. .+.++. -...+++|++++
T Consensus 37 gl~d~~~~le~ls--~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-----------------l~e~~P~l~~l~ 97 (260)
T KOG2739|consen 37 GLTDEFVELELLS--VINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEV-----------------LAEKAPNLKVLN 97 (260)
T ss_pred cccccccchhhhh--hhccceeecccCCCcchhhhhcccCCccccccccee-----------------hhhhCCceeEEe
Confidence 3344556667766 6666665555555667777777777733 221111 112346777777
Q ss_pred ccCCccccc-CccccccCCCCCEEEccCCccccCCCc-chhhhcCCCCCEEE
Q 041723 136 LAENQLEGS-VPSSIFELRNLRALDLSDNNLSGTGDL-NMVLLNLESLTALV 185 (228)
Q Consensus 136 ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~-p~~~~~l~~L~~L~ 185 (228)
+++|.++.. .-.....+.+|..|++.+|..+..... -..|.-+++|+.++
T Consensus 98 ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 98 LSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred ecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 777777621 012244566677777777766642111 12333445555543
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.36 E-value=0.00036 Score=63.13 Aligned_cols=130 Identities=19% Similarity=0.252 Sum_probs=77.3
Q ss_pred ccccccccCCCC-h----HHHHh-ccCCCCeeecCCccCCC-CcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcE
Q 041723 20 SNAMKTLLQSPS-L----ANLAE-KLANLKVLHLGQVNTAS-TVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLND 92 (228)
Q Consensus 20 ~~l~~l~l~~~~-l----~~~~~-~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~ 92 (228)
.+|+.|++++.. + |..++ .++.|+.|.+++-.+.. ..-.....+++|..|| ++++.++.+..+.++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLD--IS~TnI~nl~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLD--ISGTNISNLSGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceee--cCCCCccCcHHHhccccHHH
Confidence 467777777765 2 23333 36777777777654432 2334455667777777 77777766666667777777
Q ss_pred EEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCccccc--Ccc----ccccCCCCCEEEccCCccc
Q 041723 93 LYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGS--VPS----SIFELRNLRALDLSDNNLS 166 (228)
Q Consensus 93 L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~----~~~~l~~L~~L~l~~n~~~ 166 (228)
|.+.+=.++ .-.. ..++..+++|+.||+|....... +.. .-..+|.|+.||.+++.+.
T Consensus 200 L~mrnLe~e-~~~~---------------l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFE-SYQD---------------LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCC-chhh---------------HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 777655444 1110 12345677777777776543222 121 1234677778887777766
Q ss_pred c
Q 041723 167 G 167 (228)
Q Consensus 167 ~ 167 (228)
.
T Consensus 264 ~ 264 (699)
T KOG3665|consen 264 E 264 (699)
T ss_pred H
Confidence 4
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.24 E-value=0.00056 Score=57.75 Aligned_cols=137 Identities=22% Similarity=0.251 Sum_probs=86.2
Q ss_pred HhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC-CCCc-cccCCCCCcEEEeeCC-cCCCCCCChhhccc
Q 041723 36 AEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE-NFLP-SLGNLTKLNDLYLFGN-DFSGKVPDSLGDLL 112 (228)
Q Consensus 36 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~-~~~p-~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~ 112 (228)
+..+.+++.|++++|.+.. +|. --++|++|. +++|.- ..+| .+ .++|+.|++++| .+. .+|..+..|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~--Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~sLe~L~ 118 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV---LPNELTEIT--IENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPESVRSLE 118 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEE--ccCCCCcccCCchh--hhhhhheEccCccccc-ccccccceEE
Confidence 4557999999999998765 342 123588888 888655 6777 44 267999999998 555 7887766654
Q ss_pred cccccccccchhhhcC-CCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCc
Q 041723 113 QLNYLTGEILVEIRKL-TQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNK 190 (228)
Q Consensus 113 ~~~~l~~~~~~~~~~l-~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~ 190 (228)
-. ......++.+ ++|+.|.+.++......+..-.-+++|+.|++++|... .+|..+. .+|++|.++.+.
T Consensus 119 L~----~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i---~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 119 IK----GSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI---ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred eC----CCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc---cCccccc--ccCcEEEecccc
Confidence 21 1111123444 36888887544321011100112368999999988865 3444333 578999987763
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.00014 Score=57.69 Aligned_cols=86 Identities=24% Similarity=0.201 Sum_probs=72.1
Q ss_pred hcccccccccccCCCChHH--HHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc---cccCCCCC
Q 041723 16 YGTASNAMKTLLQSPSLAN--LAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP---SLGNLTKL 90 (228)
Q Consensus 16 ~~~l~~l~~l~l~~~~l~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p---~~~~l~~L 90 (228)
-..+.+..+|.+.++.+.+ ...+++.|++|.|+-|.++... .+..+++|+.|+ +..|.|..+. .+.++++|
T Consensus 15 ~sdl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElY--LRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 15 CSDLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELY--LRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred hhHHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch--hHHHHHHHHHHH--HHhcccccHHHHHHHhcCchh
Confidence 3447788999999999765 4567999999999999998644 478899999999 9999997776 77899999
Q ss_pred cEEEeeCCcCCCCCC
Q 041723 91 NDLYLFGNDFSGKVP 105 (228)
Q Consensus 91 ~~L~l~~n~l~~~~p 105 (228)
+.|-+..|.-.|.-+
T Consensus 91 r~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAG 105 (388)
T ss_pred hhHhhccCCcccccc
Confidence 999999998776555
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.93 E-value=0.00068 Score=53.15 Aligned_cols=84 Identities=27% Similarity=0.370 Sum_probs=47.3
Q ss_pred hhcCCCCCEEeccCC--cccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCcccccc---Cccc
Q 041723 125 IRKLTQLHILRLAEN--QLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLA---GTTV 199 (228)
Q Consensus 125 ~~~l~~L~~L~ls~n--~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~~ 199 (228)
+..+++|+.|.++.| ++.+.++.....+++|+++++++|.+.....+++ +..+.+|..|++..|..+..- ...
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~~~~l~dyre~v- 138 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCSVTNLDDYREKV- 138 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcchhhhhcccCCccccccHHHHH-
Confidence 345667777777777 4444444444555777777777777664323333 445566667777666555421 112
Q ss_pred cCCCCCccccc
Q 041723 200 NTNLPNFTIIG 210 (228)
Q Consensus 200 ~~~l~~L~~l~ 210 (228)
+.-+++|++++
T Consensus 139 f~ll~~L~~LD 149 (260)
T KOG2739|consen 139 FLLLPSLKYLD 149 (260)
T ss_pred HHHhhhhcccc
Confidence 44456666655
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=2.2e-05 Score=62.11 Aligned_cols=102 Identities=26% Similarity=0.369 Sum_probs=74.1
Q ss_pred CCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccc
Q 041723 87 LTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLS 166 (228)
Q Consensus 87 l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 166 (228)
+.+.+.|++.+|.+.+ +. -..+|+.|+.|.+|-|.|+. + ..+..+.+|++|.|..|.+.
T Consensus 18 l~~vkKLNcwg~~L~D-Is------------------ic~kMp~lEVLsLSvNkIss-L-~pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-IS------------------ICEKMPLLEVLSLSVNKISS-L-APLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HHHhhhhcccCCCccH-HH------------------HHHhcccceeEEeecccccc-c-hhHHHHHHHHHHHHHhcccc
Confidence 4556677777877762 11 24578899999999999983 3 34788999999999999988
Q ss_pred cCCCcchhhhcCCCCCEEEccCCccccccCcc----ccCCCCCccccc
Q 041723 167 GTGDLNMVLLNLESLTALVLSSNKLSLLAGTT----VNTNLPNFTIIG 210 (228)
Q Consensus 167 ~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~~l~~L~~l~ 210 (228)
+..++ ..+.++++|+.|-|..|+..+..+.. ++..+|+|+.||
T Consensus 77 sldEL-~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 77 SLDEL-EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cHHHH-HHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 64333 34788899999999999888765543 245577777665
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.33 E-value=0.0046 Score=43.48 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=5.8
Q ss_pred cccCCCCCEEEccC
Q 041723 149 IFELRNLRALDLSD 162 (228)
Q Consensus 149 ~~~l~~L~~L~l~~ 162 (228)
|..++.++.+.+..
T Consensus 77 F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 77 FSNCTNLKNIDIPS 90 (129)
T ss_dssp TTT-TTECEEEETT
T ss_pred ccccccccccccCc
Confidence 33444444444433
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.25 E-value=0.0029 Score=44.53 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=43.3
Q ss_pred HhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhcccc
Q 041723 36 AEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ 113 (228)
Q Consensus 36 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 113 (228)
|..+.+|+.+.+.. .+......+|..+++++.+. +..+ +..++ .+.++++++.+.+.. .+. .++..
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~--~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~------ 75 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSIN--FPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDN------ 75 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEE--ESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TT------
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccc--cccc-ccccceeeeecccccccccccc-ccc-ccccc------
Confidence 44455555555553 33333344555555555555 5443 44444 566666677777744 222 12211
Q ss_pred ccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccC
Q 041723 114 LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSD 162 (228)
Q Consensus 114 ~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~ 162 (228)
.+..+++++.+.+..+ +.......+..+ .++.+.+..
T Consensus 76 ----------~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 76 ----------AFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ----------TTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ----------cccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 2445667777777554 332233445565 677776654
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.77 E-value=0.0043 Score=29.45 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=16.4
Q ss_pred CCCeeecCCccCCCCcchhccC
Q 041723 41 NLKVLHLGQVNTASTVPYASAN 62 (228)
Q Consensus 41 ~L~~L~l~~n~~~~~~~~~~~~ 62 (228)
+|++||+++|.++ .+|..|+.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 5789999999888 57766654
No 68
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.41 E-value=0.0003 Score=60.98 Aligned_cols=186 Identities=23% Similarity=0.186 Sum_probs=107.0
Q ss_pred ccccccCCCC--------hHHHHhccCCCCeeecCCccCCCCcc----hhccCC-cchHHHHHhhhhcCC---C--CCc-
Q 041723 22 AMKTLLQSPS--------LANLAEKLANLKVLHLGQVNTASTVP----YASANL-SSLFSLLSLIAYCKE---N--FLP- 82 (228)
Q Consensus 22 l~~l~l~~~~--------l~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l-~~L~~L~~~l~~~~~---~--~~p- 82 (228)
+..+++..|. +-..+.....|+.|++++|.+....- ..+... ..+++|. +..|.+ + .+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~--l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLE--LVSCSLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHH--hhcccccccchHHHHH
Confidence 5666666665 23456677788888888887764322 222222 4567777 777777 1 222
Q ss_pred cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccC----ccccccCCC-CCE
Q 041723 83 SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSV----PSSIFELRN-LRA 157 (228)
Q Consensus 83 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~----~~~~~~l~~-L~~ 157 (228)
.+.....++.++++.|.+. +.+..-+ ...++..+....++++|.+++|.++... ...+...++ +..
T Consensus 167 ~L~~~~~l~~l~l~~n~l~---~~g~~~l------~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~e 237 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLI---ELGLLVL------SQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRE 237 (478)
T ss_pred HHhcccchhHHHHHhcccc---hhhhHHH------hhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHH
Confidence 4445666777777777664 1111000 0011112234567888888888776221 122334444 666
Q ss_pred EEccCCccccC--CCcchhhhcC-CCCCEEEccCCccccccCcc---ccCCCCCccccccccccccc
Q 041723 158 LDLSDNNLSGT--GDLNMVLLNL-ESLTALVLSSNKLSLLAGTT---VNTNLPNFTIIGSVHETLAS 218 (228)
Q Consensus 158 L~l~~n~~~~~--~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~l~l~~n~~~~ 218 (228)
+++..|.+.+. ..+.+.+..+ ..+++++++.|.+++..... ....++.++++.++.|.+.+
T Consensus 238 l~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 238 LDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 88888877641 1233334444 56788888888887653332 14567788888888888765
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.29 E-value=0.0081 Score=28.50 Aligned_cols=11 Identities=36% Similarity=0.489 Sum_probs=4.2
Q ss_pred CEEeccCCccc
Q 041723 132 HILRLAENQLE 142 (228)
Q Consensus 132 ~~L~ls~n~l~ 142 (228)
++|++++|.++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.57 E-value=0.047 Score=24.05 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=9.9
Q ss_pred CCCcEEEeeCCcCCCCCC
Q 041723 88 TKLNDLYLFGNDFSGKVP 105 (228)
Q Consensus 88 ~~L~~L~l~~n~l~~~~p 105 (228)
++|+.|++++|+++ .+|
T Consensus 1 ~~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp TT-SEEEETSS--S-SE-
T ss_pred CccCEEECCCCCCC-CCc
Confidence 46888999999876 443
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.04 E-value=0.0036 Score=54.36 Aligned_cols=177 Identities=24% Similarity=0.171 Sum_probs=104.1
Q ss_pred CCcCCcccccc----hhhhcccccccccccCCCChH--------HHHhcc-CCCCeeecCCccCCCC----cchhccCCc
Q 041723 2 WHHGTRKKKIA----TAAYGTASNAMKTLLQSPSLA--------NLAEKL-ANLKVLHLGQVNTAST----VPYASANLS 64 (228)
Q Consensus 2 ~~~~~~~~~~~----~~~~~~l~~l~~l~l~~~~l~--------~~~~~l-~~L~~L~l~~n~~~~~----~~~~~~~l~ 64 (228)
|+.+|++..-. ...+.....+..+++++|.+- +.+... ..+++|++..|.+++. +...+....
T Consensus 93 ~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~ 172 (478)
T KOG4308|consen 93 SLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNE 172 (478)
T ss_pred hhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhccc
Confidence 44555544432 245667788999999999842 223332 4567788888877754 445566678
Q ss_pred chHHHHHhhhhcCCC-----CCc-ccc----CCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCC-CCE
Q 041723 65 SLFSLLSLIAYCKEN-----FLP-SLG----NLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQ-LHI 133 (228)
Q Consensus 65 ~L~~L~~~l~~~~~~-----~~p-~~~----~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~-L~~ 133 (228)
+++.++ +..|.+. .++ .+. ...++++|.+.+|.++ +..... + ...+...+. +..
T Consensus 173 ~l~~l~--l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t---~~~c~~------l----~~~l~~~~~~~~e 237 (478)
T KOG4308|consen 173 HLTELD--LSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT---SSSCAL------L----DEVLASGESLLRE 237 (478)
T ss_pred chhHHH--HHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC---hHHHHH------H----HHHHhccchhhHH
Confidence 899999 9999871 112 333 4677889999998876 111110 0 011222333 444
Q ss_pred EeccCCcccccC----ccccccC-CCCCEEEccCCccccC--CCcchhhhcCCCCCEEEccCCcccc
Q 041723 134 LRLAENQLEGSV----PSSIFEL-RNLRALDLSDNNLSGT--GDLNMVLLNLESLTALVLSSNKLSL 193 (228)
Q Consensus 134 L~ls~n~l~~~~----~~~~~~l-~~L~~L~l~~n~~~~~--~~~p~~~~~l~~L~~L~L~~n~l~~ 193 (228)
+++..|.+.+.. .+.+..+ .+++.++++.|.+++. ..+...+..+..++.+.++.|.+..
T Consensus 238 l~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 238 LDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 666777665331 1223444 5667777777777641 1233344455677777777777754
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.68 E-value=0.043 Score=47.40 Aligned_cols=14 Identities=14% Similarity=0.057 Sum_probs=5.8
Q ss_pred CCCCcccccccccc
Q 041723 202 NLPNFTIIGSVHET 215 (228)
Q Consensus 202 ~l~~L~~l~l~~n~ 215 (228)
.+++++.+.+.+..
T Consensus 360 ~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 360 SCPKLTDLSLSYCG 373 (482)
T ss_pred cCCCcchhhhhhhh
Confidence 34444444444333
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.39 E-value=0.19 Score=24.55 Aligned_cols=22 Identities=36% Similarity=0.350 Sum_probs=15.6
Q ss_pred cCCCCeeecCCccCCCCcchhc
Q 041723 39 LANLKVLHLGQVNTASTVPYAS 60 (228)
Q Consensus 39 l~~L~~L~l~~n~~~~~~~~~~ 60 (228)
+++|+.|++++|++....+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4578888888888876554444
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.39 E-value=0.19 Score=24.55 Aligned_cols=22 Identities=36% Similarity=0.350 Sum_probs=15.6
Q ss_pred cCCCCeeecCCccCCCCcchhc
Q 041723 39 LANLKVLHLGQVNTASTVPYAS 60 (228)
Q Consensus 39 l~~L~~L~l~~n~~~~~~~~~~ 60 (228)
+++|+.|++++|++....+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4578888888888876554444
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.38 E-value=0.0047 Score=48.07 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=50.3
Q ss_pred CCCc--cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCC
Q 041723 79 NFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLR 156 (228)
Q Consensus 79 ~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 156 (228)
+.+| ++......+.||++.|++- .+-+.+.. ++.+..++++.|.+. ..|..++....++
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~-----------------~t~~~rl~~sknq~~-~~~~d~~q~~e~~ 91 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRLV-NLGKNFSI-----------------LTRLVRLDLSKNQIK-FLPKDAKQQRETV 91 (326)
T ss_pred cccchhhhhccceeeeehhhhhHHH-hhccchHH-----------------HHHHHHHhccHhhHh-hChhhHHHHHHHH
Confidence 3566 6777788888888888765 33333332 333444455555554 3454455555555
Q ss_pred EEEccCCccccCCCcchhhhcCCCCCEEEccCCccc
Q 041723 157 ALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192 (228)
Q Consensus 157 ~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~ 192 (228)
.+++..|..+ ..|..++..+.++.+++.++.+.
T Consensus 92 ~~~~~~n~~~---~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 92 NAASHKNNHS---QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHhhccchh---hCCccccccCCcchhhhccCcch
Confidence 5555555544 34555555555555555555443
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.59 E-value=0.028 Score=27.09 Aligned_cols=18 Identities=11% Similarity=0.307 Sum_probs=8.1
Q ss_pred CCcccccccccccccCcc
Q 041723 204 PNFTIIGSVHETLASSHI 221 (228)
Q Consensus 204 ~~L~~l~l~~n~~~~~~~ 221 (228)
++|++|++++|++++..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 445555555555554443
No 77
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=89.14 E-value=0.19 Score=42.51 Aligned_cols=144 Identities=23% Similarity=0.218 Sum_probs=70.1
Q ss_pred cCCcchHHHHHhhhhcCC-CCCc--cc-cCCCCCcEEEeeCCc-CCCCCCChhhcc----ccccc---------cccccc
Q 041723 61 ANLSSLFSLLSLIAYCKE-NFLP--SL-GNLTKLNDLYLFGND-FSGKVPDSLGDL----LQLNY---------LTGEIL 122 (228)
Q Consensus 61 ~~l~~L~~L~~~l~~~~~-~~~p--~~-~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~~~~---------l~~~~~ 122 (228)
.++..|+.|+ .+.|.. ...+ .+ .+.++|+++.+..|+ ++. ..+..+ +.+.. +++++.
T Consensus 291 ~~c~~lq~l~--~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd---~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~ 365 (483)
T KOG4341|consen 291 CGCHALQVLC--YSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSD---RGFTMLGRNCPHLERLDLEECGLITDGTLA 365 (483)
T ss_pred hhhhHhhhhc--ccCCCCCchHHHHHHhcCCCceEEEeccccchhhh---hhhhhhhcCChhhhhhcccccceehhhhHh
Confidence 3456677777 777665 3333 22 357888888888776 221 111111 11111 112222
Q ss_pred hhhhcCCCCCEEeccCCccc-cc----CccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccc-cccC
Q 041723 123 VEIRKLTQLHILRLAENQLE-GS----VPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS-LLAG 196 (228)
Q Consensus 123 ~~~~~l~~L~~L~ls~n~l~-~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~ 196 (228)
.-...++.|+.+.++.+... +. +...-..+..|+.+.++++..... ..-..+..+.+|+.+++-+++-. ....
T Consensus 366 sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d-~~Le~l~~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 366 SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD-ATLEHLSICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH-HHHHHHhhCcccceeeeechhhhhhhhh
Confidence 22335566677766666532 11 011123455667777777664421 22334556667777777665432 1111
Q ss_pred ccccCCCCCccccc
Q 041723 197 TTVNTNLPNFTIIG 210 (228)
Q Consensus 197 ~~~~~~l~~L~~l~ 210 (228)
..+..++|++++..
T Consensus 445 ~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 445 SRFATHLPNIKVHA 458 (483)
T ss_pred HHHHhhCccceehh
Confidence 11144566665544
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=88.85 E-value=0.35 Score=41.70 Aligned_cols=132 Identities=23% Similarity=0.151 Sum_probs=71.3
Q ss_pred CCcchHHHHHhhhhcCC-CC--C-ccccCCCCCcEEEeeCC-cCCCCCCChhhccccccccccccchhhhcCCCCCEEec
Q 041723 62 NLSSLFSLLSLIAYCKE-NF--L-PSLGNLTKLNDLYLFGN-DFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRL 136 (228)
Q Consensus 62 ~l~~L~~L~~~l~~~~~-~~--~-p~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~l 136 (228)
..+.|+.+. +.++.. .. + +....++.|+.|+++++ ......+... ......+++|+++++
T Consensus 186 ~~~~L~~l~--l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------------~~~~~~~~~L~~l~l 250 (482)
T KOG1947|consen 186 SCPLLKRLS--LSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL-------------LLLLSICRKLKSLDL 250 (482)
T ss_pred hCchhhHhh--hcccccCChhhHHHHHhhCchhheecccCcccccccchhHh-------------hhhhhhcCCcCccch
Confidence 367788887 777754 32 2 35566788888888774 2111111110 011234567777777
Q ss_pred cCCc-ccccCccccc-cCCCCCEEEccCCc-cccCCCcchhhhcCCCCCEEEccCCccccc--cCccccCCCCCccccc
Q 041723 137 AENQ-LEGSVPSSIF-ELRNLRALDLSDNN-LSGTGDLNMVLLNLESLTALVLSSNKLSLL--AGTTVNTNLPNFTIIG 210 (228)
Q Consensus 137 s~n~-l~~~~~~~~~-~l~~L~~L~l~~n~-~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~l~~L~~l~ 210 (228)
+++. +++..-..+. .++.|+.|.+.++. +++. .+-....+++.|+.++++++..... .... ..++++++.+.
T Consensus 251 ~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~ 327 (482)
T KOG1947|consen 251 SGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELK 327 (482)
T ss_pred hhhhccCchhHHHHHhhCCCcceEccCCCCccchh-HHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhh
Confidence 7777 4433222222 36778888766666 4431 2333445667788888876655321 1222 33455555544
No 79
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=88.69 E-value=0.37 Score=40.82 Aligned_cols=152 Identities=18% Similarity=0.143 Sum_probs=84.5
Q ss_pred cccccccCCCC-hH-----HHHhccCCCCeeecCCcc-CCCCcchhc-cCCcchHHHHHhhhhcCC---CCCc-cccCCC
Q 041723 21 NAMKTLLQSPS-LA-----NLAEKLANLKVLHLGQVN-TASTVPYAS-ANLSSLFSLLSLIAYCKE---NFLP-SLGNLT 88 (228)
Q Consensus 21 ~l~~l~l~~~~-l~-----~~~~~l~~L~~L~l~~n~-~~~~~~~~~-~~l~~L~~L~~~l~~~~~---~~~p-~~~~l~ 88 (228)
.++.+..+++. ++ ..-.+..+|+++-+..|+ ++..-...+ .+.++|+.++ +..|.. +++- .-.+++
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~--~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD--LEECGLITDGTLASLSRNCP 372 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhc--ccccceehhhhHhhhccCCc
Confidence 44555555443 22 223345667777776664 222111111 3446777777 777766 2233 334577
Q ss_pred CCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCccc-ccCccccccCCCCCEEEccCCcccc
Q 041723 89 KLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLE-GSVPSSIFELRNLRALDLSDNNLSG 167 (228)
Q Consensus 89 ~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~ 167 (228)
.||.+.++.|..- ..+++..+. ..-..+..+..+.++++... +..-..+..++.|+.+++.++.-..
T Consensus 373 ~lr~lslshce~i--tD~gi~~l~----------~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 373 RLRVLSLSHCELI--TDEGIRHLS----------SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred hhccCChhhhhhh--hhhhhhhhh----------hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 7777777766532 222222111 12235677888888888864 2233456788899999998886432
Q ss_pred CCCcchhhhcCCCCCEEEc
Q 041723 168 TGDLNMVLLNLESLTALVL 186 (228)
Q Consensus 168 ~~~~p~~~~~l~~L~~L~L 186 (228)
-..+......++++++..+
T Consensus 441 k~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 441 KEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hhhhHHHHhhCccceehhh
Confidence 2234455567777776654
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.43 E-value=0.34 Score=37.06 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=5.8
Q ss_pred cchHHHHHhhhhcC
Q 041723 64 SSLFSLLSLIAYCK 77 (228)
Q Consensus 64 ~~L~~L~~~l~~~~ 77 (228)
++|+.|+ +++|.
T Consensus 151 ~~L~~L~--lsgC~ 162 (221)
T KOG3864|consen 151 PSLQDLD--LSGCP 162 (221)
T ss_pred cchheee--ccCCC
Confidence 4455555 55443
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=86.47 E-value=0.1 Score=26.29 Aligned_cols=21 Identities=10% Similarity=0.139 Sum_probs=12.0
Q ss_pred CCcccccccccccccCccccc
Q 041723 204 PNFTIIGSVHETLASSHIFCT 224 (228)
Q Consensus 204 ~~L~~l~l~~n~~~~~~~~~~ 224 (228)
++|++|+|++|.+++......
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 346666666666665554433
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.38 E-value=0.073 Score=41.63 Aligned_cols=83 Identities=13% Similarity=0.011 Sum_probs=49.7
Q ss_pred hcccccccccccCCCCh---HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCc
Q 041723 16 YGTASNAMKTLLQSPSL---ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLN 91 (228)
Q Consensus 16 ~~~l~~l~~l~l~~~~l---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~ 91 (228)
+.....-+.++++.|.+ -..|+.++.+..+|++-|.+. ..|..+...+.++.++ +..|..+..| +++..+.++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~--~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAA--SHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHH--hhccchhhCCccccccCCcc
Confidence 34444555566666652 234555566666666665553 3555666666666666 6666666666 666666666
Q ss_pred EEEeeCCcCC
Q 041723 92 DLYLFGNDFS 101 (228)
Q Consensus 92 ~L~l~~n~l~ 101 (228)
.++.-++.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 6666666543
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.29 E-value=0.086 Score=40.19 Aligned_cols=79 Identities=16% Similarity=0.096 Sum_probs=34.9
Q ss_pred CCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhh-cCCCCCEEEccCC-ccccccCccccCCCCCccc
Q 041723 131 LHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLL-NLESLTALVLSSN-KLSLLAGTTVNTNLPNFTI 208 (228)
Q Consensus 131 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~-~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~ 208 (228)
++.++-++..|..+.-+.+..++.++.+.+.+|.-.+..-+ ..+. -.++|+.|++++| +|++..... +..+++|+.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L-~~l~~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCL-ERLGGLAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHH-HHhcccccchheeeccCCCeechhHHHH-HHHhhhhHH
Confidence 45555555555444444455555555555555542220000 0111 2345566666544 344333333 444455555
Q ss_pred ccc
Q 041723 209 IGS 211 (228)
Q Consensus 209 l~l 211 (228)
|.+
T Consensus 181 L~l 183 (221)
T KOG3864|consen 181 LHL 183 (221)
T ss_pred HHh
Confidence 443
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.39 E-value=1.9 Score=21.30 Aligned_cols=18 Identities=22% Similarity=0.558 Sum_probs=14.6
Q ss_pred CCCcEEEeeCCcCCCCCCC
Q 041723 88 TKLNDLYLFGNDFSGKVPD 106 (228)
Q Consensus 88 ~~L~~L~l~~n~l~~~~p~ 106 (228)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 46889999999998 7775
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.52 E-value=2.5 Score=20.83 Aligned_cols=16 Identities=38% Similarity=0.436 Sum_probs=12.2
Q ss_pred cCCCCeeecCCccCCC
Q 041723 39 LANLKVLHLGQVNTAS 54 (228)
Q Consensus 39 l~~L~~L~l~~n~~~~ 54 (228)
+++|++|++++|.+..
T Consensus 1 L~~L~~L~L~~NkI~~ 16 (26)
T smart00365 1 LTNLEELDLSQNKIKK 16 (26)
T ss_pred CCccCEEECCCCccce
Confidence 4678888888887753
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.95 E-value=4.6 Score=35.66 Aligned_cols=74 Identities=18% Similarity=0.116 Sum_probs=45.6
Q ss_pred cccccccccccCCCC------hHHHHhccCCCCeeecCCc--cCCCCcchhcc--CCcchHHHHHhhhhcCC-CCCc---
Q 041723 17 GTASNAMKTLLQSPS------LANLAEKLANLKVLHLGQV--NTASTVPYASA--NLSSLFSLLSLIAYCKE-NFLP--- 82 (228)
Q Consensus 17 ~~l~~l~~l~l~~~~------l~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~--~l~~L~~L~~~l~~~~~-~~~p--- 82 (228)
.+.+.+..+.++.|. +.......++|+.|+|++| .+.. ..++. +...|+.|. +.+|++ +.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~--l~GNPlc~tf~~~s 290 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELV--LEGNPLCTTFSDRS 290 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHee--ecCCccccchhhhH
Confidence 345567777788886 3445556778889999888 3322 12222 234588888 888888 4332
Q ss_pred -ccc----CCCCCcEEE
Q 041723 83 -SLG----NLTKLNDLY 94 (228)
Q Consensus 83 -~~~----~l~~L~~L~ 94 (228)
.+. .+|+|..||
T Consensus 291 ~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 291 EYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHHhcchheeec
Confidence 222 467776665
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.77 E-value=7.3 Score=34.48 Aligned_cols=81 Identities=25% Similarity=0.305 Sum_probs=52.1
Q ss_pred cCCCCCEEeccCCcccccCcc---ccccCCCCCEEEccCC--ccccCCCcchhhhcCCCCCEEEccCCccccccCcc--c
Q 041723 127 KLTQLHILRLAENQLEGSVPS---SIFELRNLRALDLSDN--NLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTT--V 199 (228)
Q Consensus 127 ~l~~L~~L~ls~n~l~~~~~~---~~~~l~~L~~L~l~~n--~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~--~ 199 (228)
+.+.+..+.+++|++. .+.. .-...++|..|+|++| .+....+++. + +...|++|-+.+|++....... .
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K-~-k~l~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK-L-KGLPLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhhh-h-cCCCHHHeeecCCccccchhhhHHH
Confidence 4467788889999886 3321 2246789999999999 4443112222 2 2356899999999997653321 1
Q ss_pred c----CCCCCccccc
Q 041723 200 N----TNLPNFTIIG 210 (228)
Q Consensus 200 ~----~~l~~L~~l~ 210 (228)
+ ..+|+|..||
T Consensus 293 v~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHhcchheeec
Confidence 2 2578888776
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=47.39 E-value=14 Score=17.78 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=10.2
Q ss_pred cCCCCeeecCCcc
Q 041723 39 LANLKVLHLGQVN 51 (228)
Q Consensus 39 l~~L~~L~l~~n~ 51 (228)
+++|+.|++++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4678888888884
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.95 E-value=51 Score=35.36 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=26.2
Q ss_pred eccCCcccccCccccccCCCCCEEEccCCccc
Q 041723 135 RLAENQLEGSVPSSIFELRNLRALDLSDNNLS 166 (228)
Q Consensus 135 ~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 166 (228)
||++|.|+..-+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57899998444566788999999999999876
Done!