Query 041723
Match_columns 228
No_of_seqs 130 out of 1833
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 17:06:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041723.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041723hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.9E-28 6.6E-33 221.5 11.7 210 4-218 450-718 (768)
2 3rgz_A Protein brassinosteroid 99.9 1.1E-27 3.7E-32 216.6 14.7 217 2-223 400-699 (768)
3 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-28 4.8E-33 200.5 6.6 209 3-218 57-282 (313)
4 1ogq_A PGIP-2, polygalacturona 99.9 2E-27 7E-32 193.6 7.9 208 6-220 87-308 (313)
5 4fcg_A Uncharacterized protein 99.9 1.7E-26 6E-31 189.3 10.7 208 3-218 88-315 (328)
6 3zyj_A Leucine-rich repeat-con 99.9 2.2E-26 7.4E-31 195.7 11.4 215 2-227 70-297 (440)
7 3zyi_A Leucine-rich repeat-con 99.9 3.3E-26 1.1E-30 195.2 10.9 215 2-227 81-308 (452)
8 2z66_A Variable lymphocyte rec 99.9 3.4E-26 1.2E-30 185.5 9.9 210 2-217 34-261 (306)
9 4fcg_A Uncharacterized protein 99.9 5.4E-26 1.8E-30 186.4 10.9 197 19-222 80-295 (328)
10 1ozn_A Reticulon 4 receptor; N 99.9 6.9E-26 2.3E-30 182.0 10.9 197 20-226 32-242 (285)
11 3v47_A TOLL-like receptor 5B a 99.9 1.9E-25 6.6E-30 190.2 11.3 97 122-221 292-388 (455)
12 3v47_A TOLL-like receptor 5B a 99.9 2.8E-25 9.6E-30 189.2 12.2 99 116-217 310-408 (455)
13 4g8a_A TOLL-like receptor 4; l 99.9 5.8E-25 2E-29 193.7 13.5 98 2-101 58-161 (635)
14 2id5_A Lingo-1, leucine rich r 99.9 2.3E-25 7.8E-30 191.0 9.1 215 2-226 62-337 (477)
15 2z80_A TOLL-like receptor 2, v 99.9 2.3E-25 7.9E-30 184.2 7.6 212 2-217 58-314 (353)
16 2z62_A TOLL-like receptor 4, v 99.9 1.3E-24 4.5E-29 173.7 9.6 195 21-226 29-241 (276)
17 2id5_A Lingo-1, leucine rich r 99.9 1.8E-24 6.1E-29 185.5 9.6 214 2-221 38-289 (477)
18 4eco_A Uncharacterized protein 99.9 3.2E-25 1.1E-29 196.6 5.0 178 32-218 198-416 (636)
19 2o6q_A Variable lymphocyte rec 99.9 8.2E-24 2.8E-28 168.8 12.7 179 21-226 38-222 (270)
20 1xku_A Decorin; proteoglycan, 99.9 6.3E-24 2.2E-28 173.9 12.2 207 2-217 58-306 (330)
21 3o6n_A APL1; leucine-rich repe 99.9 3.5E-24 1.2E-28 179.3 10.0 109 3-113 52-166 (390)
22 3oja_B Anopheles plasmodium-re 99.9 3.9E-24 1.3E-28 188.3 10.6 210 3-219 58-339 (597)
23 1p9a_G Platelet glycoprotein I 99.9 5.4E-24 1.8E-28 171.7 10.4 197 17-227 7-213 (290)
24 2ft3_A Biglycan; proteoglycan, 99.9 7.6E-24 2.6E-28 173.7 11.1 207 2-217 60-307 (332)
25 3t6q_A CD180 antigen; protein- 99.9 2.4E-24 8.4E-29 189.6 8.7 210 2-217 307-536 (606)
26 3t6q_A CD180 antigen; protein- 99.9 6.1E-24 2.1E-28 187.0 11.0 218 2-222 260-518 (606)
27 1xku_A Decorin; proteoglycan, 99.9 2.2E-23 7.6E-28 170.7 12.5 206 2-215 82-330 (330)
28 2z66_A Variable lymphocyte rec 99.9 4.3E-24 1.5E-28 173.1 7.6 210 4-221 15-240 (306)
29 1ziw_A TOLL-like receptor 3; i 99.9 4.1E-23 1.4E-27 184.1 13.2 213 2-219 31-287 (680)
30 1ziw_A TOLL-like receptor 3; i 99.9 2.1E-23 7.2E-28 186.0 10.7 213 3-226 388-626 (680)
31 4eco_A Uncharacterized protein 99.9 1.4E-24 4.9E-29 192.4 2.7 199 12-217 239-470 (636)
32 3zyj_A Leucine-rich repeat-con 99.9 4.3E-23 1.5E-27 175.4 11.6 196 20-222 64-273 (440)
33 4ecn_A Leucine-rich repeat pro 99.9 6.9E-24 2.4E-28 192.9 6.9 177 32-218 440-658 (876)
34 1ozn_A Reticulon 4 receptor; N 99.9 5.5E-23 1.9E-27 165.0 11.3 192 23-221 14-218 (285)
35 3o6n_A APL1; leucine-rich repe 99.9 6.4E-23 2.2E-27 171.6 12.0 210 2-220 75-334 (390)
36 3zyi_A Leucine-rich repeat-con 99.9 6.2E-23 2.1E-27 175.0 11.9 196 20-222 75-284 (452)
37 2z7x_B TOLL-like receptor 1, v 99.9 3.2E-23 1.1E-27 179.4 10.0 212 2-219 27-414 (520)
38 2ft3_A Biglycan; proteoglycan, 99.9 7.3E-23 2.5E-27 167.8 11.4 206 2-215 84-331 (332)
39 3j0a_A TOLL-like receptor 5; m 99.9 5.8E-23 2E-27 187.4 11.4 214 2-220 30-354 (844)
40 3oja_B Anopheles plasmodium-re 99.9 5.8E-23 2E-27 180.9 11.1 206 2-217 81-358 (597)
41 3vq2_A TLR4, TOLL-like recepto 99.9 3E-23 1E-27 182.6 7.7 201 15-227 345-563 (606)
42 3vq2_A TLR4, TOLL-like recepto 99.9 9.8E-24 3.3E-28 185.7 4.5 199 18-221 326-538 (606)
43 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 9.7E-23 3.3E-27 178.2 10.6 216 2-222 58-446 (562)
44 3rfs_A Internalin B, repeat mo 99.9 3.7E-22 1.3E-26 159.4 13.1 178 15-216 36-217 (272)
45 3m19_A Variable lymphocyte rec 99.9 2.7E-22 9.2E-27 158.3 12.1 173 21-217 15-192 (251)
46 3oja_A Leucine-rich immune mol 99.9 9E-23 3.1E-27 175.6 9.4 201 2-217 40-250 (487)
47 2z7x_B TOLL-like receptor 1, v 99.9 9.6E-23 3.3E-27 176.4 9.5 107 2-114 6-117 (520)
48 1h6u_A Internalin H; cell adhe 99.9 7.6E-22 2.6E-26 160.3 13.6 191 16-222 37-235 (308)
49 3rfs_A Internalin B, repeat mo 99.9 6.6E-22 2.3E-26 157.9 12.3 186 2-218 47-236 (272)
50 3j0a_A TOLL-like receptor 5; m 99.9 2.6E-22 8.9E-27 183.1 11.1 213 3-220 55-378 (844)
51 1wwl_A Monocyte differentiatio 99.9 2.2E-23 7.5E-28 169.7 3.0 191 18-219 93-311 (312)
52 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.7E-22 1.3E-26 174.5 10.3 107 2-114 37-148 (562)
53 2o6q_A Variable lymphocyte rec 99.9 1.5E-21 5.1E-26 155.6 12.7 178 21-222 17-199 (270)
54 2z63_A TOLL-like receptor 4, v 99.9 1E-22 3.6E-27 177.7 6.1 199 18-226 323-535 (570)
55 2z80_A TOLL-like receptor 2, v 99.9 9.2E-23 3.1E-27 168.6 4.7 208 4-221 39-294 (353)
56 4glp_A Monocyte differentiatio 99.9 8.9E-23 3E-27 165.9 4.5 190 20-219 91-309 (310)
57 3o53_A Protein LRIM1, AGAP0063 99.9 3.2E-22 1.1E-26 163.1 7.6 200 3-217 41-250 (317)
58 1wwl_A Monocyte differentiatio 99.9 8.5E-23 2.9E-27 166.2 4.2 192 22-221 65-291 (312)
59 4ecn_A Leucine-rich repeat pro 99.9 2.5E-22 8.4E-27 182.7 7.0 156 56-220 440-635 (876)
60 2z81_A CD282 antigen, TOLL-lik 99.9 3.8E-22 1.3E-26 173.6 7.6 140 2-143 32-210 (549)
61 4fmz_A Internalin; leucine ric 99.9 4.2E-21 1.4E-25 158.0 13.4 205 2-221 94-328 (347)
62 4fmz_A Internalin; leucine ric 99.9 7.5E-21 2.6E-25 156.5 13.4 188 15-217 150-346 (347)
63 2z63_A TOLL-like receptor 4, v 99.8 2.2E-21 7.5E-26 169.3 10.3 159 2-163 34-210 (570)
64 2xwt_C Thyrotropin receptor; s 99.8 6.4E-22 2.2E-26 154.9 5.7 177 21-222 32-223 (239)
65 2z81_A CD282 antigen, TOLL-lik 99.8 5.1E-21 1.7E-25 166.5 11.7 187 4-226 318-514 (549)
66 3o53_A Protein LRIM1, AGAP0063 99.8 3.6E-22 1.2E-26 162.8 3.9 204 4-220 18-230 (317)
67 2xwt_C Thyrotropin receptor; s 99.8 1.1E-21 3.6E-26 153.7 5.8 187 2-214 37-236 (239)
68 1h6t_A Internalin B; cell adhe 99.8 8.9E-21 3E-25 152.9 11.1 176 15-222 41-218 (291)
69 1h6u_A Internalin H; cell adhe 99.8 1.4E-20 4.7E-25 152.9 12.2 184 21-221 20-212 (308)
70 2z62_A TOLL-like receptor 4, v 99.8 6.2E-21 2.1E-25 152.4 9.9 183 32-222 22-218 (276)
71 3m19_A Variable lymphocyte rec 99.8 1.6E-20 5.5E-25 148.1 11.2 168 3-194 21-194 (251)
72 3oja_A Leucine-rich immune mol 99.8 1.3E-21 4.3E-26 168.5 4.5 188 20-220 34-230 (487)
73 1o6v_A Internalin A; bacterial 99.8 8.5E-20 2.9E-24 156.1 15.3 190 16-222 195-393 (466)
74 1p9a_G Platelet glycoprotein I 99.8 2.2E-20 7.7E-25 150.4 10.5 181 3-193 17-209 (290)
75 1m9s_A Internalin B; cell inva 99.8 5.7E-20 2E-24 161.7 13.8 176 16-223 39-216 (605)
76 1o6v_A Internalin A; bacterial 99.8 6.8E-20 2.3E-24 156.8 13.7 70 2-78 74-146 (466)
77 3bz5_A Internalin-J, INLJ; leu 99.8 1.1E-19 3.8E-24 155.2 14.0 194 3-221 49-250 (457)
78 2v9t_B SLIT homolog 2 protein 99.8 8E-20 2.7E-24 141.5 10.2 144 43-211 14-159 (220)
79 4ezg_A Putative uncharacterize 99.8 4.3E-20 1.5E-24 140.5 8.5 155 36-218 40-195 (197)
80 2xot_A Amphoterin-induced prot 99.8 1.1E-20 3.6E-25 156.8 4.1 175 23-227 21-207 (361)
81 3bz5_A Internalin-J, INLJ; leu 99.8 3E-19 1E-23 152.5 12.8 190 10-222 32-230 (457)
82 2ca6_A RAN GTPase-activating p 99.8 2E-21 6.9E-26 162.3 -1.6 217 2-220 38-319 (386)
83 4glp_A Monocyte differentiatio 99.8 1.9E-20 6.5E-25 152.1 3.6 192 21-221 65-289 (310)
84 1xeu_A Internalin C; cellular 99.8 1.8E-19 6.2E-24 143.2 9.0 172 18-222 17-190 (263)
85 3e6j_A Variable lymphocyte rec 99.8 7.3E-19 2.5E-23 136.8 12.1 147 24-194 23-174 (229)
86 2ast_B S-phase kinase-associat 99.8 2.9E-20 1E-24 152.2 4.2 205 4-218 78-307 (336)
87 2v70_A SLIT-2, SLIT homolog 2 99.8 4.2E-19 1.4E-23 137.4 10.3 147 43-214 14-163 (220)
88 1h6t_A Internalin B; cell adhe 99.8 8.8E-19 3E-23 141.2 10.0 163 2-196 52-217 (291)
89 2o6s_A Variable lymphocyte rec 99.8 4.9E-19 1.7E-23 135.6 7.9 150 40-218 28-179 (208)
90 2o6s_A Variable lymphocyte rec 99.8 1.9E-18 6.4E-23 132.4 11.0 158 19-205 27-190 (208)
91 1m9s_A Internalin B; cell inva 99.8 3.4E-18 1.2E-22 150.4 13.6 171 1-204 48-221 (605)
92 3e6j_A Variable lymphocyte rec 99.8 2.8E-18 9.6E-23 133.5 10.3 147 42-214 21-169 (229)
93 4g8a_A TOLL-like receptor 4; l 99.8 7.7E-19 2.6E-23 154.6 7.8 138 41-198 53-192 (635)
94 3goz_A Leucine-rich repeat-con 99.8 2.6E-19 9.1E-24 148.4 4.4 210 4-215 6-264 (362)
95 2v9t_B SLIT homolog 2 protein 99.8 1.8E-18 6E-23 133.9 8.0 147 24-193 15-166 (220)
96 1xeu_A Internalin C; cellular 99.8 1.1E-18 3.8E-23 138.6 7.0 161 3-196 26-189 (263)
97 1dce_A Protein (RAB geranylger 99.7 2E-19 6.9E-24 157.2 2.5 175 17-220 346-549 (567)
98 2ast_B S-phase kinase-associat 99.7 1.2E-19 4.2E-24 148.5 0.9 202 13-220 61-287 (336)
99 2ca6_A RAN GTPase-activating p 99.7 7.5E-20 2.6E-24 152.8 -0.5 202 14-218 26-288 (386)
100 3goz_A Leucine-rich repeat-con 99.7 2.1E-19 7.3E-24 149.0 2.1 213 2-219 28-299 (362)
101 1jl5_A Outer protein YOPM; leu 99.7 3E-18 1E-22 146.2 9.0 196 3-218 180-410 (454)
102 3g06_A SSPH2 (leucine-rich rep 99.7 2E-18 6.9E-23 152.2 7.7 81 129-221 221-301 (622)
103 1jl5_A Outer protein YOPM; leu 99.7 2.5E-18 8.6E-23 146.7 7.5 117 64-193 131-251 (454)
104 2v70_A SLIT-2, SLIT homolog 2 99.7 5.4E-18 1.8E-22 131.2 8.2 149 23-194 14-168 (220)
105 4ezg_A Putative uncharacterize 99.7 6.2E-18 2.1E-22 128.5 8.4 151 15-193 39-195 (197)
106 3cvr_A Invasion plasmid antige 99.7 7.6E-18 2.6E-22 147.0 8.8 172 21-219 60-245 (571)
107 2wfh_A SLIT homolog 2 protein 99.7 3.3E-17 1.1E-21 124.2 10.1 126 73-226 17-143 (193)
108 1w8a_A SLIT protein; signaling 99.7 2.1E-17 7.1E-22 125.2 8.8 128 43-194 11-141 (192)
109 1z7x_W Ribonuclease inhibitor; 99.7 3.1E-19 1.1E-23 152.0 -2.4 96 4-101 11-126 (461)
110 1dce_A Protein (RAB geranylger 99.7 6.6E-19 2.3E-23 154.0 -0.8 184 2-210 355-566 (567)
111 1z7x_W Ribonuclease inhibitor; 99.7 4.6E-19 1.6E-23 150.9 -1.9 201 15-220 165-414 (461)
112 4ay9_X Follicle-stimulating ho 99.7 1E-17 3.6E-22 138.2 5.1 198 5-212 18-234 (350)
113 3g06_A SSPH2 (leucine-rich rep 99.7 7.6E-17 2.6E-21 142.2 10.6 178 20-220 61-277 (622)
114 2ell_A Acidic leucine-rich nuc 99.7 7.1E-17 2.4E-21 119.4 8.8 132 39-193 23-161 (168)
115 2ell_A Acidic leucine-rich nuc 99.7 6.5E-17 2.2E-21 119.6 7.3 133 63-220 23-163 (168)
116 2xot_A Amphoterin-induced prot 99.7 1.1E-16 3.8E-21 132.6 9.4 155 42-221 20-180 (361)
117 4ay9_X Follicle-stimulating ho 99.7 4.8E-17 1.6E-21 134.2 6.1 191 25-223 14-221 (350)
118 4b8c_D Glucose-repressible alc 99.6 1.5E-17 5.1E-22 149.4 0.8 142 33-198 217-360 (727)
119 2je0_A Acidic leucine-rich nuc 99.6 3E-16 1E-20 113.7 7.4 109 39-166 16-126 (149)
120 3cvr_A Invasion plasmid antige 99.6 9.1E-17 3.1E-21 140.2 5.0 177 2-202 65-252 (571)
121 4b8c_D Glucose-repressible alc 99.6 1.2E-17 4.2E-22 150.0 -0.9 177 11-217 215-404 (727)
122 2je0_A Acidic leucine-rich nuc 99.6 2.3E-16 7.8E-21 114.4 5.8 128 63-213 16-149 (149)
123 1w8a_A SLIT protein; signaling 99.6 6.9E-16 2.4E-20 116.7 8.3 124 23-167 11-140 (192)
124 1a9n_A U2A', U2A'; complex (nu 99.6 4E-16 1.4E-20 116.4 5.4 132 36-192 15-153 (176)
125 1ds9_A Outer arm dynein; leuci 99.6 6.3E-18 2.1E-22 128.6 -5.4 156 36-218 14-186 (198)
126 1a9n_A U2A', U2A'; complex (nu 99.6 7.7E-16 2.6E-20 114.8 5.3 135 59-218 14-154 (176)
127 2o6r_A Variable lymphocyte rec 99.6 5.8E-15 2E-19 110.0 9.8 131 42-196 9-141 (177)
128 2wfh_A SLIT homolog 2 protein 99.6 8.7E-15 3E-19 110.8 9.3 126 43-192 13-139 (193)
129 2o6r_A Variable lymphocyte rec 99.5 2E-14 6.9E-19 107.1 9.5 109 40-167 28-138 (177)
130 3g39_A Variable lymphocyte rec 99.5 7.4E-14 2.5E-18 103.5 10.5 109 89-225 10-118 (170)
131 3ogk_B Coronatine-insensitive 99.5 1.8E-16 6.1E-21 138.9 -5.1 207 14-223 287-532 (592)
132 1ds9_A Outer arm dynein; leuci 99.5 1.5E-16 5.1E-21 120.9 -6.0 150 16-193 14-186 (198)
133 2r9u_A Variable lymphocyte rec 99.5 2.2E-13 7.5E-18 101.4 10.2 105 90-217 14-118 (174)
134 3sb4_A Hypothetical leucine ri 99.5 3.2E-14 1.1E-18 116.2 4.6 196 19-222 24-315 (329)
135 3ogk_B Coronatine-insensitive 99.4 1.8E-14 6.1E-19 126.2 1.5 184 22-212 140-350 (592)
136 3sb4_A Hypothetical leucine ri 99.4 3.7E-13 1.3E-17 109.9 5.8 177 10-210 83-327 (329)
137 3g39_A Variable lymphocyte rec 99.4 1.8E-12 6.3E-17 95.9 8.7 103 42-166 11-115 (170)
138 2ifg_A High affinity nerve gro 99.4 2.6E-12 8.8E-17 105.5 9.5 109 91-227 11-121 (347)
139 2r9u_A Variable lymphocyte rec 99.3 3.7E-12 1.3E-16 94.7 8.5 103 43-167 15-119 (174)
140 3un9_A NLR family member X1; l 99.3 8.3E-15 2.8E-19 121.8 -9.0 168 39-221 71-256 (372)
141 2p1m_B Transport inhibitor res 99.3 3.3E-14 1.1E-18 124.5 -5.7 90 127-218 287-386 (594)
142 2p1m_B Transport inhibitor res 99.3 1.7E-13 5.9E-18 119.9 -2.7 198 16-219 285-521 (594)
143 3un9_A NLR family member X1; l 99.2 7.9E-13 2.7E-17 109.9 -3.1 164 20-198 72-258 (372)
144 4fdw_A Leucine rich hypothetic 99.1 2.1E-10 7E-15 96.2 8.3 198 7-218 145-359 (401)
145 2ifg_A High affinity nerve gro 99.1 3.9E-10 1.3E-14 92.4 9.8 103 43-167 11-117 (347)
146 4fdw_A Leucine rich hypothetic 98.9 2.2E-09 7.6E-14 89.9 7.9 198 6-214 122-333 (401)
147 2ra8_A Uncharacterized protein 98.9 8.3E-10 2.8E-14 91.2 4.0 164 36-219 135-322 (362)
148 2ra8_A Uncharacterized protein 98.7 5.4E-09 1.9E-13 86.3 2.4 181 16-215 135-341 (362)
149 1io0_A Tropomodulin; LRR prote 98.6 5.2E-09 1.8E-13 78.3 -1.0 124 84-220 32-167 (185)
150 1io0_A Tropomodulin; LRR prote 98.5 9.6E-08 3.3E-12 71.3 4.3 129 32-193 28-165 (185)
151 3rw6_A Nuclear RNA export fact 98.4 2.3E-07 7.9E-12 73.2 4.9 83 126-210 167-257 (267)
152 4fs7_A Uncharacterized protein 98.3 2.2E-06 7.4E-11 71.4 8.6 85 124-214 292-376 (394)
153 3rw6_A Nuclear RNA export fact 98.3 2.6E-07 8.9E-12 72.9 2.4 108 16-135 137-257 (267)
154 3e4g_A ATP synthase subunit S, 98.2 4.9E-07 1.7E-11 66.7 1.6 87 129-218 61-154 (176)
155 3e4g_A ATP synthase subunit S, 98.0 7.7E-06 2.6E-10 60.3 4.7 84 88-190 61-150 (176)
156 4gt6_A Cell surface protein; l 98.0 3.5E-05 1.2E-09 64.0 9.3 66 147-217 305-370 (394)
157 4fs7_A Uncharacterized protein 97.9 3.6E-05 1.2E-09 63.9 7.9 191 7-209 172-393 (394)
158 3rfe_A Platelet glycoprotein I 97.8 2.5E-05 8.7E-10 54.7 4.7 57 132-192 11-68 (130)
159 4gt6_A Cell surface protein; l 97.5 0.00021 7.1E-09 59.3 7.0 125 83-216 260-390 (394)
160 4h09_A Hypothetical leucine ri 97.4 0.00033 1.1E-08 57.7 6.9 74 125-203 282-355 (379)
161 4h09_A Hypothetical leucine ri 97.3 0.00054 1.9E-08 56.3 7.6 86 124-214 258-343 (379)
162 1pgv_A TMD-1, tropomodulin TMD 96.5 0.00058 2E-08 51.1 0.6 124 35-191 36-169 (197)
163 3rfe_A Platelet glycoprotein I 96.5 0.0082 2.8E-07 41.7 6.5 38 129-166 31-68 (130)
164 1pgv_A TMD-1, tropomodulin TMD 96.2 0.0033 1.1E-07 47.0 3.5 89 126-214 38-136 (197)
165 2lz0_A Uncharacterized protein 46.1 27 0.00093 22.4 4.0 38 147-187 14-51 (100)
166 2lz0_A Uncharacterized protein 43.2 12 0.0004 24.2 1.8 45 5-49 5-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=1.9e-28 Score=221.46 Aligned_cols=210 Identities=21% Similarity=0.193 Sum_probs=147.8
Q ss_pred cCCcccccchhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC-
Q 041723 4 HGTRKKKIATAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE- 78 (228)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~- 78 (228)
++|++....+..++.+++|+++++++|. +|..+..+++|++|++++|.+.+..|..+..+++|++|+ +++|.+
T Consensus 450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~--L~~N~l~ 527 (768)
T 3rgz_A 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK--LSNNSFS 527 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE--CCSSCCE
T ss_pred CCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE--CCCCccc
Confidence 3444444444445555555555555554 344555555555555555555555555555555555555 555555
Q ss_pred CCCc-cccCCCCCcEEEeeCCcCCCCCCChhhcccc--------------------------------------------
Q 041723 79 NFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ-------------------------------------------- 113 (228)
Q Consensus 79 ~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~-------------------------------------------- 113 (228)
+.+| .++.+++|+.|++++|.++|.+|..++....
T Consensus 528 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 607 (768)
T 3rgz_A 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence 3455 5555555555555555555555554433211
Q ss_pred ---------ccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEE
Q 041723 114 ---------LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTAL 184 (228)
Q Consensus 114 ---------~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L 184 (228)
.+.+.+..|..++.+++|+.|++++|.+++.+|..++.++.|+.|++++|.+++ .+|..++.+++|++|
T Consensus 608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g--~ip~~l~~L~~L~~L 685 (768)
T 3rgz_A 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG--SIPDEVGDLRGLNIL 685 (768)
T ss_dssp GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS--CCCGGGGGCTTCCEE
T ss_pred ccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC--CCChHHhCCCCCCEE
Confidence 022334455566677889999999999999999999999999999999999998 899999999999999
Q ss_pred EccCCccccccCccccCCCCCccccccccccccc
Q 041723 185 VLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLAS 218 (228)
Q Consensus 185 ~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~ 218 (228)
+|++|++++.+|.. +.+++.|++|++++|++++
T Consensus 686 dLs~N~l~g~ip~~-l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 686 DLSSNKLDGRIPQA-MSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp ECCSSCCEECCCGG-GGGCCCCSEEECCSSEEEE
T ss_pred ECCCCcccCcCChH-HhCCCCCCEEECcCCcccc
Confidence 99999999999999 9999999999999999875
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=1.1e-27 Score=216.56 Aligned_cols=217 Identities=21% Similarity=0.247 Sum_probs=192.0
Q ss_pred CCcCCcccccchhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
++++|.+....+..++.+++|+++++++|. +|+.+..+++|++|++++|.+.+..|..+..+++|++|+ +++|.
T Consensus 400 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~--L~~N~ 477 (768)
T 3rgz_A 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI--LDFND 477 (768)
T ss_dssp ECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE--CCSSC
T ss_pred ECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE--ecCCc
Confidence 456777777788889999999999999996 578899999999999999999999999999999999999 99999
Q ss_pred C-CCCc-cccCCCCCcEEEeeCCcCCCCCCChhhcccc-------ccccccccchhhhcCCCCCEEeccCCcccccCccc
Q 041723 78 E-NFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ-------LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSS 148 (228)
Q Consensus 78 ~-~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~-------~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 148 (228)
+ +.+| .+..+++|++|++++|.+++.+|..++.++. .|.+.+.+|..++.+++|+.|++++|.+.+.+|..
T Consensus 478 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence 9 5778 8899999999999999999999999888877 45566889999999999999999999988776654
Q ss_pred c----------------------------------------------------------------------ccCCCCCEE
Q 041723 149 I----------------------------------------------------------------------FELRNLRAL 158 (228)
Q Consensus 149 ~----------------------------------------------------------------------~~l~~L~~L 158 (228)
+ +.+++|+.|
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L 637 (768)
T 3rgz_A 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637 (768)
T ss_dssp GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence 3 335779999
Q ss_pred EccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCcccc
Q 041723 159 DLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFC 223 (228)
Q Consensus 159 ~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 223 (228)
++++|.+++ .+|..++.++.|+.|+|++|.+++.+|.. ++++++|++|++++|++++.....
T Consensus 638 dLs~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 638 DMSYNMLSG--YIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp ECCSSCCBS--CCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEECCCGG
T ss_pred ECcCCcccc--cCCHHHhccccCCEEeCcCCccCCCCChH-HhCCCCCCEEECCCCcccCcCChH
Confidence 999999998 89999999999999999999999999999 999999999999999999755443
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=1.4e-28 Score=200.53 Aligned_cols=209 Identities=23% Similarity=0.286 Sum_probs=156.9
Q ss_pred CcCCcccc--cchhhhcccccccccccCC-CC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhh
Q 041723 3 HHGTRKKK--IATAAYGTASNAMKTLLQS-PS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAY 75 (228)
Q Consensus 3 ~~~~~~~~--~~~~~~~~l~~l~~l~l~~-~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~ 75 (228)
++++.+.. ..+..++.+++|++|++++ |. +|+.+.++++|++|++++|.+++..|..+..+++|++|+ +++
T Consensus 57 L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~--Ls~ 134 (313)
T 1ogq_A 57 LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD--FSY 134 (313)
T ss_dssp EECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE--CCS
T ss_pred CCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe--CCC
Confidence 45666665 5667888888999998884 54 677888888999999988888877888888888888888 888
Q ss_pred cCC-CCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccc-c-------ccccccccchhhhcCCCCCEEeccCCcccccC
Q 041723 76 CKE-NFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLL-Q-------LNYLTGEILVEIRKLTQLHILRLAENQLEGSV 145 (228)
Q Consensus 76 ~~~-~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~-~-------~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 145 (228)
|.+ +.+| .+..+++|++|++++|.+++.+|..++.++ . .+.+.+..|..++.++ |+.|++++|.+.+..
T Consensus 135 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~ 213 (313)
T 1ogq_A 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA 213 (313)
T ss_dssp SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECC
T ss_pred CccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcC
Confidence 888 4777 788888888999988888878888887776 3 3445566777777666 777777777777666
Q ss_pred ccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccccc
Q 041723 146 PSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLAS 218 (228)
Q Consensus 146 ~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~ 218 (228)
|..+..+++|+.|++++|.+++ .+|. +..+++|++|++++|.+++..|.. +..+++|++|++++|++++
T Consensus 214 ~~~~~~l~~L~~L~L~~N~l~~--~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 214 SVLFGSDKNTQKIHLAKNSLAF--DLGK-VGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp GGGCCTTSCCSEEECCSSEECC--BGGG-CCCCTTCCEEECCSSCCEECCCGG-GGGCTTCCEEECCSSEEEE
T ss_pred CHHHhcCCCCCEEECCCCceee--ecCc-ccccCCCCEEECcCCcccCcCChH-HhcCcCCCEEECcCCcccc
Confidence 6667777777777777777764 3333 566677777777777777666666 6667777777777777663
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=2e-27 Score=193.65 Aligned_cols=208 Identities=21% Similarity=0.267 Sum_probs=184.4
Q ss_pred CcccccchhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC-CC
Q 041723 6 TRKKKIATAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE-NF 80 (228)
Q Consensus 6 ~~~~~~~~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~-~~ 80 (228)
|.+....+..++.+++|++|++++|. +|+.+..+++|++|++++|.+.+..|..+..+++|++|+ +++|.+ +.
T Consensus 87 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~--L~~N~l~~~ 164 (313)
T 1ogq_A 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT--FDGNRISGA 164 (313)
T ss_dssp TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE--CCSSCCEEE
T ss_pred CcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE--CcCCcccCc
Confidence 77777788899999999999999997 578899999999999999999989999999999999999 999999 48
Q ss_pred Cc-cccCCC-CCcEEEeeCCcCCCCCCChhhcccc------ccccccccchhhhcCCCCCEEeccCCcccccCccccccC
Q 041723 81 LP-SLGNLT-KLNDLYLFGNDFSGKVPDSLGDLLQ------LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFEL 152 (228)
Q Consensus 81 ~p-~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~------~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l 152 (228)
+| .+..++ +|+.|++++|.+++.+|..++.++- .+.+.+..|..+..+++|+.|++++|.+.+..|. +..+
T Consensus 165 ~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l 243 (313)
T 1ogq_A 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS 243 (313)
T ss_dssp CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCC
T ss_pred CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-cccc
Confidence 88 888888 9999999999999888988877651 3445667888899999999999999999865554 8889
Q ss_pred CCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccc-cccCc
Q 041723 153 RNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHET-LASSH 220 (228)
Q Consensus 153 ~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~ 220 (228)
++|++|++++|.+++ .+|.++..+++|++|++++|++++.+|.. ..+++|+.+++++|+ +.+.|
T Consensus 244 ~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 244 KNLNGLDLRNNRIYG--TLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp TTCCEEECCSSCCEE--CCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSSEEESTT
T ss_pred CCCCEEECcCCcccC--cCChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCCCccCCC
Confidence 999999999999998 88999999999999999999999887764 789999999988887 44433
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.7e-26 Score=189.33 Aligned_cols=208 Identities=22% Similarity=0.193 Sum_probs=131.8
Q ss_pred CcCCcccccchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC-
Q 041723 3 HHGTRKKKIATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE- 78 (228)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~- 78 (228)
++++.+..++ ..++.+++|++|++++|. +|+.+..+++|++|++++|.+. .+|..+..+++|++|+ +++|.+
T Consensus 88 L~~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~--L~~n~~~ 163 (328)
T 4fcg_A 88 LRSVPLPQFP-DQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS--IRACPEL 163 (328)
T ss_dssp EESSCCSSCC-SCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE--EEEETTC
T ss_pred ccCCCchhcC-hhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE--CCCCCCc
Confidence 3455555443 335556677777777665 4566666777777777777666 4566666777777777 777655
Q ss_pred CCCc-ccc---------CCCCCcEEEeeCCcCCCCCCChhhccccccccc------cccchhhhcCCCCCEEeccCCccc
Q 041723 79 NFLP-SLG---------NLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT------GEILVEIRKLTQLHILRLAENQLE 142 (228)
Q Consensus 79 ~~~p-~~~---------~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~------~~~~~~~~~l~~L~~L~ls~n~l~ 142 (228)
+.+| .+. .+++|++|++++|.++ .+|..++.++.+..+. ..+|..++.+++|+.|++++|.+.
T Consensus 164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~ 242 (328)
T 4fcg_A 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL 242 (328)
T ss_dssp CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTC
T ss_pred cccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcch
Confidence 5555 443 2667777777777766 6666666655533221 134555666667777777776666
Q ss_pred ccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccccc
Q 041723 143 GSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLAS 218 (228)
Q Consensus 143 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~ 218 (228)
+.+|..++.+++|+.|++++|.+.+ .+|..+..+++|++|++++|.+.+.+|.. +.++++++.+++..+.+..
T Consensus 243 ~~~p~~~~~l~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~L~~n~~~~~iP~~-l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 243 RNYPPIFGGRAPLKRLILKDCSNLL--TLPLDIHRLTQLEKLDLRGCVNLSRLPSL-IAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CBCCCCTTCCCCCCEEECTTCTTCC--BCCTTGGGCTTCCEEECTTCTTCCCCCGG-GGGSCTTCEEECCGGGSCC
T ss_pred hhhHHHhcCCCCCCEEECCCCCchh--hcchhhhcCCCCCEEeCCCCCchhhccHH-HhhccCceEEeCCHHHHHH
Confidence 6666666666777777777766665 66666666677777777776666666666 6667777766666555443
No 6
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=2.2e-26 Score=195.72 Aligned_cols=215 Identities=23% Similarity=0.224 Sum_probs=172.5
Q ss_pred CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
.+++|+++.+.+..++.+++|++|++++|.+ +..+..+++|++|++++|.++...+..+..+++|++|+ +++|.
T Consensus 70 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--L~~N~ 147 (440)
T 3zyj_A 70 NLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW--LRNNP 147 (440)
T ss_dssp ECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE--CCSCC
T ss_pred EccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee--CCCCc
Confidence 4678888888888899999999999999873 46788889999999999988877777888899999999 99999
Q ss_pred CCCCc--cccCCCCCcEEEeeCCcCCCCCCC-hhhccccccccc------cccchhhhcCCCCCEEeccCCcccccCccc
Q 041723 78 ENFLP--SLGNLTKLNDLYLFGNDFSGKVPD-SLGDLLQLNYLT------GEILVEIRKLTQLHILRLAENQLEGSVPSS 148 (228)
Q Consensus 78 ~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~~~~l~------~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 148 (228)
+..++ .+..+++|+.|++++|...+.++. .+..++++..+. ..+| .+..+++|+.|++++|.+.+..|..
T Consensus 148 i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~ 226 (440)
T 3zyj_A 148 IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGS 226 (440)
T ss_dssp CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTT
T ss_pred ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhh
Confidence 87666 688889999999988544334443 455565543332 2333 4677888999999999998777888
Q ss_pred cccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccCC
Q 041723 149 IFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTKI 227 (228)
Q Consensus 149 ~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~ 227 (228)
+..+++|+.|++++|.+++ ..+..+.++++|+.|+|++|++++..+.. +..+++|+.|+ +.++++.|+|++
T Consensus 227 ~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~-----L~~Np~~CdC~l 297 (440)
T 3zyj_A 227 FQGLMHLQKLWMIQSQIQV--IERNAFDNLQSLVEINLAHNNLTLLPHDL-FTPLHHLERIH-----LHHNPWNCNCDI 297 (440)
T ss_dssp TTTCTTCCEEECTTCCCCE--ECTTSSTTCTTCCEEECTTSCCCCCCTTT-TSSCTTCCEEE-----CCSSCEECSSTT
T ss_pred hccCccCCEEECCCCceeE--EChhhhcCCCCCCEEECCCCCCCccChhH-hccccCCCEEE-----cCCCCccCCCCc
Confidence 8899999999999999986 56677888999999999999999877777 88899999999 566677888875
No 7
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=3.3e-26 Score=195.22 Aligned_cols=215 Identities=21% Similarity=0.178 Sum_probs=165.1
Q ss_pred CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
.+++|+++.+.+..|+.+++|++|++++|.+ +..+..+++|++|++++|.++...+..+..+++|++|+ +++|.
T Consensus 81 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--L~~N~ 158 (452)
T 3zyi_A 81 NLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW--LRNNP 158 (452)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE--CCSCC
T ss_pred ECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE--CCCCC
Confidence 4667888888888888888888888888873 45777888888888888888776667788888888888 88888
Q ss_pred CCCCc--cccCCCCCcEEEeeCCcCCCCCCC-hhhccccccccc------cccchhhhcCCCCCEEeccCCcccccCccc
Q 041723 78 ENFLP--SLGNLTKLNDLYLFGNDFSGKVPD-SLGDLLQLNYLT------GEILVEIRKLTQLHILRLAENQLEGSVPSS 148 (228)
Q Consensus 78 ~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~~~~l~------~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 148 (228)
+..+| .+..+++|+.|++++|...+.++. .+..++++..+. ..+| .+..+++|+.|++++|.+.+..|..
T Consensus 159 l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~ 237 (452)
T 3zyi_A 159 IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGS 237 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGG
T ss_pred cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCccc
Confidence 86666 677888888888887543334443 355555533321 1223 4667788899999999988777788
Q ss_pred cccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccCC
Q 041723 149 IFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTKI 227 (228)
Q Consensus 149 ~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~ 227 (228)
+..+++|+.|++++|.+++ ..+..+.++++|+.|+|++|++++.++.. +..+++|+.|+ +.++++.|+|++
T Consensus 238 ~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~-----L~~Np~~CdC~~ 308 (452)
T 3zyi_A 238 FHGLSSLKKLWVMNSQVSL--IERNAFDGLASLVELNLAHNNLSSLPHDL-FTPLRYLVELH-----LHHNPWNCDCDI 308 (452)
T ss_dssp GTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCSCCCTTS-STTCTTCCEEE-----CCSSCEECSTTT
T ss_pred ccCccCCCEEEeCCCcCce--ECHHHhcCCCCCCEEECCCCcCCccChHH-hccccCCCEEE-----ccCCCcCCCCCc
Confidence 8889999999999999886 56777888899999999999998877776 88889999998 455577888875
No 8
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=3.4e-26 Score=185.54 Aligned_cols=210 Identities=18% Similarity=0.157 Sum_probs=178.5
Q ss_pred CCcCCcccccchhhhcccccccccccCCCCh------HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhh
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL------ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAY 75 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~ 75 (228)
.+++++++.+....++.+++|++|++++|.+ +..+..+++|++|++++|.+.. ++..+..+++|++|+ +++
T Consensus 34 ~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~--l~~ 110 (306)
T 2z66_A 34 ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD--FQH 110 (306)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEE--CTT
T ss_pred ECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEE--CCC
Confidence 4678889988888899999999999999974 5778889999999999998874 677789999999999 999
Q ss_pred cCCCCCc---cccCCCCCcEEEeeCCcCCCCCCChhhccccccc-------ccc-ccchhhhcCCCCCEEeccCCccccc
Q 041723 76 CKENFLP---SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNY-------LTG-EILVEIRKLTQLHILRLAENQLEGS 144 (228)
Q Consensus 76 ~~~~~~p---~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~-------l~~-~~~~~~~~l~~L~~L~ls~n~l~~~ 144 (228)
|.+..++ .+..+++|++|++++|.+.+..+..+..++.+.. +.+ ..|..+..+++|+.|++++|.+.+.
T Consensus 111 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp SEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred CcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCc
Confidence 9995554 6888999999999999998777777777666433 334 4678888999999999999999977
Q ss_pred CccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCC-Ccccccccccccc
Q 041723 145 VPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLP-NFTIIGSVHETLA 217 (228)
Q Consensus 145 ~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~l~l~~n~~~ 217 (228)
.|..+..+++|+.|++++|.+++ ..+..+..+++|++|++++|++++..+.. +..++ +|++|++++|.++
T Consensus 191 ~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 191 SPTAFNSLSSLQVLNMSHNNFFS--LDTFPYKCLNSLQVLDYSLNHIMTSKKQE-LQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSB--CCSGGGTTCTTCCEEECTTSCCCBCSSSS-CCCCCTTCCEEECTTCCEE
T ss_pred CHHHhcCCCCCCEEECCCCccCc--cChhhccCcccCCEeECCCCCCcccCHHH-HHhhhccCCEEEccCCCee
Confidence 68889999999999999999986 44557888999999999999999988888 88885 8999997766654
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=5.4e-26 Score=186.44 Aligned_cols=197 Identities=19% Similarity=0.219 Sum_probs=174.1
Q ss_pred cccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcEEE
Q 041723 19 ASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLNDLY 94 (228)
Q Consensus 19 l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~L~ 94 (228)
..+++.++++++. +|+.+.++++|++|++++|.+. .+|..+..+++|++|+ +++|.+..+| .+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~--Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLT--LARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEE--EESCCCCCCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEE--CCCCccccCcHHHhcCcCCCEEE
Confidence 3688999999997 7888999999999999999998 7889999999999999 9999999899 999999999999
Q ss_pred eeCCcCCCCCCChhhc---------cccccccc------cccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEE
Q 041723 95 LFGNDFSGKVPDSLGD---------LLQLNYLT------GEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALD 159 (228)
Q Consensus 95 l~~n~l~~~~p~~~~~---------l~~~~~l~------~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 159 (228)
+++|.+.+.+|..++. ++.+..+. ..+|..++.+++|+.|++++|.+. .+|..+..+++|+.|+
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEE
Confidence 9999888899987654 55533321 278888999999999999999999 5777899999999999
Q ss_pred ccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723 160 LSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF 222 (228)
Q Consensus 160 l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 222 (228)
+++|.+.+ .+|..+..+++|++|++++|.+.+..|.. +.++++|++|++++|.+.+....
T Consensus 236 Ls~n~~~~--~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 236 LRGCTALR--NYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp CTTCTTCC--BCCCCTTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCCEEECTTCTTCCCCCG
T ss_pred CcCCcchh--hhHHHhcCCCCCCEEECCCCCchhhcchh-hhcCCCCCEEeCCCCCchhhccH
Confidence 99999887 88999999999999999999999999988 89999999999999887664433
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=6.9e-26 Score=182.01 Aligned_cols=197 Identities=21% Similarity=0.177 Sum_probs=143.7
Q ss_pred ccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC-CCCC-c-cccCCCCCcE
Q 041723 20 SNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK-ENFL-P-SLGNLTKLND 92 (228)
Q Consensus 20 ~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~-~~~~-p-~~~~l~~L~~ 92 (228)
++++++++++|.+ ++.+..+++|++|++++|.+++..+..+..+++|++|+ +++|. +..+ | .+..+++|++
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD--LSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE--CCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEe--CCCCCCccccCHHHhcCCcCCCE
Confidence 4666777776662 24566667777777777766665566666777777777 77775 5544 3 5666777777
Q ss_pred EEeeCCcCCCCCCChhhcccccc-------ccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCcc
Q 041723 93 LYLFGNDFSGKVPDSLGDLLQLN-------YLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNL 165 (228)
Q Consensus 93 L~l~~n~l~~~~p~~~~~l~~~~-------~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 165 (228)
|++++|.+++..|..+..++++. .+.+..+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 77777776654455555555432 23333344577889999999999999855555688999999999999999
Q ss_pred ccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccC
Q 041723 166 SGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTK 226 (228)
Q Consensus 166 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~ 226 (228)
++ ..|..+..+++|++|++++|.+++..+.. +..+++|+++++++|. +.|+|+
T Consensus 190 ~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~N~-----~~c~~~ 242 (285)
T 1ozn_A 190 AH--VHPHAFRDLGRLMTLYLFANNLSALPTEA-LAPLRALQYLRLNDNP-----WVCDCR 242 (285)
T ss_dssp CE--ECTTTTTTCTTCCEEECCSSCCSCCCHHH-HTTCTTCCEEECCSSC-----EECSGG
T ss_pred cc--cCHhHccCcccccEeeCCCCcCCcCCHHH-cccCcccCEEeccCCC-----ccCCCC
Confidence 87 66888999999999999999999887777 8899999999966654 456654
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1.9e-25 Score=190.20 Aligned_cols=97 Identities=27% Similarity=0.289 Sum_probs=70.4
Q ss_pred chhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccC
Q 041723 122 LVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNT 201 (228)
Q Consensus 122 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 201 (228)
|..++.+++|++|++++|.+.+..|..+..+++|+.|++++|.+++ ..|..+.++++|++|++++|.+++..+.. +.
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~ 368 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS--IDSRMFENLDKLEVLDLSYNHIRALGDQS-FL 368 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE--ECGGGGTTCTTCCEEECCSSCCCEECTTT-TT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC--cChhHhcCcccCCEEECCCCcccccChhh-cc
Confidence 3445566677777777777775556667777777777777777765 45666777788888888888887776766 77
Q ss_pred CCCCcccccccccccccCcc
Q 041723 202 NLPNFTIIGSVHETLASSHI 221 (228)
Q Consensus 202 ~l~~L~~l~l~~n~~~~~~~ 221 (228)
.+++|++|++++|++++.+.
T Consensus 369 ~l~~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 369 GLPNLKELALDTNQLKSVPD 388 (455)
T ss_dssp TCTTCCEEECCSSCCSCCCT
T ss_pred ccccccEEECCCCccccCCH
Confidence 78888888888888877554
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=2.8e-25 Score=189.18 Aligned_cols=99 Identities=23% Similarity=0.178 Sum_probs=86.9
Q ss_pred ccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCcccccc
Q 041723 116 YLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLA 195 (228)
Q Consensus 116 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 195 (228)
.+.+..|..++.+++|++|++++|.+.+..|..+..+++|+.|++++|.+++ ..|..+..+++|++|++++|++++.+
T Consensus 310 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 310 EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA--LGDQSFLGLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc--cChhhccccccccEEECCCCccccCC
Confidence 3445667788999999999999999987778889999999999999999986 66888999999999999999999887
Q ss_pred CccccCCCCCcccccccccccc
Q 041723 196 GTTVNTNLPNFTIIGSVHETLA 217 (228)
Q Consensus 196 ~~~~~~~l~~L~~l~l~~n~~~ 217 (228)
+.. +..+++|++|++++|+++
T Consensus 388 ~~~-~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 388 DGI-FDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp TTT-TTTCTTCCEEECCSSCBC
T ss_pred HhH-hccCCcccEEEccCCCcc
Confidence 777 889999999996666654
No 13
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=5.8e-25 Score=193.71 Aligned_cols=98 Identities=18% Similarity=0.091 Sum_probs=55.2
Q ss_pred CCcCCcccccchhhhcccccccccccCCCC---h-HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS---L-ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
++++|+++.+.+.+|+++++|++|++++|. + |++|..+++|++|++++|++++..+.+|.++++|++|+ +++|.
T Consensus 58 dLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~--Ls~N~ 135 (635)
T 4g8a_A 58 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV--AVETN 135 (635)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE--CTTSC
T ss_pred EeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE--CCCCc
Confidence 455666666666666666666666666665 2 23455566666666666665554445555555555555 55555
Q ss_pred CCCCc--cccCCCCCcEEEeeCCcCC
Q 041723 78 ENFLP--SLGNLTKLNDLYLFGNDFS 101 (228)
Q Consensus 78 ~~~~p--~~~~l~~L~~L~l~~n~l~ 101 (228)
+..+| .++++++|++|++++|.++
T Consensus 136 l~~l~~~~~~~L~~L~~L~Ls~N~l~ 161 (635)
T 4g8a_A 136 LASLENFPIGHLKTLKELNVAHNLIQ 161 (635)
T ss_dssp CCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred CCCCChhhhhcCcccCeeccccCccc
Confidence 54444 3455555555555555443
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=2.3e-25 Score=191.03 Aligned_cols=215 Identities=20% Similarity=0.232 Sum_probs=125.0
Q ss_pred CCcCCcccccchhhhcccccccccccCCCC---hH-HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS---LA-NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
++++|.+..+.+..++.+++|++|++++|. +| ..+..+++|++|++++|.+.+..+..+..+++|++|+ +++|.
T Consensus 62 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~--l~~n~ 139 (477)
T 2id5_A 62 ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE--VGDND 139 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE--ECCTT
T ss_pred ECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE--CCCCc
Confidence 456677777777777777777777777776 33 2456677777777777777666666666666666666 66666
Q ss_pred CCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhcccc------------------------cccc-------ccccc--
Q 041723 78 ENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ------------------------LNYL-------TGEIL-- 122 (228)
Q Consensus 78 ~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~------------------------~~~l-------~~~~~-- 122 (228)
+..++ .+..+++|+.|++++|.+++..+..+..++. +..+ .+.+|
T Consensus 140 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 219 (477)
T 2id5_A 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219 (477)
T ss_dssp CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT
T ss_pred cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc
Confidence 64332 5566666666666666665322222332222 1111 11111
Q ss_pred ----------------------hhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCC
Q 041723 123 ----------------------VEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLES 180 (228)
Q Consensus 123 ----------------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~ 180 (228)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++ ..|..+..+++
T Consensus 220 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~ 297 (477)
T 2id5_A 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV--VEPYAFRGLNY 297 (477)
T ss_dssp TTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE--ECTTTBTTCTT
T ss_pred cccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce--ECHHHhcCccc
Confidence 234455556666666665554444445566666666666666654 44555666666
Q ss_pred CCEEEccCCccccccCccccCCCCCcccccccccccccCccccccC
Q 041723 181 LTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTK 226 (228)
Q Consensus 181 L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~ 226 (228)
|+.|++++|.+++..+.. +..+++|++|++++| ++.|+|+
T Consensus 298 L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~N-----~l~c~c~ 337 (477)
T 2id5_A 298 LRVLNVSGNQLTTLEESV-FHSVGNLETLILDSN-----PLACDCR 337 (477)
T ss_dssp CCEEECCSSCCSCCCGGG-BSCGGGCCEEECCSS-----CEECSGG
T ss_pred CCEEECCCCcCceeCHhH-cCCCcccCEEEccCC-----CccCccc
Confidence 666666666666655555 566666666664444 4455554
No 15
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=2.3e-25 Score=184.16 Aligned_cols=212 Identities=19% Similarity=0.117 Sum_probs=168.9
Q ss_pred CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
++++|.++.+.+..++.+++|++|++++|.+ |+.+..+++|++|++++|.+++..+..+..+++|++|+ +++|.
T Consensus 58 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~--L~~n~ 135 (353)
T 2z80_A 58 DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN--LLGNP 135 (353)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE--CTTCC
T ss_pred ECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE--CCCCC
Confidence 5678888888888899999999999999873 45788899999999999999876666788999999999 99999
Q ss_pred CCCCcc---ccCCCCCcEEEeeCCc-CCCCCCChhhccccc-------cccccccchhhhcCCCCCEEeccCCcccccCc
Q 041723 78 ENFLPS---LGNLTKLNDLYLFGND-FSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVP 146 (228)
Q Consensus 78 ~~~~p~---~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~~-------~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 146 (228)
+..+|. +..+++|++|++++|. +++..+..++.++.+ +.+.+..|..++.+++|++|++++|.+. .+|
T Consensus 136 l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~ 214 (353)
T 2z80_A 136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLL 214 (353)
T ss_dssp CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THH
T ss_pred CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cch
Confidence 977763 7789999999999984 654445667666663 3445666888888899999999999987 445
Q ss_pred cc-cccCCCCCEEEccCCccccCC-----------------------------CcchhhhcCCCCCEEEccCCccccccC
Q 041723 147 SS-IFELRNLRALDLSDNNLSGTG-----------------------------DLNMVLLNLESLTALVLSSNKLSLLAG 196 (228)
Q Consensus 147 ~~-~~~l~~L~~L~l~~n~~~~~~-----------------------------~~p~~~~~l~~L~~L~L~~n~l~~~~~ 196 (228)
.. +..+++|+.|++++|.+++.. .+|.++..+++|++|++++|+++..++
T Consensus 215 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~ 294 (353)
T 2z80_A 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD 294 (353)
T ss_dssp HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT
T ss_pred hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH
Confidence 43 456889999999999887521 145678889999999999999996655
Q ss_pred ccccCCCCCcccccccccccc
Q 041723 197 TTVNTNLPNFTIIGSVHETLA 217 (228)
Q Consensus 197 ~~~~~~l~~L~~l~l~~n~~~ 217 (228)
.. +.++++|+++++++|++.
T Consensus 295 ~~-~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 295 GI-FDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp TT-TTTCTTCCEEECCSSCBC
T ss_pred HH-HhcCCCCCEEEeeCCCcc
Confidence 55 689999999997766543
No 16
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.3e-24 Score=173.74 Aligned_cols=195 Identities=19% Similarity=0.199 Sum_probs=119.6
Q ss_pred cccccccCCCCh---H-HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEE
Q 041723 21 NAMKTLLQSPSL---A-NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLY 94 (228)
Q Consensus 21 ~l~~l~l~~~~l---~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~ 94 (228)
+++++++++|.+ + ..+..+++|++|++++|.+.+..+..+..+++|++|+ +++|.+..++ .+..+++|++|+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI--LTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEE--CTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEE--CCCCccCccChhhhcCCccccEEE
Confidence 344555555442 1 2444455555555555544443444444555555555 5555553332 344455555555
Q ss_pred eeCCcCCCCCCChhhcccccc-------cccc-ccchhhhcCCCCCEEeccCCcccccCccccccCCCCC----EEEccC
Q 041723 95 LFGNDFSGKVPDSLGDLLQLN-------YLTG-EILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLR----ALDLSD 162 (228)
Q Consensus 95 l~~n~l~~~~p~~~~~l~~~~-------~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~----~L~l~~ 162 (228)
+++|.+.+..+..++.++.+. .+.+ .+|..++.+++|++|++++|.+.+..+..+..+.+|+ .+++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 555554432222333333321 1112 2456678889999999999999866666777777776 899999
Q ss_pred CccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccC
Q 041723 163 NNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTK 226 (228)
Q Consensus 163 n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~ 226 (228)
|.+++ ++.......+|+.|++++|.+++.++.. +..+++|+++++++|. +.|+|+
T Consensus 187 n~l~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~N~-----~~c~c~ 241 (276)
T 2z62_A 187 NPMNF---IQPGAFKEIRLKELALDTNQLKSVPDGI-FDRLTSLQKIWLHTNP-----WDCSCP 241 (276)
T ss_dssp SCCCE---ECTTSSCSCCEEEEECCSSCCSCCCTTT-TTTCCSCCEEECCSSC-----BCCCTT
T ss_pred Ccccc---cCccccCCCcccEEECCCCceeecCHhH-hcccccccEEEccCCc-----ccccCC
Confidence 99984 4444445568999999999999887776 8899999999966554 556664
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=1.8e-24 Score=185.46 Aligned_cols=214 Identities=23% Similarity=0.177 Sum_probs=167.3
Q ss_pred CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
.+++|+++.+.+..++.+++|++|++++|.+ |..+.++++|++|++++|.+....+..|..+++|++|+ +++|.
T Consensus 38 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--Ls~n~ 115 (477)
T 2id5_A 38 DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD--ISENK 115 (477)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE--CTTSC
T ss_pred ECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE--CCCCc
Confidence 5678899999899999999999999999973 67899999999999999999877777789999999999 99999
Q ss_pred CCCC-c-cccCCCCCcEEEeeCCcCCCCCCChhhcccccc-------ccccccchhhhcCCCCCEEeccCCcccccCccc
Q 041723 78 ENFL-P-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLN-------YLTGEILVEIRKLTQLHILRLAENQLEGSVPSS 148 (228)
Q Consensus 78 ~~~~-p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~-------~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 148 (228)
+..+ | .+..+++|+.|++++|.+++..+..+..++++. .+.+..+..+..+++|+.|++++|.+.+..+..
T Consensus 116 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~ 195 (477)
T 2id5_A 116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195 (477)
T ss_dssp CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTC
T ss_pred cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhh
Confidence 9554 4 788999999999999999866677777766643 334444456777888888888888877554545
Q ss_pred cccCCCCCEEEcc------------------------CCccccCCCcc-hhhhcCCCCCEEEccCCccccccCccccCCC
Q 041723 149 IFELRNLRALDLS------------------------DNNLSGTGDLN-MVLLNLESLTALVLSSNKLSLLAGTTVNTNL 203 (228)
Q Consensus 149 ~~~l~~L~~L~l~------------------------~n~~~~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 203 (228)
+..+++|+.|+++ +|.++ .+| ..+..+++|+.|++++|.+++..+.. +..+
T Consensus 196 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l 271 (477)
T 2id5_A 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT---AVPYLAVRHLVYLRFLNLSYNPISTIEGSM-LHEL 271 (477)
T ss_dssp SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC---SCCHHHHTTCTTCCEEECCSSCCCEECTTS-CTTC
T ss_pred cccCcccceeeCCCCccccccCcccccCccccEEECcCCccc---ccCHHHhcCccccCeeECCCCcCCccChhh-cccc
Confidence 5555555555554 45555 334 45777888888888888888777777 7888
Q ss_pred CCcccccccccccccCcc
Q 041723 204 PNFTIIGSVHETLASSHI 221 (228)
Q Consensus 204 ~~L~~l~l~~n~~~~~~~ 221 (228)
++|++|++++|++++.+.
T Consensus 272 ~~L~~L~L~~n~l~~~~~ 289 (477)
T 2id5_A 272 LRLQEIQLVGGQLAVVEP 289 (477)
T ss_dssp TTCCEEECCSSCCSEECT
T ss_pred ccCCEEECCCCccceECH
Confidence 888888888888876543
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=3.2e-25 Score=196.62 Aligned_cols=178 Identities=21% Similarity=0.303 Sum_probs=117.8
Q ss_pred hHHHHhccCCCCeeecCCccCCCC-----------------cchhcc--CCcchHHHHHhhhhcCC-CCCc-cccCCCCC
Q 041723 32 LANLAEKLANLKVLHLGQVNTAST-----------------VPYASA--NLSSLFSLLSLIAYCKE-NFLP-SLGNLTKL 90 (228)
Q Consensus 32 l~~~~~~l~~L~~L~l~~n~~~~~-----------------~~~~~~--~l~~L~~L~~~l~~~~~-~~~p-~~~~l~~L 90 (228)
+|+.++++++|++|++++|.+++. +|..++ .+++|++|+ +++|.+ +.+| .++++++|
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~--L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE--VYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE--EECCTTCSSCCTTTTTCSSC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEE--ecCCcCCccChHHHhcCCCC
Confidence 455677777777777777777664 677766 777777777 777776 6666 77777777
Q ss_pred cEEEeeCCc-CCC-CCCChhhcc------ccc-------cccccccch--hhhcCCCCCEEeccCCcccccCccccccCC
Q 041723 91 NDLYLFGND-FSG-KVPDSLGDL------LQL-------NYLTGEILV--EIRKLTQLHILRLAENQLEGSVPSSIFELR 153 (228)
Q Consensus 91 ~~L~l~~n~-l~~-~~p~~~~~l------~~~-------~~l~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~ 153 (228)
++|++++|. ++| .+|..++.+ +++ +.+. .+|. .++.+++|++|++++|.+.+.+| .++.++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 777777776 766 567666655 342 2333 5666 67777777777777777776666 666666
Q ss_pred CCCEEEccCCccccCCCcchhhhcCCC-CCEEEccCCccccccCccccCCCC--Cccccccccccccc
Q 041723 154 NLRALDLSDNNLSGTGDLNMVLLNLES-LTALVLSSNKLSLLAGTTVNTNLP--NFTIIGSVHETLAS 218 (228)
Q Consensus 154 ~L~~L~l~~n~~~~~~~~p~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~l~--~L~~l~l~~n~~~~ 218 (228)
+|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|.. +..++ +|++|++++|++++
T Consensus 354 ~L~~L~L~~N~l~---~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~-~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 354 KLASLNLAYNQIT---EIPANFCGFTEQVENLSFAHNKLK-YIPNI-FDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp EESEEECCSSEEE---ECCTTSEEECTTCCEEECCSSCCS-SCCSC-CCTTCSSCEEEEECCSSCTTT
T ss_pred CCCEEECCCCccc---cccHhhhhhcccCcEEEccCCcCc-ccchh-hhhcccCccCEEECcCCcCCC
Confidence 7777777777666 45666666666 777777777666 33443 43332 56666666666654
No 19
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=8.2e-24 Score=168.77 Aligned_cols=179 Identities=23% Similarity=0.240 Sum_probs=124.1
Q ss_pred cccccccCCCCh---H-HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEE
Q 041723 21 NAMKTLLQSPSL---A-NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLY 94 (228)
Q Consensus 21 ~l~~l~l~~~~l---~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~ 94 (228)
++++|++++|.+ + ..+..+++|++|++++|.++...+..+..+++|++|+ +++|.+..+| .+..+++|+.|+
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~--l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW--VTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE--CCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE--CCCCcCCcCCHhHcccccCCCEEE
Confidence 455555555542 2 2455555555555555555544444445555555555 5555554444 445555555555
Q ss_pred eeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchh
Q 041723 95 LFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMV 174 (228)
Q Consensus 95 l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~ 174 (228)
+++|.++ +..+..++.+++|++|++++|.+.+..+..+..+++|+.|++++|.+++ ..+..
T Consensus 116 l~~n~l~-----------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~ 176 (270)
T 2o6q_A 116 LDRNQLK-----------------SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR--VPEGA 176 (270)
T ss_dssp CCSSCCC-----------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CCTTT
T ss_pred CCCCccC-----------------eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE--eChhH
Confidence 5555555 2223346788999999999999996555568899999999999999985 44556
Q ss_pred hhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccC
Q 041723 175 LLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTK 226 (228)
Q Consensus 175 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~ 226 (228)
+..+++|++|++++|++++.++.. +..+++|+.+++++ +++.|+|+
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~-----N~~~c~c~ 222 (270)
T 2o6q_A 177 FDKLTELKTLKLDNNQLKRVPEGA-FDSLEKLKMLQLQE-----NPWDCTCN 222 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCS-----SCBCCSSS
T ss_pred hccCCCcCEEECCCCcCCcCCHHH-hccccCCCEEEecC-----CCeeCCCc
Confidence 888999999999999999887777 88999999999554 46677774
No 20
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=6.3e-24 Score=173.94 Aligned_cols=207 Identities=15% Similarity=0.155 Sum_probs=120.5
Q ss_pred CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
.+++|+++.+.+..++.+++|++|++++|.+ |+.+..+++|++|++++|.++. +|..+. ++|++|+ +++|.
T Consensus 58 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~--l~~n~ 132 (330)
T 1xku_A 58 DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELR--VHENE 132 (330)
T ss_dssp ECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEE--CCSSC
T ss_pred ECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEE--CCCCc
Confidence 4567777777777778888888888887762 5667777777777777776653 232221 3444444 44444
Q ss_pred CCCCc--cccCCCCCcEEEeeCCcCCC--CCCChhhcccc----------------------------ccccccccchhh
Q 041723 78 ENFLP--SLGNLTKLNDLYLFGNDFSG--KVPDSLGDLLQ----------------------------LNYLTGEILVEI 125 (228)
Q Consensus 78 ~~~~p--~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~----------------------------~~~l~~~~~~~~ 125 (228)
+..++ .+..+++|++|++++|.+.. ..+..+..++. .+.+.+..|..+
T Consensus 133 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~ 212 (330)
T 1xku_A 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASL 212 (330)
T ss_dssp CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGG
T ss_pred ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHh
Confidence 43333 33444444444444444421 22223333222 223344445566
Q ss_pred hcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCC---
Q 041723 126 RKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTN--- 202 (228)
Q Consensus 126 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--- 202 (228)
..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++ .+|.++..+++|++|++++|++++..+.. ++.
T Consensus 213 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~~L~~L~l~~N~i~~~~~~~-f~~~~~ 288 (330)
T 1xku_A 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV---KVPGGLADHKYIQVVYLHNNNISAIGSND-FCPPGY 288 (330)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS---SCCTTTTTCSSCCEEECCSSCCCCCCTTS-SSCSSC
T ss_pred cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc---cCChhhccCCCcCEEECCCCcCCccChhh-cCCccc
Confidence 66666777777777666544455666667777777777666 46666666667777777777776655544 432
Q ss_pred ---CCCcccccccccccc
Q 041723 203 ---LPNFTIIGSVHETLA 217 (228)
Q Consensus 203 ---l~~L~~l~l~~n~~~ 217 (228)
.+.++.+++++|.+.
T Consensus 289 ~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 289 NTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CTTSCCCSEEECCSSSSC
T ss_pred ccccccccceEeecCccc
Confidence 255666666666654
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=3.5e-24 Score=179.29 Aligned_cols=109 Identities=16% Similarity=0.130 Sum_probs=65.9
Q ss_pred CcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723 3 HHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE 78 (228)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~ 78 (228)
++++.++.++...++.+++|+++++++|.+ +..+..+++|++|++++|.+.+..|..+..+++|++|+ +++|.+
T Consensus 52 l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--L~~n~l 129 (390)
T 3o6n_A 52 FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV--LERNDL 129 (390)
T ss_dssp EESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE--CCSSCC
T ss_pred ecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE--CCCCcc
Confidence 345555666666666666666666666652 23566666666666666666665566666666666666 666666
Q ss_pred CCCc--cccCCCCCcEEEeeCCcCCCCCCChhhcccc
Q 041723 79 NFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ 113 (228)
Q Consensus 79 ~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 113 (228)
..+| .+..+++|++|++++|.+++..+..++.+++
T Consensus 130 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 166 (390)
T 3o6n_A 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166 (390)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTT
T ss_pred CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCC
Confidence 5555 2456666666666666665444444444443
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.9e-24 Score=188.34 Aligned_cols=210 Identities=19% Similarity=0.174 Sum_probs=119.7
Q ss_pred CcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723 3 HHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE 78 (228)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~ 78 (228)
++++.+..+++..++.+++|++|++++|.+ |..+..+++|++|++++|.+.+..|..++.+++|++|+ +++|.+
T Consensus 58 l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--L~~n~l 135 (597)
T 3oja_B 58 FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV--LERNDL 135 (597)
T ss_dssp ESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE--CCSSCC
T ss_pred eeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE--eeCCCC
Confidence 345555666666666667777777776652 33666667777777777766666666666677777776 777766
Q ss_pred CCCc--cccCCCCCcEEEeeCCcCCCCCCChhhcccccccc-------ccc-----------------------------
Q 041723 79 NFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYL-------TGE----------------------------- 120 (228)
Q Consensus 79 ~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l-------~~~----------------------------- 120 (228)
..+| .+..+++|++|++++|.+++..|..++.++.+..+ .+.
T Consensus 136 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~ 215 (597)
T 3oja_B 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEE 215 (597)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSE
T ss_pred CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhhe
Confidence 5555 34666667777777766665555555554442211 110
Q ss_pred ------------------------------cchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCC
Q 041723 121 ------------------------------ILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGD 170 (228)
Q Consensus 121 ------------------------------~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 170 (228)
-+..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+++
T Consensus 216 L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--- 292 (597)
T 3oja_B 216 LDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--- 292 (597)
T ss_dssp EECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE---
T ss_pred eeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC---
Confidence 11234455556666666666655555555566666666666665552
Q ss_pred cchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccC
Q 041723 171 LNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASS 219 (228)
Q Consensus 171 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 219 (228)
+|..+..+++|+.|+|++|.+++. |.. +..+++|++|++++|.+++.
T Consensus 293 l~~~~~~l~~L~~L~Ls~N~l~~i-~~~-~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 293 LNLYGQPIPTLKVLDLSHNHLLHV-ERN-QPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp EECSSSCCTTCCEEECCSSCCCCC-GGG-HHHHTTCSEEECCSSCCCCC
T ss_pred CCcccccCCCCcEEECCCCCCCcc-Ccc-cccCCCCCEEECCCCCCCCc
Confidence 344444455555555555555532 333 34455555555555555443
No 23
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=5.4e-24 Score=171.67 Aligned_cols=197 Identities=23% Similarity=0.198 Sum_probs=118.1
Q ss_pred cccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEE
Q 041723 17 GTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDL 93 (228)
Q Consensus 17 ~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L 93 (228)
+.+++++.+++.++. +|..+. +.+++|++++|.+.+..+..+..+++|++|+ +++|.+..++....+++|++|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~--L~~n~l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN--LDRAELTKLQVDGTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEE--CTTSCCCEEECCSCCTTCCEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEE--CCCCccCcccCCCCCCcCCEE
Confidence 334444444444443 232222 3445555555554444444445555555555 555555444422444455555
Q ss_pred EeeCCcCCCCCCChhhccccc-------cccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccc
Q 041723 94 YLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLS 166 (228)
Q Consensus 94 ~l~~n~l~~~~p~~~~~l~~~-------~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 166 (228)
++++|.++ .+|..+..++.+ |.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 55555544 344433333321 1222223345677888999999999998655566788899999999999988
Q ss_pred cCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccCC
Q 041723 167 GTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTKI 227 (228)
Q Consensus 167 ~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~ 227 (228)
+ ..+..+..+++|++|++++|+++.. |.. +...++|+.++ +.++++.|.|.+
T Consensus 162 ~--l~~~~~~~l~~L~~L~L~~N~l~~i-p~~-~~~~~~L~~l~-----L~~Np~~C~c~~ 213 (290)
T 1p9a_G 162 E--LPAGLLNGLENLDTLLLQENSLYTI-PKG-FFGSHLLPFAF-----LHGNPWLCNCEI 213 (290)
T ss_dssp C--CCTTTTTTCTTCCEEECCSSCCCCC-CTT-TTTTCCCSEEE-----CCSCCBCCSGGG
T ss_pred c--cCHHHhcCcCCCCEEECCCCcCCcc-Chh-hcccccCCeEE-----eCCCCccCcCcc
Confidence 4 3334567889999999999999854 555 56677888888 555667788864
No 24
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=7.6e-24 Score=173.67 Aligned_cols=207 Identities=19% Similarity=0.202 Sum_probs=130.3
Q ss_pred CCcCCcccccchhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
.+++|.+..+.+..++.+++|++|++++|. .|+.+..+++|++|++++|.++. +|..+. ++|++|+ +++|.
T Consensus 60 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~--l~~n~ 134 (332)
T 2ft3_A 60 DLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELR--IHDNR 134 (332)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEE--CCSSC
T ss_pred ECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEE--CCCCc
Confidence 456777777777788888888888888886 25677788888888888887764 443333 6777777 77777
Q ss_pred CCCCc--cccCCCCCcEEEeeCCcCCC--CCCChhhcc--cc-------------------------ccccccccchhhh
Q 041723 78 ENFLP--SLGNLTKLNDLYLFGNDFSG--KVPDSLGDL--LQ-------------------------LNYLTGEILVEIR 126 (228)
Q Consensus 78 ~~~~p--~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l--~~-------------------------~~~l~~~~~~~~~ 126 (228)
+..+| .+..+++|+.|++++|.++. ..+..+..+ .. .+.+.+..+..+.
T Consensus 135 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~ 214 (332)
T 2ft3_A 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLL 214 (332)
T ss_dssp CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSST
T ss_pred cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhc
Confidence 76665 46777888888888777742 334333322 00 1222333344555
Q ss_pred cCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCC----
Q 041723 127 KLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTN---- 202 (228)
Q Consensus 127 ~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~---- 202 (228)
.+++|+.|++++|.+.+..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+.. ++.
T Consensus 215 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~~ 290 (332)
T 2ft3_A 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS---RVPAGLPDLKLLQVVYLHTNNITKVGVND-FCPVGFG 290 (332)
T ss_dssp TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC---BCCTTGGGCTTCCEEECCSSCCCBCCTTS-SSCSSCC
T ss_pred CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe---ecChhhhcCccCCEEECCCCCCCccChhH-ccccccc
Confidence 5666666666666666444445666666666666666665 45555666666666666666666554444 333
Q ss_pred --CCCcccccccccccc
Q 041723 203 --LPNFTIIGSVHETLA 217 (228)
Q Consensus 203 --l~~L~~l~l~~n~~~ 217 (228)
.+.++.+++++|.+.
T Consensus 291 ~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 291 VKRAYYNGISLFNNPVP 307 (332)
T ss_dssp SSSCCBSEEECCSSSSC
T ss_pred cccccccceEeecCccc
Confidence 244566666666554
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=2.4e-24 Score=189.56 Aligned_cols=210 Identities=20% Similarity=0.170 Sum_probs=116.9
Q ss_pred CCcCCcccccchhhhcccccccccccCCCC----hH-HHHhccCCCCeeecCCccCCCCc--chhccCCcchHHHHHhhh
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS----LA-NLAEKLANLKVLHLGQVNTASTV--PYASANLSSLFSLLSLIA 74 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~----l~-~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~~~l~ 74 (228)
++++|++..+.+..++.+++|+++++++|. +| ..+..+++|++|++++|.+.+.. +..+..+++|++|+ ++
T Consensus 307 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~--l~ 384 (606)
T 3t6q_A 307 VLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN--LS 384 (606)
T ss_dssp ECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEE--CC
T ss_pred ECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEE--CC
Confidence 456677777767777777777777777774 22 23666666777777666665543 45566666666666 66
Q ss_pred hcCCC-CCc-cccCCCCCcEEEeeCCcCCCCCCCh-hhccccc-------cccccccchhhhcCCCCCEEeccCCccccc
Q 041723 75 YCKEN-FLP-SLGNLTKLNDLYLFGNDFSGKVPDS-LGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGS 144 (228)
Q Consensus 75 ~~~~~-~~p-~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~~-------~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ 144 (228)
+|.+. ..| .+..+++|+.|++++|.+++..+.. +..++.+ +.+.+..|..++.+++|++|++++|.+.+.
T Consensus 385 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 464 (606)
T 3t6q_A 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464 (606)
T ss_dssp SCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGG
T ss_pred CCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcc
Confidence 66663 223 5556666666666666655433322 4444332 223334444555555555555555555431
Q ss_pred ---CccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccc
Q 041723 145 ---VPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLA 217 (228)
Q Consensus 145 ---~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~ 217 (228)
.+..+..+++|+.|++++|.+++ ..|..+..+++|++|++++|++++..|.. +.+++.| ++++++|+++
T Consensus 465 ~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 465 NIQKTNSLQTLGRLEILVLSFCDLSS--IDQHAFTSLKMMNHVDLSHNRLTSSSIEA-LSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp EECSSCGGGGCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCCGGGGGG-GTTCCSC-EEECCSSCCC
T ss_pred ccccchhhccCCCccEEECCCCccCc--cChhhhccccCCCEEECCCCccCcCChhH-hCccccc-EEECcCCccc
Confidence 12334555555555555555554 33445555555555555555555555544 5555555 5555555443
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=6.1e-24 Score=187.02 Aligned_cols=218 Identities=24% Similarity=0.175 Sum_probs=138.0
Q ss_pred CCcCCcccccchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE 78 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~ 78 (228)
.++++++..+.+..++.+++|+++++++|. +|+.+..+++|++|++++|.+.+..|..+..+++|++|+ +++|.+
T Consensus 260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--l~~n~~ 337 (606)
T 3t6q_A 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS--IKGNTK 337 (606)
T ss_dssp ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE--CCSCSS
T ss_pred EeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEE--CCCCCc
Confidence 345677777777778888888888888876 566777778888888888877766666777777777777 777766
Q ss_pred -CCCc--cccCCCCCcEEEeeCCcCCCCC--CChhhcccccc-------ccccccchh----------------------
Q 041723 79 -NFLP--SLGNLTKLNDLYLFGNDFSGKV--PDSLGDLLQLN-------YLTGEILVE---------------------- 124 (228)
Q Consensus 79 -~~~p--~~~~l~~L~~L~l~~n~l~~~~--p~~~~~l~~~~-------~l~~~~~~~---------------------- 124 (228)
..+| .+..+++|++|++++|.+++.. +..++.++.+. .+.+..|..
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 417 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence 3454 4666666666666666665322 33444433311 122222333
Q ss_pred ---hhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCC-CcchhhhcCCCCCEEEccCCccccccCcccc
Q 041723 125 ---IRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTG-DLNMVLLNLESLTALVLSSNKLSLLAGTTVN 200 (228)
Q Consensus 125 ---~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 200 (228)
++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++.. ..+..+..+++|++|++++|.+++..|.. +
T Consensus 418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~ 496 (606)
T 3t6q_A 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA-F 496 (606)
T ss_dssp CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT-T
T ss_pred chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh-h
Confidence 445555566666666555444555566666666666666665310 11234666677777777777777666666 7
Q ss_pred CCCCCcccccccccccccCccc
Q 041723 201 TNLPNFTIIGSVHETLASSHIF 222 (228)
Q Consensus 201 ~~l~~L~~l~l~~n~~~~~~~~ 222 (228)
..+++|++|++++|++++.+..
T Consensus 497 ~~l~~L~~L~Ls~N~l~~~~~~ 518 (606)
T 3t6q_A 497 TSLKMMNHVDLSHNRLTSSSIE 518 (606)
T ss_dssp TTCTTCCEEECCSSCCCGGGGG
T ss_pred ccccCCCEEECCCCccCcCChh
Confidence 7777777777777777765443
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=2.2e-23 Score=170.70 Aligned_cols=206 Identities=20% Similarity=0.186 Sum_probs=149.2
Q ss_pred CCcCCcccccchhhhcccccccccccCCCCh---H----------------------HHHhccCCCCeeecCCccCCC--
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL---A----------------------NLAEKLANLKVLHLGQVNTAS-- 54 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l---~----------------------~~~~~l~~L~~L~l~~n~~~~-- 54 (228)
++++|++..+.+..++.+++|++|++++|.+ | ..+..+++|++|++++|.+..
T Consensus 82 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 161 (330)
T 1xku_A 82 ILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 161 (330)
T ss_dssp ECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred ECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC
Confidence 4677888888888888888888888888752 2 235556666666666665542
Q ss_pred CcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccc-------cccccccchhhh
Q 041723 55 TVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIR 126 (228)
Q Consensus 55 ~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~-------~~l~~~~~~~~~ 126 (228)
..+..+..+++|++|+ +++|.+..+| .+. ++|+.|++++|.+++..|..+..++.+ +.+.+..+..+.
T Consensus 162 ~~~~~~~~l~~L~~L~--l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 162 IENGAFQGMKKLSYIR--IADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp BCTTGGGGCTTCCEEE--CCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred cChhhccCCCCcCEEE--CCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 3455566666666666 6666666666 332 677777777777775556677766663 344555666788
Q ss_pred cCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhh------cCCCCCEEEccCCcccc--ccCcc
Q 041723 127 KLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLL------NLESLTALVLSSNKLSL--LAGTT 198 (228)
Q Consensus 127 ~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~------~l~~L~~L~L~~n~l~~--~~~~~ 198 (228)
.+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++ ..+..+. ....++.+++++|++.. ..|..
T Consensus 238 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~--~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~ 314 (330)
T 1xku_A 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA--IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314 (330)
T ss_dssp GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC--CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGG
T ss_pred CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc--cChhhcCCcccccccccccceEeecCcccccccCccc
Confidence 9999999999999998 788889999999999999999995 3333342 24789999999999964 44566
Q ss_pred ccCCCCCcccccccccc
Q 041723 199 VNTNLPNFTIIGSVHET 215 (228)
Q Consensus 199 ~~~~l~~L~~l~l~~n~ 215 (228)
+..+..++.+++++|+
T Consensus 315 -f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 315 -FRCVYVRAAVQLGNYK 330 (330)
T ss_dssp -GTTCCCGGGEEC----
T ss_pred -cccccceeEEEecccC
Confidence 8889999999999885
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=4.3e-24 Score=173.08 Aligned_cols=210 Identities=21% Similarity=0.205 Sum_probs=173.6
Q ss_pred cCCcccccchhhhcccccccccccCCCC---hHH-HHhccCCCCeeecCCccCCCC--cchhccCCcchHHHHHhhhhcC
Q 041723 4 HGTRKKKIATAAYGTASNAMKTLLQSPS---LAN-LAEKLANLKVLHLGQVNTAST--VPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~-~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
+++.++.++.. + .++++++++++|. +|+ .+..+++|++|++++|.+... .+..+..+++|++|+ +++|.
T Consensus 15 ~~~~l~~ip~~-~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~--Ls~n~ 89 (306)
T 2z66_A 15 NSKGLTSVPTG-I--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD--LSFNG 89 (306)
T ss_dssp CSSCCSSCCSC-C--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE--CCSCS
T ss_pred CCCCcccCCCC-C--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE--CCCCc
Confidence 34455555542 2 2589999999997 454 478999999999999998743 367788899999999 99999
Q ss_pred CCCCc-cccCCCCCcEEEeeCCcCCCCCC-Chhhcccccc-------ccccccchhhhcCCCCCEEeccCCcccc-cCcc
Q 041723 78 ENFLP-SLGNLTKLNDLYLFGNDFSGKVP-DSLGDLLQLN-------YLTGEILVEIRKLTQLHILRLAENQLEG-SVPS 147 (228)
Q Consensus 78 ~~~~p-~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~~~-------~l~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~ 147 (228)
+..+| .+..+++|++|++++|.+++..+ ..+..++.+. .+.+..+..+..+++|++|++++|.+.+ ..|.
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 169 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence 98888 88999999999999999984333 4566666643 3445667778899999999999999985 4688
Q ss_pred ccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCcc
Q 041723 148 SIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHI 221 (228)
Q Consensus 148 ~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 221 (228)
.+..+++|+.|++++|.+++ ..|..+..+++|++|++++|.+++..+.. +..+++|++|++++|++++...
T Consensus 170 ~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQLEQ--LSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp CCTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTSCCSBCCSGG-GTTCTTCCEEECTTSCCCBCSS
T ss_pred HHhhCcCCCEEECCCCCcCC--cCHHHhcCCCCCCEEECCCCccCccChhh-ccCcccCCEeECCCCCCcccCH
Confidence 89999999999999999996 56788999999999999999999887777 8899999999999999976543
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=4.1e-23 Score=184.10 Aligned_cols=213 Identities=21% Similarity=0.189 Sum_probs=153.9
Q ss_pred CCcCCcccccchhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
.+++|.++.+.+..++.+++|++|++++|. .|+.+.++++|++|++++|.+.+..+.+|..+++|++|+ +++|.
T Consensus 31 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~--L~~n~ 108 (680)
T 1ziw_A 31 NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH--LMSNS 108 (680)
T ss_dssp ECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE--CCSSC
T ss_pred ECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE--CCCCc
Confidence 567888888888889999999999999887 367888999999999999988876666889999999999 99999
Q ss_pred CCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhccccccc-------cccccchhhh--cCCCCCEEeccCCcccccCc
Q 041723 78 ENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNY-------LTGEILVEIR--KLTQLHILRLAENQLEGSVP 146 (228)
Q Consensus 78 ~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~-------l~~~~~~~~~--~l~~L~~L~ls~n~l~~~~~ 146 (228)
+..++ .++.+++|++|++++|.+++..|..++.++++.. +.+..+..+. .+++|+.|++++|.+.+..|
T Consensus 109 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence 96665 7888999999999999988777776766666333 3344444443 34677888888887775555
Q ss_pred cccccC---------------------------CCCCEEEccCCccccCCCcchhhhcCCC--CCEEEccCCccccccCc
Q 041723 147 SSIFEL---------------------------RNLRALDLSDNNLSGTGDLNMVLLNLES--LTALVLSSNKLSLLAGT 197 (228)
Q Consensus 147 ~~~~~l---------------------------~~L~~L~l~~n~~~~~~~~p~~~~~l~~--L~~L~L~~n~l~~~~~~ 197 (228)
..+..+ ++|+.|++++|.+++ ..|.++..+.. |++|++++|.+++..+.
T Consensus 189 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~--~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~ 266 (680)
T 1ziw_A 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST--TSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266 (680)
T ss_dssp TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE--ECTTTTGGGGGSCCCEEECTTSCCCEECTT
T ss_pred hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc--cChhHhhccCcCCCCEEECCCCCcCccCcc
Confidence 444433 345555555665554 44555555543 77777777776666555
Q ss_pred cccCCCCCcccccccccccccC
Q 041723 198 TVNTNLPNFTIIGSVHETLASS 219 (228)
Q Consensus 198 ~~~~~l~~L~~l~l~~n~~~~~ 219 (228)
. +.++++|++|++++|.++..
T Consensus 267 ~-~~~l~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 267 S-FAWLPQLEYFFLEYNNIQHL 287 (680)
T ss_dssp T-TTTCTTCCEEECCSCCBSEE
T ss_pred c-ccCcccccEeeCCCCccCcc
Confidence 5 66667777777776666543
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=2.1e-23 Score=185.96 Aligned_cols=213 Identities=23% Similarity=0.212 Sum_probs=162.4
Q ss_pred CcCCcccccchhhhcccccccccccCCCCh----H-HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 3 HHGTRKKKIATAAYGTASNAMKTLLQSPSL----A-NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
+++|++..+.+..++.+++|+++++++|.+ | ..+..+++|++|++++|.+.+..+..+..+++|+.|+ +++|.
T Consensus 388 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~--l~~n~ 465 (680)
T 1ziw_A 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM--LRRVA 465 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE--CTTSC
T ss_pred CCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch--hcccc
Confidence 466778888888888888999999998873 3 5778888999999999888877788888888899888 88888
Q ss_pred C---CCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccccc-------cccc----cc----hhhhcCCCCCEEeccC
Q 041723 78 E---NFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNY-------LTGE----IL----VEIRKLTQLHILRLAE 138 (228)
Q Consensus 78 ~---~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~-------l~~~----~~----~~~~~l~~L~~L~ls~ 138 (228)
+ +.+| .+..+++|++|++++|.+++..+..++.++.+.. +.+. +| ..++.+++|+.|++++
T Consensus 466 l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 545 (680)
T 1ziw_A 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545 (680)
T ss_dssp CBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS
T ss_pred ccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC
Confidence 7 4566 7888899999999999988555555666665332 2221 11 2366778888888888
Q ss_pred CcccccCc-cccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccC-CCCCccccccccccc
Q 041723 139 NQLEGSVP-SSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNT-NLPNFTIIGSVHETL 216 (228)
Q Consensus 139 n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~l~~L~~l~l~~n~~ 216 (228)
|.+. .+| ..|..+++|+.|++++|.+++ ..+..+..+++|+.|++++|++++..+.. +. .+++|++++ +
T Consensus 546 N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~~~~~L~~l~-----l 616 (680)
T 1ziw_A 546 NGFD-EIPVEVFKDLFELKIIDLGLNNLNT--LPASVFNNQVSLKSLNLQKNLITSVEKKV-FGPAFRNLTELD-----M 616 (680)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECTTSCCCBCCHHH-HHHHHTTCSEEE-----C
T ss_pred CCCC-CCCHHHcccccCcceeECCCCCCCc--CCHhHhCCCCCCCEEECCCCcCCccChhH-hcccccccCEEE-----c
Confidence 8888 444 457888888888888888884 33445677888888888888888776665 55 677888888 5
Q ss_pred ccCccccccC
Q 041723 217 ASSHIFCTTK 226 (228)
Q Consensus 217 ~~~~~~~~~~ 226 (228)
.++++.|+|+
T Consensus 617 ~~N~~~c~c~ 626 (680)
T 1ziw_A 617 RFNPFDCTCE 626 (680)
T ss_dssp TTCCCCBCCC
T ss_pred cCCCcccCCc
Confidence 6677888887
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=1.4e-24 Score=192.45 Aligned_cols=199 Identities=18% Similarity=0.238 Sum_probs=120.5
Q ss_pred chhhhc--ccccccccccCCCC----hHHHHhccCCCCeeecCCcc-CCC-CcchhccCC------cchHHHHHhhhhcC
Q 041723 12 ATAAYG--TASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVN-TAS-TVPYASANL------SSLFSLLSLIAYCK 77 (228)
Q Consensus 12 ~~~~~~--~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~l------~~L~~L~~~l~~~~ 77 (228)
.|..++ .+++|++|++++|. +|+.+.++++|++|++++|+ +++ .+|..+..+ ++|++|+ +++|.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~--L~~n~ 316 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY--IGYNN 316 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEE--CCSSC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEE--CCCCc
Confidence 455666 77777777777775 56777777777777777776 666 667666665 7777777 77777
Q ss_pred CCCCcc---ccCCCCCcEEEeeCCcCCCCCCChhhccccccccc------cccchhhhcCCC-CCEEeccCCcccccCcc
Q 041723 78 ENFLPS---LGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT------GEILVEIRKLTQ-LHILRLAENQLEGSVPS 147 (228)
Q Consensus 78 ~~~~p~---~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~------~~~~~~~~~l~~-L~~L~ls~n~l~~~~~~ 147 (228)
+..+|. ++.+++|++|++++|.++|.+| .++.++++..+. ..+|..++.+++ |++|++++|.+. .+|.
T Consensus 317 l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 766664 6677777777777777776676 666555533221 155666666666 777777766666 5555
Q ss_pred ccccCC--CCCEEEccCCccccCCCcchhhh-------cCCCCCEEEccCCccccccCccccCCCCCcccccccccccc
Q 041723 148 SIFELR--NLRALDLSDNNLSGTGDLNMVLL-------NLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLA 217 (228)
Q Consensus 148 ~~~~l~--~L~~L~l~~n~~~~~~~~p~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~ 217 (228)
.+..+. +|+.|++++|.+++ .+|..+. .+.+|++|++++|.+++.++.. +..+++|++|++++|+++
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGS--VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL-FSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTT--TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHH-HHTTCCCSEEECCSSCCS
T ss_pred hhhhcccCccCEEECcCCcCCC--cchhhhcccccccccCCCCCEEECcCCccCcCCHHH-HccCCCCCEEECCCCCCC
Confidence 544433 55566666555554 3444343 3344555555555554332222 333444444444444444
No 32
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=4.3e-23 Score=175.41 Aligned_cols=196 Identities=22% Similarity=0.233 Sum_probs=169.8
Q ss_pred ccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEE
Q 041723 20 SNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDL 93 (228)
Q Consensus 20 ~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L 93 (228)
.+++.|++++|.+ ++.+..+++|++|++++|.+....+..|.++++|++|+ +++|.+..+| .+..+++|++|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~--L~~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE--LFDNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEE--CCSSCCSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEE--CCCCcCCeeCHhHhhccccCcee
Confidence 4789999999983 46899999999999999999988889999999999999 9999998777 68999999999
Q ss_pred EeeCCcCCCCCCChhhcccccccc--------ccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCcc
Q 041723 94 YLFGNDFSGKVPDSLGDLLQLNYL--------TGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNL 165 (228)
Q Consensus 94 ~l~~n~l~~~~p~~~~~l~~~~~l--------~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 165 (228)
++++|.+++..+..+..++++..+ ....+..+..+++|+.|++++|.++ .+| .+..+++|+.|++++|.+
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCC
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCcc
Confidence 999999985444566666664433 2233346788999999999999998 566 488999999999999999
Q ss_pred ccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723 166 SGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF 222 (228)
Q Consensus 166 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 222 (228)
++ ..|..+.++++|+.|++++|.+++..+.. +.++++|++|++++|+++..+..
T Consensus 220 ~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~ 273 (440)
T 3zyj_A 220 SA--IRPGSFQGLMHLQKLWMIQSQIQVIERNA-FDNLQSLVEINLAHNNLTLLPHD 273 (440)
T ss_dssp CE--ECTTTTTTCTTCCEEECTTCCCCEECTTS-STTCTTCCEEECTTSCCCCCCTT
T ss_pred Cc--cChhhhccCccCCEEECCCCceeEEChhh-hcCCCCCCEEECCCCCCCccChh
Confidence 97 66888999999999999999999988888 99999999999999999986654
No 33
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=6.9e-24 Score=192.88 Aligned_cols=177 Identities=18% Similarity=0.237 Sum_probs=135.0
Q ss_pred hHHHHhccCCCCeeecCCccCCC-----------------Ccchhcc--CCcchHHHHHhhhhcCC-CCCc-cccCCCCC
Q 041723 32 LANLAEKLANLKVLHLGQVNTAS-----------------TVPYASA--NLSSLFSLLSLIAYCKE-NFLP-SLGNLTKL 90 (228)
Q Consensus 32 l~~~~~~l~~L~~L~l~~n~~~~-----------------~~~~~~~--~l~~L~~L~~~l~~~~~-~~~p-~~~~l~~L 90 (228)
+|+.++++++|++|++++|.+++ .+|..++ .+++|++|+ +++|.+ +.+| .++++++|
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~--Ls~N~l~~~iP~~l~~L~~L 517 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE--LYNCPNMTQLPDFLYDLPEL 517 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE--EESCTTCCSCCGGGGGCSSC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE--CcCCCCCccChHHHhCCCCC
Confidence 56677788888888888888877 2777766 888888888 888887 7777 78888888
Q ss_pred cEEEeeCCc-CCC-CCCChhhccc-------c-------ccccccccch--hhhcCCCCCEEeccCCcccccCccccccC
Q 041723 91 NDLYLFGND-FSG-KVPDSLGDLL-------Q-------LNYLTGEILV--EIRKLTQLHILRLAENQLEGSVPSSIFEL 152 (228)
Q Consensus 91 ~~L~l~~n~-l~~-~~p~~~~~l~-------~-------~~~l~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~l 152 (228)
+.|++++|. +++ .+|..++.++ + .+.+. .+|. .++.+++|+.|++++|.+. .+| .++.+
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L 594 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTN 594 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCC
Confidence 888888887 776 6777777665 3 33344 6777 7888888888888888887 677 77888
Q ss_pred CCCCEEEccCCccccCCCcchhhhcCCC-CCEEEccCCccccccCccccCCCCC--ccccccccccccc
Q 041723 153 RNLRALDLSDNNLSGTGDLNMVLLNLES-LTALVLSSNKLSLLAGTTVNTNLPN--FTIIGSVHETLAS 218 (228)
Q Consensus 153 ~~L~~L~l~~n~~~~~~~~p~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~l~~--L~~l~l~~n~~~~ 218 (228)
++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|.. +..++. |+.|++++|++++
T Consensus 595 ~~L~~L~Ls~N~l~---~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~-~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE---EIPEDFCAFTDQVEGLGFSHNKLK-YIPNI-FNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp SEESEEECCSSCCS---CCCTTSCEECTTCCEEECCSSCCC-SCCSC-CCTTCSSCEEEEECCSSCTTT
T ss_pred CcceEEECcCCccc---cchHHHhhccccCCEEECcCCCCC-cCchh-hhccccCCCCEEECcCCcCCC
Confidence 88888888888887 57777777877 888888888887 44554 555433 7777777777765
No 34
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=5.5e-23 Score=165.03 Aligned_cols=192 Identities=19% Similarity=0.132 Sum_probs=160.0
Q ss_pred cccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCC-c-cccCCCCCcEEEeeC
Q 041723 23 MKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFL-P-SLGNLTKLNDLYLFG 97 (228)
Q Consensus 23 ~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~-p-~~~~l~~L~~L~l~~ 97 (228)
+.++..++. +|..+ .+++++|++++|.+.+..+..+..+++|++|+ +++|.+..+ | .+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~--l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILW--LHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEE--CCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEE--CCCCccceeCHhhcCCccCCCEEeCCC
Confidence 345555554 45433 46999999999999987778899999999999 999999666 5 889999999999999
Q ss_pred Cc-CCCCCCChhhcccccc-------ccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCC
Q 041723 98 ND-FSGKVPDSLGDLLQLN-------YLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTG 169 (228)
Q Consensus 98 n~-l~~~~p~~~~~l~~~~-------~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 169 (228)
|. ++...|..+..++++. .+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-- 167 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-- 167 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE--
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc--
Confidence 97 7755577777776643 4455667778899999999999999996555668999999999999999985
Q ss_pred CcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCcc
Q 041723 170 DLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHI 221 (228)
Q Consensus 170 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 221 (228)
..+..+..+++|++|++++|.+++..+.. +..+++|++|++++|++++.+.
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCH
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhH-ccCcccccEeeCCCCcCCcCCH
Confidence 34446889999999999999999988888 9999999999999999998664
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=6.4e-23 Score=171.62 Aligned_cols=210 Identities=20% Similarity=0.185 Sum_probs=140.9
Q ss_pred CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
.++++.+..+.+..++.+++|++|++++|.+ |..+..+++|++|++++|.+....+..+..+++|++|+ +++|.
T Consensus 75 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~--L~~n~ 152 (390)
T 3o6n_A 75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS--MSNNN 152 (390)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE--CCSSC
T ss_pred ECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE--CCCCc
Confidence 4678888888888899999999999999873 45688899999999999988865556678899999999 99999
Q ss_pred CCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhcccc------------------------------------------
Q 041723 78 ENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ------------------------------------------ 113 (228)
Q Consensus 78 ~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~------------------------------------------ 113 (228)
+..++ .+..+++|++|++++|.+++.-...+..+..
T Consensus 153 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ 232 (390)
T 3o6n_A 153 LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK 232 (390)
T ss_dssp CCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEE
T ss_pred cCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEE
Confidence 86554 6888899999999998887421111111111
Q ss_pred --ccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCcc
Q 041723 114 --LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKL 191 (228)
Q Consensus 114 --~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l 191 (228)
.+.+.+ +..++.+++|++|++++|.+.+..|..+..+++|+.|++++|.++ .+|..+..+++|++|++++|++
T Consensus 233 l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~l~~L~~L~L~~n~l 307 (390)
T 3o6n_A 233 LQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV---ALNLYGQPIPTLKVLDLSHNHL 307 (390)
T ss_dssp CCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC---EEECSSSCCTTCCEEECCSSCC
T ss_pred CCCCCCcc--cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc---ccCcccCCCCCCCEEECCCCcc
Confidence 011111 134556667777777777776555666666677777777776666 3444445556666666666666
Q ss_pred ccccCccccCCCCCcccccccccccccCc
Q 041723 192 SLLAGTTVNTNLPNFTIIGSVHETLASSH 220 (228)
Q Consensus 192 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 220 (228)
++. |.. +..+++|++|++++|++++.+
T Consensus 308 ~~~-~~~-~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 308 LHV-ERN-QPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp CCC-GGG-HHHHTTCSEEECCSSCCCCCC
T ss_pred eec-Ccc-ccccCcCCEEECCCCccceeC
Confidence 543 333 444555566666655555443
No 36
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=6.2e-23 Score=174.99 Aligned_cols=196 Identities=22% Similarity=0.222 Sum_probs=169.4
Q ss_pred ccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEE
Q 041723 20 SNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDL 93 (228)
Q Consensus 20 ~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L 93 (228)
+++++|++++|.+ |+.+..+++|++|++++|.+.+..+..|.++++|++|+ +++|.+..+| .+..+++|++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~--L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE--LFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE--CCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE--CCCCcCCccChhhhcccCCCCEE
Confidence 4899999999983 57899999999999999999988889999999999999 9999997777 68899999999
Q ss_pred EeeCCcCCCCCCChhhcccccccc--------ccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCcc
Q 041723 94 YLFGNDFSGKVPDSLGDLLQLNYL--------TGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNL 165 (228)
Q Consensus 94 ~l~~n~l~~~~p~~~~~l~~~~~l--------~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 165 (228)
++++|.+++..+..+..++++..+ ....+..+..+++|+.|++++|.++ .+| .+..+++|+.|++++|.+
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCC
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcC
Confidence 999999984444566666664433 2223345788999999999999998 455 488999999999999999
Q ss_pred ccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723 166 SGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF 222 (228)
Q Consensus 166 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 222 (228)
++ ..|..+.++++|+.|++++|.+++..+.. +..+++|+.|++++|+++..+..
T Consensus 231 ~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~ 284 (452)
T 3zyi_A 231 PE--IRPGSFHGLSSLKKLWVMNSQVSLIERNA-FDGLASLVELNLAHNNLSSLPHD 284 (452)
T ss_dssp SE--ECGGGGTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCTT
T ss_pred cc--cCcccccCccCCCEEEeCCCcCceECHHH-hcCCCCCCEEECCCCcCCccChH
Confidence 97 66888999999999999999999988888 99999999999999999976643
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=3.2e-23 Score=179.40 Aligned_cols=212 Identities=17% Similarity=0.148 Sum_probs=146.0
Q ss_pred CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
.+++|++..+.+..++.+++|++|++++|.+ |+.+..+++|++||+++|.++. +|.. .+++|++|+ +++|.
T Consensus 27 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~--L~~N~ 101 (520)
T 2z7x_B 27 NISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLD--LSFNA 101 (520)
T ss_dssp ECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEE--CCSSC
T ss_pred ECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEe--ccCCc
Confidence 4677888888888888888888888888872 6778888888888888888874 5544 778888888 88888
Q ss_pred CCC--Cc-cccCCCCCcEEEeeCCcCC-------------------------CCCCChhhccc-----------------
Q 041723 78 ENF--LP-SLGNLTKLNDLYLFGNDFS-------------------------GKVPDSLGDLL----------------- 112 (228)
Q Consensus 78 ~~~--~p-~~~~l~~L~~L~l~~n~l~-------------------------~~~p~~~~~l~----------------- 112 (228)
+.. +| .++.+++|++|++++|.++ +..|..+..+.
T Consensus 102 l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~ 181 (520)
T 2z7x_B 102 FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFI 181 (520)
T ss_dssp CSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCC
T ss_pred cccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhh
Confidence 843 55 7777777777777777654 22333333321
Q ss_pred ------------------------------------------------------------------c-------cccccc
Q 041723 113 ------------------------------------------------------------------Q-------LNYLTG 119 (228)
Q Consensus 113 ------------------------------------------------------------------~-------~~~l~~ 119 (228)
. .+.+.+
T Consensus 182 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 261 (520)
T 2z7x_B 182 LDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQG 261 (520)
T ss_dssp CCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEES
T ss_pred hhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccC
Confidence 0 011112
Q ss_pred ccchhh-----------------------------------------------------hcCCCCCEEeccCCcccccCc
Q 041723 120 EILVEI-----------------------------------------------------RKLTQLHILRLAENQLEGSVP 146 (228)
Q Consensus 120 ~~~~~~-----------------------------------------------------~~l~~L~~L~ls~n~l~~~~~ 146 (228)
.+|..+ ..+++|++|++++|.+.+..|
T Consensus 262 ~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 341 (520)
T 2z7x_B 262 QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341 (520)
T ss_dssp CCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTT
T ss_pred ccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhh
Confidence 333322 456677778888888776667
Q ss_pred cccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccC-ccccCCCCCcccccccccccccC
Q 041723 147 SSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAG-TTVNTNLPNFTIIGSVHETLASS 219 (228)
Q Consensus 147 ~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~l~l~~n~~~~~ 219 (228)
..++.+++|+.|++++|.+++...+|..+..+++|++|++++|.+++.+| .. +..+++|++|++++|++++.
T Consensus 342 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~-~~~l~~L~~L~Ls~N~l~~~ 414 (520)
T 2z7x_B 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD-CSWTKSLLSLNMSSNILTDT 414 (520)
T ss_dssp TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS-CCCCTTCCEEECCSSCCCGG
T ss_pred hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch-hccCccCCEEECcCCCCCcc
Confidence 77778888888888888877422345667778888888888888877333 33 66677777777777777543
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=7.3e-23 Score=167.79 Aligned_cols=206 Identities=17% Similarity=0.119 Sum_probs=152.1
Q ss_pred CCcCCcccccchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE 78 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~ 78 (228)
++++|++..+.+..++.+++|++|++++|. +|..+. ++|++|++++|.+.+..+..+..+++|++|+ +++|.+
T Consensus 84 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~--l~~n~l 159 (332)
T 2ft3_A 84 VLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIE--MGGNPL 159 (332)
T ss_dssp ECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEE--CCSCCC
T ss_pred ECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEE--CCCCcc
Confidence 567888888888999999999999999987 344333 5777777777777665556666677666666 666666
Q ss_pred C---CCc-cccCC--------------------CCCcEEEeeCCcCCCCCCChhhccccc-------cccccccchhhhc
Q 041723 79 N---FLP-SLGNL--------------------TKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRK 127 (228)
Q Consensus 79 ~---~~p-~~~~l--------------------~~L~~L~l~~n~l~~~~p~~~~~l~~~-------~~l~~~~~~~~~~ 127 (228)
. ..+ .+..+ ++|+.|++++|.+++..+..+..++.+ +.+.+..+..+..
T Consensus 160 ~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 239 (332)
T 2ft3_A 160 ENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239 (332)
T ss_dssp BGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred ccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence 2 222 33222 567777888888875555667766663 3445666668899
Q ss_pred CCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhc------CCCCCEEEccCCccc--cccCccc
Q 041723 128 LTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLN------LESLTALVLSSNKLS--LLAGTTV 199 (228)
Q Consensus 128 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~------l~~L~~L~L~~n~l~--~~~~~~~ 199 (228)
+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++ ..+..+.. ...++.+++++|++. +..+..
T Consensus 240 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~--~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~- 315 (332)
T 2ft3_A 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK--VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT- 315 (332)
T ss_dssp CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB--CCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGG-
T ss_pred CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc--cChhHccccccccccccccceEeecCcccccccCccc-
Confidence 999999999999999 788889999999999999999985 33333433 467899999999997 556666
Q ss_pred cCCCCCcccccccccc
Q 041723 200 NTNLPNFTIIGSVHET 215 (228)
Q Consensus 200 ~~~l~~L~~l~l~~n~ 215 (228)
+..+++|+.+++++|+
T Consensus 316 ~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 316 FRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GTTBCCSTTEEC----
T ss_pred ccccchhhhhhccccc
Confidence 8899999999998875
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=5.8e-23 Score=187.43 Aligned_cols=214 Identities=21% Similarity=0.218 Sum_probs=121.6
Q ss_pred CCcCCcccccchhhhcccccccccccCCCC----h-HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhc
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS----L-ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYC 76 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~----l-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~ 76 (228)
++++|.++.+.+..++.+++|++|++++|. + |+++.++++|++|++++|.+.+..|..|..+++|++|+ +++|
T Consensus 30 dLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~--Ls~n 107 (844)
T 3j0a_A 30 LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR--LYFC 107 (844)
T ss_dssp EEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE--CTTC
T ss_pred ECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee--CcCC
Confidence 455666776666666777777777776663 2 45566666666666666666665566666666666666 6666
Q ss_pred CCC-CCc-c--ccCCCCCcEEEeeCCcCCCCCC-Chhhccccccc-------cccccchhh-------------------
Q 041723 77 KEN-FLP-S--LGNLTKLNDLYLFGNDFSGKVP-DSLGDLLQLNY-------LTGEILVEI------------------- 125 (228)
Q Consensus 77 ~~~-~~p-~--~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~~~~-------l~~~~~~~~------------------- 125 (228)
.+. .+| . ++.+++|++|++++|.+++..+ ..++.++++.. +.+..+..+
T Consensus 108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187 (844)
T ss_dssp CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC
T ss_pred CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccc
Confidence 662 233 2 5556666666666666553322 23444433111 111111111
Q ss_pred -------hc--------------------------------------------------------------------CCC
Q 041723 126 -------RK--------------------------------------------------------------------LTQ 130 (228)
Q Consensus 126 -------~~--------------------------------------------------------------------l~~ 130 (228)
+. .++
T Consensus 188 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~ 267 (844)
T 3j0a_A 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS 267 (844)
T ss_dssp CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSC
T ss_pred cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCC
Confidence 00 134
Q ss_pred CCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccc
Q 041723 131 LHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIG 210 (228)
Q Consensus 131 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~ 210 (228)
|+.|++++|.+.+..+..+..+++|+.|++++|.+++ ..|..+.++++|++|++++|.+++..+.. +..+++|++|+
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~ 344 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK--IADEAFYGLDNLQVLNLSYNLLGELYSSN-FYGLPKVAYID 344 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE--ECTTTTTTCSSCCEEEEESCCCSCCCSCS-CSSCTTCCEEE
T ss_pred ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC--CChHHhcCCCCCCEEECCCCCCCccCHHH-hcCCCCCCEEE
Confidence 5555555555544444555666666666666666664 44555666666777777766666665555 66666666666
Q ss_pred ccccccccCc
Q 041723 211 SVHETLASSH 220 (228)
Q Consensus 211 l~~n~~~~~~ 220 (228)
+++|.++..+
T Consensus 345 L~~N~i~~~~ 354 (844)
T 3j0a_A 345 LQKNHIAIIQ 354 (844)
T ss_dssp CCSCCCCCCC
T ss_pred CCCCCCCccC
Confidence 6666665543
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=5.8e-23 Score=180.87 Aligned_cols=206 Identities=19% Similarity=0.163 Sum_probs=158.5
Q ss_pred CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
++++|.+..+.+..++.+++|++|++++|.+ |..++.+++|++|++++|.+.+..+..|..+++|++|+ +++|.
T Consensus 81 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~--Ls~N~ 158 (597)
T 3oja_B 81 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS--MSNNN 158 (597)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE--CCSSC
T ss_pred ECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE--eeCCc
Confidence 4567777777777788888888888887762 34567778888888888877765555667778888887 88887
Q ss_pred CCCCc--cccCCCCCcEEEeeCCcCCCCC---------------------------------------------------
Q 041723 78 ENFLP--SLGNLTKLNDLYLFGNDFSGKV--------------------------------------------------- 104 (228)
Q Consensus 78 ~~~~p--~~~~l~~L~~L~l~~n~l~~~~--------------------------------------------------- 104 (228)
+..++ .++.+++|++|++++|.+++..
T Consensus 159 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~ 238 (597)
T 3oja_B 159 LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK 238 (597)
T ss_dssp CCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEE
T ss_pred CCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEE
Confidence 74444 5777777777777777765321
Q ss_pred --------CChhhcccc-------ccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCC
Q 041723 105 --------PDSLGDLLQ-------LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTG 169 (228)
Q Consensus 105 --------p~~~~~l~~-------~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 169 (228)
+..++.++. .+.+.+..|..++.+++|+.|++++|.+.+ +|..+..+++|+.|++++|.++
T Consensus 239 L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~--- 314 (597)
T 3oja_B 239 LQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL--- 314 (597)
T ss_dssp CCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC---
T ss_pred CCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC---
Confidence 112233333 344567778899999999999999999984 6777788999999999999998
Q ss_pred CcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccc
Q 041723 170 DLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLA 217 (228)
Q Consensus 170 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~ 217 (228)
.+|..+..+++|++|++++|.+++.. +..+++|+.|++++|.+.
T Consensus 315 ~i~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 315 HVERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CCGGGHHHHTTCSEEECCSSCCCCCC----CCTTCCCSEEECCSSCEE
T ss_pred ccCcccccCCCCCEEECCCCCCCCcC----hhhcCCCCEEEeeCCCCC
Confidence 68888999999999999999998753 456889999998888865
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=3e-23 Score=182.58 Aligned_cols=201 Identities=18% Similarity=0.096 Sum_probs=169.6
Q ss_pred hhcccccccccccCCCCh------HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCC-CCc--ccc
Q 041723 15 AYGTASNAMKTLLQSPSL------ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKEN-FLP--SLG 85 (228)
Q Consensus 15 ~~~~l~~l~~l~l~~~~l------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~-~~p--~~~ 85 (228)
.++.+++|+++++++|.+ |..+..+++|++|++++|.+.+ .|..+..+++|++|+ +++|.+. ..| .+.
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~--l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLD--FQHSTLKRVTEFSAFL 421 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEE--CTTSEEESTTTTTTTT
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeE--CCCCccCCccChhhhh
Confidence 677889999999999973 6789999999999999998875 568889999999999 9999993 334 678
Q ss_pred CCCCCcEEEeeCCcCCCCCCChhhccccccc-------ccc-ccchhhhcCCCCCEEeccCCcccccCccccccCCCCCE
Q 041723 86 NLTKLNDLYLFGNDFSGKVPDSLGDLLQLNY-------LTG-EILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRA 157 (228)
Q Consensus 86 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~-------l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 157 (228)
.+++|++|++++|.+.+..|..++.++++.. +.+ ..|..++.+++|+.|++++|.+.+..|..+..+++|+.
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCE
Confidence 8999999999999998778888877777443 344 46778899999999999999999877888999999999
Q ss_pred EEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCC-CcccccccccccccCccccccCC
Q 041723 158 LDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLP-NFTIIGSVHETLASSHIFCTTKI 227 (228)
Q Consensus 158 L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~l~l~~n~~~~~~~~~~~~~ 227 (228)
|++++|.+++ ..|..+..+++|++|++++|+++. +|.. +..++ +|+++++ .++++.|+|++
T Consensus 502 L~Ls~N~l~~--~~~~~~~~l~~L~~L~l~~N~l~~-~p~~-~~~l~~~L~~l~l-----~~N~~~c~c~~ 563 (606)
T 3vq2_A 502 LNMSHNNLLF--LDSSHYNQLYSLSTLDCSFNRIET-SKGI-LQHFPKSLAFFNL-----TNNSVACICEH 563 (606)
T ss_dssp EECCSSCCSC--EEGGGTTTCTTCCEEECTTSCCCC-EESC-GGGSCTTCCEEEC-----CSCCCCCSSTT
T ss_pred EECCCCcCCC--cCHHHccCCCcCCEEECCCCcCcc-cCHh-HhhhcccCcEEEc-----cCCCcccCCcc
Confidence 9999999997 668889999999999999999985 4555 77776 5999994 45566677753
No 42
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=9.8e-24 Score=185.72 Aligned_cols=199 Identities=19% Similarity=0.173 Sum_probs=165.3
Q ss_pred ccccccccccCCCC--hHHHHhccCCCCeeecCCccCCCC--cchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcE
Q 041723 18 TASNAMKTLLQSPS--LANLAEKLANLKVLHLGQVNTAST--VPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLND 92 (228)
Q Consensus 18 ~l~~l~~l~l~~~~--l~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~ 92 (228)
.+++|+++++++|. .+..+..+++|++|++++|.+++. .+..+..+++|++|+ +++|.+..+| .+..+++|+.
T Consensus 326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~--L~~n~l~~~~~~~~~l~~L~~ 403 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD--LSFNGAIIMSANFMGLEELQH 403 (606)
T ss_dssp CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEE--CCSCSEEEECCCCTTCTTCCE
T ss_pred CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeE--CCCCccccchhhccCCCCCCe
Confidence 55666666666663 122455778888888888887765 378888999999999 9999997777 8889999999
Q ss_pred EEeeCCcCCCCCC-Chhhccccc-------cccccccchhhhcCCCCCEEeccCCccccc-CccccccCCCCCEEEccCC
Q 041723 93 LYLFGNDFSGKVP-DSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGS-VPSSIFELRNLRALDLSDN 163 (228)
Q Consensus 93 L~l~~n~l~~~~p-~~~~~l~~~-------~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n 163 (228)
|++++|.+.+..| ..+..++.+ +.+.+..|..++.+++|++|++++|.+.+. .|..+..+++|+.|++++|
T Consensus 404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC
Confidence 9999999986666 566666663 344566788899999999999999999863 6888999999999999999
Q ss_pred ccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCcc
Q 041723 164 NLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHI 221 (228)
Q Consensus 164 ~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 221 (228)
.+++ ..|..+.++++|++|++++|++++..|.. +.++++|++|++++|+++..|.
T Consensus 484 ~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~l~~N~l~~~p~ 538 (606)
T 3vq2_A 484 QLEQ--ISWGVFDTLHRLQLLNMSHNNLLFLDSSH-YNQLYSLSTLDCSFNRIETSKG 538 (606)
T ss_dssp CCCE--ECTTTTTTCTTCCEEECCSSCCSCEEGGG-TTTCTTCCEEECTTSCCCCEES
T ss_pred cCCc--cChhhhcccccCCEEECCCCcCCCcCHHH-ccCCCcCCEEECCCCcCcccCH
Confidence 9997 66788999999999999999999988888 9999999999999999986553
No 43
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=9.7e-23 Score=178.16 Aligned_cols=216 Identities=19% Similarity=0.132 Sum_probs=154.5
Q ss_pred CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
.+++|.+..+.+..++.+++|++|++++|.+ |+.+..+++|++||+++|.++. +|.. .+++|++|+ +++|.
T Consensus 58 ~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~--Ls~N~ 132 (562)
T 3a79_B 58 SLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHLD--LSFND 132 (562)
T ss_dssp ECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEEE--CCSSC
T ss_pred ECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccccCCEEE--CCCCC
Confidence 5678888888888889999999999998873 5678888888888888888874 5544 788888888 88888
Q ss_pred CCCC--c-cccCCCCCcEEEeeCCcCCC-------------------------CCCChhhccc-----------------
Q 041723 78 ENFL--P-SLGNLTKLNDLYLFGNDFSG-------------------------KVPDSLGDLL----------------- 112 (228)
Q Consensus 78 ~~~~--p-~~~~l~~L~~L~l~~n~l~~-------------------------~~p~~~~~l~----------------- 112 (228)
+..+ | .++++++|++|++++|.+++ ..|..+..+.
T Consensus 133 l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~ 212 (562)
T 3a79_B 133 FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ 212 (562)
T ss_dssp CSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCC
T ss_pred ccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhh
Confidence 8543 4 67778888888888877653 1222222211
Q ss_pred ----------------------------------------------------------------c-------cccccccc
Q 041723 113 ----------------------------------------------------------------Q-------LNYLTGEI 121 (228)
Q Consensus 113 ----------------------------------------------------------------~-------~~~l~~~~ 121 (228)
. .+.+.+.+
T Consensus 213 ~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i 292 (562)
T 3a79_B 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI 292 (562)
T ss_dssp CEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCC
T ss_pred hhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccc
Confidence 0 01112333
Q ss_pred chhh-----------------------------------------------------hcCCCCCEEeccCCcccccCccc
Q 041723 122 LVEI-----------------------------------------------------RKLTQLHILRLAENQLEGSVPSS 148 (228)
Q Consensus 122 ~~~~-----------------------------------------------------~~l~~L~~L~ls~n~l~~~~~~~ 148 (228)
|..+ +.+++|++|++++|.+.+..|..
T Consensus 293 p~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 372 (562)
T 3a79_B 293 DREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQG 372 (562)
T ss_dssp CCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred cchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhh
Confidence 4332 55678888888888888777888
Q ss_pred cccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723 149 IFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF 222 (228)
Q Consensus 149 ~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 222 (228)
++.+++|+.|++++|.+++...+|..+.++++|++|++++|.+++.+|...+..+++|++|++++|++++..+.
T Consensus 373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 446 (562)
T 3a79_B 373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR 446 (562)
T ss_dssp CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS
T ss_pred hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh
Confidence 88888999999999888853334566788888999999999888733432267777778888777777654433
No 44
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=3.7e-22 Score=159.35 Aligned_cols=178 Identities=25% Similarity=0.260 Sum_probs=128.3
Q ss_pred hhcccccccccccCCCChH--HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCC
Q 041723 15 AYGTASNAMKTLLQSPSLA--NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKL 90 (228)
Q Consensus 15 ~~~~l~~l~~l~l~~~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L 90 (228)
....+.+++.+++.++.+. +.+..+++|++|++++|.+.+. ..+..+++|++|+ +++|.+..++ .+..+++|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~--L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI--LTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE--CTTSCCCCCCTTTTTTCTTC
T ss_pred ccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE--CCCCccCccChhHhcCCcCC
Confidence 3456667888888887642 3577788888888888887763 4677888888888 8888886665 46778888
Q ss_pred cEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCC
Q 041723 91 NDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGD 170 (228)
Q Consensus 91 ~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 170 (228)
++|++++|.+++..+. .++.+++|++|++++|.+++..+..+..+++|+.|++++|.+++ .
T Consensus 112 ~~L~L~~n~l~~~~~~-----------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~ 172 (272)
T 3rfs_A 112 KELVLVENQLQSLPDG-----------------VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS--L 172 (272)
T ss_dssp CEEECTTSCCCCCCTT-----------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--C
T ss_pred CEEECCCCcCCccCHH-----------------HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc--c
Confidence 8888888888733332 24566778888888887775545556777888888888887775 4
Q ss_pred cchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccc
Q 041723 171 LNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETL 216 (228)
Q Consensus 171 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~ 216 (228)
.+..+..+++|++|++++|.+++..+.. +..+++|+++++++|.+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGV-FDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCSSCB
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHH-HhCCcCCCEEEccCCCc
Confidence 4455677778888888888887776666 77778888888666644
No 45
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=2.7e-22 Score=158.32 Aligned_cols=173 Identities=24% Similarity=0.233 Sum_probs=135.7
Q ss_pred cccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEe
Q 041723 21 NAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYL 95 (228)
Q Consensus 21 ~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l 95 (228)
+.+.+++.++. +|..+. +.++.|++++|.+.+..+..+..+++|++|+ +++|.+..++ .+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~--L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLN--LDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEE--CTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEE--CCCCcCCccCHhHhccCCcCCEEEC
Confidence 45667777775 455444 5889999999998888888888899999999 9999996665 5788899999999
Q ss_pred eCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhh
Q 041723 96 FGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVL 175 (228)
Q Consensus 96 ~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~ 175 (228)
++|.++ .++.. .+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++ ..+..+
T Consensus 91 ~~n~l~-~~~~~----------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~ 151 (251)
T 3m19_A 91 ANNQLA-SLPLG----------------VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS--IPAGAF 151 (251)
T ss_dssp TTSCCC-CCCTT----------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTT
T ss_pred CCCccc-ccChh----------------HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc--cCHHHc
Confidence 999887 33322 24567888999999998885545557888899999999998885 344468
Q ss_pred hcCCCCCEEEccCCccccccCccccCCCCCcccccccccccc
Q 041723 176 LNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLA 217 (228)
Q Consensus 176 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~ 217 (228)
..+++|++|++++|++++.++.. +..+++|+++++++|+++
T Consensus 152 ~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 152 DKLTNLQTLSLSTNQLQSVPHGA-FDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCSCCBC
T ss_pred CcCcCCCEEECCCCcCCccCHHH-HhCCCCCCEEEeeCCcee
Confidence 88889999999999998877767 888888999997776654
No 46
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=9e-23 Score=175.61 Aligned_cols=201 Identities=19% Similarity=0.113 Sum_probs=155.5
Q ss_pred CCcCCcccccchhhhcccccccccccCCCChH--HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSLA--NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKEN 79 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~ 79 (228)
++++|.+..+.+..++.+++|++|++++|.+. ..+..+++|++|++++|.+++.. ..++|++|+ +++|.+.
T Consensus 40 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~--L~~N~l~ 112 (487)
T 3oja_A 40 DLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL-----VGPSIETLH--AANNNIS 112 (487)
T ss_dssp ECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE--CCSSCCC
T ss_pred EeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCC-----CCCCcCEEE--CcCCcCC
Confidence 46677777777778888888888888888732 12777788888888888776532 226777777 8888886
Q ss_pred CCccccCCCCCcEEEeeCCcCCCCCCChhhcccc-------ccccccccchhhh-cCCCCCEEeccCCcccccCcccccc
Q 041723 80 FLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ-------LNYLTGEILVEIR-KLTQLHILRLAENQLEGSVPSSIFE 151 (228)
Q Consensus 80 ~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~-------~~~l~~~~~~~~~-~l~~L~~L~ls~n~l~~~~~~~~~~ 151 (228)
.++. ..+++|+.|++++|.+++..|..++.++. .|.+.+..|..+. .+++|+.|++++|.+++. |. ...
T Consensus 113 ~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~ 189 (487)
T 3oja_A 113 RVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVV 189 (487)
T ss_dssp CEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCC
T ss_pred CCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-ccc
Confidence 6652 24678999999999998766777777666 3455666777775 789999999999999854 43 446
Q ss_pred CCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccc
Q 041723 152 LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLA 217 (228)
Q Consensus 152 l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~ 217 (228)
+++|+.|++++|.+++ +|+.+..+++|+.|++++|.+++ +|.. +..+++|+.+++++|.+.
T Consensus 190 l~~L~~L~Ls~N~l~~---~~~~~~~l~~L~~L~Ls~N~l~~-lp~~-l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAF---MGPEFQSAAGVTWISLRNNKLVL-IEKA-LRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTCCEEECCSSCCCE---ECGGGGGGTTCSEEECTTSCCCE-ECTT-CCCCTTCCEEECTTCCBC
T ss_pred CCCCCEEECCCCCCCC---CCHhHcCCCCccEEEecCCcCcc-cchh-hccCCCCCEEEcCCCCCc
Confidence 8999999999999984 66668899999999999999997 4656 788999999999988887
No 47
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=9.6e-23 Score=176.41 Aligned_cols=107 Identities=13% Similarity=0.024 Sum_probs=92.7
Q ss_pred CCcCCcccccchhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
++++++++.++.. +. ++++++++++|. .|+.+..+++|++|++++|.+++..|.++..+++|++|+ +++|.
T Consensus 6 ~ls~n~l~~ip~~-~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~--Ls~N~ 80 (520)
T 2z7x_B 6 DRSKNGLIHVPKD-LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD--LSHNK 80 (520)
T ss_dssp ECTTSCCSSCCCS-CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEE--CCSSC
T ss_pred ecCCCCccccccc-cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEe--cCCCc
Confidence 5678888877643 33 799999999997 357899999999999999999988899999999999999 99999
Q ss_pred CCCCccccCCCCCcEEEeeCCcCCC-CCCChhhccccc
Q 041723 78 ENFLPSLGNLTKLNDLYLFGNDFSG-KVPDSLGDLLQL 114 (228)
Q Consensus 78 ~~~~p~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~~ 114 (228)
+..+|.. .+++|++|++++|.+++ .+|..++.++++
T Consensus 81 l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L 117 (520)
T 2z7x_B 81 LVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQL 117 (520)
T ss_dssp CCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTC
T ss_pred eeecCcc-ccCCccEEeccCCccccccchhhhccCCcc
Confidence 9989844 89999999999999986 477888877763
No 48
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=7.6e-22 Score=160.34 Aligned_cols=191 Identities=21% Similarity=0.275 Sum_probs=137.8
Q ss_pred hcccccccccccCCCChH--HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEE
Q 041723 16 YGTASNAMKTLLQSPSLA--NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDL 93 (228)
Q Consensus 16 ~~~l~~l~~l~l~~~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L 93 (228)
.+.+++++++++.++.+. +.+..+++|++|++++|.+.+..+ +..+++|++|+ +++|.+..++.+..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~--L~~n~l~~~~~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELE--LSGNPLKNVSAIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEE--CCSCCCSCCGGGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEE--ccCCcCCCchhhcCCCCCCEE
Confidence 345566777777776531 246667777777777777765433 67777777777 777777666666677777777
Q ss_pred EeeCCcCCCCCCChhhccccccccc------cccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCcccc
Q 041723 94 YLFGNDFSGKVPDSLGDLLQLNYLT------GEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSG 167 (228)
Q Consensus 94 ~l~~n~l~~~~p~~~~~l~~~~~l~------~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 167 (228)
++++|.+++ ++. +..++++..+. ..++. ++.+++|+.|++++|.+.+ ++. +..+++|+.|++++|.+++
T Consensus 113 ~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 113 DLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp ECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC
T ss_pred ECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc
Confidence 777777763 332 44444433221 11222 6788999999999999984 444 8899999999999999984
Q ss_pred CCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723 168 TGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF 222 (228)
Q Consensus 168 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 222 (228)
++. +..+++|++|++++|++++..+ +..+++|+.|++++|+++..+..
T Consensus 188 ---~~~-l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 188 ---ISP-LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp ---CGG-GGGCTTCCEEECTTSCCCBCGG---GTTCTTCCEEEEEEEEEECCCEE
T ss_pred ---Chh-hcCCCCCCEEEccCCccCcccc---ccCCCCCCEEEccCCeeecCCee
Confidence 444 7889999999999999987653 67899999999999999876543
No 49
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=6.6e-22 Score=157.89 Aligned_cols=186 Identities=24% Similarity=0.223 Sum_probs=155.7
Q ss_pred CCcCCcccccchhhhcccccccccccCCCChH--HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSLA--NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKEN 79 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~ 79 (228)
++.++.++.+. .++.+++|+++++++|.+. +.+..+++|++|++++|.+++..+..+..+++|++|+ +++|.+.
T Consensus 47 ~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--L~~n~l~ 122 (272)
T 3rfs_A 47 IANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV--LVENQLQ 122 (272)
T ss_dssp ECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE--CTTSCCC
T ss_pred eeCCCCccccc--ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE--CCCCcCC
Confidence 35566666654 5788999999999999843 4788999999999999999988888899999999999 9999997
Q ss_pred CCc--cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCE
Q 041723 80 FLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRA 157 (228)
Q Consensus 80 ~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 157 (228)
.++ .+..+++|++|++++|.++ .++.. .++.+++|+.|++++|.+++..+..++.+++|+.
T Consensus 123 ~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~----------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 123 SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKG----------------VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTT----------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCHHHhccCCCCCEEECCCCccC-ccCHH----------------HhccCccCCEEECCCCCcCccCHHHhcCCccCCE
Confidence 776 5889999999999999998 34422 2467889999999999999666666789999999
Q ss_pred EEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccccc
Q 041723 158 LDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLAS 218 (228)
Q Consensus 158 L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~ 218 (228)
|++++|.+++ ..+..+..+++|+++++++|++.+ .++.++.++++.|.+++
T Consensus 186 L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 186 LRLYQNQLKS--VPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSG 236 (272)
T ss_dssp EECCSSCCSC--CCTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGG
T ss_pred EECCCCcCCc--cCHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCC
Confidence 9999999996 556668899999999999998753 35667888888887765
No 50
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=2.6e-22 Score=183.11 Aligned_cols=213 Identities=20% Similarity=0.186 Sum_probs=160.8
Q ss_pred CcCC-cccccchhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchh--ccCCcchHHHHHhhhh
Q 041723 3 HHGT-RKKKIATAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYA--SANLSSLFSLLSLIAY 75 (228)
Q Consensus 3 ~~~~-~~~~~~~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~~~l~~ 75 (228)
+++| .+..+.+.+++.+++|++|++++|. .|+.+..+++|++|++++|.+.+..+.. +..+++|++|+ +++
T Consensus 55 Ls~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~--Ls~ 132 (844)
T 3j0a_A 55 LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD--LSK 132 (844)
T ss_dssp ECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE--EES
T ss_pred CCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE--CCC
Confidence 3444 4455667777888888888888776 3667777888888888888777655544 77777888877 888
Q ss_pred cCCCCC--c-cccCCCCCcEEEeeCCcCCCCCCChhhcc--cc-------------------------------------
Q 041723 76 CKENFL--P-SLGNLTKLNDLYLFGNDFSGKVPDSLGDL--LQ------------------------------------- 113 (228)
Q Consensus 76 ~~~~~~--p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l--~~------------------------------------- 113 (228)
|.+..+ + .++++++|++|++++|.+++..+..++.+ +.
T Consensus 133 N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls 212 (844)
T 3j0a_A 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212 (844)
T ss_dssp CCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCS
T ss_pred CcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecC
Confidence 877433 2 56777777777777777765444444332 00
Q ss_pred --------------------------------------------------------------ccccccccchhhhcCCCC
Q 041723 114 --------------------------------------------------------------LNYLTGEILVEIRKLTQL 131 (228)
Q Consensus 114 --------------------------------------------------------------~~~l~~~~~~~~~~l~~L 131 (228)
.+.+.+..+..+..+++|
T Consensus 213 ~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 292 (844)
T 3j0a_A 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL 292 (844)
T ss_dssp SCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCC
T ss_pred CCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCC
Confidence 011112234557788999
Q ss_pred CEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccc
Q 041723 132 HILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGS 211 (228)
Q Consensus 132 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l 211 (228)
+.|++++|.+.+..|..+..+++|+.|++++|.+++ ..|..+..+++|+.|++++|.+.+..+.. +.++++|++|++
T Consensus 293 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~L 369 (844)
T 3j0a_A 293 KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE--LYSSNFYGLPKVAYIDLQKNHIAIIQDQT-FKFLEKLQTLDL 369 (844)
T ss_dssp CEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSC--CCSCSCSSCTTCCEEECCSCCCCCCCSSC-SCSCCCCCEEEE
T ss_pred CEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCc--cCHHHhcCCCCCCEEECCCCCCCccChhh-hcCCCCCCEEEC
Confidence 999999999997778889999999999999999986 66788999999999999999999888777 899999999999
Q ss_pred cccccccCc
Q 041723 212 VHETLASSH 220 (228)
Q Consensus 212 ~~n~~~~~~ 220 (228)
++|.++..+
T Consensus 370 s~N~l~~i~ 378 (844)
T 3j0a_A 370 RDNALTTIH 378 (844)
T ss_dssp ETCCSCCCS
T ss_pred CCCCCCccc
Confidence 999987643
No 51
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=2.2e-23 Score=169.65 Aligned_cols=191 Identities=22% Similarity=0.149 Sum_probs=136.8
Q ss_pred ccccccccccCCCC----hHHHH--hccCCCCeeecCCccCCCCcchhccCC-----cchHHHHHhhhhcCCCCCc--cc
Q 041723 18 TASNAMKTLLQSPS----LANLA--EKLANLKVLHLGQVNTASTVPYASANL-----SSLFSLLSLIAYCKENFLP--SL 84 (228)
Q Consensus 18 ~l~~l~~l~l~~~~----l~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~~~l~~~~~~~~p--~~ 84 (228)
.+++|++|++++|. +|..+ ..+++|++|++++|.+++. |..+..+ ++|++|+ +++|.+..++ .+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~--L~~N~l~~~~~~~~ 169 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLS--IAQAHSLNFSCEQV 169 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEE--EESCSCCCCCTTTC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEE--eeCCCCccchHHHh
Confidence 57788888888886 34444 6788888888888888776 6667666 7888888 8888885554 77
Q ss_pred cCCCCCcEEEeeCCcCCCC--CCChh--hccccc-------ccccc--ccc-hhhhcCCCCCEEeccCCcccccCc-ccc
Q 041723 85 GNLTKLNDLYLFGNDFSGK--VPDSL--GDLLQL-------NYLTG--EIL-VEIRKLTQLHILRLAENQLEGSVP-SSI 149 (228)
Q Consensus 85 ~~l~~L~~L~l~~n~l~~~--~p~~~--~~l~~~-------~~l~~--~~~-~~~~~l~~L~~L~ls~n~l~~~~~-~~~ 149 (228)
+.+++|++|++++|.+.+. ++..+ +.++.+ +.+.+ .++ ..+..+++|+.|++++|.+.+..| ..+
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 249 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence 7888888888888876543 12222 333332 22221 222 223567889999999999886554 445
Q ss_pred ccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccC
Q 041723 150 FELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASS 219 (228)
Q Consensus 150 ~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 219 (228)
..+++|+.|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|+++++++|++++.
T Consensus 250 ~~l~~L~~L~Ls~N~l~---~ip~~~~--~~L~~L~Ls~N~l~~~-p~--~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLK---QVPKGLP--AKLSVLDLSYNRLDRN-PS--PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCCTTCCEEECTTSCCS---SCCSSCC--SEEEEEECCSSCCCSC-CC--TTTSCEEEEEECTTCTTTCC
T ss_pred hhcCCCCEEECCCCccC---hhhhhcc--CCceEEECCCCCCCCC-hh--HhhCCCCCEEeccCCCCCCC
Confidence 67888999999999888 5676655 7889999999999876 33 67888999999988888764
No 52
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=3.7e-22 Score=174.50 Aligned_cols=107 Identities=19% Similarity=0.087 Sum_probs=90.8
Q ss_pred CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
.+++++++.++... . +++++|++++|.+ |+.+..+++|++|++++|.+++..|.+|..+++|++|+ +++|.
T Consensus 37 ~ls~~~L~~ip~~~-~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~--Ls~N~ 111 (562)
T 3a79_B 37 DYSNRNLTHVPKDL-P--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD--VSHNR 111 (562)
T ss_dssp ECTTSCCCSCCTTS-C--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE--CTTSC
T ss_pred EcCCCCCccCCCCC-C--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE--CCCCc
Confidence 45677888766533 2 6999999999983 46899999999999999999988899999999999999 99999
Q ss_pred CCCCccccCCCCCcEEEeeCCcCCC-CCCChhhccccc
Q 041723 78 ENFLPSLGNLTKLNDLYLFGNDFSG-KVPDSLGDLLQL 114 (228)
Q Consensus 78 ~~~~p~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~~ 114 (228)
+..+|.. .+++|++|++++|.+++ .+|..++.++++
T Consensus 112 l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L 148 (562)
T 3a79_B 112 LQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKL 148 (562)
T ss_dssp CCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTC
T ss_pred CCccCcc-ccccCCEEECCCCCccccCchHhhcccCcc
Confidence 9989944 89999999999999985 345788877763
No 53
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.5e-21 Score=155.63 Aligned_cols=178 Identities=25% Similarity=0.217 Sum_probs=151.4
Q ss_pred cccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEe
Q 041723 21 NAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYL 95 (228)
Q Consensus 21 ~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l 95 (228)
+.+.++++++. +|..+. .++++|++++|.+.+..+..+..+++|++|+ +++|.+..+| .+..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~--l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLY--LNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEE--CCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEE--CCCCccCeeChhhhcCCCCCCEEEC
Confidence 45678888776 454443 5899999999999987778999999999999 9999998887 5688999999999
Q ss_pred eCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhh
Q 041723 96 FGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVL 175 (228)
Q Consensus 96 ~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~ 175 (228)
++|.++ .+|.. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++ ..+..+
T Consensus 93 ~~n~l~-~~~~~----------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~ 153 (270)
T 2o6q_A 93 TDNKLQ-ALPIG----------------VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS--LPKGVF 153 (270)
T ss_dssp CSSCCC-CCCTT----------------TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTT
T ss_pred CCCcCC-cCCHh----------------HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc--cCHhHc
Confidence 999998 44432 25678899999999999997666778999999999999999985 444558
Q ss_pred hcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723 176 LNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF 222 (228)
Q Consensus 176 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 222 (228)
..+++|++|++++|.+++..+.. +..+++|++|++++|+++..+..
T Consensus 154 ~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQLKRVPEGA-FDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCcccceeEecCCcCcEeChhH-hccCCCcCEEECCCCcCCcCCHH
Confidence 89999999999999999888777 88999999999999999876643
No 54
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=1e-22 Score=177.72 Aligned_cols=199 Identities=20% Similarity=0.182 Sum_probs=148.8
Q ss_pred ccccccccccCCCChHHH--HhccCCCCeeecCCccCCCCc--chhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcE
Q 041723 18 TASNAMKTLLQSPSLANL--AEKLANLKVLHLGQVNTASTV--PYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLND 92 (228)
Q Consensus 18 ~l~~l~~l~l~~~~l~~~--~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~ 92 (228)
.+++|+++++.+|.+... ...+++|++|++++|.+.+.. +..+..+++|++|+ +++|.+..++ .+..+++|+.
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~--l~~n~l~~~~~~~~~l~~L~~ 400 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD--LSFNGVITMSSNFLGLEQLEH 400 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEE--CCSCSEEEEEEEEETCTTCCE
T ss_pred cccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEE--CCCCccccccccccccCCCCE
Confidence 445555555555542211 145677777777777776543 56677777788877 8888776666 6777788888
Q ss_pred EEeeCCcCCCCCC-Chhhccccc-------cccccccchhhhcCCCCCEEeccCCccc-ccCccccccCCCCCEEEccCC
Q 041723 93 LYLFGNDFSGKVP-DSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLE-GSVPSSIFELRNLRALDLSDN 163 (228)
Q Consensus 93 L~l~~n~l~~~~p-~~~~~l~~~-------~~l~~~~~~~~~~l~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n 163 (228)
|++++|.+.+..+ ..+..++.+ +.+.+..|..+..+++|+.|++++|.+. +.+|..+..+++|+.|++++|
T Consensus 401 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp EECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence 8888877765444 345555543 3334556677888999999999999997 467888999999999999999
Q ss_pred ccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccC
Q 041723 164 NLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTK 226 (228)
Q Consensus 164 ~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~ 226 (228)
.+++ ..|..+..+++|++|++++|.+++.++.. +.++++|+++++++|. +.|.|+
T Consensus 481 ~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~N~-----~~~~~~ 535 (570)
T 2z63_A 481 QLEQ--LSPTAFNSLSSLQVLNMASNQLKSVPDGI-FDRLTSLQKIWLHTNP-----WDCSCP 535 (570)
T ss_dssp CCCE--ECTTTTTTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCSSC-----BCCCTT
T ss_pred cccc--CChhhhhcccCCCEEeCCCCcCCCCCHHH-hhcccCCcEEEecCCc-----ccCCCc
Confidence 9996 66888999999999999999999988877 8999999999966665 455554
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=9.2e-23 Score=168.55 Aligned_cols=208 Identities=18% Similarity=0.156 Sum_probs=170.4
Q ss_pred cCCcccccchhhhcccccccccccCCCCh---H-HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCC
Q 041723 4 HGTRKKKIATAAYGTASNAMKTLLQSPSL---A-NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKEN 79 (228)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~l~~l~l~~~~l---~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~ 79 (228)
++++++.++.. +. +++++|++++|.+ + +.+..+++|++|++++|.+++..+.++..+++|++|+ +++|.+.
T Consensus 39 ~~~~l~~iP~~-~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--Ls~n~l~ 113 (353)
T 2z80_A 39 SSGSLNSIPSG-LT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD--LSYNYLS 113 (353)
T ss_dssp CSTTCSSCCTT-CC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE--CCSSCCS
T ss_pred CCCCccccccc-cc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE--CCCCcCC
Confidence 45566666542 33 4899999999983 4 3789999999999999999987888999999999999 9999998
Q ss_pred CCc--cccCCCCCcEEEeeCCcCCCCCCC--hhhccccccc--------cccccchhhhcCCCCCEEeccCCcccccCcc
Q 041723 80 FLP--SLGNLTKLNDLYLFGNDFSGKVPD--SLGDLLQLNY--------LTGEILVEIRKLTQLHILRLAENQLEGSVPS 147 (228)
Q Consensus 80 ~~p--~~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~~~~--------l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 147 (228)
.+| .++.+++|++|++++|.++ .+|. .+..++.+.. +.+..+..++.+++|++|++++|.+.+..|.
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred cCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 888 4899999999999999998 5665 5666666333 3444566788999999999999999977788
Q ss_pred ccccCCCCCEEEccCCccccCCCcchh-hhcCCCCCEEEccCCccccccCc-----------------------------
Q 041723 148 SIFELRNLRALDLSDNNLSGTGDLNMV-LLNLESLTALVLSSNKLSLLAGT----------------------------- 197 (228)
Q Consensus 148 ~~~~l~~L~~L~l~~n~~~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~~~----------------------------- 197 (228)
.+..+++|++|++++|.++ .+|.. +..+++|++|++++|.+++..+.
T Consensus 193 ~l~~l~~L~~L~l~~n~l~---~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHI---LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp TTTTCSEEEEEEEECSCST---THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred HHhccccCCeecCCCCccc---cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 9999999999999999987 55554 45689999999999999875332
Q ss_pred --cccCCCCCcccccccccccccCcc
Q 041723 198 --TVNTNLPNFTIIGSVHETLASSHI 221 (228)
Q Consensus 198 --~~~~~l~~L~~l~l~~n~~~~~~~ 221 (228)
. +.++++|++|++++|+++..+.
T Consensus 270 ~~~-l~~l~~L~~L~Ls~N~l~~i~~ 294 (353)
T 2z80_A 270 MKL-LNQISGLLELEFSRNQLKSVPD 294 (353)
T ss_dssp HHH-HHTCTTCCEEECCSSCCCCCCT
T ss_pred HHH-HhcccCCCEEECCCCCCCccCH
Confidence 3 4578899999999999986554
No 56
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=8.9e-23 Score=165.86 Aligned_cols=190 Identities=21% Similarity=0.150 Sum_probs=119.4
Q ss_pred ccccccccCCCCh----HHHH--hccCCCCeeecCCccCCCCcc----hhccCCcchHHHHHhhhhcCCCCCc--cccCC
Q 041723 20 SNAMKTLLQSPSL----ANLA--EKLANLKVLHLGQVNTASTVP----YASANLSSLFSLLSLIAYCKENFLP--SLGNL 87 (228)
Q Consensus 20 ~~l~~l~l~~~~l----~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l 87 (228)
++++++++++|.+ |..+ ..+++|++|++++|.+.+..+ ..+..+++|++|+ +++|.+..++ .++.+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~--Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLS--IAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEE--EECCSSCCCCTTSCCCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEE--eeCCCcchhhHHHhccC
Confidence 3466666666542 3333 555666666666666554322 2334455666666 6666663333 55556
Q ss_pred CCCcEEEeeCCcCCCC--C--CChhhcccccc-------ccc--cccch-hhhcCCCCCEEeccCCcccccCccccccC-
Q 041723 88 TKLNDLYLFGNDFSGK--V--PDSLGDLLQLN-------YLT--GEILV-EIRKLTQLHILRLAENQLEGSVPSSIFEL- 152 (228)
Q Consensus 88 ~~L~~L~l~~n~l~~~--~--p~~~~~l~~~~-------~l~--~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~l- 152 (228)
++|++|++++|.+.+. + +..++.++++. .+. ...+. .++.+++|++|++++|.+.+..|..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 6666666666654321 1 11112222221 111 01111 24678899999999999987667767666
Q ss_pred --CCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccC
Q 041723 153 --RNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASS 219 (228)
Q Consensus 153 --~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 219 (228)
++|+.|++++|.++ .+|..+. ++|++|++++|++++.+ . +..+++|++|++++|++++.
T Consensus 249 ~~~~L~~L~Ls~N~l~---~lp~~~~--~~L~~L~Ls~N~l~~~~--~-~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE---QVPKGLP--AKLRVLDLSSNRLNRAP--Q-PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp CCTTCCCEECCSSCCC---SCCSCCC--SCCSCEECCSCCCCSCC--C-TTSCCCCSCEECSSTTTSCC
T ss_pred CcCcCCEEECCCCCCC---chhhhhc--CCCCEEECCCCcCCCCc--h-hhhCCCccEEECcCCCCCCC
Confidence 69999999999998 5676553 78999999999998752 2 56789999999999998764
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=3.2e-22 Score=163.11 Aligned_cols=200 Identities=20% Similarity=0.125 Sum_probs=133.9
Q ss_pred CcCCcccccchhhhcccccccccccCCCChH--HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCC
Q 041723 3 HHGTRKKKIATAAYGTASNAMKTLLQSPSLA--NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENF 80 (228)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~ 80 (228)
+++|.+..+.+..++.+++|++|++++|.+. ..+..+++|++|++++|.+++.. ..++|++|+ +++|.+..
T Consensus 41 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~--l~~n~l~~ 113 (317)
T 3o53_A 41 LSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL-----VGPSIETLH--AANNNISR 113 (317)
T ss_dssp CTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE-----ECTTCCEEE--CCSSCCSE
T ss_pred CcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc-----CCCCcCEEE--CCCCccCC
Confidence 4455555555555555555555555555521 11555555555555555554321 224555555 55555544
Q ss_pred CccccCCCCCcEEEeeCCcCCCCCCChhhccccc-------cccccccchhh-hcCCCCCEEeccCCcccccCccccccC
Q 041723 81 LPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEI-RKLTQLHILRLAENQLEGSVPSSIFEL 152 (228)
Q Consensus 81 ~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~-------~~l~~~~~~~~-~~l~~L~~L~ls~n~l~~~~~~~~~~l 152 (228)
++ ...+++|++|++++|.+++..+..++.++.+ +.+.+..+..+ ..+++|++|++++|.+++ ++. ...+
T Consensus 114 ~~-~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l 190 (317)
T 3o53_A 114 VS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QVVF 190 (317)
T ss_dssp EE-ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC-CCCC
T ss_pred cC-ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccc-cccc
Confidence 44 1235678888888888885555566666553 34445555555 467899999999999884 343 3458
Q ss_pred CCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccc
Q 041723 153 RNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLA 217 (228)
Q Consensus 153 ~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~ 217 (228)
++|+.|++++|.++ .+|+.+..+++|++|++++|++++ +|.. +..+++|+.+++++|.+.
T Consensus 191 ~~L~~L~Ls~N~l~---~l~~~~~~l~~L~~L~L~~N~l~~-l~~~-~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 191 AKLKTLDLSSNKLA---FMGPEFQSAAGVTWISLRNNKLVL-IEKA-LRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp TTCCEEECCSSCCC---EECGGGGGGTTCSEEECTTSCCCE-ECTT-CCCCTTCCEEECTTCCCB
T ss_pred ccCCEEECCCCcCC---cchhhhcccCcccEEECcCCcccc-hhhH-hhcCCCCCEEEccCCCcc
Confidence 89999999999998 466668889999999999999985 4666 788999999998888876
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=8.5e-23 Score=166.16 Aligned_cols=192 Identities=19% Similarity=0.136 Sum_probs=143.7
Q ss_pred ccccccCCCC-----hHHHHh-------ccCCCCeeecCCccCCCCcchhc--cCCcchHHHHHhhhhcCCCCCc-cccC
Q 041723 22 AMKTLLQSPS-----LANLAE-------KLANLKVLHLGQVNTASTVPYAS--ANLSSLFSLLSLIAYCKENFLP-SLGN 86 (228)
Q Consensus 22 l~~l~l~~~~-----l~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~~~l~~~~~~~~p-~~~~ 86 (228)
++.+++++|. +|+.+. ++++|++|++++|.+++..|..+ ..+++|++|+ +++|.+..+| .+..
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~--Ls~N~l~~~~~~~~~ 142 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILN--LRNVSWATRDAWLAE 142 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEE--EESCBCSSSSSHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEE--ccCCCCcchhHHHHH
Confidence 6777777775 344444 68899999999999988888776 8899999999 9999996667 6666
Q ss_pred C-----CCCcEEEeeCCcCCCCCCChhhcccccccc-------ccc--cchhh--hcCCCCCEEeccCCccccc--Cc-c
Q 041723 87 L-----TKLNDLYLFGNDFSGKVPDSLGDLLQLNYL-------TGE--ILVEI--RKLTQLHILRLAENQLEGS--VP-S 147 (228)
Q Consensus 87 l-----~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l-------~~~--~~~~~--~~l~~L~~L~ls~n~l~~~--~~-~ 147 (228)
+ ++|++|++++|.+++..|..++.++++..+ .+. .|..+ +.+++|++|++++|.+++. ++ .
T Consensus 143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence 6 889999999999986666777777774433 232 23344 7788899999999988721 12 2
Q ss_pred ccccCCCCCEEEccCCccccCCCcc-hhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCcc
Q 041723 148 SIFELRNLRALDLSDNNLSGTGDLN-MVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHI 221 (228)
Q Consensus 148 ~~~~l~~L~~L~l~~n~~~~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 221 (228)
.+..+++|+.|++++|.+++ ..| ..+..+++|++|++++|.++. +|.. +. ++|++|++++|++++.+.
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~~-~~--~~L~~L~Ls~N~l~~~p~ 291 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRD--AAGAPSCDWPSQLNSLNLSFTGLKQ-VPKG-LP--AKLSVLDLSYNRLDRNPS 291 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCS--SCCCSCCCCCTTCCEEECTTSCCSS-CCSS-CC--SEEEEEECCSSCCCSCCC
T ss_pred HHhcCCCCCEEECCCCcCCc--ccchhhhhhcCCCCEEECCCCccCh-hhhh-cc--CCceEEECCCCCCCCChh
Confidence 34577889999999999886 443 345667889999999999984 4554 43 789999999999987654
No 59
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=2.5e-22 Score=182.72 Aligned_cols=156 Identities=24% Similarity=0.313 Sum_probs=137.0
Q ss_pred cchhccCCcchHHHHHhhhhcCCCC------------------Cc-ccc--CCCCCcEEEeeCCcCCCCCCChhhccccc
Q 041723 56 VPYASANLSSLFSLLSLIAYCKENF------------------LP-SLG--NLTKLNDLYLFGNDFSGKVPDSLGDLLQL 114 (228)
Q Consensus 56 ~~~~~~~l~~L~~L~~~l~~~~~~~------------------~p-~~~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~~ 114 (228)
+|..+..+++|++|+ +++|.+.. +| .++ ++++|+.|++++|.+.+.+|..++.++.+
T Consensus 440 IP~~l~~L~~L~~L~--Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L 517 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIY--FANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517 (876)
T ss_dssp ECGGGGGCTTCCEEE--EESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSC
T ss_pred hhHHHhcCCCCCEEE--CcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCC
Confidence 788899999999999 99999965 88 776 99999999999999999999999888773
Q ss_pred -------cc-ccc-ccchhhhcCC-------CCCEEeccCCcccccCcc--ccccCCCCCEEEccCCccccCCCcchhhh
Q 041723 115 -------NY-LTG-EILVEIRKLT-------QLHILRLAENQLEGSVPS--SIFELRNLRALDLSDNNLSGTGDLNMVLL 176 (228)
Q Consensus 115 -------~~-l~~-~~~~~~~~l~-------~L~~L~ls~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~p~~~~ 176 (228)
+. +.+ .+|..++.++ +|+.|++++|.+. .+|. .++.+++|+.|++++|.++ .+| .+.
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~---~lp-~~~ 592 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR---HLE-AFG 592 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC---BCC-CCC
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc---cch-hhc
Confidence 33 556 7888777665 9999999999999 7888 8999999999999999998 677 789
Q ss_pred cCCCCCEEEccCCccccccCccccCCCCC-cccccccccccccCc
Q 041723 177 NLESLTALVLSSNKLSLLAGTTVNTNLPN-FTIIGSVHETLASSH 220 (228)
Q Consensus 177 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~l~l~~n~~~~~~ 220 (228)
.+++|+.|++++|.++ .+|.. +.++++ |++|++++|+++..|
T Consensus 593 ~L~~L~~L~Ls~N~l~-~lp~~-l~~l~~~L~~L~Ls~N~L~~lp 635 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIE-EIPED-FCAFTDQVEGLGFSHNKLKYIP 635 (876)
T ss_dssp TTSEESEEECCSSCCS-CCCTT-SCEECTTCCEEECCSSCCCSCC
T ss_pred CCCcceEEECcCCccc-cchHH-HhhccccCCEEECcCCCCCcCc
Confidence 9999999999999999 66777 888998 999999999998644
No 60
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=3.8e-22 Score=173.58 Aligned_cols=140 Identities=19% Similarity=0.116 Sum_probs=100.1
Q ss_pred CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
++++|++..+.+..++.+++|++|++++|.+ |+++..+++|++||+++|.+.+..+..++.+++|++|+ +++|.
T Consensus 32 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~--Ls~n~ 109 (549)
T 2z81_A 32 DLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN--LMGNP 109 (549)
T ss_dssp ECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE--CTTCC
T ss_pred ECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE--CCCCc
Confidence 4677888888778888888888888888873 46788888888888888888877777788888888888 88888
Q ss_pred CCC--Cc-cccCCCCCcEEEeeCCcCCCCCC-Chhhccccc-------cccccccchhhh--------------------
Q 041723 78 ENF--LP-SLGNLTKLNDLYLFGNDFSGKVP-DSLGDLLQL-------NYLTGEILVEIR-------------------- 126 (228)
Q Consensus 78 ~~~--~p-~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~~-------~~l~~~~~~~~~-------------------- 126 (228)
+.. .| .++.+++|++|++++|.+.+.+| ..++.++++ +.+.+..|..++
T Consensus 110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 189 (549)
T 2z81_A 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189 (549)
T ss_dssp CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHH
T ss_pred ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccch
Confidence 853 34 67788888888888887443444 455555552 233333443333
Q ss_pred ----cCCCCCEEeccCCcccc
Q 041723 127 ----KLTQLHILRLAENQLEG 143 (228)
Q Consensus 127 ----~l~~L~~L~ls~n~l~~ 143 (228)
.+++|+.|++++|.+.+
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 190 IFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp HHHHSTTTBSEEEEESCBCTT
T ss_pred hhHhhcccccEEEccCCcccc
Confidence 46677777777777654
No 61
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=4.2e-21 Score=157.98 Aligned_cols=205 Identities=22% Similarity=0.320 Sum_probs=116.5
Q ss_pred CCcCCcccccchhhhcccccccccccCCCCh---HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL---ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE 78 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~ 78 (228)
++++|++..+. .++.+++|+++++++|.+ ++ +..+++|++|++++|......+ .+..+++|++|+ +++|.+
T Consensus 94 ~L~~n~i~~~~--~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~--l~~~~~ 167 (347)
T 4fmz_A 94 YIGTNKITDIS--ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLT--VTESKV 167 (347)
T ss_dssp ECCSSCCCCCG--GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEE--CCSSCC
T ss_pred EccCCcccCch--HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEE--ecCCCc
Confidence 34556665542 466667777777776652 33 5556666666666664333222 245555555555 555555
Q ss_pred CCCccccCCCCCcEEEeeCCcCCCCCCC---------------------hhhccccccccc------cccchhhhcCCCC
Q 041723 79 NFLPSLGNLTKLNDLYLFGNDFSGKVPD---------------------SLGDLLQLNYLT------GEILVEIRKLTQL 131 (228)
Q Consensus 79 ~~~p~~~~l~~L~~L~l~~n~l~~~~p~---------------------~~~~l~~~~~l~------~~~~~~~~~l~~L 131 (228)
..++.+..+++|+.|++++|.+. .++. .+..++.+..+. ...+. +..+++|
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L 245 (347)
T 4fmz_A 168 KDVTPIANLTDLYSLSLNYNQIE-DISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQL 245 (347)
T ss_dssp CCCGGGGGCTTCSEEECTTSCCC-CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred CCchhhccCCCCCEEEccCCccc-ccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCC
Confidence 44444444555555555555444 2221 022333222111 11222 5566667
Q ss_pred CEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccc
Q 041723 132 HILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGS 211 (228)
Q Consensus 132 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l 211 (228)
++|++++|.+.+ + ..+..+++|+.|++++|.+++ + +.+..+++|+.|++++|++++..+.. +..+++|++|++
T Consensus 246 ~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~---~-~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L 318 (347)
T 4fmz_A 246 TWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD---I-SVLNNLSQLNSLFLNNNQLGNEDMEV-IGGLTNLTTLFL 318 (347)
T ss_dssp CEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC---C-GGGGGCTTCSEEECCSSCCCGGGHHH-HHTCTTCSEEEC
T ss_pred CEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC---C-hhhcCCCCCCEEECcCCcCCCcChhH-hhccccCCEEEc
Confidence 777777776663 2 346677777777777777763 3 34667777777777777777766666 677777788887
Q ss_pred cccccccCcc
Q 041723 212 VHETLASSHI 221 (228)
Q Consensus 212 ~~n~~~~~~~ 221 (228)
++|++++.+.
T Consensus 319 ~~n~l~~~~~ 328 (347)
T 4fmz_A 319 SQNHITDIRP 328 (347)
T ss_dssp CSSSCCCCGG
T ss_pred cCCccccccC
Confidence 7777776543
No 62
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=7.5e-21 Score=156.45 Aligned_cols=188 Identities=23% Similarity=0.313 Sum_probs=150.8
Q ss_pred hhcccccccccccCCCChH--HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcE
Q 041723 15 AYGTASNAMKTLLQSPSLA--NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLND 92 (228)
Q Consensus 15 ~~~~l~~l~~l~l~~~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~ 92 (228)
.++.+++|++++++++.+. ..+..+++|++|++++|.+.+..+ +..+++|+.++ +++|.+..++.+..+++|+.
T Consensus 150 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~--l~~n~l~~~~~~~~~~~L~~ 225 (347)
T 4fmz_A 150 PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFT--AYVNQITDITPVANMTRLNS 225 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEE--CCSSCCCCCGGGGGCTTCCE
T ss_pred chhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc--ccCCCccceee--cccCCCCCCchhhcCCcCCE
Confidence 3788889999999988732 237888999999999998876443 77888888888 88888877766778888999
Q ss_pred EEeeCCcCCCCCCChhhcccccccc-------ccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCcc
Q 041723 93 LYLFGNDFSGKVPDSLGDLLQLNYL-------TGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNL 165 (228)
Q Consensus 93 L~l~~n~l~~~~p~~~~~l~~~~~l-------~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 165 (228)
|++++|.++ .++. +..++.+..+ .+ + ..+..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+
T Consensus 226 L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l 299 (347)
T 4fmz_A 226 LKIGNNKIT-DLSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQL 299 (347)
T ss_dssp EECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCC
T ss_pred EEccCCccC-CCcc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcC
Confidence 999999887 4443 5555553333 22 2 457889999999999999984 4 4588999999999999999
Q ss_pred ccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccc
Q 041723 166 SGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLA 217 (228)
Q Consensus 166 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~ 217 (228)
++ ..+..+..+++|++|++++|++++..| +..+++|+++++++|.++
T Consensus 300 ~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 300 GN--EDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CG--GGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred CC--cChhHhhccccCCEEEccCCccccccC---hhhhhccceeehhhhccc
Confidence 87 678889999999999999999998766 568999999999999886
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=2.2e-21 Score=169.32 Aligned_cols=159 Identities=22% Similarity=0.212 Sum_probs=122.1
Q ss_pred CCcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
++++|.++.+.+..++.+++|++|++++|.+ ++.+.++++|++|++++|.+++..+.+|..+++|++|+ +++|.
T Consensus 34 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--L~~n~ 111 (570)
T 2z63_A 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV--AVETN 111 (570)
T ss_dssp ECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE--CTTSC
T ss_pred EccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc--ccccc
Confidence 5678888888888999999999999999973 45788899999999999998887778899999999999 99999
Q ss_pred CCCCc--cccCCCCCcEEEeeCCcCCC-CCCChhhcccccccc-------ccccchhhhcCCCC----CEEeccCCcccc
Q 041723 78 ENFLP--SLGNLTKLNDLYLFGNDFSG-KVPDSLGDLLQLNYL-------TGEILVEIRKLTQL----HILRLAENQLEG 143 (228)
Q Consensus 78 ~~~~p--~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~~~~l-------~~~~~~~~~~l~~L----~~L~ls~n~l~~ 143 (228)
+..++ .++.+++|++|++++|.+++ .+|..++.+++++.+ .+..+..++.+++| ..+++++|.+.+
T Consensus 112 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~ 191 (570)
T 2z63_A 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (570)
T ss_dssp CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee
Confidence 97776 68889999999999999885 468888877774433 34455666666666 677888777765
Q ss_pred cCccccccCCCCCEEEccCC
Q 041723 144 SVPSSIFELRNLRALDLSDN 163 (228)
Q Consensus 144 ~~~~~~~~l~~L~~L~l~~n 163 (228)
..|..+... +|+.+++++|
T Consensus 192 ~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 192 IQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp ECTTTTTTC-EEEEEEEESC
T ss_pred cCHHHhccC-cceeEecccc
Confidence 444444333 4555555544
No 64
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=6.4e-22 Score=154.94 Aligned_cols=177 Identities=18% Similarity=0.201 Sum_probs=123.3
Q ss_pred cccccccCCCC---hH-HHHhccCCCCeeecCCcc-CCCCcchhccCCcchHHHHHhhhh-cCCCCCc--cccCCCCCcE
Q 041723 21 NAMKTLLQSPS---LA-NLAEKLANLKVLHLGQVN-TASTVPYASANLSSLFSLLSLIAY-CKENFLP--SLGNLTKLND 92 (228)
Q Consensus 21 ~l~~l~l~~~~---l~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~~~l~~-~~~~~~p--~~~~l~~L~~ 92 (228)
+++++++++|. +| ..+..+++|++|++++|. ++...+.+|..+++|++|+ +++ |.+..++ .+..+++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~--l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE--IRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEE--EEEETTCCEECTTSEECCTTCCE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEE--CCCCCCeeEcCHHHhCCCCCCCE
Confidence 78888888887 33 367888899999999886 7666666888889999988 888 8887666 6778888999
Q ss_pred EEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCC---EEeccCC-cccccCccccccCCCCC-EEEccCCcccc
Q 041723 93 LYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLH---ILRLAEN-QLEGSVPSSIFELRNLR-ALDLSDNNLSG 167 (228)
Q Consensus 93 L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~---~L~ls~n-~l~~~~~~~~~~l~~L~-~L~l~~n~~~~ 167 (228)
|++++|.++ .+|. ++ .+++|+ +|++++| .+.+..+..|..+++|+ .+++++|.++
T Consensus 110 L~l~~n~l~-~lp~-~~-----------------~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~- 169 (239)
T 2xwt_C 110 LGIFNTGLK-MFPD-LT-----------------KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT- 169 (239)
T ss_dssp EEEEEECCC-SCCC-CT-----------------TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-
T ss_pred EeCCCCCCc-cccc-cc-----------------cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-
Confidence 999998887 3554 32 334444 7777777 66644344566677777 7777777766
Q ss_pred CCCcchhhhcCCCCCEEEccCCc-cccccCccccCCC-CCcccccccccccccCccc
Q 041723 168 TGDLNMVLLNLESLTALVLSSNK-LSLLAGTTVNTNL-PNFTIIGSVHETLASSHIF 222 (228)
Q Consensus 168 ~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l-~~L~~l~l~~n~~~~~~~~ 222 (228)
.+|.......+|+++++++|+ +++..+.. +..+ ++|+++++++|+++..+..
T Consensus 170 --~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~-~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 170 --SVQGYAFNGTKLDAVYLNKNKYLTVIDKDA-FGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp --EECTTTTTTCEEEEEECTTCTTCCEECTTT-TTTCSBCCSEEECTTCCCCCCCCT
T ss_pred --ccCHhhcCCCCCCEEEcCCCCCcccCCHHH-hhccccCCcEEECCCCccccCChh
Confidence 344433223667777777774 66555555 6666 7777777777777665543
No 65
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=5.1e-21 Score=166.47 Aligned_cols=187 Identities=19% Similarity=0.129 Sum_probs=133.3
Q ss_pred cCCcccccchhhhcccccccccccCCCChH----H---HHhccCCCCeeecCCccCCCCcc--hhccCCcchHHHHHhhh
Q 041723 4 HGTRKKKIATAAYGTASNAMKTLLQSPSLA----N---LAEKLANLKVLHLGQVNTASTVP--YASANLSSLFSLLSLIA 74 (228)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~----~---~~~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~~~l~ 74 (228)
++|++..++...++.+++|+++++++|.+. + .+..+++|++|++++|.+++..+ ..+..+++|++|+ ++
T Consensus 318 ~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~--Ls 395 (549)
T 2z81_A 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD--IS 395 (549)
T ss_dssp ESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEE--CT
T ss_pred ccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEE--CC
Confidence 345555555555556677777777777632 1 24556677777777777665432 4466677777777 77
Q ss_pred hcCCCCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCC
Q 041723 75 YCKENFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELR 153 (228)
Q Consensus 75 ~~~~~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~ 153 (228)
+|.+..+| .+..+++|++|++++|.++ .+|.. + .++|+.|++++|.+++. + ..++
T Consensus 396 ~N~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~-----------------~--~~~L~~L~Ls~N~l~~~-~---~~l~ 451 (549)
T 2z81_A 396 RNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTC-----------------I--PQTLEVLDVSNNNLDSF-S---LFLP 451 (549)
T ss_dssp TCCCCCCCSCCCCCTTCCEEECTTSCCS-CCCTT-----------------S--CTTCSEEECCSSCCSCC-C---CCCT
T ss_pred CCCCccCChhhcccccccEEECCCCCcc-cccch-----------------h--cCCceEEECCCCChhhh-c---ccCC
Confidence 77776666 6666777777777777765 33321 1 25799999999999853 3 5788
Q ss_pred CCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccC
Q 041723 154 NLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTK 226 (228)
Q Consensus 154 ~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~ 226 (228)
+|+.|++++|.++ .+|. ...+++|++|++++|++++.++.. +..+++|+++++++|. +.|.|+
T Consensus 452 ~L~~L~Ls~N~l~---~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~l~~N~-----~~~~~~ 514 (549)
T 2z81_A 452 RLQELYISRNKLK---TLPD-ASLFPVLLVMKISRNQLKSVPDGI-FDRLTSLQKIWLHTNP-----WDCSCP 514 (549)
T ss_dssp TCCEEECCSSCCS---SCCC-GGGCTTCCEEECCSSCCCCCCTTG-GGGCTTCCEEECCSSC-----BCCCHH
T ss_pred hhcEEECCCCccC---cCCC-cccCccCCEEecCCCccCCcCHHH-HhcCcccCEEEecCCC-----ccCCCc
Confidence 9999999999998 5776 467899999999999999988887 8899999999966665 456664
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=3.6e-22 Score=162.83 Aligned_cols=204 Identities=18% Similarity=0.083 Sum_probs=158.9
Q ss_pred cCCcccccchhhhcccccccccccCCCC----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCC
Q 041723 4 HGTRKKKIATAAYGTASNAMKTLLQSPS----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKEN 79 (228)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~l~~l~l~~~~----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~ 79 (228)
+.+.+.......+..++++++|++++|. .|+.+..+++|++|++++|.+++..+ +..+++|++|+ +++|.+.
T Consensus 18 s~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~--Ls~n~l~ 93 (317)
T 3o53_A 18 TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLD--LNNNYVQ 93 (317)
T ss_dssp CTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEE--CCSSEEE
T ss_pred cccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEE--CcCCccc
Confidence 3444555555666777799999999997 35688899999999999998876554 88899999999 9999886
Q ss_pred CCccccCCCCCcEEEeeCCcCCCCCCChhhcccc----ccccccccchhhhcCCCCCEEeccCCcccccCcccc-ccCCC
Q 041723 80 FLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ----LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSI-FELRN 154 (228)
Q Consensus 80 ~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~----~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~-~~l~~ 154 (228)
.++. .++|++|++++|.+++..+..+..+.. .+.+.+..+..++.+++|++|++++|.+.+..+..+ ..+++
T Consensus 94 ~l~~---~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 170 (317)
T 3o53_A 94 ELLV---GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (317)
T ss_dssp EEEE---CTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred cccC---CCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence 6662 378999999999988544444444433 455566666678889999999999999986656655 47899
Q ss_pred CCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCc
Q 041723 155 LRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSH 220 (228)
Q Consensus 155 L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 220 (228)
|+.|++++|.+++ ++. ...+++|++|++++|.+++.++ . +..+++|++|++++|+++..+
T Consensus 171 L~~L~L~~N~l~~---~~~-~~~l~~L~~L~Ls~N~l~~l~~-~-~~~l~~L~~L~L~~N~l~~l~ 230 (317)
T 3o53_A 171 LEHLNLQYNFIYD---VKG-QVVFAKLKTLDLSSNKLAFMGP-E-FQSAAGVTWISLRNNKLVLIE 230 (317)
T ss_dssp CCEEECTTSCCCE---EEC-CCCCTTCCEEECCSSCCCEECG-G-GGGGTTCSEEECTTSCCCEEC
T ss_pred CCEEECCCCcCcc---ccc-ccccccCCEEECCCCcCCcchh-h-hcccCcccEEECcCCcccchh
Confidence 9999999999984 444 3458899999999999987644 4 778999999999999998644
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1.1e-21 Score=153.70 Aligned_cols=187 Identities=18% Similarity=0.163 Sum_probs=156.1
Q ss_pred CCcCCcccccchhhhcccccccccccCCCC-h---H-HHHhccCCCCeeecCC-ccCCCCcchhccCCcchHHHHHhhhh
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS-L---A-NLAEKLANLKVLHLGQ-VNTASTVPYASANLSSLFSLLSLIAY 75 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~-l---~-~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~~~l~~ 75 (228)
++++|+++.+.+..++.+++|+++++++|. + + ..+..+++|++|++++ |.+++..+..|..+++|++|+ +++
T Consensus 37 ~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~--l~~ 114 (239)
T 2xwt_C 37 KLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG--IFN 114 (239)
T ss_dssp EEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE--EEE
T ss_pred EEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe--CCC
Confidence 467899999999999999999999999995 3 4 4788999999999998 899877778899999999999 999
Q ss_pred cCCCCCccccCCCCCc---EEEeeCC-cCCCCCCChhhccccccccccccchhhhcCCCCC-EEeccCCcccccCccccc
Q 041723 76 CKENFLPSLGNLTKLN---DLYLFGN-DFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLH-ILRLAENQLEGSVPSSIF 150 (228)
Q Consensus 76 ~~~~~~p~~~~l~~L~---~L~l~~n-~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~-~L~ls~n~l~~~~~~~~~ 150 (228)
|.+..+|.+..+++|+ +|++++| .++ .+|.. .+..+++|+ .+++++|.+. .+|....
T Consensus 115 n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~-~i~~~----------------~~~~l~~L~~~L~l~~n~l~-~i~~~~~ 176 (239)
T 2xwt_C 115 TGLKMFPDLTKVYSTDIFFILEITDNPYMT-SIPVN----------------AFQGLCNETLTLKLYNNGFT-SVQGYAF 176 (239)
T ss_dssp ECCCSCCCCTTCCBCCSEEEEEEESCTTCC-EECTT----------------TTTTTBSSEEEEECCSCCCC-EECTTTT
T ss_pred CCCccccccccccccccccEEECCCCcchh-hcCcc----------------cccchhcceeEEEcCCCCCc-ccCHhhc
Confidence 9998898888888888 9999999 887 33322 356788999 9999999998 5665444
Q ss_pred cCCCCCEEEccCCc-cccCCCcchhhhcC-CCCCEEEccCCccccccCccccCCCCCccccccccc
Q 041723 151 ELRNLRALDLSDNN-LSGTGDLNMVLLNL-ESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHE 214 (228)
Q Consensus 151 ~l~~L~~L~l~~n~-~~~~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n 214 (228)
..++|+.|++++|. +++ ..+..+.++ ++|+.+++++|++++.++. .+++|+.|+++++
T Consensus 177 ~~~~L~~L~L~~n~~l~~--i~~~~~~~l~~~L~~L~l~~N~l~~l~~~----~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 177 NGTKLDAVYLNKNKYLTV--IDKDAFGGVYSGPSLLDVSQTSVTALPSK----GLEHLKELIARNT 236 (239)
T ss_dssp TTCEEEEEECTTCTTCCE--ECTTTTTTCSBCCSEEECTTCCCCCCCCT----TCTTCSEEECTTC
T ss_pred CCCCCCEEEcCCCCCccc--CCHHHhhccccCCcEEECCCCccccCChh----HhccCceeeccCc
Confidence 44899999999995 884 345678888 9999999999999876443 4777888887654
No 68
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=8.9e-21 Score=152.88 Aligned_cols=176 Identities=26% Similarity=0.300 Sum_probs=147.1
Q ss_pred hhcccccccccccCCCChH--HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcE
Q 041723 15 AYGTASNAMKTLLQSPSLA--NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLND 92 (228)
Q Consensus 15 ~~~~l~~l~~l~l~~~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~ 92 (228)
.++.++++++++++++.+. +.+..+++|++|++++|.+.+..+ +..+++|++|+ +++|.+..+|.+..+++|++
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~--l~~n~l~~~~~l~~l~~L~~ 116 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLF--LDENKVKDLSSLKDLKKLKS 116 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE--CCSSCCCCGGGGTTCTTCCE
T ss_pred chhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEE--CCCCcCCCChhhccCCCCCE
Confidence 3456788999999998742 358889999999999999987554 88999999999 99999988888889999999
Q ss_pred EEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcc
Q 041723 93 LYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLN 172 (228)
Q Consensus 93 L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p 172 (228)
|++++|.+++ ++ .+..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+++ ++
T Consensus 117 L~L~~n~i~~-~~------------------~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~---~~ 172 (291)
T 1h6t_A 117 LSLEHNGISD-IN------------------GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISD---IV 172 (291)
T ss_dssp EECTTSCCCC-CG------------------GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC---CG
T ss_pred EECCCCcCCC-Ch------------------hhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCcccc---ch
Confidence 9999999873 22 35678899999999999984 3 568899999999999999985 44
Q ss_pred hhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723 173 MVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF 222 (228)
Q Consensus 173 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 222 (228)
+ +..+++|++|++++|.+++.. . +..+++|+.|++++|+++..+..
T Consensus 173 ~-l~~l~~L~~L~L~~N~i~~l~--~-l~~l~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 173 P-LAGLTKLQNLYLSKNHISDLR--A-LAGLKNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp G-GTTCTTCCEEECCSSCCCBCG--G-GTTCTTCSEEEEEEEEEECCCEE
T ss_pred h-hcCCCccCEEECCCCcCCCCh--h-hccCCCCCEEECcCCcccCCccc
Confidence 4 888999999999999998752 4 77899999999999998876654
No 69
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=1.4e-20 Score=152.94 Aligned_cols=184 Identities=25% Similarity=0.345 Sum_probs=147.9
Q ss_pred cccccccCCCChHH--HHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCC
Q 041723 21 NAMKTLLQSPSLAN--LAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGN 98 (228)
Q Consensus 21 ~l~~l~l~~~~l~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n 98 (228)
+.....+....+.+ ...++++|++|++++|.+.. ++ .+..+++|++|+ +++|.+..++.+..+++|++|++++|
T Consensus 20 ~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~--L~~n~i~~~~~~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 20 NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLE--LKDNQITDLAPLKNLTKITELELSGN 95 (308)
T ss_dssp HHHHHHTTCSSTTSEECHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEE--CCSSCCCCCGGGTTCCSCCEEECCSC
T ss_pred HHHHHHhCCCCcCceecHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEE--ccCCcCCCChhHccCCCCCEEEccCC
Confidence 34445566665443 45678899999999999876 33 688999999999 99999988877899999999999999
Q ss_pred cCCCCCCChhhcccccccc-------ccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCc
Q 041723 99 DFSGKVPDSLGDLLQLNYL-------TGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDL 171 (228)
Q Consensus 99 ~l~~~~p~~~~~l~~~~~l-------~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 171 (228)
.++ .++ .+..++.+..+ .+ ++ .+..+++|++|++++|.+.+ ++. +..+++|+.|++++|.+++ +
T Consensus 96 ~l~-~~~-~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~---~ 166 (308)
T 1h6u_A 96 PLK-NVS-AIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD---L 166 (308)
T ss_dssp CCS-CCG-GGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC---C
T ss_pred cCC-Cch-hhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC---C
Confidence 998 444 56666664433 33 33 37889999999999999984 443 8899999999999999984 5
Q ss_pred chhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCcc
Q 041723 172 NMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHI 221 (228)
Q Consensus 172 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 221 (228)
+. +..+++|+.|++++|.+++..+ +..+++|++|++++|++++.+.
T Consensus 167 ~~-l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~~ 212 (308)
T 1h6u_A 167 TP-LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVSP 212 (308)
T ss_dssp GG-GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCGG
T ss_pred hh-hcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCccCcccc
Confidence 55 8889999999999999987654 6789999999999999987654
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=6.2e-21 Score=152.37 Aligned_cols=183 Identities=21% Similarity=0.198 Sum_probs=148.8
Q ss_pred hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEeeCCcCCCCCCChhh
Q 041723 32 LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLG 109 (228)
Q Consensus 32 l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~ 109 (228)
+|..+. +.+++|++++|.+++..+..+..+++|++|+ +++|.+..++ .+..+++|++|++++|.+++..+..+.
T Consensus 22 ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~--l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLD--LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEE--CTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEE--CCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence 555443 5799999999999887777899999999999 9999997666 789999999999999999866667777
Q ss_pred ccccccc-------cccccchhhhcCCCCCEEeccCCccccc-CccccccCCCCCEEEccCCccccCCCcchhhhcCCCC
Q 041723 110 DLLQLNY-------LTGEILVEIRKLTQLHILRLAENQLEGS-VPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESL 181 (228)
Q Consensus 110 ~l~~~~~-------l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L 181 (228)
.++.+.. +.+..+..++.+++|++|++++|.+.+. +|..+..+++|+.|++++|.+++ ..+..+..+.++
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L 175 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS--IYCTDLRVLHQM 175 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE--ECGGGGHHHHTC
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc--CCHHHhhhhhhc
Confidence 7766443 3344444678899999999999999853 58889999999999999999986 445667666666
Q ss_pred C----EEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723 182 T----ALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF 222 (228)
Q Consensus 182 ~----~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 222 (228)
+ ++++++|.+++..+.. +. ..+|++|++++|++++.+..
T Consensus 176 ~~l~l~L~ls~n~l~~~~~~~-~~-~~~L~~L~L~~n~l~~~~~~ 218 (276)
T 2z62_A 176 PLLNLSLDLSLNPMNFIQPGA-FK-EIRLKELALDTNQLKSVPDG 218 (276)
T ss_dssp TTCCEEEECCSSCCCEECTTS-SC-SCCEEEEECCSSCCSCCCTT
T ss_pred cccceeeecCCCcccccCccc-cC-CCcccEEECCCCceeecCHh
Confidence 6 8999999999876655 44 45899999999999987654
No 71
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=1.6e-20 Score=148.11 Aligned_cols=168 Identities=27% Similarity=0.322 Sum_probs=140.5
Q ss_pred CcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723 3 HHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE 78 (228)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~ 78 (228)
.+++.+..++.. +. .+++.|++++|.+ +..+..+++|++|++++|.+.+..+..+..+++|++|+ +++|.+
T Consensus 21 ~~~~~l~~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--L~~n~l 95 (251)
T 3m19_A 21 CQGKSLDSVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG--LANNQL 95 (251)
T ss_dssp CTTCCCSSCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE--CTTSCC
T ss_pred cCCCCccccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE--CCCCcc
Confidence 345566665542 22 4889999999983 45788999999999999999998888899999999999 999999
Q ss_pred CCCc--cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCC
Q 041723 79 NFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLR 156 (228)
Q Consensus 79 ~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 156 (228)
..+| .+..+++|++|++++|.++ .+|.. .+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~----------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSG----------------VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC-CCCTT----------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccChhHhcccCCCCEEEcCCCcCC-CcChh----------------HhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence 7776 7789999999999999998 44432 245788999999999999965555789999999
Q ss_pred EEEccCCccccCCCcchhhhcCCCCCEEEccCCccccc
Q 041723 157 ALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194 (228)
Q Consensus 157 ~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 194 (228)
.|++++|.+++ ..+..+..+++|+++++++|++...
T Consensus 159 ~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 159 TLSLSTNQLQS--VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp EEECCSSCCSC--CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred EEECCCCcCCc--cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999999996 5556788899999999999999765
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.3e-21 Score=168.50 Aligned_cols=188 Identities=19% Similarity=0.095 Sum_probs=152.8
Q ss_pred ccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEe
Q 041723 20 SNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYL 95 (228)
Q Consensus 20 ~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l 95 (228)
+++++|++++|.+ |..+..+++|++|++++|.+++..| +..+++|++|+ +++|.+..+|. .++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~--Ls~N~l~~l~~---~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLD--LNNNYVQELLV---GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEE--CCSSEEEEEEE---CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEE--ecCCcCCCCCC---CCCcCEEEC
Confidence 3899999999873 5688899999999999998877555 88899999999 99998876662 278999999
Q ss_pred eCCcCCCCCCChhhcccc----ccccccccchhhhcCCCCCEEeccCCcccccCccccc-cCCCCCEEEccCCccccCCC
Q 041723 96 FGNDFSGKVPDSLGDLLQ----LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIF-ELRNLRALDLSDNNLSGTGD 170 (228)
Q Consensus 96 ~~n~l~~~~p~~~~~l~~----~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~ 170 (228)
++|.+++..+..+..+.. .+.+.+..|..++.+++|++|++++|.+.+..|..+. .+++|+.|++++|.+++
T Consensus 107 ~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~--- 183 (487)
T 3oja_A 107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--- 183 (487)
T ss_dssp CSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE---
T ss_pred cCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc---
Confidence 999998654444444443 4566677787888999999999999999977777775 78999999999999985
Q ss_pred cchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCc
Q 041723 171 LNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSH 220 (228)
Q Consensus 171 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 220 (228)
+|. ...+++|+.|++++|.+++.++ . +..+++|+.|++++|.+++.|
T Consensus 184 ~~~-~~~l~~L~~L~Ls~N~l~~~~~-~-~~~l~~L~~L~Ls~N~l~~lp 230 (487)
T 3oja_A 184 VKG-QVVFAKLKTLDLSSNKLAFMGP-E-FQSAAGVTWISLRNNKLVLIE 230 (487)
T ss_dssp EEC-CCCCTTCCEEECCSSCCCEECG-G-GGGGTTCSEEECTTSCCCEEC
T ss_pred ccc-cccCCCCCEEECCCCCCCCCCH-h-HcCCCCccEEEecCCcCcccc
Confidence 344 3458999999999999998655 4 778999999999999998744
No 73
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.83 E-value=8.5e-20 Score=156.14 Aligned_cols=190 Identities=25% Similarity=0.266 Sum_probs=106.1
Q ss_pred hcccccccccccCCCChH--HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEE
Q 041723 16 YGTASNAMKTLLQSPSLA--NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDL 93 (228)
Q Consensus 16 ~~~l~~l~~l~l~~~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L 93 (228)
++.+++|+++++++|.+. ..+..+++|++|++++|.+.+. ..+..+++|++|+ +++|.+..++.+..+++|+.|
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~--l~~n~l~~~~~~~~l~~L~~L 270 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLD--LANNQISNLAPLSGLTKLTEL 270 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE--CCSSCCCCCGGGTTCTTCSEE
T ss_pred hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc--hhhhcCCCCCEEE--CCCCccccchhhhcCCCCCEE
Confidence 444445555555544421 0134445555555555554432 2344555555555 555555444445555556666
Q ss_pred EeeCCcCCCCCCChhhcccccc-------ccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccc
Q 041723 94 YLFGNDFSGKVPDSLGDLLQLN-------YLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLS 166 (228)
Q Consensus 94 ~l~~n~l~~~~p~~~~~l~~~~-------~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 166 (228)
++++|.+++ ++. +..++.+. .+.+..+ ++.+++|+.|++++|.+.+..| +..+++|+.|++++|.++
T Consensus 271 ~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 271 KLGANQISN-ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp ECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ECCCCccCc-ccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC
Confidence 666655552 222 33333322 2222222 5566677777777777664433 566777777777777766
Q ss_pred cCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723 167 GTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF 222 (228)
Q Consensus 167 ~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 222 (228)
+ + +.+..+++|+.|++++|++++..| +..+++|++|++++|+++..|..
T Consensus 345 ~---~-~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~~p~~ 393 (466)
T 1o6v_A 345 D---V-SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTNAPVN 393 (466)
T ss_dssp C---C-GGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEECCCBC
T ss_pred C---c-hhhccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCCcccCCchh
Confidence 4 2 346677777777777777776655 45677777777777777765543
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=2.2e-20 Score=150.44 Aligned_cols=181 Identities=19% Similarity=0.102 Sum_probs=132.5
Q ss_pred CcCCcccccchhhhcccccccccccCCCCh----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723 3 HHGTRKKKIATAAYGTASNAMKTLLQSPSL----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE 78 (228)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~ 78 (228)
.+++.++.++... . ++++.|++++|.+ +..+..+++|++|++++|.+++..+ ...+++|++|+ +++|.+
T Consensus 17 ~~~~~l~~ip~~~-~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~--Ls~N~l 89 (290)
T 1p9a_G 17 CDKRNLTALPPDL-P--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLD--LSHNQL 89 (290)
T ss_dssp CTTSCCSSCCSCC-C--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEE--CCSSCC
T ss_pred CCCCCCCcCCCCC-C--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEE--CCCCcC
Confidence 3455555554322 1 4677777777763 4567777788888888777765332 26677777777 888877
Q ss_pred CCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccc-------cccccccchhhhcCCCCCEEeccCCcccccCccccc
Q 041723 79 NFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL-------NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIF 150 (228)
Q Consensus 79 ~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~-------~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~ 150 (228)
..+| .+..+++|++|++++|++++..+..+..++++ |.+.+..+..+..+++|+.|++++|.++...+..+.
T Consensus 90 ~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 169 (290)
T 1p9a_G 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169 (290)
T ss_dssp SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT
T ss_pred CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhc
Confidence 7777 67777778888888887774444556665553 333444445567899999999999999954445678
Q ss_pred cCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCcccc
Q 041723 151 ELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSL 193 (228)
Q Consensus 151 ~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~ 193 (228)
.+++|+.|++++|.++ .+|..+.....|+.+++++|++..
T Consensus 170 ~l~~L~~L~L~~N~l~---~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 170 GLENLDTLLLQENSLY---TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TCTTCCEEECCSSCCC---CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CcCCCCEEECCCCcCC---ccChhhcccccCCeEEeCCCCccC
Confidence 8999999999999998 688888888999999999999864
No 75
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=5.7e-20 Score=161.69 Aligned_cols=176 Identities=26% Similarity=0.292 Sum_probs=145.5
Q ss_pred hcccccccccccCCCChH--HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEE
Q 041723 16 YGTASNAMKTLLQSPSLA--NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDL 93 (228)
Q Consensus 16 ~~~l~~l~~l~l~~~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L 93 (228)
+..+.+|+.|+++++.+. +.+..+++|+.|++++|.+.+..+ +..+++|+.|+ +++|.+..+|.+..+++|+.|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~--Ls~N~l~~l~~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF--LDENKIKDLSSLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE--CCSSCCCCCTTSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE--CcCCCCCCChhhccCCCCCEE
Confidence 567788999999988742 368889999999999999987555 88999999999 999999888888899999999
Q ss_pred EeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcch
Q 041723 94 YLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNM 173 (228)
Q Consensus 94 ~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~ 173 (228)
++++|.+++ ++ .+..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+++ +++
T Consensus 115 ~Ls~N~l~~-l~------------------~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~---~~~ 170 (605)
T 1m9s_A 115 SLEHNGISD-IN------------------GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISD---IVP 170 (605)
T ss_dssp ECTTSCCCC-CG------------------GGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCC---CGG
T ss_pred EecCCCCCC-Cc------------------cccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCC---chh
Confidence 999999873 22 25678889999999999984 3 568889999999999999885 334
Q ss_pred hhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCcccc
Q 041723 174 VLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFC 223 (228)
Q Consensus 174 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 223 (228)
+..+++|+.|+|++|.+++. .. +..+++|+.|++++|++...++..
T Consensus 171 -l~~l~~L~~L~Ls~N~i~~l--~~-l~~l~~L~~L~L~~N~l~~~p~~~ 216 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDVLELFSQECLNKPINH 216 (605)
T ss_dssp -GTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSEEECCSEEEECCCCCC
T ss_pred -hccCCCCCEEECcCCCCCCC--hH-HccCCCCCEEEccCCcCcCCcccc
Confidence 88889999999999999875 34 778999999999999988876543
No 76
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.82 E-value=6.8e-20 Score=156.75 Aligned_cols=70 Identities=17% Similarity=0.169 Sum_probs=41.8
Q ss_pred CCcCCcccccchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE 78 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~ 78 (228)
++++|.+..+.+ ++.+++|+++++++|. +++ +.++++|++|++++|.+.+..+ +..+++|++|+ +++|.+
T Consensus 74 ~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~--l~~n~l 146 (466)
T 1o6v_A 74 NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLE--LSSNTI 146 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEE--EEEEEE
T ss_pred ECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEE--CCCCcc
Confidence 355666666654 6666777777777665 233 6666666666666666655322 55555555555 555554
No 77
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=1.1e-19 Score=155.20 Aligned_cols=194 Identities=21% Similarity=0.175 Sum_probs=121.2
Q ss_pred CcCCcccccchhhhcccccccccccCCCChHH-HHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCC
Q 041723 3 HHGTRKKKIATAAYGTASNAMKTLLQSPSLAN-LAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFL 81 (228)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~ 81 (228)
++++.+..++ .++.+++|+++++++|.+.. .++.+++|++|++++|.+++. + ++.+++|++|+ +++|.+..+
T Consensus 49 Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~--L~~N~l~~l 121 (457)
T 3bz5_A 49 CHNSSITDMT--GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN--CDTNKLTKL 121 (457)
T ss_dssp CCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE--CCSSCCSCC
T ss_pred ccCCCcccCh--hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE--CCCCcCCee
Confidence 4555565553 46666677777777666321 156666777777777766653 2 66667777777 777777555
Q ss_pred ccccCCCCCcEEEeeCCcCCCCCCChhhcccccccc-------ccccchhhhcCCCCCEEeccCCcccccCccccccCCC
Q 041723 82 PSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYL-------TGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRN 154 (228)
Q Consensus 82 p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l-------~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~ 154 (228)
| ++.+++|++|++++|.+++ ++ ++.++.+..+ .+.+ .++.+++|+.|++++|.+++ +| +..+++
T Consensus 122 ~-~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~ 192 (457)
T 3bz5_A 122 D-VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKL 192 (457)
T ss_dssp C-CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTT
T ss_pred c-CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCC
Confidence 4 5666777777777777764 32 3333332222 1222 25566777777777777774 44 666777
Q ss_pred CCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCcc
Q 041723 155 LRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHI 221 (228)
Q Consensus 155 L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 221 (228)
|+.|++++|.+++ + .+..+++|++|++++|++++. | +..+++|++|++++|++++.++
T Consensus 193 L~~L~l~~N~l~~---~--~l~~l~~L~~L~Ls~N~l~~i-p---~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 193 LNRLNCDTNNITK---L--DLNQNIQLTFLDCSSNKLTEI-D---VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp CCEEECCSSCCSC---C--CCTTCTTCSEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCCCC
T ss_pred CCEEECcCCcCCe---e--ccccCCCCCEEECcCCccccc-C---ccccCCCCEEEeeCCcCCCcCH
Confidence 7777777777764 2 256667777777777777763 3 4566777777777777766554
No 78
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=8e-20 Score=141.48 Aligned_cols=144 Identities=21% Similarity=0.224 Sum_probs=76.5
Q ss_pred CeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccc
Q 041723 43 KVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGE 120 (228)
Q Consensus 43 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~ 120 (228)
+.++.+++.++. +|..+. ++++.|+ +++|.+..++ .+..+++|+.|++++|.+++..|.
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~--l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~-------------- 74 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIR--LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD-------------- 74 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEE--CCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT--------------
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEE--CCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH--------------
Confidence 345555555443 232221 3455555 5555554444 455556666666666655522222
Q ss_pred cchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCcccc
Q 041723 121 ILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVN 200 (228)
Q Consensus 121 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 200 (228)
.+..+++|+.|++++|.++...+..|..+++|+.|++++|.+++ ..|..+..+++|++|++++|.+++..+.. +
T Consensus 75 ---~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~ 148 (220)
T 2v9t_B 75 ---AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC--LRVDAFQDLHNLNLLSLYDNKLQTIAKGT-F 148 (220)
T ss_dssp ---TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTTT-T
T ss_pred ---HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE--eCHHHcCCCCCCCEEECCCCcCCEECHHH-H
Confidence 23445556666666666653222334556666666666666654 34455555666666666666666555554 5
Q ss_pred CCCCCcccccc
Q 041723 201 TNLPNFTIIGS 211 (228)
Q Consensus 201 ~~l~~L~~l~l 211 (228)
..+++|+++++
T Consensus 149 ~~l~~L~~L~L 159 (220)
T 2v9t_B 149 SPLRAIQTMHL 159 (220)
T ss_dssp TTCTTCCEEEC
T ss_pred hCCCCCCEEEe
Confidence 55666666663
No 79
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=4.3e-20 Score=140.52 Aligned_cols=155 Identities=18% Similarity=0.310 Sum_probs=131.2
Q ss_pred HhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhcccccc
Q 041723 36 AEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLN 115 (228)
Q Consensus 36 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~ 115 (228)
...+++|++|++++|.+.. ++ .+..+++|++|+ +++|.+..++.+..+++|++|++++|.+++..+.
T Consensus 40 ~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~--l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--------- 106 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTD-LT-GIEYAHNIKDLT--INNIHATNYNPISGLSNLERLRIMGKDVTSDKIP--------- 106 (197)
T ss_dssp HHHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEE--EESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSC---------
T ss_pred hhhcCCccEEeccCCCccC-hH-HHhcCCCCCEEE--ccCCCCCcchhhhcCCCCCEEEeECCccCcccCh---------
Confidence 3667899999999999874 45 688999999999 9999888888888999999999999998743343
Q ss_pred ccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCc-cccCCCcchhhhcCCCCCEEEccCCccccc
Q 041723 116 YLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNN-LSGTGDLNMVLLNLESLTALVLSSNKLSLL 194 (228)
Q Consensus 116 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 194 (228)
.++.+++|++|++++|.+.+..+..+..+++|+.|++++|. ++ .+| .+..+++|++|++++|.+++.
T Consensus 107 --------~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~---~~~-~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 107 --------NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT---DIM-PLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp --------CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC---CCG-GGGGCSSCCEEECTTBCCCCC
T ss_pred --------hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc---ccH-hhcCCCCCCEEECCCCCCcCh
Confidence 35678899999999999997778889999999999999998 66 556 588999999999999999875
Q ss_pred cCccccCCCCCccccccccccccc
Q 041723 195 AGTTVNTNLPNFTIIGSVHETLAS 218 (228)
Q Consensus 195 ~~~~~~~~l~~L~~l~l~~n~~~~ 218 (228)
. . +..+++|++|++++|++++
T Consensus 175 ~--~-l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 175 R--G-IEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp T--T-GGGCSSCCEEEECBC----
T ss_pred H--H-hccCCCCCEEEeeCcccCC
Confidence 4 4 7889999999999999875
No 80
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.1e-20 Score=156.81 Aligned_cols=175 Identities=24% Similarity=0.263 Sum_probs=139.7
Q ss_pred cccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhcc-CCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEee
Q 041723 23 MKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASA-NLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLF 96 (228)
Q Consensus 23 ~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~ 96 (228)
..++++++. +|..+. ..+++|++++|.+++..+..+. .+++|++|+ +++|.+..++ .+..+++|++|+++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~--L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLL--LSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEE--CCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEE--CCCCcCCccChhhccCCCCCCEEECC
Confidence 456676665 455443 4689999999999887777777 899999999 9999997776 68999999999999
Q ss_pred CCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhh-
Q 041723 97 GNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVL- 175 (228)
Q Consensus 97 ~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~- 175 (228)
+|.++ .++. ..+..+++|+.|++++|.+....|..|..+++|+.|++++|.+++ +|..+
T Consensus 97 ~N~l~-~~~~----------------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~---l~~~~~ 156 (361)
T 2xot_A 97 SNHLH-TLDE----------------FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR---FPVELI 156 (361)
T ss_dssp SSCCC-EECT----------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS---CCGGGT
T ss_pred CCcCC-cCCH----------------HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe---eCHHHh
Confidence 99987 3332 235678899999999999997668889999999999999999984 55543
Q ss_pred ---hcCCCCCEEEccCCccccccCccccCCCCCc--ccccccccccccCccccccCC
Q 041723 176 ---LNLESLTALVLSSNKLSLLAGTTVNTNLPNF--TIIGSVHETLASSHIFCTTKI 227 (228)
Q Consensus 176 ---~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~l~l~~n~~~~~~~~~~~~~ 227 (228)
..+++|+.|+|++|++++..+.. +..++.+ +.++ +.++++.|+|++
T Consensus 157 ~~~~~l~~L~~L~L~~N~l~~l~~~~-~~~l~~~~l~~l~-----l~~N~~~C~C~l 207 (361)
T 2xot_A 157 KDGNKLPKLMLLDLSSNKLKKLPLTD-LQKLPAWVKNGLY-----LHNNPLECDCKL 207 (361)
T ss_dssp C----CTTCCEEECCSSCCCCCCHHH-HHHSCHHHHTTEE-----CCSSCEECCHHH
T ss_pred cCcccCCcCCEEECCCCCCCccCHHH-hhhccHhhcceEE-----ecCCCccCCcCc
Confidence 56899999999999999876666 7777763 6777 666777788853
No 81
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.80 E-value=3e-19 Score=152.49 Aligned_cols=190 Identities=20% Similarity=0.132 Sum_probs=157.0
Q ss_pred ccchhhhcccccccccccCCCChH--HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCC
Q 041723 10 KIATAAYGTASNAMKTLLQSPSLA--NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNL 87 (228)
Q Consensus 10 ~~~~~~~~~l~~l~~l~l~~~~l~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l 87 (228)
...+..++.+++++++++++|.+. +.+..+++|++|++++|.+++. + ++.+++|++|+ +++|.+..++ ++.+
T Consensus 32 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~--Ls~N~l~~~~-~~~l 105 (457)
T 3bz5_A 32 ATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLA--CDSNKLTNLD-VTPL 105 (457)
T ss_dssp TTSEEEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEE--CCSSCCSCCC-CTTC
T ss_pred cccccChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEE--CcCCCCceee-cCCC
Confidence 344557788999999999999842 2688999999999999999875 3 88999999999 9999997776 7889
Q ss_pred CCCcEEEeeCCcCCCCCCChhhcccccc-------ccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEc
Q 041723 88 TKLNDLYLFGNDFSGKVPDSLGDLLQLN-------YLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDL 160 (228)
Q Consensus 88 ~~L~~L~l~~n~l~~~~p~~~~~l~~~~-------~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l 160 (228)
++|++|++++|.+++ +| ++.++.+. .+.+. .++.+++|++|++++|...+.+ .+..+++|+.|++
T Consensus 106 ~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 999999999999985 54 55555533 33342 2678899999999999655455 4788999999999
Q ss_pred cCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723 161 SDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF 222 (228)
Q Consensus 161 ~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 222 (228)
++|.+++ +| +..+++|+.|++++|.+++. . +..+++|++|++++|++++.++.
T Consensus 178 s~n~l~~---l~--l~~l~~L~~L~l~~N~l~~~---~-l~~l~~L~~L~Ls~N~l~~ip~~ 230 (457)
T 3bz5_A 178 SFNKITE---LD--VSQNKLLNRLNCDTNNITKL---D-LNQNIQLTFLDCSSNKLTEIDVT 230 (457)
T ss_dssp CSSCCCC---CC--CTTCTTCCEEECCSSCCSCC---C-CTTCTTCSEEECCSSCCSCCCCT
T ss_pred CCCccce---ec--cccCCCCCEEECcCCcCCee---c-cccCCCCCEEECcCCcccccCcc
Confidence 9999985 44 77889999999999999875 3 67899999999999999987743
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=2e-21 Score=162.33 Aligned_cols=217 Identities=16% Similarity=0.170 Sum_probs=147.9
Q ss_pred CCcCCcccccchhh----hcccccccccccCCCC-------hHHH-------HhccCCCCeeecCCccCCC----Ccchh
Q 041723 2 WHHGTRKKKIATAA----YGTASNAMKTLLQSPS-------LANL-------AEKLANLKVLHLGQVNTAS----TVPYA 59 (228)
Q Consensus 2 ~~~~~~~~~~~~~~----~~~l~~l~~l~l~~~~-------l~~~-------~~~l~~L~~L~l~~n~~~~----~~~~~ 59 (228)
.+++|++....... +..+++|++|++++|. +|.. +..+++|++|++++|.+.. .++..
T Consensus 38 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 117 (386)
T 2ca6_A 38 VLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF 117 (386)
T ss_dssp ECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHH
Confidence 35566666554433 5577888888888762 2433 3677888888888888876 36667
Q ss_pred ccCCcchHHHHHhhhhcCCCC-----Cc-cccCC---------CCCcEEEeeCCcCC-CCCC---Chhhccccccc----
Q 041723 60 SANLSSLFSLLSLIAYCKENF-----LP-SLGNL---------TKLNDLYLFGNDFS-GKVP---DSLGDLLQLNY---- 116 (228)
Q Consensus 60 ~~~l~~L~~L~~~l~~~~~~~-----~p-~~~~l---------~~L~~L~l~~n~l~-~~~p---~~~~~l~~~~~---- 116 (228)
+..+++|++|+ +++|.++. ++ .+..+ ++|++|++++|.++ +.++ ..+..++.+..
T Consensus 118 l~~~~~L~~L~--L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 195 (386)
T 2ca6_A 118 LSKHTPLEHLY--LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMV 195 (386)
T ss_dssp HHHCTTCCEEE--CCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECC
T ss_pred HHhCCCCCEEE--CcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECc
Confidence 77888888888 88888732 22 23333 78888888888876 2333 23334444322
Q ss_pred ---cc--c---ccchhhhcCCCCCEEeccCCccc----ccCccccccCCCCCEEEccCCccccC--CCcchhhhc--CCC
Q 041723 117 ---LT--G---EILVEIRKLTQLHILRLAENQLE----GSVPSSIFELRNLRALDLSDNNLSGT--GDLNMVLLN--LES 180 (228)
Q Consensus 117 ---l~--~---~~~~~~~~l~~L~~L~ls~n~l~----~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~p~~~~~--l~~ 180 (228)
+. + ..+..+..+++|+.|++++|.++ ..+|..+..+++|+.|++++|.+++. ..++..+.. +++
T Consensus 196 ~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~ 275 (386)
T 2ca6_A 196 QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG 275 (386)
T ss_dssp SSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCC
T ss_pred CCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCC
Confidence 22 1 22336778888899999988885 45677788888899999999888751 114566643 788
Q ss_pred CCEEEccCCcccc----ccCccccCCCCCcccccccccccccCc
Q 041723 181 LTALVLSSNKLSL----LAGTTVNTNLPNFTIIGSVHETLASSH 220 (228)
Q Consensus 181 L~~L~L~~n~l~~----~~~~~~~~~l~~L~~l~l~~n~~~~~~ 220 (228)
|++|++++|.+++ .++..+..++++|++|++++|++++..
T Consensus 276 L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 276 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred eEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 9999999998887 355541366888999999999888655
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=1.9e-20 Score=152.09 Aligned_cols=192 Identities=17% Similarity=0.121 Sum_probs=148.6
Q ss_pred cccccccCCCChHH-------HHhccCCCCeeecCCccCCCCcchhc--cCCcchHHHHHhhhhcCCCC-Cc-----ccc
Q 041723 21 NAMKTLLQSPSLAN-------LAEKLANLKVLHLGQVNTASTVPYAS--ANLSSLFSLLSLIAYCKENF-LP-----SLG 85 (228)
Q Consensus 21 ~l~~l~l~~~~l~~-------~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~~~l~~~~~~~-~p-----~~~ 85 (228)
.++.+.+..+.+++ .+..+.+|++|++++|.+.+..|..+ ..+++|++|+ +++|.+.. .+ .+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~--Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLR--LRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCE--EESCCCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEE--eecccccchhhhhHHHHhh
Confidence 56777777776432 23345779999999999999888888 8999999999 99999943 22 345
Q ss_pred CCCCCcEEEeeCCcCCCCCCChhhccccccccc-------cc--cc--hhhhcCCCCCEEeccCCcccccCcc----ccc
Q 041723 86 NLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT-------GE--IL--VEIRKLTQLHILRLAENQLEGSVPS----SIF 150 (228)
Q Consensus 86 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~-------~~--~~--~~~~~l~~L~~L~ls~n~l~~~~~~----~~~ 150 (228)
.+++|++|++++|.+.+..+..++.++.+..++ +. ++ ..++.+++|++|++++|.++ .++. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 789999999999999876777777777644432 21 21 22367889999999999997 3443 257
Q ss_pred cCCCCCEEEccCCccccCCCcchhhhcC---CCCCEEEccCCccccccCccccCCCCCcccccccccccccCcc
Q 041723 151 ELRNLRALDLSDNNLSGTGDLNMVLLNL---ESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHI 221 (228)
Q Consensus 151 ~l~~L~~L~l~~n~~~~~~~~p~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 221 (228)
.+++|++|++++|.+++ ..|+.+..+ ++|++|++++|+++.. |.. + .++|++|++++|++++.+.
T Consensus 222 ~l~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~-~--~~~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRA--TVNPSAPRCMWSSALNSLNLSFAGLEQV-PKG-L--PAKLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp HTCCCSSEECTTSCCCC--CCCSCCSSCCCCTTCCCEECCSSCCCSC-CSC-C--CSCCSCEECCSCCCCSCCC
T ss_pred cCCCCCEEECCCCCCCc--cchhhHHhccCcCcCCEEECCCCCCCch-hhh-h--cCCCCEEECCCCcCCCCch
Confidence 88999999999999997 557666665 6999999999999954 555 4 3799999999999998654
No 84
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=1.8e-19 Score=143.17 Aligned_cols=172 Identities=23% Similarity=0.256 Sum_probs=131.8
Q ss_pred ccccccccccCCCChHH--HHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEe
Q 041723 18 TASNAMKTLLQSPSLAN--LAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYL 95 (228)
Q Consensus 18 ~l~~l~~l~l~~~~l~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l 95 (228)
.+.++..++++++.+.+ .+..+++|++|++++|.+.. ++ .+..+++|++|+ +++|.+..++.+..+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~--L~~N~i~~~~~l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELH--LSHNQISDLSPLKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEE--CCSSCCCCCGGGTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEE--CCCCccCCChhhccCCCCCEEEC
Confidence 45567777888877432 57788889999998888875 33 678888888888 88888877777888888999999
Q ss_pred eCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhh
Q 041723 96 FGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVL 175 (228)
Q Consensus 96 ~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~ 175 (228)
++|.++ .+|.. .. ++|++|++++|.+++ ++ .+..+++|+.|++++|.+++ ++ .+
T Consensus 93 ~~N~l~-~l~~~------------------~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~---~~-~l 146 (263)
T 1xeu_A 93 NRNRLK-NLNGI------------------PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS---IV-ML 146 (263)
T ss_dssp CSSCCS-CCTTC------------------CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB---CG-GG
T ss_pred CCCccC-CcCcc------------------cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC---Ch-HH
Confidence 998887 34421 12 678888888888874 33 57888888888888888874 44 57
Q ss_pred hcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723 176 LNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF 222 (228)
Q Consensus 176 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 222 (228)
..+++|++|++++|++++. .. +..+++|+.|++++|+++..+..
T Consensus 147 ~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 147 GFLSKLEVLDLHGNEITNT--GG-LTRLKKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp GGCTTCCEEECTTSCCCBC--TT-STTCCCCCEEEEEEEEEECCCEE
T ss_pred ccCCCCCEEECCCCcCcch--HH-hccCCCCCEEeCCCCcccCCccc
Confidence 7888888888888888876 44 77888888888888888776544
No 85
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=7.3e-19 Score=136.84 Aligned_cols=147 Identities=24% Similarity=0.235 Sum_probs=95.7
Q ss_pred ccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEeeCC
Q 041723 24 KTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLFGN 98 (228)
Q Consensus 24 ~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~~n 98 (228)
.++.+++. +|..+. ++|++|++++|.+.+..+..+..+++|++|+ +++|.++.+| .+..+++|++|++++|
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~--L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELY--LGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEE--CCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEE--CCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 34444443 444332 6777777777777776677777777777777 7777776665 4566777777777777
Q ss_pred cCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcC
Q 041723 99 DFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNL 178 (228)
Q Consensus 99 ~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l 178 (228)
.++ .++.. .+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++ ..+..+..+
T Consensus 99 ~l~-~l~~~----------------~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l 158 (229)
T 3e6j_A 99 QLT-VLPSA----------------VFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS--IPHGAFDRL 158 (229)
T ss_dssp CCC-CCCTT----------------TTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCC--CCTTTTTTC
T ss_pred cCC-ccChh----------------HhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCc--cCHHHHhCC
Confidence 776 33322 2345667777777777776 566666777777777777777764 333456667
Q ss_pred CCCCEEEccCCccccc
Q 041723 179 ESLTALVLSSNKLSLL 194 (228)
Q Consensus 179 ~~L~~L~L~~n~l~~~ 194 (228)
++|+.+++++|++...
T Consensus 159 ~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 159 SSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTCCEEECTTSCBCTT
T ss_pred CCCCEEEeeCCCccCC
Confidence 7777777777776644
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=2.9e-20 Score=152.19 Aligned_cols=205 Identities=17% Similarity=0.172 Sum_probs=129.9
Q ss_pred cCCcccccchhhhcccccccccccCCCC-----hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhc-C
Q 041723 4 HGTRKKKIATAAYGTASNAMKTLLQSPS-----LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYC-K 77 (228)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~l~~l~l~~~~-----l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~-~ 77 (228)
.++.+....+. +..+++|+++++++|. ++..+..+++|++|++++|.+.+..+..+..+++|++|+ +++| .
T Consensus 78 ~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~--L~~~~~ 154 (336)
T 2ast_B 78 PRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN--LSGCSG 154 (336)
T ss_dssp TTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE--CTTCBS
T ss_pred CCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE--CCCCCC
Confidence 34444444333 4567888888888885 456777888888888888888777778888888888888 8888 5
Q ss_pred CC--CCc-cccCCCCCcEEEeeCC-cCCCC-CCChhhccc-ccccc---------c-cccchhhhcCCCCCEEeccCCc-
Q 041723 78 EN--FLP-SLGNLTKLNDLYLFGN-DFSGK-VPDSLGDLL-QLNYL---------T-GEILVEIRKLTQLHILRLAENQ- 140 (228)
Q Consensus 78 ~~--~~p-~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~-~~~~l---------~-~~~~~~~~~l~~L~~L~ls~n~- 140 (228)
++ .++ .+..+++|++|++++| .+++. ++..+..++ ++..+ + +.++..+..+++|+.|++++|.
T Consensus 155 l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234 (336)
T ss_dssp CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence 64 356 5777888888888888 77632 344444444 32222 1 3344555666777777777776
Q ss_pred ccccCccccccCCCCCEEEccCCc-cccCCCcchhhhcCCCCCEEEccCCccccccCccccCCC-CCccccccccccccc
Q 041723 141 LEGSVPSSIFELRNLRALDLSDNN-LSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL-PNFTIIGSVHETLAS 218 (228)
Q Consensus 141 l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~L~~l~l~~n~~~~ 218 (228)
+++..+..+..+++|+.|++++|. +++ .....+..+++|++|++++| +.... +..+ ..+..|++++|++++
T Consensus 235 l~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~-i~~~~----~~~l~~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 235 LKNDCFQEFFQLNYLQHLSLSRCYDIIP--ETLLELGEIPTLKTLQVFGI-VPDGT----LQLLKEALPHLQINCSHFTT 307 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTCTTCCG--GGGGGGGGCTTCCEEECTTS-SCTTC----HHHHHHHSTTSEESCCCSCC
T ss_pred CCHHHHHHHhCCCCCCEeeCCCCCCCCH--HHHHHHhcCCCCCEEeccCc-cCHHH----HHHHHhhCcceEEecccCcc
Confidence 554555566667777777777764 222 11224566677777777766 33221 1222 224455566666664
No 87
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=4.2e-19 Score=137.42 Aligned_cols=147 Identities=16% Similarity=0.174 Sum_probs=87.0
Q ss_pred CeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc---cccCCCCCcEEEeeCCcCCCCCCChhhcccccccccc
Q 041723 43 KVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP---SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTG 119 (228)
Q Consensus 43 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p---~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~ 119 (228)
+.+++++|.++. +|..+. ..+++|+ +++|.+..++ .+..+++|+.|++++|.+++..+
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~--L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~-------------- 74 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELR--LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE-------------- 74 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEE--CCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT--------------
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEE--cCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH--------------
Confidence 456666666554 333322 2345556 6666664442 35666666777776666652222
Q ss_pred ccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccc
Q 041723 120 EILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTV 199 (228)
Q Consensus 120 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~ 199 (228)
..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++ ..|..+..+++|++|++++|.+++..|..
T Consensus 75 ---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~- 148 (220)
T 2v70_A 75 ---GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC--VGNDSFIGLSSVRLLSLYDNQITTVAPGA- 148 (220)
T ss_dssp ---TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCC--BCTTSSTTCTTCSEEECTTSCCCCBCTTT-
T ss_pred ---HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCe--ECHhHcCCCccCCEEECCCCcCCEECHHH-
Confidence 124455666667777776665445556666677777777776664 44556666666777777777766665665
Q ss_pred cCCCCCccccccccc
Q 041723 200 NTNLPNFTIIGSVHE 214 (228)
Q Consensus 200 ~~~l~~L~~l~l~~n 214 (228)
+..+++|+++++++|
T Consensus 149 ~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 149 FDTLHSLSTLNLLAN 163 (220)
T ss_dssp TTTCTTCCEEECCSC
T ss_pred hcCCCCCCEEEecCc
Confidence 666666666664433
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=8.8e-19 Score=141.16 Aligned_cols=163 Identities=25% Similarity=0.275 Sum_probs=139.5
Q ss_pred CCcCCcccccchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE 78 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~ 78 (228)
+++++.++.+. .++.+++|++|++++|. +++ +..+++|++|++++|.+.+ .+.+..+++|++|+ +++|.+
T Consensus 52 ~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~--L~~n~i 124 (291)
T 1h6t_A 52 IANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLS--LEHNGI 124 (291)
T ss_dssp ECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--GGGGTTCTTCCEEE--CTTSCC
T ss_pred EccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC--ChhhccCCCCCEEE--CCCCcC
Confidence 45677777774 48889999999999998 444 8899999999999999976 33489999999999 999999
Q ss_pred CCCccccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEE
Q 041723 79 NFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRAL 158 (228)
Q Consensus 79 ~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 158 (228)
..++.+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|.+.+. +. +..+++|+.|
T Consensus 125 ~~~~~l~~l~~L~~L~l~~n~l~~-~~------------------~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L 183 (291)
T 1h6t_A 125 SDINGLVHLPQLESLYLGNNKITD-IT------------------VLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNL 183 (291)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCC-CG------------------GGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEE
T ss_pred CCChhhcCCCCCCEEEccCCcCCc-ch------------------hhccCCCCCEEEccCCccccc-hh-hcCCCccCEE
Confidence 888888899999999999999983 22 356789999999999999854 43 8899999999
Q ss_pred EccCCccccCCCcchhhhcCCCCCEEEccCCccccccC
Q 041723 159 DLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAG 196 (228)
Q Consensus 159 ~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~ 196 (228)
++++|.+++ ++. +..+++|+.|++++|+++....
T Consensus 184 ~L~~N~i~~---l~~-l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 184 YLSKNHISD---LRA-LAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp ECCSSCCCB---CGG-GTTCTTCSEEEEEEEEEECCCE
T ss_pred ECCCCcCCC---Chh-hccCCCCCEEECcCCcccCCcc
Confidence 999999984 554 8899999999999999986543
No 89
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=4.9e-19 Score=135.60 Aligned_cols=150 Identities=27% Similarity=0.264 Sum_probs=86.2
Q ss_pred CCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhcccccccc
Q 041723 40 ANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYL 117 (228)
Q Consensus 40 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l 117 (228)
+++++|++++|.+.+..+..+..+++|++|+ +++|.+..+| .+..+++|++|++++|.++ .++..
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~--l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~---------- 94 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLY--LGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNG---------- 94 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEE--CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTT----------
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEE--CCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHh----------
Confidence 3566666666666655555566666666666 6666665555 3556666666666666665 23321
Q ss_pred ccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCc
Q 041723 118 TGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGT 197 (228)
Q Consensus 118 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 197 (228)
.+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++ ..+..+..+++|+++++++|++.+
T Consensus 95 ------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 95 ------VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS--VPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp ------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred ------HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce--eCHHHhccCCCccEEEecCCCeec----
Confidence 13455566666666666664333445666666666666666663 233335556666666666664432
Q ss_pred cccCCCCCccccccccccccc
Q 041723 198 TVNTNLPNFTIIGSVHETLAS 218 (228)
Q Consensus 198 ~~~~~l~~L~~l~l~~n~~~~ 218 (228)
.++.++.++++.|++++
T Consensus 163 ----~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTT
T ss_pred ----CCCCHHHHHHHHHhCCc
Confidence 24445555555555553
No 90
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=1.9e-18 Score=132.36 Aligned_cols=158 Identities=27% Similarity=0.259 Sum_probs=131.6
Q ss_pred cccccccccCCCCh---H-HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcE
Q 041723 19 ASNAMKTLLQSPSL---A-NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLND 92 (228)
Q Consensus 19 l~~l~~l~l~~~~l---~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~ 92 (228)
.++++++++++|.+ + +.+..+++|++|++++|.+++..+..+..+++|++|+ +++|.+..+| .+..+++|++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--Ls~n~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN--LSTNQLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE--CCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE--CCCCcCCccCHhHhcCccCCCE
Confidence 35899999999973 3 4578899999999999999887777789999999999 9999997777 5789999999
Q ss_pred EEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcc
Q 041723 93 LYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLN 172 (228)
Q Consensus 93 L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p 172 (228)
|++++|.++ .++.. .+..+++|+.|++++|.+++..+..+..+++|+.+++++|.+..
T Consensus 105 L~L~~N~l~-~~~~~----------------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----- 162 (208)
T 2o6s_A 105 LALNTNQLQ-SLPDG----------------VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----- 162 (208)
T ss_dssp EECCSSCCC-CCCTT----------------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred EEcCCCcCc-ccCHh----------------HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----
Confidence 999999998 34422 24678899999999999986555568899999999999998764
Q ss_pred hhhhcCCCCCEEEccCCccccccCccccCCCCC
Q 041723 173 MVLLNLESLTALVLSSNKLSLLAGTTVNTNLPN 205 (228)
Q Consensus 173 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 205 (228)
.++.++.++++.|.+++.+|.. ++.++.
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~-~~~l~~ 190 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNS-AGSVAP 190 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCT-TSSBCT
T ss_pred ----CCCCHHHHHHHHHhCCceeecc-CccccC
Confidence 2456888999999999998887 776654
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=3.4e-18 Score=150.45 Aligned_cols=171 Identities=26% Similarity=0.307 Sum_probs=144.3
Q ss_pred CCCcCCcccccchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC
Q 041723 1 MWHHGTRKKKIATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK 77 (228)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~ 77 (228)
+.++++.+..++ .++.+++|+.|++++|. +++ +..+++|+.|++++|.+.+ ++.+..+++|+.|+ +++|.
T Consensus 48 L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~--Ls~N~ 120 (605)
T 1m9s_A 48 IIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD--LSSLKDLKKLKSLS--LEHNG 120 (605)
T ss_dssp CBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC--CTTSTTCTTCCEEE--CTTSC
T ss_pred EECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC--ChhhccCCCCCEEE--ecCCC
Confidence 346677777775 58899999999999998 444 8899999999999999976 33789999999999 99999
Q ss_pred CCCCccccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCE
Q 041723 78 ENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRA 157 (228)
Q Consensus 78 ~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 157 (228)
+..++.+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|.+.+..| +..+++|+.
T Consensus 121 l~~l~~l~~l~~L~~L~Ls~N~l~~-l~------------------~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 179 (605)
T 1m9s_A 121 ISDINGLVHLPQLESLYLGNNKITD-IT------------------VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 179 (605)
T ss_dssp CCCCGGGGGCTTCSEEECCSSCCCC-CG------------------GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred CCCCccccCCCccCEEECCCCccCC-ch------------------hhcccCCCCEEECcCCcCCCchh--hccCCCCCE
Confidence 9888889999999999999999983 21 35688999999999999996544 899999999
Q ss_pred EEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCC
Q 041723 158 LDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLP 204 (228)
Q Consensus 158 L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 204 (228)
|++++|.+++ ++ .+..+++|+.|+|++|++.+.+... ...+.
T Consensus 180 L~Ls~N~i~~---l~-~l~~l~~L~~L~L~~N~l~~~p~~~-~~~l~ 221 (605)
T 1m9s_A 180 LYLSKNHISD---LR-ALAGLKNLDVLELFSQECLNKPINH-QSNLV 221 (605)
T ss_dssp EECCSSCCCB---CG-GGTTCTTCSEEECCSEEEECCCCCC-CSSCE
T ss_pred EECcCCCCCC---Ch-HHccCCCCCEEEccCCcCcCCcccc-cccEE
Confidence 9999999985 44 5889999999999999998765544 44443
No 92
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=2.8e-18 Score=133.51 Aligned_cols=147 Identities=26% Similarity=0.264 Sum_probs=96.4
Q ss_pred CCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCC-c-cccCCCCCcEEEeeCCcCCCCCCChhhcccccccccc
Q 041723 42 LKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFL-P-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTG 119 (228)
Q Consensus 42 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~-p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~ 119 (228)
-+.++.+++.+.. +|..+ .++|++|+ +++|.+..+ | .+..+++|+.|++++|.++ .+|..
T Consensus 21 ~~~v~c~~~~l~~-ip~~~--~~~L~~L~--Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~------------ 82 (229)
T 3e6j_A 21 GTTVDCRSKRHAS-VPAGI--PTNAQILY--LHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVG------------ 82 (229)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEE--CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTT------------
T ss_pred CCEeEccCCCcCc-cCCCC--CCCCCEEE--cCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChh------------
Confidence 3456666666654 34333 26677777 777777544 3 6677777777777777775 34422
Q ss_pred ccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccc
Q 041723 120 EILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTV 199 (228)
Q Consensus 120 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~ 199 (228)
.+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++..+..
T Consensus 83 ----~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~---~lp~~~~~l~~L~~L~L~~N~l~~~~~~~- 154 (229)
T 3e6j_A 83 ----VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT---ELPRGIERLTHLTHLALDQNQLKSIPHGA- 154 (229)
T ss_dssp ----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---SCCTTGGGCTTCSEEECCSSCCCCCCTTT-
T ss_pred ----hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc---ccCcccccCCCCCEEECCCCcCCccCHHH-
Confidence 2345667777777777777544445667777777777777776 56666777777777777777777665555
Q ss_pred cCCCCCccccccccc
Q 041723 200 NTNLPNFTIIGSVHE 214 (228)
Q Consensus 200 ~~~l~~L~~l~l~~n 214 (228)
+..+++|+.+++++|
T Consensus 155 ~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGN 169 (229)
T ss_dssp TTTCTTCCEEECTTS
T ss_pred HhCCCCCCEEEeeCC
Confidence 677777777774444
No 93
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=7.7e-19 Score=154.59 Aligned_cols=138 Identities=25% Similarity=0.261 Sum_probs=79.7
Q ss_pred CCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhccccccccc
Q 041723 41 NLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT 118 (228)
Q Consensus 41 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~ 118 (228)
.+++||+++|.+++..+.+|..+++|++|+ +++|.+..+| .|.++++|++|++++|+++ .+|.
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~--Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~------------ 117 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLD--LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLAL------------ 117 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEE--CTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECG------------
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEE--CCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCH------------
Confidence 566666666666655555666666666666 6666665554 4566666666666666665 2231
Q ss_pred cccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCcc
Q 041723 119 GEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTT 198 (228)
Q Consensus 119 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 198 (228)
..++++++|++|++++|.+++..+..|+.+++|+.|++++|.++.. ..|..+..+++|++|++++|++++..+..
T Consensus 118 ----~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 118 ----GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp ----GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred ----HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccC-CCchhhccchhhhhhcccCcccccccccc
Confidence 1244555666666666666543334456666666666666665531 34455555666666666666665554444
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=2.6e-19 Score=148.38 Aligned_cols=210 Identities=16% Similarity=0.108 Sum_probs=98.2
Q ss_pred cCCcccccchhhhcccccccccccCCCChH--------HHHhccC-CCCeeecCCccCCCCcchhccCC-----cchHHH
Q 041723 4 HGTRKKKIATAAYGTASNAMKTLLQSPSLA--------NLAEKLA-NLKVLHLGQVNTASTVPYASANL-----SSLFSL 69 (228)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~--------~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L 69 (228)
+.+.+....+..+....++++|++++|.+. +.+..++ +|++|++++|.+.+..+..+..+ ++|++|
T Consensus 6 s~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 85 (362)
T 3goz_A 6 TLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSL 85 (362)
T ss_dssp CCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred ccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEE
Confidence 344555555555555555666666666521 3445555 56666666666655545444443 556666
Q ss_pred HHhhhhcCCCCCc--c----ccCC-CCCcEEEeeCCcCCCCCCChhhcc-----cc-------cccccc----ccchhhh
Q 041723 70 LSLIAYCKENFLP--S----LGNL-TKLNDLYLFGNDFSGKVPDSLGDL-----LQ-------LNYLTG----EILVEIR 126 (228)
Q Consensus 70 ~~~l~~~~~~~~p--~----~~~l-~~L~~L~l~~n~l~~~~p~~~~~l-----~~-------~~~l~~----~~~~~~~ 126 (228)
+ +++|.++..+ . +..+ ++|++|++++|.+++..+..++.. +. .+.+.+ .++..+.
T Consensus 86 ~--Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 163 (362)
T 3goz_A 86 N--LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA 163 (362)
T ss_dssp E--CCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred E--CcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence 6 6666663222 2 2233 556666666666553332222211 11 122221 2223333
Q ss_pred cCC-CCCEEeccCCcccccCcccc----ccC-CCCCEEEccCCccccCC--CcchhhhcC-CCCCEEEccCCccccccCc
Q 041723 127 KLT-QLHILRLAENQLEGSVPSSI----FEL-RNLRALDLSDNNLSGTG--DLNMVLLNL-ESLTALVLSSNKLSLLAGT 197 (228)
Q Consensus 127 ~l~-~L~~L~ls~n~l~~~~~~~~----~~l-~~L~~L~l~~n~~~~~~--~~p~~~~~l-~~L~~L~L~~n~l~~~~~~ 197 (228)
.++ +|++|++++|.+.+..+..+ ..+ ++|+.|++++|.+++.. .++..+... ++|++|++++|.+++..+.
T Consensus 164 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 243 (362)
T 3goz_A 164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH
T ss_pred cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH
Confidence 333 56666666666554433222 223 35666666666555310 133334332 3555555555555543221
Q ss_pred ---cccCCCCCcccccccccc
Q 041723 198 ---TVNTNLPNFTIIGSVHET 215 (228)
Q Consensus 198 ---~~~~~l~~L~~l~l~~n~ 215 (228)
..+..+++|++|++++|.
T Consensus 244 ~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 244 NLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHhcCCCccEEEeccCC
Confidence 012334444444444444
No 95
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.8e-18 Score=133.88 Aligned_cols=147 Identities=22% Similarity=0.268 Sum_probs=108.0
Q ss_pred ccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCC-c-cccCCCCCcEEEeeCC
Q 041723 24 KTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFL-P-SLGNLTKLNDLYLFGN 98 (228)
Q Consensus 24 ~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~-p-~~~~l~~L~~L~l~~n 98 (228)
.+++.++. +|..+. +.+++|++++|.+.+..+..|..+++|++|+ +++|.+..+ | .+.++++|++|++++|
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~--Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRID--LSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEE--CCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEE--CCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 44555544 444433 5788888888888776666788888888888 888888555 4 7788888888888888
Q ss_pred cCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcC
Q 041723 99 DFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNL 178 (228)
Q Consensus 99 ~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l 178 (228)
.++ .+|.. .+..+++|+.|++++|.+.+..|..|..+++|+.|++++|.+++ ..+..+..+
T Consensus 91 ~l~-~l~~~----------------~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l 151 (220)
T 2v9t_B 91 KIT-ELPKS----------------LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT--IAKGTFSPL 151 (220)
T ss_dssp CCC-CCCTT----------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CCTTTTTTC
T ss_pred cCC-ccCHh----------------HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE--ECHHHHhCC
Confidence 887 44533 24567788888888888886667778888888888888888875 444567778
Q ss_pred CCCCEEEccCCcccc
Q 041723 179 ESLTALVLSSNKLSL 193 (228)
Q Consensus 179 ~~L~~L~L~~n~l~~ 193 (228)
++|+++++++|++..
T Consensus 152 ~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 152 RAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred CCCCEEEeCCCCcCC
Confidence 888888888887753
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.1e-18 Score=138.60 Aligned_cols=161 Identities=21% Similarity=0.220 Sum_probs=136.5
Q ss_pred CcCCcccccchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCC
Q 041723 3 HHGTRKKKIATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKEN 79 (228)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~ 79 (228)
++++.+..+. .+..+++++++++++|. ++ .+..+++|++|++++|.+.+..+ +..+++|++|+ +++|.+.
T Consensus 26 l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~--L~~N~l~ 98 (263)
T 1xeu_A 26 LGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS--VNRNRLK 98 (263)
T ss_dssp HTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE--CCSSCCS
T ss_pred hcCCCccccc--chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE--CCCCccC
Confidence 3456666665 57888999999999997 44 78899999999999999987655 89999999999 9999998
Q ss_pred CCccccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEE
Q 041723 80 FLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALD 159 (228)
Q Consensus 80 ~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 159 (228)
.+|.+.. ++|++|++++|.+++ ++ .+..+++|+.|++++|.+++ ++ .+..+++|+.|+
T Consensus 99 ~l~~~~~-~~L~~L~L~~N~l~~-~~------------------~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~ 156 (263)
T 1xeu_A 99 NLNGIPS-ACLSRLFLDNNELRD-TD------------------SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLD 156 (263)
T ss_dssp CCTTCCC-SSCCEEECCSSCCSB-SG------------------GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEE
T ss_pred CcCcccc-CcccEEEccCCccCC-Ch------------------hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEE
Confidence 8885555 999999999999983 22 35678999999999999985 44 688999999999
Q ss_pred ccCCccccCCCcchhhhcCCCCCEEEccCCccccccC
Q 041723 160 LSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAG 196 (228)
Q Consensus 160 l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~ 196 (228)
+++|.+++ + ..+..+++|+.|++++|+++..+.
T Consensus 157 L~~N~i~~---~-~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 157 LHGNEITN---T-GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp CTTSCCCB---C-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred CCCCcCcc---h-HHhccCCCCCEEeCCCCcccCCcc
Confidence 99999986 3 668889999999999999987643
No 97
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=2e-19 Score=157.24 Aligned_cols=175 Identities=20% Similarity=0.219 Sum_probs=135.5
Q ss_pred cccccccccccCCCC---hHHHHhccCCCCeeecCCcc-------------CCCCcchhccCCcchHHHHH---------
Q 041723 17 GTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVN-------------TASTVPYASANLSSLFSLLS--------- 71 (228)
Q Consensus 17 ~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~~~~l~~L~~L~~--------- 71 (228)
...++++.|++++|. +|+.++++++|++|++++|. ..+..|..++.+++|+.|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 456788899999987 78999999999999997764 45566777777777776640
Q ss_pred ---hhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccc
Q 041723 72 ---LIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSS 148 (228)
Q Consensus 72 ---~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 148 (228)
.+.+|.+..+|. ..|+.|++++|.++ .+|. ++.+++|+.|++++|.++ .+|..
T Consensus 426 ~~l~l~~n~i~~l~~----~~L~~L~Ls~n~l~-~lp~------------------~~~l~~L~~L~Ls~N~l~-~lp~~ 481 (567)
T 1dce_A 426 RSKFLLENSVLKMEY----ADVRVLHLAHKDLT-VLCH------------------LEQLLLVTHLDLSHNRLR-ALPPA 481 (567)
T ss_dssp HHHHHHHHHHHHHHH----TTCSEEECTTSCCS-SCCC------------------GGGGTTCCEEECCSSCCC-CCCGG
T ss_pred hhhhhhcccccccCc----cCceEEEecCCCCC-CCcC------------------ccccccCcEeecCccccc-ccchh
Confidence 033334333331 24889999999998 3553 456778889999999888 77888
Q ss_pred cccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCcccccc-CccccCCCCCcccccccccccccCc
Q 041723 149 IFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLA-GTTVNTNLPNFTIIGSVHETLASSH 220 (228)
Q Consensus 149 ~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~l~l~~n~~~~~~ 220 (228)
++.+++|+.|++++|.++ .+| .+..+++|+.|+|++|.+++.. |.. +..+++|++|++++|.+++.+
T Consensus 482 ~~~l~~L~~L~Ls~N~l~---~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 482 LAALRCLEVLQASDNALE---NVD-GVANLPRLQELLLCNNRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp GGGCTTCCEEECCSSCCC---CCG-GGTTCSSCCEEECCSSCCCSSSTTGG-GGGCTTCCEEECTTSGGGGSS
T ss_pred hhcCCCCCEEECCCCCCC---CCc-ccCCCCCCcEEECCCCCCCCCCCcHH-HhcCCCCCEEEecCCcCCCCc
Confidence 888899999999999888 456 6888888999999999988876 777 888889999999988888754
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=1.2e-19 Score=148.45 Aligned_cols=202 Identities=17% Similarity=0.156 Sum_probs=134.8
Q ss_pred hhhhccc--ccccccccCCCCh---HHHHhccCCCCeeecCCccCCCC-cchhccCCcchHHHHHhhhhcCCC-CCc-cc
Q 041723 13 TAAYGTA--SNAMKTLLQSPSL---ANLAEKLANLKVLHLGQVNTAST-VPYASANLSSLFSLLSLIAYCKEN-FLP-SL 84 (228)
Q Consensus 13 ~~~~~~l--~~l~~l~l~~~~l---~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~~~l~~~~~~-~~p-~~ 84 (228)
+..++.+ .+++.+++.++.+ +..+..+++|++|++++|.+.+. .+..+..+++|++|+ +++|.+. ..+ .+
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~--L~~~~l~~~~~~~l 138 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS--LEGLRLSDPIVNTL 138 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE--CTTCBCCHHHHHHH
T ss_pred HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe--CcCcccCHHHHHHH
Confidence 4455555 6778888887763 33455678888888888887655 677788888888888 8888873 455 77
Q ss_pred cCCCCCcEEEeeCC-cCCC-CCCChhhcccccccc--------ccc-cchhhhcCC-CCCEEeccCCc--cc-ccCcccc
Q 041723 85 GNLTKLNDLYLFGN-DFSG-KVPDSLGDLLQLNYL--------TGE-ILVEIRKLT-QLHILRLAENQ--LE-GSVPSSI 149 (228)
Q Consensus 85 ~~l~~L~~L~l~~n-~l~~-~~p~~~~~l~~~~~l--------~~~-~~~~~~~l~-~L~~L~ls~n~--l~-~~~~~~~ 149 (228)
+.+++|++|++++| .+++ .++..+..++++..+ ++. ++..++.++ +|++|++++|. ++ +.++..+
T Consensus 139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~ 218 (336)
T 2ast_B 139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218 (336)
T ss_dssp TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH
Confidence 77888888888888 5653 244445555543322 221 455566777 78888888773 33 2345556
Q ss_pred ccCCCCCEEEccCCc-cccCCCcchhhhcCCCCCEEEccCCc-cccccCccccCCCCCcccccccccccccCc
Q 041723 150 FELRNLRALDLSDNN-LSGTGDLNMVLLNLESLTALVLSSNK-LSLLAGTTVNTNLPNFTIIGSVHETLASSH 220 (228)
Q Consensus 150 ~~l~~L~~L~l~~n~-~~~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 220 (228)
..+++|+.|++++|. +++ ..+..+..+++|++|++++|. +....... +.++++|++|++++| +++..
T Consensus 219 ~~~~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~-i~~~~ 287 (336)
T 2ast_B 219 RRCPNLVHLDLSDSVMLKN--DCFQEFFQLNYLQHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI-VPDGT 287 (336)
T ss_dssp HHCTTCSEEECTTCTTCCG--GGGGGGGGCTTCCEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS-SCTTC
T ss_pred hhCCCCCEEeCCCCCcCCH--HHHHHHhCCCCCCEeeCCCCCCCCHHHHHH-HhcCCCCCEEeccCc-cCHHH
Confidence 677788888888877 554 556667777788888887774 33222224 566778888887777 55443
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=7.5e-20 Score=152.81 Aligned_cols=202 Identities=18% Similarity=0.209 Sum_probs=153.1
Q ss_pred hhhcccccccccccCCCCh--------HHHHhccCCCCeeecCCccC---CCCcchhc-------cCCcchHHHHHhhhh
Q 041723 14 AAYGTASNAMKTLLQSPSL--------ANLAEKLANLKVLHLGQVNT---ASTVPYAS-------ANLSSLFSLLSLIAY 75 (228)
Q Consensus 14 ~~~~~l~~l~~l~l~~~~l--------~~~~~~l~~L~~L~l~~n~~---~~~~~~~~-------~~l~~L~~L~~~l~~ 75 (228)
..+..++++++|++++|.+ +..+..+++|++|++++|.+ .+.+|..+ ..+++|++|+ +++
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~--Ls~ 103 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR--LSD 103 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE--CCS
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE--CCC
Confidence 4567778999999999973 23466899999999999744 34455554 6889999999 999
Q ss_pred cCCCC-----Cc-cccCCCCCcEEEeeCCcCCCCCCChhhc----c---------ccc-------cccc-cccc---hhh
Q 041723 76 CKENF-----LP-SLGNLTKLNDLYLFGNDFSGKVPDSLGD----L---------LQL-------NYLT-GEIL---VEI 125 (228)
Q Consensus 76 ~~~~~-----~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~----l---------~~~-------~~l~-~~~~---~~~ 125 (228)
|.++. +| .+..+++|++|++++|.+++..+..++. + +.+ +.+. +.++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 99954 66 7888999999999999986333333322 2 342 3333 2333 466
Q ss_pred hcCCCCCEEeccCCcccc-----cCccccccCCCCCEEEccCCccccC--CCcchhhhcCCCCCEEEccCCccccc----
Q 041723 126 RKLTQLHILRLAENQLEG-----SVPSSIFELRNLRALDLSDNNLSGT--GDLNMVLLNLESLTALVLSSNKLSLL---- 194 (228)
Q Consensus 126 ~~l~~L~~L~ls~n~l~~-----~~~~~~~~l~~L~~L~l~~n~~~~~--~~~p~~~~~l~~L~~L~L~~n~l~~~---- 194 (228)
..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+++. ..+|..+..+++|++|+|++|.+++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 788999999999999873 2343778999999999999998510 16788889999999999999999875
Q ss_pred cCcccc--CCCCCccccccccccccc
Q 041723 195 AGTTVN--TNLPNFTIIGSVHETLAS 218 (228)
Q Consensus 195 ~~~~~~--~~l~~L~~l~l~~n~~~~ 218 (228)
++.. + ..+++|++|++++|.+++
T Consensus 264 l~~~-l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 264 VVDA-FSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHH-HHTCSSCCCCEEECCSSCCBH
T ss_pred HHHH-HhhccCCCeEEEECcCCcCCH
Confidence 3333 4 348999999999999987
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.75 E-value=2.1e-19 Score=148.95 Aligned_cols=213 Identities=17% Similarity=0.171 Sum_probs=156.7
Q ss_pred CCcCCcccccch----hhhcccc-cccccccCCCCh----HHHHhcc-----CCCCeeecCCccCCCCcchhccC----C
Q 041723 2 WHHGTRKKKIAT----AAYGTAS-NAMKTLLQSPSL----ANLAEKL-----ANLKVLHLGQVNTASTVPYASAN----L 63 (228)
Q Consensus 2 ~~~~~~~~~~~~----~~~~~l~-~l~~l~l~~~~l----~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~----l 63 (228)
.+++|++..... ..+..++ +|++|++++|.+ +..+..+ ++|++|++++|.+++..+..+.. +
T Consensus 28 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 107 (362)
T 3goz_A 28 DLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAI 107 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred EccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhC
Confidence 567888888887 7788888 899999999985 3445554 89999999999998776664444 4
Q ss_pred -cchHHHHHhhhhcCCCCCc--c----ccC-CCCCcEEEeeCCcCCCCCCChh----hccc-c-------ccccccccch
Q 041723 64 -SSLFSLLSLIAYCKENFLP--S----LGN-LTKLNDLYLFGNDFSGKVPDSL----GDLL-Q-------LNYLTGEILV 123 (228)
Q Consensus 64 -~~L~~L~~~l~~~~~~~~p--~----~~~-l~~L~~L~l~~n~l~~~~p~~~----~~l~-~-------~~~l~~~~~~ 123 (228)
++|++|+ +++|.++..+ . +.. ..+|++|++++|.+++..+..+ ..++ . .+.+.+..+.
T Consensus 108 ~~~L~~L~--Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 185 (362)
T 3goz_A 108 PFTITVLD--LGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCA 185 (362)
T ss_dssp CTTCCEEE--CCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH
T ss_pred CCCccEEE--CcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHH
Confidence 8999999 9999995554 3 333 3689999999999885333332 2222 2 3444444443
Q ss_pred ----hhhcC-CCCCEEeccCCccccc----Ccccccc-CCCCCEEEccCCccccCCCcc----hhhhcCCCCCEEEccCC
Q 041723 124 ----EIRKL-TQLHILRLAENQLEGS----VPSSIFE-LRNLRALDLSDNNLSGTGDLN----MVLLNLESLTALVLSSN 189 (228)
Q Consensus 124 ----~~~~l-~~L~~L~ls~n~l~~~----~~~~~~~-l~~L~~L~l~~n~~~~~~~~p----~~~~~l~~L~~L~L~~n 189 (228)
.+..+ ++|++|++++|.+.+. ++..+.. .++|+.|++++|.+++ ..+ ..+..+++|++|++++|
T Consensus 186 ~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~--~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 186 ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG--PSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC--CCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc--HHHHHHHHHHhcCCCccEEEeccC
Confidence 34455 5999999999999853 3445555 4599999999999986 333 34567789999999999
Q ss_pred cccccc-------CccccCCCCCcccccccccccccC
Q 041723 190 KLSLLA-------GTTVNTNLPNFTIIGSVHETLASS 219 (228)
Q Consensus 190 ~l~~~~-------~~~~~~~l~~L~~l~l~~n~~~~~ 219 (228)
.+.+.. +.. +.++++|+++++++|.+.+.
T Consensus 264 ~l~~i~~~~~~~l~~~-~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 264 IVKNMSKEQCKALGAA-FPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHTTCCHHHHHHHHTT-STTCCEEEEECTTSCBCCGG
T ss_pred CccccCHHHHHHHHHH-hccCCceEEEecCCCcCCCc
Confidence 955432 234 67889999999999999876
No 101
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.74 E-value=3e-18 Score=146.24 Aligned_cols=196 Identities=19% Similarity=0.198 Sum_probs=102.4
Q ss_pred CcCCcccccchhhhcccccccccccCCCChHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc
Q 041723 3 HHGTRKKKIATAAYGTASNAMKTLLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP 82 (228)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p 82 (228)
+++|++..++ .++.+++|+++++++|.+...-....+|++|++++|.+. .+| .+..+++|++|+ +++|.+..+|
T Consensus 180 L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~--l~~N~l~~l~ 253 (454)
T 1jl5_A 180 AGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIY--ADNNLLKTLP 253 (454)
T ss_dssp CCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEE--CCSSCCSSCC
T ss_pred CcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEE--CCCCcCCccc
Confidence 3445555543 355666666666666653221111235666666666655 344 366666666666 6666665555
Q ss_pred cccCCCCCcEEEeeCCcCCCCCCChhhcccc----cccccc--ccchhh-------------hcC-CCCCEEeccCCccc
Q 041723 83 SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ----LNYLTG--EILVEI-------------RKL-TQLHILRLAENQLE 142 (228)
Q Consensus 83 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~----~~~l~~--~~~~~~-------------~~l-~~L~~L~ls~n~l~ 142 (228)
.. +++|+.|++++|.++ .+|..+..+.. .+.+.+ ..|..+ ..+ ++|+.|++++|.+.
T Consensus 254 ~~--~~~L~~L~l~~N~l~-~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~ 330 (454)
T 1jl5_A 254 DL--PPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI 330 (454)
T ss_dssp SC--CTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS
T ss_pred cc--ccccCEEECCCCccc-ccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccc
Confidence 21 255666666666665 24433322222 122222 122111 122 46777777777776
Q ss_pred ccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCcccc--ccCccccCCC-------------CCcc
Q 041723 143 GSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSL--LAGTTVNTNL-------------PNFT 207 (228)
Q Consensus 143 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l-------------~~L~ 207 (228)
+ +|.. +++|+.|++++|.++ .+|. .+++|++|++++|++++ ..|.. +..+ ++|+
T Consensus 331 ~-lp~~---~~~L~~L~L~~N~l~---~lp~---~l~~L~~L~L~~N~l~~l~~ip~~-l~~L~~n~~~~~i~~~~~~L~ 399 (454)
T 1jl5_A 331 E-LPAL---PPRLERLIASFNHLA---EVPE---LPQNLKQLHVEYNPLREFPDIPES-VEDLRMNSHLAEVPELPQNLK 399 (454)
T ss_dssp C-CCCC---CTTCCEEECCSSCCS---CCCC---CCTTCCEEECCSSCCSSCCCCCTT-CCEEECCC-------------
T ss_pred c-cccc---CCcCCEEECCCCccc---cccc---hhhhccEEECCCCCCCcCCCChHH-HHhhhhcccccccccccCcCC
Confidence 3 5543 577888888888887 4555 36788999999999888 55665 6555 7888
Q ss_pred ccccccccccc
Q 041723 208 IIGSVHETLAS 218 (228)
Q Consensus 208 ~l~l~~n~~~~ 218 (228)
+|++++|.+++
T Consensus 400 ~L~ls~N~l~~ 410 (454)
T 1jl5_A 400 QLHVETNPLRE 410 (454)
T ss_dssp -----------
T ss_pred EEECCCCcCCc
Confidence 99999888875
No 102
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=2e-18 Score=152.21 Aligned_cols=81 Identities=23% Similarity=0.276 Sum_probs=64.3
Q ss_pred CCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccc
Q 041723 129 TQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTI 208 (228)
Q Consensus 129 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 208 (228)
++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++. +|.. +.++++|+.
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~---~lp~---~~~~L~~L~Ls~N~L~~-lp~~-l~~l~~L~~ 288 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT---SLPM---LPSGLLSLSVYRNQLTR-LPES-LIHLSSETT 288 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS---CCCC---CCTTCCEEECCSSCCCS-CCGG-GGGSCTTCE
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC---cCCc---ccccCcEEeCCCCCCCc-CCHH-HhhccccCE
Confidence 678888888888873 55 45678888899888887 4555 56789999999999984 4666 888999999
Q ss_pred ccccccccccCcc
Q 041723 209 IGSVHETLASSHI 221 (228)
Q Consensus 209 l~l~~n~~~~~~~ 221 (228)
|++++|.+++...
T Consensus 289 L~L~~N~l~~~~~ 301 (622)
T 3g06_A 289 VNLEGNPLSERTL 301 (622)
T ss_dssp EECCSCCCCHHHH
T ss_pred EEecCCCCCCcCH
Confidence 9999999876443
No 103
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.74 E-value=2.5e-18 Score=146.69 Aligned_cols=117 Identities=26% Similarity=0.253 Sum_probs=65.4
Q ss_pred cchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhcccc----ccccccccchhhhcCCCCCEEeccCC
Q 041723 64 SSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ----LNYLTGEILVEIRKLTQLHILRLAEN 139 (228)
Q Consensus 64 ~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~----~~~l~~~~~~~~~~l~~L~~L~ls~n 139 (228)
++|++|+ +++|.+..+|.++.+++|++|++++|.++ .+|..+..+.. .+.+.+ +| .++.+++|++|++++|
T Consensus 131 ~~L~~L~--L~~n~l~~lp~~~~l~~L~~L~l~~N~l~-~lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLG--VSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEE--CCSSCCSSCCCCTTCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEE--CcCCCCCCCcccCCCCCCCEEECCCCcCc-ccCCCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCC
Confidence 3566666 66666655666666667777777777666 35544433333 223333 33 3556666666666666
Q ss_pred cccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCcccc
Q 041723 140 QLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSL 193 (228)
Q Consensus 140 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~ 193 (228)
.+.+ +|.. .++|+.|++++|.++ .+|. +..+++|++|++++|++++
T Consensus 206 ~l~~-l~~~---~~~L~~L~l~~n~l~---~lp~-~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 206 SLKK-LPDL---PLSLESIVAGNNILE---ELPE-LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CCSS-CCCC---CTTCCEEECCSSCCS---SCCC-CTTCTTCCEEECCSSCCSS
T ss_pred cCCc-CCCC---cCcccEEECcCCcCC---cccc-cCCCCCCCEEECCCCcCCc
Confidence 6653 3332 135555566555555 3443 5556666666666666654
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=5.4e-18 Score=131.15 Aligned_cols=149 Identities=18% Similarity=0.159 Sum_probs=115.2
Q ss_pred cccccCCCC---hHHHHhccCCCCeeecCCccCCCCcc-hhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEee
Q 041723 23 MKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVP-YASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLF 96 (228)
Q Consensus 23 ~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~ 96 (228)
+.++++++. +|..+. ..+++|++++|.+++..+ ..+..+++|++|+ +++|.+..++ .+..+++|++|+++
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~--L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKIN--FSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEE--CCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEE--CCCCcCCEECHHHhCCCCCCCEEECC
Confidence 456676665 454443 356888999988877644 4578888899988 9999886665 68888999999999
Q ss_pred CCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhh
Q 041723 97 GNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLL 176 (228)
Q Consensus 97 ~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~ 176 (228)
+|.+++ ++. ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++ ..|..+.
T Consensus 90 ~N~l~~-~~~----------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~ 150 (220)
T 2v70_A 90 SNRLEN-VQH----------------KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT--VAPGAFD 150 (220)
T ss_dssp SSCCCC-CCG----------------GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC--BCTTTTT
T ss_pred CCccCc-cCH----------------hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE--ECHHHhc
Confidence 998873 332 235677888999999999887667788888899999999998886 5577888
Q ss_pred cCCCCCEEEccCCccccc
Q 041723 177 NLESLTALVLSSNKLSLL 194 (228)
Q Consensus 177 ~l~~L~~L~L~~n~l~~~ 194 (228)
.+++|+++++++|++...
T Consensus 151 ~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 151 TLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TCTTCCEEECCSCCEECS
T ss_pred CCCCCCEEEecCcCCcCC
Confidence 888899999999988653
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=6.2e-18 Score=128.52 Aligned_cols=151 Identities=18% Similarity=0.179 Sum_probs=125.0
Q ss_pred hhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCC-Cc-cccCCCC
Q 041723 15 AYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENF-LP-SLGNLTK 89 (228)
Q Consensus 15 ~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~-~p-~~~~l~~ 89 (228)
..+.++++++++++++. +| .+..+++|++|++++|.+.. +..+..+++|++|+ +++|.+.. .+ .++.+++
T Consensus 39 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~--l~~n~l~~~~~~~l~~l~~ 113 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLR--IMGKDVTSDKIPNLSGLTS 113 (197)
T ss_dssp BHHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEE--EECTTCBGGGSCCCTTCTT
T ss_pred ChhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEE--eECCccCcccChhhcCCCC
Confidence 34677899999999997 45 68899999999999997654 45788999999999 99999954 45 8999999
Q ss_pred CcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCc-ccccCccccccCCCCCEEEccCCccccC
Q 041723 90 LNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQ-LEGSVPSSIFELRNLRALDLSDNNLSGT 168 (228)
Q Consensus 90 L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 168 (228)
|++|++++|.+++.. |..++.+++|++|++++|. +. .+| .+..+++|+.|++++|.+++
T Consensus 114 L~~L~Ls~n~i~~~~-----------------~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~- 173 (197)
T 4ezg_A 114 LTLLDISHSAHDDSI-----------------LTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD- 173 (197)
T ss_dssp CCEEECCSSBCBGGG-----------------HHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-
T ss_pred CCEEEecCCccCcHh-----------------HHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-
Confidence 999999999987322 3456788999999999998 66 566 68999999999999999984
Q ss_pred CCcchhhhcCCCCCEEEccCCcccc
Q 041723 169 GDLNMVLLNLESLTALVLSSNKLSL 193 (228)
Q Consensus 169 ~~~p~~~~~l~~L~~L~L~~n~l~~ 193 (228)
++ .+..+++|++|++++|++.+
T Consensus 174 --~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 174 --YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp --CT-TGGGCSSCCEEEECBC----
T ss_pred --hH-HhccCCCCCEEEeeCcccCC
Confidence 44 68889999999999999864
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=7.6e-18 Score=147.05 Aligned_cols=172 Identities=24% Similarity=0.182 Sum_probs=113.2
Q ss_pred cccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeC
Q 041723 21 NAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFG 97 (228)
Q Consensus 21 ~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~ 97 (228)
+++.+++++|. +|..+ .++|++|++++|.++. +| ..+++|++|+ +++|.+..+|.+.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~--Ls~N~l~~ip~l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLD--ACDNRLSTLPELPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEE--CCSSCCSCCCCCCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEE--ccCCCCCCcchhhc--CCCEEECCC
Confidence 67777777776 34433 3567777777777763 44 3467777777 77777766665333 677777777
Q ss_pred CcCCCCCCChhhcccc----ccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcch
Q 041723 98 NDFSGKVPDSLGDLLQ----LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNM 173 (228)
Q Consensus 98 n~l~~~~p~~~~~l~~----~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~ 173 (228)
|.+++ +|..+..|.. .|.+.+ +|. .+++|+.|++++|.+++ +|. +. ++|+.|++++|.++ .+|.
T Consensus 130 N~l~~-lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~---~lp~ 197 (571)
T 3cvr_A 130 NQLTM-LPELPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE---SLPA 197 (571)
T ss_dssp SCCSC-CCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS---SCCC
T ss_pred CcCCC-CCCcCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC---chhh
Confidence 77773 5552222222 233333 443 45788888888888874 666 54 78888888888887 4555
Q ss_pred hhhcCCCC-------CEEEccCCccccccCccccCCCCCcccccccccccccC
Q 041723 174 VLLNLESL-------TALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASS 219 (228)
Q Consensus 174 ~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 219 (228)
+.. +| +.|++++|.++.. |.. +..+++|+.|++++|++++.
T Consensus 198 -~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~-l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 198 -VPV--RNHHSEETEIFFRCRENRITHI-PEN-ILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp -CC----------CCEEEECCSSCCCCC-CGG-GGGSCTTEEEECCSSSCCHH
T ss_pred -HHH--hhhcccccceEEecCCCcceec-CHH-HhcCCCCCEEEeeCCcCCCc
Confidence 433 56 8888888888854 555 55688888888888888653
No 107
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=3.3e-17 Score=124.22 Aligned_cols=126 Identities=24% Similarity=0.387 Sum_probs=72.4
Q ss_pred hhhcCCCCCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCcccccc
Q 041723 73 IAYCKENFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFE 151 (228)
Q Consensus 73 l~~~~~~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 151 (228)
++++.+..+| .+. ++++.|++++|.++ .+|. .+..+++|+.|++++|.+++..+..|..
T Consensus 17 ~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~-----------------~~~~l~~L~~L~Ls~N~i~~i~~~~f~~ 76 (193)
T 2wfh_A 17 CSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPK-----------------ELSNYKHLTLIDLSNNRISTLSNQSFSN 76 (193)
T ss_dssp CTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCG-----------------GGGGCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHH-----------------HhhcccCCCEEECCCCcCCEeCHhHccC
Confidence 4455555555 222 45666666666665 3332 2345556666666666666444455666
Q ss_pred CCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccC
Q 041723 152 LRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTK 226 (228)
Q Consensus 152 l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~ 226 (228)
+++|+.|++++|.+++ ..|..|.++++|++|+|++|.++...+.. +..+++|+.++ +.++++.|+|+
T Consensus 77 l~~L~~L~Ls~N~l~~--i~~~~f~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~-----L~~N~~~C~c~ 143 (193)
T 2wfh_A 77 MTQLLTLILSYNRLRC--IPPRTFDGLKSLRLLSLHGNDISVVPEGA-FNDLSALSHLA-----IGANPLYCDCN 143 (193)
T ss_dssp CTTCCEEECCSSCCCB--CCTTTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCEEE-----CCSSCEECSGG
T ss_pred CCCCCEEECCCCccCE--eCHHHhCCCCCCCEEECCCCCCCeeChhh-hhcCccccEEE-----eCCCCeecCCc
Confidence 6666666666666664 33445666666666666666666555555 56666666666 33334455554
No 108
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=2.1e-17 Score=125.20 Aligned_cols=128 Identities=23% Similarity=0.300 Sum_probs=79.8
Q ss_pred CeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-c--ccCCCCCcEEEeeCCcCCCCCCChhhcccccccccc
Q 041723 43 KVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-S--LGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTG 119 (228)
Q Consensus 43 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~--~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~ 119 (228)
++++++++.++. +|..+.. ++++|+ +++|.+..++ . +..+++|++|++++|.+++..|.
T Consensus 11 ~~l~~s~~~l~~-ip~~~~~--~l~~L~--l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------- 72 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIPL--HTTELL--LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN------------- 72 (192)
T ss_dssp TEEECTTSCCSS-CCSCCCT--TCSEEE--CCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-------------
T ss_pred CEEEcCCCCcCc-CccCCCC--CCCEEE--CCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh-------------
Confidence 567777776643 4443322 566666 7777765554 2 66667777777777766633332
Q ss_pred ccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccc
Q 041723 120 EILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL 194 (228)
Q Consensus 120 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 194 (228)
.+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++ ..|..+..+++|+++++++|++.+.
T Consensus 73 ----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 73 ----AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC--VMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp ----TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE--ECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred ----HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCe--eCHHHhhcCCCCCEEEeCCCCccCc
Confidence 23455667777777777765555556667777777777777665 4556666666777777777766654
No 109
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=3.1e-19 Score=151.96 Aligned_cols=96 Identities=17% Similarity=0.111 Sum_probs=49.4
Q ss_pred cCCcccccchhh-hcccccccccccCCCCh--------HHHHhccCCCCeeecCCccCCCCcchhc-cCCc----chHHH
Q 041723 4 HGTRKKKIATAA-YGTASNAMKTLLQSPSL--------ANLAEKLANLKVLHLGQVNTASTVPYAS-ANLS----SLFSL 69 (228)
Q Consensus 4 ~~~~~~~~~~~~-~~~l~~l~~l~l~~~~l--------~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~----~L~~L 69 (228)
+++++....... +..+++++++++++|.+ ++.+..+++|++|++++|.+....+..+ ..++ +|++|
T Consensus 11 s~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L 90 (461)
T 1z7x_W 11 QCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL 90 (461)
T ss_dssp ESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEE
T ss_pred hhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEE
Confidence 344444433332 55556666666666652 3345555666666666665543322222 2233 46666
Q ss_pred HHhhhhcCCC-----CCc-cccCCCCCcEEEeeCCcCC
Q 041723 70 LSLIAYCKEN-----FLP-SLGNLTKLNDLYLFGNDFS 101 (228)
Q Consensus 70 ~~~l~~~~~~-----~~p-~~~~l~~L~~L~l~~n~l~ 101 (228)
+ +++|.+. .++ .+..+++|++|++++|.++
T Consensus 91 ~--L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 91 S--LQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp E--CTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred E--ccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 6 6666653 234 5555666666666666554
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=6.6e-19 Score=153.96 Aligned_cols=184 Identities=18% Similarity=0.189 Sum_probs=143.4
Q ss_pred CCcCCcccccchhhhcccccccccccCCCC-----------------hHHHHhccCCCCeee-cCCccCCCCcc-----h
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPS-----------------LANLAEKLANLKVLH-LGQVNTASTVP-----Y 58 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~-----------------l~~~~~~l~~L~~L~-l~~n~~~~~~~-----~ 58 (228)
.+++|+++.+ |..++.+++|+.++++++. .|+.+..+++|+.|+ ++.|.+..... .
T Consensus 355 ~Ls~n~L~~L-p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n 433 (567)
T 1dce_A 355 ELSVEKSTVL-QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN 433 (567)
T ss_dssp CCCHHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred cCChhhHHhh-HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcc
Confidence 4556666654 6789999999999986652 356788888899988 55554321100 0
Q ss_pred hccCC--cchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEec
Q 041723 59 ASANL--SSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRL 136 (228)
Q Consensus 59 ~~~~l--~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~l 136 (228)
.+..+ ..|+.|+ +++|.+..+|.++.+++|+.|++++|.++ .+|.. ++.+++|+.|++
T Consensus 434 ~i~~l~~~~L~~L~--Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~-~lp~~-----------------~~~l~~L~~L~L 493 (567)
T 1dce_A 434 SVLKMEYADVRVLH--LAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPA-----------------LAALRCLEVLQA 493 (567)
T ss_dssp HHHHHHHTTCSEEE--CTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGG-----------------GGGCTTCCEEEC
T ss_pred cccccCccCceEEE--ecCCCCCCCcCccccccCcEeecCccccc-ccchh-----------------hhcCCCCCEEEC
Confidence 11111 2477888 99999988998999999999999999998 66644 567889999999
Q ss_pred cCCcccccCccccccCCCCCEEEccCCccccCCCc-chhhhcCCCCCEEEccCCccccccCcc--ccCCCCCccccc
Q 041723 137 AENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDL-NMVLLNLESLTALVLSSNKLSLLAGTT--VNTNLPNFTIIG 210 (228)
Q Consensus 137 s~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~l~~L~~l~ 210 (228)
++|.+++ +| .++.+++|+.|++++|.+++ .. |..+..+++|+.|++++|++++.++.. .+..+++|+.|+
T Consensus 494 s~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~--~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 494 SDNALEN-VD-GVANLPRLQELLLCNNRLQQ--SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CSSCCCC-CG-GGTTCSSCCEEECCSSCCCS--SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCC-Cc-ccCCCCCCcEEECCCCCCCC--CCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 9999995 77 79999999999999999996 44 889999999999999999999876542 133478888875
No 111
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.70 E-value=4.6e-19 Score=150.94 Aligned_cols=201 Identities=17% Similarity=0.115 Sum_probs=113.0
Q ss_pred hhcccccccccccCCCChHH----HHh-----ccCCCCeeecCCccCCCC----cchhccCCcchHHHHHhhhhcCCCCC
Q 041723 15 AYGTASNAMKTLLQSPSLAN----LAE-----KLANLKVLHLGQVNTAST----VPYASANLSSLFSLLSLIAYCKENFL 81 (228)
Q Consensus 15 ~~~~l~~l~~l~l~~~~l~~----~~~-----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~~~l~~~~~~~~ 81 (228)
.+..+++|+++++++|.+.+ .+. ..++|++|++++|.++.. ++..+..+++|++|+ +++|.++..
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~--Ls~n~l~~~ 242 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA--LGSNKLGDV 242 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEE--CCSSBCHHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEe--ccCCcCChH
Confidence 34444566666666665321 111 234666666666666543 345555566666666 666666221
Q ss_pred ------c-cccCCCCCcEEEeeCCcCCCC----CCChhhcccccccc-------ccccchhhhc-----CCCCCEEeccC
Q 041723 82 ------P-SLGNLTKLNDLYLFGNDFSGK----VPDSLGDLLQLNYL-------TGEILVEIRK-----LTQLHILRLAE 138 (228)
Q Consensus 82 ------p-~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~~~~l-------~~~~~~~~~~-----l~~L~~L~ls~ 138 (228)
+ .+..+++|+.|++++|.+++. ++..+..++.+..+ .+..+..+.. .++|+.|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 2 222456677777776666521 33333333332222 2211112221 24677777777
Q ss_pred Cccccc----CccccccCCCCCEEEccCCccccCCCcchhhhc-----CCCCCEEEccCCcccc----ccCccccCCCCC
Q 041723 139 NQLEGS----VPSSIFELRNLRALDLSDNNLSGTGDLNMVLLN-----LESLTALVLSSNKLSL----LAGTTVNTNLPN 205 (228)
Q Consensus 139 n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~-----l~~L~~L~L~~n~l~~----~~~~~~~~~l~~ 205 (228)
|.+++. ++..+..+++|+.|++++|.+++ ..+..+.. .+.|++|++++|.+++ .++.. +..+++
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~--~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~ 399 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLED--AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT-LLANHS 399 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH--HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-HHHCCC
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCcccc--ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH-HHhCCC
Confidence 776643 34455666778888888877765 33333322 5678888888888775 44555 666788
Q ss_pred cccccccccccccCc
Q 041723 206 FTIIGSVHETLASSH 220 (228)
Q Consensus 206 L~~l~l~~n~~~~~~ 220 (228)
|++|++++|++++.+
T Consensus 400 L~~L~l~~N~i~~~~ 414 (461)
T 1z7x_W 400 LRELDLSNNCLGDAG 414 (461)
T ss_dssp CCEEECCSSSCCHHH
T ss_pred ccEEECCCCCCCHHH
Confidence 888888888877653
No 112
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=1e-17 Score=138.19 Aligned_cols=198 Identities=18% Similarity=0.185 Sum_probs=139.1
Q ss_pred CCcccccchhhhcccccccccccCCCC---hHH-HHhccCCCCeeecCCccCCCCcc-hhccCCcchHH-HHHhhhhcCC
Q 041723 5 GTRKKKIATAAYGTASNAMKTLLQSPS---LAN-LAEKLANLKVLHLGQVNTASTVP-YASANLSSLFS-LLSLIAYCKE 78 (228)
Q Consensus 5 ~~~~~~~~~~~~~~l~~l~~l~l~~~~---l~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~-L~~~l~~~~~ 78 (228)
+++++.++.. + .+++++|++++|. +|+ +|..+++|++|++++|.+.+.++ .+|..++++.. +. +..|++
T Consensus 18 ~~~Lt~iP~~-l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~--~~~N~l 92 (350)
T 4ay9_X 18 ESKVTEIPSD-L--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI--EKANNL 92 (350)
T ss_dssp STTCCSCCTT-C--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE--EEETTC
T ss_pred CCCCCccCcC-c--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc--ccCCcc
Confidence 4555655432 2 2478999999998 454 68899999999999998876554 56788888765 45 667888
Q ss_pred CCCc--cccCCCCCcEEEeeCCcCCCCCCChhhccccc--------cccccccchhhhcCC-CCCEEeccCCcccccCcc
Q 041723 79 NFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL--------NYLTGEILVEIRKLT-QLHILRLAENQLEGSVPS 147 (228)
Q Consensus 79 ~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~--------~~l~~~~~~~~~~l~-~L~~L~ls~n~l~~~~~~ 147 (228)
..++ .+..+++|++|++++|.+.+..+..+...... +.+....+..+..+. .++.|++++|.++ .++.
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~ 171 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHN 171 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECT
T ss_pred cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCCh
Confidence 7765 78889999999999999984333333332221 222222233444543 5888999999998 5665
Q ss_pred ccccCCCCCEEEccC-CccccCCCcch-hhhcCCCCCEEEccCCccccccCccccCCCCCccccccc
Q 041723 148 SIFELRNLRALDLSD-NNLSGTGDLNM-VLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSV 212 (228)
Q Consensus 148 ~~~~l~~L~~L~l~~-n~~~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~ 212 (228)
......+|+.+++.+ |.++ .+|. .|.++++|++|++++|+++..++.. +.++++|+.++..
T Consensus 172 ~~f~~~~L~~l~l~~~n~l~---~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~-~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 172 SAFNGTQLDELNLSDNNNLE---ELPNDVFHGASGPVILDISRTRIHSLPSYG-LENLKKLRARSTY 234 (350)
T ss_dssp TSSTTEEEEEEECTTCTTCC---CCCTTTTTTEECCSEEECTTSCCCCCCSSS-CTTCCEEECTTCT
T ss_pred hhccccchhHHhhccCCccc---CCCHHHhccCcccchhhcCCCCcCccChhh-hccchHhhhccCC
Confidence 555667899999975 5565 5654 5788999999999999998776666 6666666665543
No 113
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=7.6e-17 Score=142.16 Aligned_cols=178 Identities=22% Similarity=0.250 Sum_probs=83.7
Q ss_pred ccccccccCCCChHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCcc-c--------------
Q 041723 20 SNAMKTLLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLPS-L-------------- 84 (228)
Q Consensus 20 ~~l~~l~l~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~-~-------------- 84 (228)
+++++|++++|.+...-..+++|++|++++|.+++ +|. .+++|++|+ +++|.+..+|. +
T Consensus 61 ~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~--Ls~N~l~~l~~~l~~L~~L~L~~N~l~ 134 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTS-LPV---LPPGLLELS--IFSNPLTHLPALPSGLCKLWIFGNQLT 134 (622)
T ss_dssp TTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCSC-CCC---CCTTCCEEE--ECSCCCCCCCCCCTTCCEEECCSSCCS
T ss_pred CCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE--CcCCcCCCCCCCCCCcCEEECCCCCCC
Confidence 35555555555422111134555555555555543 222 334444444 44444433332 0
Q ss_pred ---cCCCCCcEEEeeCCcCCCCCCChhhccccc----cccccccchhhhcCCCCCEEeccCCcccccCccccc-------
Q 041723 85 ---GNLTKLNDLYLFGNDFSGKVPDSLGDLLQL----NYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIF------- 150 (228)
Q Consensus 85 ---~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~----~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~------- 150 (228)
..+++|++|++++|.++ .+|..+..+..+ |.+.+ +| ..+++|+.|++++|.+++ +|..+.
T Consensus 135 ~lp~~l~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L 208 (622)
T 3g06_A 135 SLPVLPPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTLPSELYKLWA 208 (622)
T ss_dssp CCCCCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCCCTTCCEEEC
T ss_pred cCCCCCCCCCEEECcCCcCC-CcCCccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCccchhhEEEC
Confidence 01255556666666555 333333332221 11211 22 223566666676666653 332211
Q ss_pred ----------cCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCc
Q 041723 151 ----------ELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSH 220 (228)
Q Consensus 151 ----------~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 220 (228)
.+++|+.|++++|.++ .+| ..+++|+.|++++|.++..+. .+++|+.|++++|+++..|
T Consensus 209 ~~N~l~~l~~~~~~L~~L~Ls~N~L~---~lp---~~l~~L~~L~Ls~N~L~~lp~-----~~~~L~~L~Ls~N~L~~lp 277 (622)
T 3g06_A 209 YNNRLTSLPALPSGLKELIVSGNRLT---SLP---VLPSELKELMVSGNRLTSLPM-----LPSGLLSLSVYRNQLTRLP 277 (622)
T ss_dssp CSSCCSSCCCCCTTCCEEECCSSCCS---CCC---CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCCSCC
T ss_pred cCCcccccCCCCCCCCEEEccCCccC---cCC---CCCCcCcEEECCCCCCCcCCc-----ccccCcEEeCCCCCCCcCC
Confidence 1244555555555555 233 234556666666666654322 3456667777777766443
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=7.1e-17 Score=119.42 Aligned_cols=132 Identities=25% Similarity=0.231 Sum_probs=76.7
Q ss_pred cCCCCeeecCCccCC-CCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhcccccccc
Q 041723 39 LANLKVLHLGQVNTA-STVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYL 117 (228)
Q Consensus 39 l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l 117 (228)
.++|++|++++|.+. +.+|..+..+++|++|+ +++|.+..++.+..+++|++|++++|.+++.+|.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~--l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------- 89 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLS--LINVGLISVSNLPKLPKLKKLELSENRIFGGLDM----------- 89 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEE--EESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCH-----------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEe--CcCCCCCChhhhccCCCCCEEECcCCcCchHHHH-----------
Confidence 467777888777776 45565566666666666 6666664445555666666666666666532221
Q ss_pred ccccchhhhcCCCCCEEeccCCcccccCc--cccccCCCCCEEEccCCccccCCCcch----hhhcCCCCCEEEccCCcc
Q 041723 118 TGEILVEIRKLTQLHILRLAENQLEGSVP--SSIFELRNLRALDLSDNNLSGTGDLNM----VLLNLESLTALVLSSNKL 191 (228)
Q Consensus 118 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~p~----~~~~l~~L~~L~L~~n~l 191 (228)
.++.+++|+.|++++|.+++ ++ ..+..+++|+.|++++|.+++ +|. .+..+++|++|++++|.+
T Consensus 90 ------~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~---~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 90 ------LAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTN---LNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ------HHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGT---STTHHHHHHTTCSSCCEETTEETTS
T ss_pred ------HHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcc---hHHHHHHHHHhCccCcEecCCCCCh
Confidence 23345566666666666653 22 445556666666666666653 222 455555666666665555
Q ss_pred cc
Q 041723 192 SL 193 (228)
Q Consensus 192 ~~ 193 (228)
..
T Consensus 160 ~~ 161 (168)
T 2ell_A 160 QE 161 (168)
T ss_dssp CB
T ss_pred hh
Confidence 43
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=6.5e-17 Score=119.64 Aligned_cols=133 Identities=25% Similarity=0.316 Sum_probs=114.8
Q ss_pred CcchHHHHHhhhhcCCC--CCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCC
Q 041723 63 LSSLFSLLSLIAYCKEN--FLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAEN 139 (228)
Q Consensus 63 l~~L~~L~~~l~~~~~~--~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n 139 (228)
.++|++|+ +++|.+. .+| .+..+++|+.|++++|.+++. . .+..+++|++|++++|
T Consensus 23 ~~~L~~L~--l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~-----------------~~~~l~~L~~L~Ls~N 81 (168)
T 2ell_A 23 PAAVRELV--LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S-----------------NLPKLPKLKKLELSEN 81 (168)
T ss_dssp TTSCSEEE--CCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S-----------------SCCCCSSCCEEEEESC
T ss_pred cccCCEEE--CCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h-----------------hhccCCCCCEEECcCC
Confidence 46788899 9999996 888 778999999999999998833 2 3567889999999999
Q ss_pred cccccCccccccCCCCCEEEccCCccccCCCcc--hhhhcCCCCCEEEccCCccccccC---ccccCCCCCccccccccc
Q 041723 140 QLEGSVPSSIFELRNLRALDLSDNNLSGTGDLN--MVLLNLESLTALVLSSNKLSLLAG---TTVNTNLPNFTIIGSVHE 214 (228)
Q Consensus 140 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p--~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~l~l~~n 214 (228)
.+.+.+|..+..+++|+.|++++|.+++ +| ..+..+++|++|++++|++++..+ .. +..+++|++|++++|
T Consensus 82 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~-~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 82 RIFGGLDMLAEKLPNLTHLNLSGNKLKD---ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESV-FKLLPQLTYLDGYDR 157 (168)
T ss_dssp CCCSCCCHHHHHCTTCCEEECBSSSCCS---SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHH-HTTCSSCCEETTEET
T ss_pred cCchHHHHHHhhCCCCCEEeccCCccCc---chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHH-HHhCccCcEecCCCC
Confidence 9997678878889999999999999985 44 678899999999999999998765 45 889999999999999
Q ss_pred ccccCc
Q 041723 215 TLASSH 220 (228)
Q Consensus 215 ~~~~~~ 220 (228)
.+...+
T Consensus 158 ~~~~~~ 163 (168)
T 2ell_A 158 EDQEAP 163 (168)
T ss_dssp TSCBCC
T ss_pred Chhhcc
Confidence 887654
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=1.1e-16 Score=132.57 Aligned_cols=155 Identities=20% Similarity=0.181 Sum_probs=127.3
Q ss_pred CCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--ccc-CCCCCcEEEeeCCcCCCCCCChhhccccccccc
Q 041723 42 LKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLG-NLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT 118 (228)
Q Consensus 42 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~ 118 (228)
-+.++.+++.+.. +|..+. +.++.|+ +++|.+..++ .+. .+++|+.|++++|.+++..+.
T Consensus 20 ~~~l~c~~~~l~~-iP~~~~--~~l~~L~--Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~------------ 82 (361)
T 2xot_A 20 SNILSCSKQQLPN-VPQSLP--SYTALLD--LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE------------ 82 (361)
T ss_dssp TTEEECCSSCCSS-CCSSCC--TTCSEEE--CCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTT------------
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCCEEE--CCCCCCCccChhhhhhcccccCEEECCCCcCCccChh------------
Confidence 3689999998876 454432 4578889 9999997776 566 899999999999999833222
Q ss_pred cccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCcc
Q 041723 119 GEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTT 198 (228)
Q Consensus 119 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 198 (228)
.+..+++|++|++++|.+....+..|..+++|+.|++++|.++. ..|..+..+++|++|+|++|.+++.++..
T Consensus 83 -----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 83 -----AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV--VDRNAFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp -----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred -----hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE--ECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence 35678899999999999996656678999999999999999996 55778999999999999999999876655
Q ss_pred cc---CCCCCcccccccccccccCcc
Q 041723 199 VN---TNLPNFTIIGSVHETLASSHI 221 (228)
Q Consensus 199 ~~---~~l~~L~~l~l~~n~~~~~~~ 221 (228)
+ ..+++|+.|++++|+++..+.
T Consensus 156 -~~~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 156 -IKDGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp -TC----CTTCCEEECCSSCCCCCCH
T ss_pred -hcCcccCCcCCEEECCCCCCCccCH
Confidence 5 579999999999999997664
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=4.8e-17 Score=134.19 Aligned_cols=191 Identities=18% Similarity=0.127 Sum_probs=139.5
Q ss_pred cccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCC-CCCc--cccCCCCCcE-EEeeC
Q 041723 25 TLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKE-NFLP--SLGNLTKLND-LYLFG 97 (228)
Q Consensus 25 l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~-~~~p--~~~~l~~L~~-L~l~~ 97 (228)
++.+++. +|..+ .+++++|++++|+++...+.+|.++++|++|+ +++|.+ +.+| .|.++++++. +.+.+
T Consensus 14 v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~--Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIE--ISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEE--EECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEE--CcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4444443 56655 36899999999999876667899999999999 999998 6676 6788998876 55677
Q ss_pred CcCCCCCCChhhcccccccc-------ccccchhhhcCCCCCEEeccC-CcccccCccccccC-CCCCEEEccCCccccC
Q 041723 98 NDFSGKVPDSLGDLLQLNYL-------TGEILVEIRKLTQLHILRLAE-NQLEGSVPSSIFEL-RNLRALDLSDNNLSGT 168 (228)
Q Consensus 98 n~l~~~~p~~~~~l~~~~~l-------~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~ 168 (228)
|+++...|..+..++++..+ ....+..+....++..+++.+ +.+....+..+..+ ..++.|++++|.++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-- 167 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-- 167 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC--
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc--
Confidence 88885456666666664433 333333444556677787765 45553333445555 46889999999998
Q ss_pred CCcchhhhcCCCCCEEEccC-CccccccCccccCCCCCcccccccccccccCcccc
Q 041723 169 GDLNMVLLNLESLTALVLSS-NKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFC 223 (228)
Q Consensus 169 ~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 223 (228)
.+|.......+++++++.+ |.++...+.. +..+++|++|++++|+++..|...
T Consensus 168 -~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~-f~~l~~L~~LdLs~N~l~~lp~~~ 221 (350)
T 4ay9_X 168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISRTRIHSLPSYG 221 (350)
T ss_dssp -EECTTSSTTEEEEEEECTTCTTCCCCCTTT-TTTEECCSEEECTTSCCCCCCSSS
T ss_pred -CCChhhccccchhHHhhccCCcccCCCHHH-hccCcccchhhcCCCCcCccChhh
Confidence 5666665667899999974 6777665666 899999999999999999876543
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=1.5e-17 Score=149.39 Aligned_cols=142 Identities=18% Similarity=0.180 Sum_probs=89.2
Q ss_pred HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcEEEeeCCcCCCCCCChhhcc
Q 041723 33 ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDL 111 (228)
Q Consensus 33 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 111 (228)
++.+..+..|++|++++|.+. .+|..+..+++|++|+ +++|.+..+| .++.+++|++|++++|.++ .+|..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~--Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~---- 288 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLY--LNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAE---- 288 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCB--CTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSS----
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEE--eeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChh----
Confidence 445666677777777777765 3555555677777777 7777776666 6667777777777777776 44543
Q ss_pred ccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCC-CCCEEEccCCc
Q 041723 112 LQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLE-SLTALVLSSNK 190 (228)
Q Consensus 112 ~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~-~L~~L~L~~n~ 190 (228)
++.+++|+.|++++|.+. .+|..|+.+++|+.|++++|.+++ .+|..+.... ....+++++|.
T Consensus 289 -------------~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~~~~~~~~l~l~~N~ 352 (727)
T 4b8c_D 289 -------------LGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK--QFLKILTEKSVTGLIFYLRDNR 352 (727)
T ss_dssp -------------GGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS--HHHHHHHHHHHHHHHHHHHHCC
T ss_pred -------------hcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC--CChHHHhhcchhhhHHhhccCc
Confidence 345566777777777776 566667777777777777777775 5555554332 12235667777
Q ss_pred cccccCcc
Q 041723 191 LSLLAGTT 198 (228)
Q Consensus 191 l~~~~~~~ 198 (228)
+++.+|..
T Consensus 353 l~~~~p~~ 360 (727)
T 4b8c_D 353 PEIPLPHE 360 (727)
T ss_dssp CCCCCCCC
T ss_pred ccCcCccc
Confidence 76655544
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=3e-16 Score=113.74 Aligned_cols=109 Identities=24% Similarity=0.269 Sum_probs=53.2
Q ss_pred cCCCCeeecCCccCC-CCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhcccccccc
Q 041723 39 LANLKVLHLGQVNTA-STVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYL 117 (228)
Q Consensus 39 l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l 117 (228)
.+++++|++++|.+. +.+|..+..+++|++|+ +++|.+..++.+..+++|++|++++|.+++.+|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~--l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~------------ 81 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLS--TINVGLTSIANLPKLNKLKKLELSDNRVSGGLE------------ 81 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEE--CTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTH------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEE--CcCCCCCCchhhhcCCCCCEEECCCCcccchHH------------
Confidence 356666777666665 44555555555555555 555555333444445555555555555442222
Q ss_pred ccccchhhhcCCCCCEEeccCCccccc-CccccccCCCCCEEEccCCccc
Q 041723 118 TGEILVEIRKLTQLHILRLAENQLEGS-VPSSIFELRNLRALDLSDNNLS 166 (228)
Q Consensus 118 ~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~ 166 (228)
..++.+++|++|++++|.+.+. .+..+..+++|+.|++++|.++
T Consensus 82 -----~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 82 -----VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp -----HHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred -----HHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 1223344455555555554421 1134444445555555555444
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.64 E-value=9.1e-17 Score=140.23 Aligned_cols=177 Identities=19% Similarity=0.178 Sum_probs=137.2
Q ss_pred CCcCCcccccchhhhcccccccccccCCCChHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCC
Q 041723 2 WHHGTRKKKIATAAYGTASNAMKTLLQSPSLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFL 81 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~ 81 (228)
.++++.+..++... .++|++|++++|.+...-..+++|++|++++|.+++ +|. +.. +|++|+ +++|.+..+
T Consensus 65 ~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~--Ls~N~l~~l 135 (571)
T 3cvr_A 65 QLNRLNLSSLPDNL---PPQITVLEITQNALISLPELPASLEYLDACDNRLST-LPE-LPA--SLKHLD--VDNNQLTML 135 (571)
T ss_dssp ECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE--CCSSCCSCC
T ss_pred EeCCCCCCccCHhH---cCCCCEEECcCCCCcccccccCCCCEEEccCCCCCC-cch-hhc--CCCEEE--CCCCcCCCC
Confidence 45677777765433 268999999999843211567899999999999987 565 554 899999 999999778
Q ss_pred ccccCCCCCcEEEeeCCcCCCCCCChhhcccc----ccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCC--
Q 041723 82 PSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ----LNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNL-- 155 (228)
Q Consensus 82 p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~----~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L-- 155 (228)
|. .+++|+.|++++|.++ .+|..+..|.. .|.+.+ +|. +. ++|+.|++++|.++ .+|. +.. +|
T Consensus 136 p~--~l~~L~~L~Ls~N~l~-~lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~ 204 (571)
T 3cvr_A 136 PE--LPALLEYINADNNQLT-MLPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHH 204 (571)
T ss_dssp CC--CCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC-------
T ss_pred CC--cCccccEEeCCCCccC-cCCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhc
Confidence 87 6899999999999998 47764333333 344444 665 54 89999999999999 6777 554 77
Q ss_pred -----CEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCC
Q 041723 156 -----RALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTN 202 (228)
Q Consensus 156 -----~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 202 (228)
+.|++++|.++ .+|..+..+++|+.|++++|++++..|.. +..
T Consensus 205 ~~~~L~~L~Ls~N~l~---~lp~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~ 252 (571)
T 3cvr_A 205 SEETEIFFRCRENRIT---HIPENILSLDPTCTIILEDNPLSSRIRES-LSQ 252 (571)
T ss_dssp ---CCEEEECCSSCCC---CCCGGGGGSCTTEEEECCSSSCCHHHHHH-HHH
T ss_pred ccccceEEecCCCcce---ecCHHHhcCCCCCEEEeeCCcCCCcCHHH-HHH
Confidence 99999999999 68888888999999999999999887766 544
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=1.2e-17 Score=149.96 Aligned_cols=177 Identities=21% Similarity=0.156 Sum_probs=115.8
Q ss_pred cchhhhcccccccccccCCCC---hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccC
Q 041723 11 IATAAYGTASNAMKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGN 86 (228)
Q Consensus 11 ~~~~~~~~l~~l~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~ 86 (228)
+.+..+..+.+|+.|+|++|. +|+.+..+++|++|++++|.++ .+|..+..+++|++|+ +++|.+..+| .++.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~--Ls~N~l~~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLD--LSHNRLTSLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEE--CTTSCCSSCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEe--CcCCcCCccChhhcC
Confidence 457778999999999999997 6788889999999999999998 6889999999999999 9999999999 9999
Q ss_pred CCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCC-CCCEEEccCCcc
Q 041723 87 LTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELR-NLRALDLSDNNL 165 (228)
Q Consensus 87 l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~~ 165 (228)
+++|++|++++|.++ .+|.. ++.+++|+.|++++|.+.+.+|..+..+. .+..+++++|.+
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~-----------------~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWE-----------------FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSS-----------------TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCEEECCCCCCC-ccChh-----------------hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence 999999999999997 66654 56778999999999999987777665432 223467888888
Q ss_pred ccCCCcchhhhcCCCCCEEEccCC--------ccccccCccccCCCCCcccccccccccc
Q 041723 166 SGTGDLNMVLLNLESLTALVLSSN--------KLSLLAGTTVNTNLPNFTIIGSVHETLA 217 (228)
Q Consensus 166 ~~~~~~p~~~~~l~~L~~L~L~~n--------~l~~~~~~~~~~~l~~L~~l~l~~n~~~ 217 (228)
++ .+|.. ++.++++.| .+.+..+.. +..+..++...+++|.+.
T Consensus 354 ~~--~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~-~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 354 EI--PLPHE------RRFIEINTDGEPQREYDSLQQSTEHL-ATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp CC--CCCCC------------------------------------------------CCC
T ss_pred cC--cCccc------cceeEeecccccccccCCccccccch-hhcccccceeeeeccccc
Confidence 76 66654 445556555 222222333 444555566666666653
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=2.3e-16 Score=114.38 Aligned_cols=128 Identities=23% Similarity=0.271 Sum_probs=105.5
Q ss_pred CcchHHHHHhhhhcCCC--CCc-cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCC
Q 041723 63 LSSLFSLLSLIAYCKEN--FLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAEN 139 (228)
Q Consensus 63 l~~L~~L~~~l~~~~~~--~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n 139 (228)
.++++.|+ +++|.+. .+| .+..+++|+.|++++|.+++. . .++.+++|++|++++|
T Consensus 16 ~~~l~~L~--l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~-----------------~~~~l~~L~~L~Ls~n 74 (149)
T 2je0_A 16 PSDVKELV--LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A-----------------NLPKLNKLKKLELSDN 74 (149)
T ss_dssp GGGCSEEE--CTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T-----------------TCCCCTTCCEEECCSS
T ss_pred CccCeEEE--ccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h-----------------hhhcCCCCCEEECCCC
Confidence 36788888 9999996 788 778899999999999998733 1 3567889999999999
Q ss_pred cccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccC---ccccCCCCCcccccccc
Q 041723 140 QLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAG---TTVNTNLPNFTIIGSVH 213 (228)
Q Consensus 140 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~l~l~~ 213 (228)
.+.+.+|..+..+++|+.|++++|.+++. ..+..+..+++|++|++++|++++..+ .. +..+++|+.|++++
T Consensus 75 ~i~~~~~~~~~~l~~L~~L~ls~N~i~~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-~~~l~~L~~L~l~d 149 (149)
T 2je0_A 75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDL-STIEPLKKLENLKSLDLFNCEVTNLNDYRENV-FKLLPQLTYLDGYD 149 (149)
T ss_dssp CCCSCTHHHHHHCTTCCEEECTTSCCCSH-HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHH-HHHCTTCCEETTBC
T ss_pred cccchHHHHhhhCCCCCEEECCCCcCCCh-HHHHHHhhCCCCCEEeCcCCcccchHHHHHHH-HHHCCCcccccCCC
Confidence 99866788788899999999999999841 123678899999999999999988766 45 78899999998753
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=6.9e-16 Score=116.75 Aligned_cols=124 Identities=19% Similarity=0.180 Sum_probs=100.3
Q ss_pred cccccCCCC---hHHHHhccCCCCeeecCCccCCCCcch-hccCCcchHHHHHhhhhcCCCCC-c-cccCCCCCcEEEee
Q 041723 23 MKTLLQSPS---LANLAEKLANLKVLHLGQVNTASTVPY-ASANLSSLFSLLSLIAYCKENFL-P-SLGNLTKLNDLYLF 96 (228)
Q Consensus 23 ~~l~l~~~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~~~l~~~~~~~~-p-~~~~l~~L~~L~l~ 96 (228)
+.++++++. +|..+.. ++++|++++|.+.+..+. .+..+++|++|+ +++|.+..+ | .+..+++|++|+++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~--Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLE--LKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEE--CCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEE--CCCCCCCCcCHhHcCCcccCCEEECC
Confidence 567777775 5554433 899999999998876654 488999999999 999999555 5 88899999999999
Q ss_pred CCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCcccc
Q 041723 97 GNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSG 167 (228)
Q Consensus 97 ~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 167 (228)
+|.+++..+. .+..+++|++|++++|.+++..|..+..+++|+.+++++|.++.
T Consensus 87 ~N~l~~~~~~-----------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 87 ENKIKEISNK-----------------MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp SCCCCEECSS-----------------SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCcCCccCHH-----------------HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 9998843332 35577889999999999997778888999999999999999886
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.61 E-value=4e-16 Score=116.38 Aligned_cols=132 Identities=16% Similarity=0.166 Sum_probs=68.3
Q ss_pred HhccCCCCeeecCCccCCCCcchhccCC-cchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhccccc
Q 041723 36 AEKLANLKVLHLGQVNTASTVPYASANL-SSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQL 114 (228)
Q Consensus 36 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~ 114 (228)
+.++.+|++|++++|.+... +. +..+ ++|++|+ +++|.+..++.+..+++|++|++++|.++ .+|..+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~--Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~-~~~~~~------ 83 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAID--FSDNEIRKLDGFPLLRRLKTLLVNNNRIC-RIGEGL------ 83 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEE--CCSSCCCEECCCCCCSSCCEEECCSSCCC-EECSCH------
T ss_pred cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEE--CCCCCCCcccccccCCCCCEEECCCCccc-ccCcch------
Confidence 34455666777776666542 32 2222 2555555 55655544455555555555555555554 222211
Q ss_pred cccccccchhhhcCCCCCEEeccCCcccccCcc--ccccCCCCCEEEccCCccccCCCcchh----hhcCCCCCEEEccC
Q 041723 115 NYLTGEILVEIRKLTQLHILRLAENQLEGSVPS--SIFELRNLRALDLSDNNLSGTGDLNMV----LLNLESLTALVLSS 188 (228)
Q Consensus 115 ~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~p~~----~~~l~~L~~L~L~~ 188 (228)
+..+++|+.|++++|.+. .+|. .+..+++|+.|++++|.++ .+|.. +..+++|+.++++.
T Consensus 84 ----------~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~---~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 84 ----------DQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT---NKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp ----------HHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG---GSTTHHHHHHHHCTTCSEETTEE
T ss_pred ----------hhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC---CcHhHHHHHHHHCCccceeCCCc
Confidence 234555555555555554 3343 4555555555555555555 23332 45555555555555
Q ss_pred Cccc
Q 041723 189 NKLS 192 (228)
Q Consensus 189 n~l~ 192 (228)
|...
T Consensus 150 n~~~ 153 (176)
T 1a9n_A 150 VKLK 153 (176)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 5443
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.60 E-value=6.3e-18 Score=128.58 Aligned_cols=156 Identities=22% Similarity=0.224 Sum_probs=112.6
Q ss_pred HhccCCCCeeecCCccCCCCcch------hccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhh
Q 041723 36 AEKLANLKVLHLGQVNTASTVPY------ASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLG 109 (228)
Q Consensus 36 ~~~l~~L~~L~l~~n~~~~~~~~------~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~ 109 (228)
+.....++.++++.+.+.+..|. .+..+++|++|+ +++|.+..+|.+..+++|++|++++|.++ .+|..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~--ls~n~l~~l~~~~~l~~L~~L~l~~n~l~-~l~~~-- 88 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLA--LSTNNIEKISSLSGMENLRILSLGRNLIK-KIENL-- 88 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEE--CSEEEESCCCCHHHHTTCCEEEEEEEEEC-SCSSH--
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEE--CCCCCCccccccccCCCCCEEECCCCCcc-cccch--
Confidence 45556777777777777666555 777788888888 88888866777777888888888888887 55543
Q ss_pred ccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcc--hhhhcCCCCCEEEcc
Q 041723 110 DLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLN--MVLLNLESLTALVLS 187 (228)
Q Consensus 110 ~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p--~~~~~l~~L~~L~L~ 187 (228)
++.+++|++|++++|.+++ +| .+..+++|+.|++++|.+++ ++ ..+..+++|++++++
T Consensus 89 ---------------~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~---~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 89 ---------------DAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN---WGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp ---------------HHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC---HHHHHHHTTTTTCSEEEEC
T ss_pred ---------------hhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc---hhHHHHHhcCCCCCEEEec
Confidence 3345678888888888874 45 57788888888888888873 33 367788888888888
Q ss_pred CCccccccCc---------cccCCCCCccccccccccccc
Q 041723 188 SNKLSLLAGT---------TVNTNLPNFTIIGSVHETLAS 218 (228)
Q Consensus 188 ~n~l~~~~~~---------~~~~~l~~L~~l~l~~n~~~~ 218 (228)
+|++++..|. ..+..+++|+.|+ +|.++.
T Consensus 149 ~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 149 GNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 8888765443 1156678888776 555544
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=7.7e-16 Score=114.80 Aligned_cols=135 Identities=19% Similarity=0.173 Sum_probs=103.9
Q ss_pred hccCCcchHHHHHhhhhcCCCCCccccCCC-CCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEecc
Q 041723 59 ASANLSSLFSLLSLIAYCKENFLPSLGNLT-KLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLA 137 (228)
Q Consensus 59 ~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls 137 (228)
.+....+|+.|+ +++|.+..+|.+..+. +|++|++++|.+++ ++ .++.+++|++|+++
T Consensus 14 ~~~~~~~L~~L~--l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~-~~------------------~l~~l~~L~~L~Ls 72 (176)
T 1a9n_A 14 QYTNAVRDRELD--LRGYKIPVIENLGATLDQFDAIDFSDNEIRK-LD------------------GFPLLRRLKTLLVN 72 (176)
T ss_dssp EEECTTSCEEEE--CTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-EC------------------CCCCCSSCCEEECC
T ss_pred hcCCcCCceEEE--eeCCCCchhHHhhhcCCCCCEEECCCCCCCc-cc------------------ccccCCCCCEEECC
Confidence 355677888888 9999987778555554 89999999998873 21 35577889999999
Q ss_pred CCcccccCccccccCCCCCEEEccCCccccCCCcch--hhhcCCCCCEEEccCCccccccCc---cccCCCCCccccccc
Q 041723 138 ENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNM--VLLNLESLTALVLSSNKLSLLAGT---TVNTNLPNFTIIGSV 212 (228)
Q Consensus 138 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~l~l~ 212 (228)
+|.+++..+..+..+++|+.|++++|.++ .+|. .+..+++|+++++++|+++..... . +..+++|+.++++
T Consensus 73 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~---~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~-~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 73 NNRICRIGEGLDQALPDLTELILTNNSLV---ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYV-IYKVPQVRVLDFQ 148 (176)
T ss_dssp SSCCCEECSCHHHHCTTCCEEECCSCCCC---CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHH-HHHCTTCSEETTE
T ss_pred CCcccccCcchhhcCCCCCEEECCCCcCC---cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHH-HHHCCccceeCCC
Confidence 99988543344588899999999999887 5665 678888999999999998865433 3 6778899999988
Q ss_pred cccccc
Q 041723 213 HETLAS 218 (228)
Q Consensus 213 ~n~~~~ 218 (228)
.|+...
T Consensus 149 ~n~~~~ 154 (176)
T 1a9n_A 149 KVKLKE 154 (176)
T ss_dssp ECCHHH
T ss_pred cCCHHH
Confidence 887653
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=5.8e-15 Score=110.00 Aligned_cols=131 Identities=29% Similarity=0.301 Sum_probs=87.6
Q ss_pred CCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhcccccccccc
Q 041723 42 LKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTG 119 (228)
Q Consensus 42 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~ 119 (228)
.+.+++++++++. +|..+ .+++++|+ +++|.+..+| .+..+++|++|++++|.++ .+|..
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~--l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~------------ 70 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLE--LESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDG------------ 70 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEE--CCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTT------------
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEE--eCCCcccEeCHHHhcCcccccEEECCCCcce-EeChh------------
Confidence 4677777777765 33322 25677777 8888776665 4677778888888887776 33322
Q ss_pred ccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccC
Q 041723 120 EILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAG 196 (228)
Q Consensus 120 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~ 196 (228)
.++.+++|+.|++++|.+++..+..+..+++|+.|++++|.+++ ..+..+..+++|+++++++|++.+..+
T Consensus 71 ----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 71 ----VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS--VPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp ----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ----HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceE--eCHHHhcCCcccCEEEecCCCeeccCc
Confidence 23566777888888888775444556777788888888887774 333345667778888888887766543
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=8.7e-15 Score=110.80 Aligned_cols=126 Identities=24% Similarity=0.270 Sum_probs=64.7
Q ss_pred CeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cccCCCCCcEEEeeCCcCCCCCCChhhcccccccccccc
Q 041723 43 KVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEI 121 (228)
Q Consensus 43 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~ 121 (228)
++++.+++.++. +|..+ .+++++|+ +++|.+..+| .+..+++|+.|++++|.+++..+.
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~--L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~--------------- 72 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI--PRDVTELY--LDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQ--------------- 72 (193)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCCEEE--CCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTT---------------
T ss_pred CEEEcCCCCCCc-CCCCC--CCCCCEEE--CCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHh---------------
Confidence 345555555443 23222 13455555 5555555555 555555666666666655522221
Q ss_pred chhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccc
Q 041723 122 LVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192 (228)
Q Consensus 122 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~ 192 (228)
.+..+++|++|++++|.+++..+..|..+++|+.|++++|.++. ..+..+..+++|+++++++|++.
T Consensus 73 --~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 73 --SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV--VPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp --TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTTTCTTCCEEECCSSCEE
T ss_pred --HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe--eChhhhhcCccccEEEeCCCCee
Confidence 23345555666666666554444455555666666666665553 22223555555666666665554
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=2e-14 Score=107.08 Aligned_cols=109 Identities=28% Similarity=0.294 Sum_probs=71.4
Q ss_pred CCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhcccccccc
Q 041723 40 ANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYL 117 (228)
Q Consensus 40 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l 117 (228)
++|++|++++|.+.+..+..+..+++|++|+ +++|.+..+| .+..+++|++|++++|.++ .+|..
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~--l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~---------- 94 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLS--LSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNG---------- 94 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEE--CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTT----------
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEE--CCCCcceEeChhHccCCCccCEEECCCCCcc-ccCHH----------
Confidence 5677777777777665555667777777777 7777776555 3566777777777777776 33321
Q ss_pred ccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCcccc
Q 041723 118 TGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSG 167 (228)
Q Consensus 118 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 167 (228)
.++.+++|+.|++++|.+++..+..+..+++|+.+++++|.++.
T Consensus 95 ------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 95 ------VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp ------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ------HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 13456677777777777764333345667777777777777664
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=7.4e-14 Score=103.51 Aligned_cols=109 Identities=27% Similarity=0.302 Sum_probs=86.2
Q ss_pred CCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccC
Q 041723 89 KLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGT 168 (228)
Q Consensus 89 ~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 168 (228)
..+.+++++|.++ .+|..+ .++++.|++++|.+++..|..|..+++|+.|++++|.+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~-------------------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~- 68 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI-------------------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV- 68 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC-------------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-
T ss_pred CCCEEEeCCCCcC-ccCccC-------------------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-
Confidence 3578899999887 566432 2578899999999987667778899999999999999885
Q ss_pred CCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCcccccc
Q 041723 169 GDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTT 225 (228)
Q Consensus 169 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~ 225 (228)
..+..|.++++|++|+|++|++++..+.. +..+++|++|++++|. +.|.|
T Consensus 69 -l~~~~f~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~-----~~c~c 118 (170)
T 3g39_A 69 -LPAGVFDKLTQLTQLSLNDNQLKSIPRGA-FDNLKSLTHIWLLNNP-----WDCAC 118 (170)
T ss_dssp -CCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC-----BCTTB
T ss_pred -cChhhccCCCCCCEEECCCCccCEeCHHH-hcCCCCCCEEEeCCCC-----CCCCc
Confidence 44455788899999999999998877777 8889999999966554 45555
No 131
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.51 E-value=1.8e-16 Score=138.90 Aligned_cols=207 Identities=19% Similarity=0.058 Sum_probs=123.3
Q ss_pred hhhcccccccccccCCCCh-----HHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhh-----------cC
Q 041723 14 AAYGTASNAMKTLLQSPSL-----ANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAY-----------CK 77 (228)
Q Consensus 14 ~~~~~l~~l~~l~l~~~~l-----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~-----------~~ 77 (228)
..+..+++|++|++++|.+ +..+..+++|++|+++++-....++..+..+++|++|+ +++ +.
T Consensus 287 ~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~--L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 287 ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR--IERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE--EECCCCSSTTSSTTCC
T ss_pred HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE--eecCccccccccccCc
Confidence 3445566677777776652 23345666666666663211122233334556666666 662 33
Q ss_pred CC--CCc-cccCCCCCcEEEeeCCcCCCCCCChhhc-cccccc-----------ccc-----ccchhhhcCCCCCEEecc
Q 041723 78 EN--FLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGD-LLQLNY-----------LTG-----EILVEIRKLTQLHILRLA 137 (228)
Q Consensus 78 ~~--~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~-l~~~~~-----------l~~-----~~~~~~~~l~~L~~L~ls 137 (228)
++ .++ ....+++|+.|++..+.+++..+..++. ++++.. +++ .++..+..+++|++|+++
T Consensus 365 ~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 365 VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444 (592)
T ss_dssp CCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred cCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence 32 222 2344677777777766666443333333 333222 222 133335667888888887
Q ss_pred CCc--ccccCccccc-cCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccc
Q 041723 138 ENQ--LEGSVPSSIF-ELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHE 214 (228)
Q Consensus 138 ~n~--l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n 214 (228)
+|. +++..+..+. .+++|+.|++++|.+++. .++..+.++++|++|++++|.+++.........+++|++|++++|
T Consensus 445 ~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE-GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp CCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH-HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESC
T ss_pred cCCCCccHHHHHHHHHhCccceEeeccCCCCCHH-HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCC
Confidence 544 4444344443 478899999998888741 345556788899999999998865433321567889999999999
Q ss_pred ccccCcccc
Q 041723 215 TLASSHIFC 223 (228)
Q Consensus 215 ~~~~~~~~~ 223 (228)
++++..+..
T Consensus 524 ~it~~~~~~ 532 (592)
T 3ogk_B 524 RASMTGQDL 532 (592)
T ss_dssp BCCTTCTTG
T ss_pred cCCHHHHHH
Confidence 988775543
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=1.5e-16 Score=120.94 Aligned_cols=150 Identities=19% Similarity=0.225 Sum_probs=119.6
Q ss_pred hcccccccccccCCCC----------hHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-cc
Q 041723 16 YGTASNAMKTLLQSPS----------LANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP-SL 84 (228)
Q Consensus 16 ~~~l~~l~~l~l~~~~----------l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p-~~ 84 (228)
+....++..+++..+. +|..+..+++|++|++++|.+.+ +| .+..+++|++|+ +++|.+..+| .+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~--l~~n~l~~l~~~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILS--LGRNLIKKIENLD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEE--EEEEEECSCSSHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEE--CCCCCcccccchh
Confidence 3444455555555443 34589999999999999999987 55 889999999999 9999998898 66
Q ss_pred cCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCc--cccccCCCCCEEEccC
Q 041723 85 GNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVP--SSIFELRNLRALDLSD 162 (228)
Q Consensus 85 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~L~l~~ 162 (228)
..+++|++|++++|.+++ +| .+..+++|+.|++++|.+.+ ++ ..+..+++|+.+++++
T Consensus 90 ~~~~~L~~L~L~~N~l~~-l~------------------~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 90 AVADTLEELWISYNQIAS-LS------------------GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp HHHHHCSEEEEEEEECCC-HH------------------HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECS
T ss_pred hcCCcCCEEECcCCcCCc-CC------------------ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecC
Confidence 778999999999999983 33 25567889999999999984 33 3688999999999999
Q ss_pred CccccCCCcch----------hhhcCCCCCEEEccCCcccc
Q 041723 163 NNLSGTGDLNM----------VLLNLESLTALVLSSNKLSL 193 (228)
Q Consensus 163 n~~~~~~~~p~----------~~~~l~~L~~L~L~~n~l~~ 193 (228)
|.+++ ..|. .+..+++|+.|+ +++++.
T Consensus 150 N~l~~--~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 150 NPLYN--DYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp CHHHH--HHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred Ccccc--ccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 99975 4333 377899999886 777764
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=2.2e-13 Score=101.36 Aligned_cols=105 Identities=25% Similarity=0.218 Sum_probs=86.7
Q ss_pred CcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCC
Q 041723 90 LNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTG 169 (228)
Q Consensus 90 L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 169 (228)
-+.+++++|+++ .+|..+ .++|+.|++++|.+.+..|..+..+++|+.|++++|.+++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~-------------------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-- 71 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGI-------------------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-- 71 (174)
T ss_dssp SSEEECCSSCCS-SCCSCC-------------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--
T ss_pred CcEEEeCCCCCC-ccCCCc-------------------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc--
Confidence 478999999987 677542 2678999999999997768889999999999999999985
Q ss_pred CcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccc
Q 041723 170 DLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLA 217 (228)
Q Consensus 170 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~ 217 (228)
..+..+.++++|++|+|++|++++.++.. +..+++|++|++++|.+.
T Consensus 72 i~~~~~~~l~~L~~L~L~~N~l~~l~~~~-~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 72 IPTGVFDKLTQLTQLDLNDNHLKSIPRGA-FDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCSEEECCSSCBC
T ss_pred cChhHhCCcchhhEEECCCCccceeCHHH-hccccCCCEEEeCCCCcc
Confidence 33445688999999999999999887777 889999999996666543
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.46 E-value=3.2e-14 Score=116.23 Aligned_cols=196 Identities=15% Similarity=0.146 Sum_probs=139.5
Q ss_pred cccccccccCCCChH---HHHhc-cCCCCeeecCCccCC--------------------CCcchhccC--------Ccch
Q 041723 19 ASNAMKTLLQSPSLA---NLAEK-LANLKVLHLGQVNTA--------------------STVPYASAN--------LSSL 66 (228)
Q Consensus 19 l~~l~~l~l~~~~l~---~~~~~-l~~L~~L~l~~n~~~--------------------~~~~~~~~~--------l~~L 66 (228)
+.+++.|.+.++--. ..+.. +++|++||+++|++. .....+|.+ +++|
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L 103 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL 103 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTC
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCC
Confidence 456777777765311 23334 788999999999887 223456777 9999
Q ss_pred HHHHHhhhhcCCCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhccccccccc--------------------------
Q 041723 67 FSLLSLIAYCKENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT-------------------------- 118 (228)
Q Consensus 67 ~~L~~~l~~~~~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~-------------------------- 118 (228)
+.+. +.+ .+..++ .|.++++|+.+++..|.+....+..|........+.
T Consensus 104 ~~l~--L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~ 180 (329)
T 3sb4_A 104 EKVI--LSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET 180 (329)
T ss_dssp CC-C--BCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred cEEE--CCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence 9999 988 887777 899999999999999987522222222211100000
Q ss_pred -------cccch---------------------------hh-hcCCCCCEEeccCCcccccCccccccCCCCCEEEccCC
Q 041723 119 -------GEILV---------------------------EI-RKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDN 163 (228)
Q Consensus 119 -------~~~~~---------------------------~~-~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n 163 (228)
+.++. .+ ..+++|+.+++++|.++...+..|..+.+|+.+++.+|
T Consensus 181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN 260 (329)
T ss_dssp EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT
T ss_pred eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc
Confidence 00000 00 13789999999999998544567999999999999998
Q ss_pred ccccCCCcchhhhcCCCCC-EEEccCCccccccCccccCCCCCcccccccccccccCccc
Q 041723 164 NLSGTGDLNMVLLNLESLT-ALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIF 222 (228)
Q Consensus 164 ~~~~~~~~p~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 222 (228)
++. .-+..|.++.+|+ .+++.+ .++...+.. |.+|++|+.++++.|.++..+-.
T Consensus 261 -i~~--I~~~aF~~~~~L~~~l~l~~-~l~~I~~~a-F~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 261 -LKT--IGQRVFSNCGRLAGTLELPA-SVTAIEFGA-FMGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp -CCE--ECTTTTTTCTTCCEEEEECT-TCCEECTTT-TTTCTTEEEEEECSSCCCEECTT
T ss_pred -cce--ehHHHhhCChhccEEEEEcc-cceEEchhh-hhCCccCCEEEeCCCccCccchh
Confidence 653 3456789999999 999988 777777777 99999999999999988865443
No 135
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.43 E-value=1.8e-14 Score=126.19 Aligned_cols=184 Identities=14% Similarity=0.030 Sum_probs=97.6
Q ss_pred ccccccCCCC------hHHHHhccCCCCeeecCCccCCCC----cchhccCCcchHHHHHhhhhcCCC-----CCc-ccc
Q 041723 22 AMKTLLQSPS------LANLAEKLANLKVLHLGQVNTAST----VPYASANLSSLFSLLSLIAYCKEN-----FLP-SLG 85 (228)
Q Consensus 22 l~~l~l~~~~------l~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~~~l~~~~~~-----~~p-~~~ 85 (228)
|++|++.++. ++.....+++|++|++++|.+++. ++..+..+++|++|+ +++|.+. .++ .+.
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~--L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLN--FYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEE--CTTCCCSSCCHHHHHHHHH
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEE--eeccCCCccCHHHHHHHHh
Confidence 5555555553 222334556666666666655433 223344455566666 6666553 122 334
Q ss_pred CCCCCcEEEeeCCcCCCCCCChhhccccccccc----------cccchhhhcCCCCCEEeccCCcccccCccccccCCCC
Q 041723 86 NLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT----------GEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNL 155 (228)
Q Consensus 86 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~----------~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L 155 (228)
.+++|+.|++++|.+. .+|..++.++++..+. ...+..+..+++|+.++++++... .+|..+..+++|
T Consensus 218 ~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L 295 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQI 295 (592)
T ss_dssp HCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGC
T ss_pred hCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCC
Confidence 5566666666666555 2444444444433221 112233445556666666654433 455566667777
Q ss_pred CEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccc-cCccccCCCCCccccccc
Q 041723 156 RALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLL-AGTTVNTNLPNFTIIGSV 212 (228)
Q Consensus 156 ~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~l~l~ 212 (228)
++|++++|.+++. .++..+..+++|++|+++ +.+.+. .+.. ...+++|++|+++
T Consensus 296 ~~L~Ls~~~l~~~-~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~-~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 296 RKLDLLYALLETE-DHCTLIQKCPNLEVLETR-NVIGDRGLEVL-AQYCKQLKRLRIE 350 (592)
T ss_dssp CEEEETTCCCCHH-HHHHHHTTCTTCCEEEEE-GGGHHHHHHHH-HHHCTTCCEEEEE
T ss_pred cEEecCCCcCCHH-HHHHHHHhCcCCCEEecc-CccCHHHHHHH-HHhCCCCCEEEee
Confidence 7777777776531 222335667777777777 333322 2222 4567777777777
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.38 E-value=3.7e-13 Score=109.88 Aligned_cols=177 Identities=15% Similarity=0.160 Sum_probs=127.2
Q ss_pred ccchhhhcc--------cccccccccCCCC--hH-HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcC-
Q 041723 10 KIATAAYGT--------ASNAMKTLLQSPS--LA-NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCK- 77 (228)
Q Consensus 10 ~~~~~~~~~--------l~~l~~l~l~~~~--l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~- 77 (228)
.++..+|.+ +++|+.+.+.+.- ++ .+|..+++|+.+++.+|.+....+.+|..+.++..+. .....
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~--~~~~~~ 160 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP--LGSSDA 160 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC--TTCTHH
T ss_pred ccCHHHhcccccccccccCCCcEEECCccccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec--Ccchhh
Confidence 566677777 8888888888732 43 4688888888888888877666666776665555443 22210
Q ss_pred ---CCCCc--ccc--------------------------------------------------CCCCCcEEEeeCCcCCC
Q 041723 78 ---ENFLP--SLG--------------------------------------------------NLTKLNDLYLFGNDFSG 102 (228)
Q Consensus 78 ---~~~~p--~~~--------------------------------------------------~l~~L~~L~l~~n~l~~ 102 (228)
...+. .+. .+++|+.+++.+|.++
T Consensus 161 ~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~- 239 (329)
T 3sb4_A 161 YRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT- 239 (329)
T ss_dssp HHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-
T ss_pred hhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-
Confidence 00110 111 2566777777776665
Q ss_pred CCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccCccccccCCCCC-EEEccCCccccCCCcchhhhcCCCC
Q 041723 103 KVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLR-ALDLSDNNLSGTGDLNMVLLNLESL 181 (228)
Q Consensus 103 ~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~p~~~~~l~~L 181 (228)
.+|+. .|..+++|+.+++.+| +....+.+|.++.+|+ .+++.+ .++. .-+..|.++.+|
T Consensus 240 ~I~~~----------------aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~--I~~~aF~~c~~L 299 (329)
T 3sb4_A 240 TIPDF----------------TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA--IEFGAFMGCDNL 299 (329)
T ss_dssp EECTT----------------TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE--ECTTTTTTCTTE
T ss_pred eecHh----------------hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE--EchhhhhCCccC
Confidence 44432 4678899999999998 6645567899999999 999998 6663 345789999999
Q ss_pred CEEEccCCccccccCccccCCCCCccccc
Q 041723 182 TALVLSSNKLSLLAGTTVNTNLPNFTIIG 210 (228)
Q Consensus 182 ~~L~L~~n~l~~~~~~~~~~~l~~L~~l~ 210 (228)
+.+++++|.++...... |.++++|+.++
T Consensus 300 ~~l~l~~n~i~~I~~~a-F~~~~~L~~ly 327 (329)
T 3sb4_A 300 RYVLATGDKITTLGDEL-FGNGVPSKLIY 327 (329)
T ss_dssp EEEEECSSCCCEECTTT-TCTTCCCCEEE
T ss_pred CEEEeCCCccCccchhh-hcCCcchhhhc
Confidence 99999999999888888 99999999876
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=1.8e-12 Score=95.93 Aligned_cols=103 Identities=27% Similarity=0.276 Sum_probs=58.2
Q ss_pred CCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCC-c-cccCCCCCcEEEeeCCcCCCCCCChhhcccccccccc
Q 041723 42 LKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFL-P-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTG 119 (228)
Q Consensus 42 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~-p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~ 119 (228)
.+++++++|.++. +|..+ .+++++|+ +++|.+..+ | .+..+++|++|++++|+++ .+|..
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~--L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~------------ 72 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLY--LYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAG------------ 72 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEE--CCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTT------------
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEE--cCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChh------------
Confidence 4566676666654 33333 25556666 666666444 3 4566666666666666665 33322
Q ss_pred ccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccc
Q 041723 120 EILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLS 166 (228)
Q Consensus 120 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 166 (228)
.+..+++|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 73 ----~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 73 ----VFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp ----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ----hccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 1345556666666666666433334566666666666666655
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=2.6e-12 Score=105.50 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=87.2
Q ss_pred cEEEeeCC-cCCCCCCChhhccccccccccccchhhhcCCCCCEEeccC-CcccccCccccccCCCCCEEEccCCccccC
Q 041723 91 NDLYLFGN-DFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAE-NQLEGSVPSSIFELRNLRALDLSDNNLSGT 168 (228)
Q Consensus 91 ~~L~l~~n-~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 168 (228)
..++.+++ +++ .+| . +..+++|+.|++++ |.+.+..+..|..+++|+.|++++|.+++
T Consensus 11 ~~v~~~~~n~l~-~ip-----------------~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~- 70 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLH-----------------H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF- 70 (347)
T ss_dssp SCEECCSSCCCT-TTT-----------------T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-
T ss_pred CEEEcCCCCCCC-ccC-----------------C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-
Confidence 34677776 676 455 3 45678899999996 99996666789999999999999999997
Q ss_pred CCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccccCccccccCC
Q 041723 169 GDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLASSHIFCTTKI 227 (228)
Q Consensus 169 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~ 227 (228)
..|..|.++++|+.|+|++|++++.++.. +..++ |+.|++++| ++.|+|++
T Consensus 71 -~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~~~-L~~l~l~~N-----~~~c~c~l 121 (347)
T 2ifg_A 71 -VAPDAFHFTPRLSRLNLSFNALESLSWKT-VQGLS-LQELVLSGN-----PLHCSCAL 121 (347)
T ss_dssp -ECTTGGGSCSCCCEEECCSSCCSCCCSTT-TCSCC-CCEEECCSS-----CCCCCGGG
T ss_pred -eCHHHhcCCcCCCEEeCCCCccceeCHHH-cccCC-ceEEEeeCC-----CccCCCcc
Confidence 66778899999999999999999877766 66666 999995555 55666653
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=3.7e-12 Score=94.70 Aligned_cols=103 Identities=25% Similarity=0.360 Sum_probs=69.8
Q ss_pred CeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCC-c-cccCCCCCcEEEeeCCcCCCCCCChhhccccccccccc
Q 041723 43 KVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFL-P-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGE 120 (228)
Q Consensus 43 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~-p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~ 120 (228)
+.++++++.+.. +|..+. ++|++|+ +++|.+..+ | .+..+++|+.|++++|.++ .+|..
T Consensus 15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~--Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~------------- 75 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIP--TDKQRLW--LNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTG------------- 75 (174)
T ss_dssp SEEECCSSCCSS-CCSCCC--TTCSEEE--CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTT-------------
T ss_pred cEEEeCCCCCCc-cCCCcC--CCCcEEE--eCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChh-------------
Confidence 677888777754 454442 6677777 778877555 3 6777777888888877777 34432
Q ss_pred cchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCcccc
Q 041723 121 ILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSG 167 (228)
Q Consensus 121 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 167 (228)
.+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 76 ---~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 76 ---VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp ---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ---HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 13566777788888887774333447777778888888777763
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=8.3e-15 Score=121.81 Aligned_cols=168 Identities=20% Similarity=0.179 Sum_probs=88.5
Q ss_pred cCCCCeeecCCccCCCCcchhccCC-----cchHHHHHhhhhcCCCC--Cc-cccCCCCCcEEEeeCCcCCCCCCChhhc
Q 041723 39 LANLKVLHLGQVNTASTVPYASANL-----SSLFSLLSLIAYCKENF--LP-SLGNLTKLNDLYLFGNDFSGKVPDSLGD 110 (228)
Q Consensus 39 l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~~~l~~~~~~~--~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 110 (228)
.+.|++|++++|.++......+... ++|++|+ +++|.++. +. ....+++|+.|++++|.+++.....++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~--Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~- 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVN--LASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR- 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEE--CTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH-
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEE--ecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH-
Confidence 3467777777776654333333222 4666777 77776632 22 223345677777777766521111111
Q ss_pred cccccccccccchhh-hcCCCCCEEeccCCccccc----CccccccCCCCCEEEccCCccccC--CCcchhhhcCCCCCE
Q 041723 111 LLQLNYLTGEILVEI-RKLTQLHILRLAENQLEGS----VPSSIFELRNLRALDLSDNNLSGT--GDLNMVLLNLESLTA 183 (228)
Q Consensus 111 l~~~~~l~~~~~~~~-~~l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~--~~~p~~~~~l~~L~~ 183 (228)
..+ ...++|++|++++|.+++. ++..+...++|++|++++|.+++. ..++..+...+.|++
T Consensus 148 ------------~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~ 215 (372)
T 3un9_A 148 ------------DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQE 215 (372)
T ss_dssp ------------HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCE
T ss_pred ------------HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCe
Confidence 112 1345667777777766532 223335566677777777766531 112344455566777
Q ss_pred EEccCCccccccCcc---ccCCCCCcccccccccccccCcc
Q 041723 184 LVLSSNKLSLLAGTT---VNTNLPNFTIIGSVHETLASSHI 221 (228)
Q Consensus 184 L~L~~n~l~~~~~~~---~~~~l~~L~~l~l~~n~~~~~~~ 221 (228)
|+|++|.+++..... .+...++|++|++++|.+++...
T Consensus 216 L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~ 256 (372)
T 3un9_A 216 LNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGR 256 (372)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHH
Confidence 777777665432221 02345666777777776665443
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.29 E-value=3.3e-14 Score=124.51 Aligned_cols=90 Identities=13% Similarity=0.134 Sum_probs=41.5
Q ss_pred cCCCCCEEeccCCcccccCc-cccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEcc---------CCccccccC
Q 041723 127 KLTQLHILRLAENQLEGSVP-SSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLS---------SNKLSLLAG 196 (228)
Q Consensus 127 ~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~---------~n~l~~~~~ 196 (228)
.+++|++|++++|.+.+... ..+..+++|+.|++++| +++ ..++.....+++|++|++. .+.+++...
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~-~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED-AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH-HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH-HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 44556666666555442211 12345556666666655 321 0222223345566666652 233333222
Q ss_pred ccccCCCCCccccccccccccc
Q 041723 197 TTVNTNLPNFTIIGSVHETLAS 218 (228)
Q Consensus 197 ~~~~~~l~~L~~l~l~~n~~~~ 218 (228)
......+++|+.|.++.|.+++
T Consensus 365 ~~l~~~~~~L~~L~~~~~~l~~ 386 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYFCRQMTN 386 (594)
T ss_dssp HHHHHHCTTCCEEEEEESCCCH
T ss_pred HHHHHhchhHHHHHHhcCCcCH
Confidence 2212235666666665565554
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.26 E-value=1.7e-13 Score=119.90 Aligned_cols=198 Identities=14% Similarity=0.057 Sum_probs=115.6
Q ss_pred hcccccccccccCCCCh-----HHHHhccCCCCeeecCCccCCCC-cchhccCCcchHHHHHhhhh---------cCCCC
Q 041723 16 YGTASNAMKTLLQSPSL-----ANLAEKLANLKVLHLGQVNTAST-VPYASANLSSLFSLLSLIAY---------CKENF 80 (228)
Q Consensus 16 ~~~l~~l~~l~l~~~~l-----~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~~~l~~---------~~~~~ 80 (228)
+..+++|++|++++|.+ +..+..+++|++|++++| +... ++.....+++|++|+ +.+ +.++.
T Consensus 285 ~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~--L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 285 YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELR--VFPSEPFVMEPNVALTE 361 (594)
T ss_dssp HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEE--EECSCTTCSSCSSCCCH
T ss_pred HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEE--EecCcccccccCCCCCH
Confidence 34567888888888873 334557788888888877 3221 222223466677766 633 22211
Q ss_pred --Cccc-cCCCCCcEEEeeCCcCCCCCCChhh-cccccccc-------------c-----cccchhhhcCCCCCEEeccC
Q 041723 81 --LPSL-GNLTKLNDLYLFGNDFSGKVPDSLG-DLLQLNYL-------------T-----GEILVEIRKLTQLHILRLAE 138 (228)
Q Consensus 81 --~p~~-~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~~~~l-------------~-----~~~~~~~~~l~~L~~L~ls~ 138 (228)
+..+ ..+++|+.|.+..+.+++..+..++ .++++..+ + ..++..+..+++|+.|++++
T Consensus 362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 1122 2356677776666666532222222 12221111 1 11122255677888888876
Q ss_pred CcccccCcccccc-CCCCCEEEccCCccccCCCcchhh-hcCCCCCEEEccCCccccccCccccCCCCCccccccccccc
Q 041723 139 NQLEGSVPSSIFE-LRNLRALDLSDNNLSGTGDLNMVL-LNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETL 216 (228)
Q Consensus 139 n~l~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~ 216 (228)
.+++..+..+.. +++|+.|++++|.+++ ..+..+ .++++|++|++++|++++.........+++|++|++++|++
T Consensus 442 -~l~~~~~~~l~~~~~~L~~L~L~~~~i~~--~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 442 -LLTDKVFEYIGTYAKKMEMLSVAFAGDSD--LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp -SCCHHHHHHHHHHCTTCCEEEEESCCSSH--HHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred -cccHHHHHHHHHhchhccEeeccCCCCcH--HHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 555444444444 7888888888888765 333333 66788888888888886544432245678888888888877
Q ss_pred ccC
Q 041723 217 ASS 219 (228)
Q Consensus 217 ~~~ 219 (228)
+..
T Consensus 519 ~~~ 521 (594)
T 2p1m_B 519 SFG 521 (594)
T ss_dssp BHH
T ss_pred CHH
Confidence 543
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=7.9e-13 Score=109.88 Aligned_cols=164 Identities=16% Similarity=0.086 Sum_probs=118.6
Q ss_pred ccccccccCCCChHH----HHhc-----cCCCCeeecCCccCCCCcchhc-cCCcchHHHHHhhhhcCCCCCc--cc---
Q 041723 20 SNAMKTLLQSPSLAN----LAEK-----LANLKVLHLGQVNTASTVPYAS-ANLSSLFSLLSLIAYCKENFLP--SL--- 84 (228)
Q Consensus 20 ~~l~~l~l~~~~l~~----~~~~-----l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~~~l~~~~~~~~p--~~--- 84 (228)
++++++++++|.+.+ .+.. ..+|++|++++|.+.......+ ..+++|++|+ +++|.++... .+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~--Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLG--LQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEE--CCSSCCCHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhh--cCCCCCCHHHHHHHHHH
Confidence 578899999998532 2222 2699999999999875433333 3467889999 9999994333 32
Q ss_pred --cCCCCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccC----ccccccCCCCCEE
Q 041723 85 --GNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSV----PSSIFELRNLRAL 158 (228)
Q Consensus 85 --~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L 158 (228)
...++|++|++++|.++.. +. ..++..+..+++|++|++++|.+.+.. +..+...++|+.|
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~---~~----------~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L 216 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAA---GV----------AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQEL 216 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHH---HH----------HHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEE
T ss_pred HHhcCCccceeeCCCCCCChH---HH----------HHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeE
Confidence 3468899999999988621 11 123344567889999999999987532 4556778899999
Q ss_pred EccCCccccC--CCcchhhhcCCCCCEEEccCCccccccCcc
Q 041723 159 DLSDNNLSGT--GDLNMVLLNLESLTALVLSSNKLSLLAGTT 198 (228)
Q Consensus 159 ~l~~n~~~~~--~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 198 (228)
++++|.+++. ..+...+...+.|++|+|++|.+++.....
T Consensus 217 ~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 258 (372)
T 3un9_A 217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQV 258 (372)
T ss_dssp ECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHH
Confidence 9999999851 123445667789999999999998654443
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.09 E-value=2.1e-10 Score=96.22 Aligned_cols=198 Identities=12% Similarity=0.080 Sum_probs=132.9
Q ss_pred cccccchhhhcccccccccccCCCC--hH-HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc-
Q 041723 7 RKKKIATAAYGTASNAMKTLLQSPS--LA-NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP- 82 (228)
Q Consensus 7 ~~~~~~~~~~~~l~~l~~l~l~~~~--l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p- 82 (228)
.++.+...+|.+. +|+.+.+...- ++ .+|..+.+|+.+++.+|.++.....+|. ..+|+.+. +..+ +..++
T Consensus 145 ~i~~I~~~aF~~~-~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~--lp~~-l~~I~~ 219 (401)
T 4fdw_A 145 GLKSIGDMAFFNS-TVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVL--LPVT-LKEIGS 219 (401)
T ss_dssp TCCEECTTTTTTC-CCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEE--CCTT-CCEECT
T ss_pred CccEECHHhcCCC-CceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEE--eCCc-hheehh
Confidence 3667777778774 68888887643 33 5788889999999988887765556665 57788777 7633 65665
Q ss_pred -cccCCCCCcEEEeeCCcCCCCCC-Chhhccccc------cccccccchhhhcCCCCCEEeccCCccc-----ccCcccc
Q 041723 83 -SLGNLTKLNDLYLFGNDFSGKVP-DSLGDLLQL------NYLTGEILVEIRKLTQLHILRLAENQLE-----GSVPSSI 149 (228)
Q Consensus 83 -~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~~------~~l~~~~~~~~~~l~~L~~L~ls~n~l~-----~~~~~~~ 149 (228)
.|.++++|+.+++..+ ++ .++ ..|.. ..+ +.+...-...|..+++|+.+.+.++.+. ...+..|
T Consensus 220 ~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF 296 (401)
T 4fdw_A 220 QAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL 296 (401)
T ss_dssp TTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT
T ss_pred hHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh
Confidence 7788888888888764 33 222 22222 221 1222223445677888888888877654 2334667
Q ss_pred ccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccccc
Q 041723 150 FELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLAS 218 (228)
Q Consensus 150 ~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~ 218 (228)
..+++|+.+.+.+ .++. .-...|.++.+|+.+.+..+ ++...... |.++ +|+.+.++.|.+..
T Consensus 297 ~~c~~L~~l~l~~-~i~~--I~~~aF~~c~~L~~l~lp~~-l~~I~~~a-F~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 297 EGCPKLARFEIPE-SIRI--LGQGLLGGNRKVTQLTIPAN-VTQINFSA-FNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp TTCTTCCEECCCT-TCCE--ECTTTTTTCCSCCEEEECTT-CCEECTTS-SSSS-CCCEEEECCSSCCB
T ss_pred hCCccCCeEEeCC-ceEE--EhhhhhcCCCCccEEEECcc-ccEEcHHh-CCCC-CCCEEEEcCCCCcc
Confidence 8888888888884 3553 33456778888888888555 65555666 7788 88888888777654
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.09 E-value=3.9e-10 Score=92.41 Aligned_cols=103 Identities=24% Similarity=0.200 Sum_probs=77.8
Q ss_pred CeeecCCc-cCCCCcchhccCCcchHHHHHhhhh-cCCCCCc--cccCCCCCcEEEeeCCcCCCCCCChhhccccccccc
Q 041723 43 KVLHLGQV-NTASTVPYASANLSSLFSLLSLIAY-CKENFLP--SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT 118 (228)
Q Consensus 43 ~~L~l~~n-~~~~~~~~~~~~l~~L~~L~~~l~~-~~~~~~p--~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~ 118 (228)
..++.+++ .++. +|. +..+++|+.|+ +++ |.+..+| .|.++++|+.|++++|.+++..|.
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~--l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~------------ 74 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELY--IENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD------------ 74 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEE--CCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT------------
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEE--ccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH------------
Confidence 35688777 7765 666 88888899988 985 8887666 688899999999999988843333
Q ss_pred cccchhhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCcccc
Q 041723 119 GEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSG 167 (228)
Q Consensus 119 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 167 (228)
.|..+++|+.|++++|.+++..+..+..+. |+.|++.+|.+.-
T Consensus 75 -----~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 75 -----AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp -----GGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred -----HhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 356778899999999998854334444444 8999999988874
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=2.2e-09 Score=89.94 Aligned_cols=198 Identities=11% Similarity=0.070 Sum_probs=137.6
Q ss_pred CcccccchhhhcccccccccccCCCC--hH-HHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCCCCc
Q 041723 6 TRKKKIATAAYGTASNAMKTLLQSPS--LA-NLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKENFLP 82 (228)
Q Consensus 6 ~~~~~~~~~~~~~l~~l~~l~l~~~~--l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p 82 (228)
+.++.+...+|.+. +|+.+.+..+- ++ .+|..+ .|+.+++.+ .+......+|.++.+|+.++ +..|.+..++
T Consensus 122 ~~i~~I~~~aF~~~-~L~~i~l~~~i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~--l~~n~l~~I~ 196 (401)
T 4fdw_A 122 NSVKSIPKDAFRNS-QIAKVVLNEGLKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD--LSKTKITKLP 196 (401)
T ss_dssp TTCCEECTTTTTTC-CCSEEECCTTCCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE--CTTSCCSEEC
T ss_pred CccCEehHhhcccC-CccEEEeCCCccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee--cCCCcceEec
Confidence 45677778888875 78888887764 43 356664 699999986 56666678899999999999 9999998887
Q ss_pred --cccCCCCCcEEEeeCCcCCCCCCChhhccccccccc-----cccc-hhhhcCCCCCEEeccCCcccccCccccccCCC
Q 041723 83 --SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNYLT-----GEIL-VEIRKLTQLHILRLAENQLEGSVPSSIFELRN 154 (228)
Q Consensus 83 --~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~-----~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~ 154 (228)
.|. ..+|+.+.+..+ ++..-...|..++.+..+. ..++ ..|.. .+|+.+.+. +.+.......|..+.+
T Consensus 197 ~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~ 272 (401)
T 4fdw_A 197 ASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPE 272 (401)
T ss_dssp TTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTT
T ss_pred hhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCC
Confidence 554 688999998754 5422334454444433331 1122 23333 678888884 4455344677889999
Q ss_pred CCEEEccCCccccC--C-CcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccc
Q 041723 155 LRALDLSDNNLSGT--G-DLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHE 214 (228)
Q Consensus 155 L~~L~l~~n~~~~~--~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n 214 (228)
|+.+.+.++.+... . .-+..|.++.+|+.+.+.. .++...... |.+|.+|+.+.+..+
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~a-F~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGL-LGGNRKVTQLTIPAN 333 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTT-TTTCCSCCEEEECTT
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhh-hcCCCCccEEEECcc
Confidence 99999988776410 0 2345788899999999984 477666667 889999999988544
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=8.3e-10 Score=91.22 Aligned_cols=164 Identities=16% Similarity=0.146 Sum_probs=78.0
Q ss_pred HhccCCCCeeecCCccCC---------CCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCC
Q 041723 36 AEKLANLKVLHLGQVNTA---------STVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPD 106 (228)
Q Consensus 36 ~~~l~~L~~L~l~~n~~~---------~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~ 106 (228)
...+++|+.|.+.+.... +.+...+..+|+|+.|. +++|.-..++.+ .+++|+.|++..+.+.. .
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~--L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~---~ 208 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLK--IKGTNNLSIGKK-PRPNLKSLEIISGGLPD---S 208 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEE--EECCBTCBCCSC-BCTTCSEEEEECSBCCH---H
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEE--EeCCCCceeccc-cCCCCcEEEEecCCCCh---H
Confidence 445667777776544221 12334445566677766 666532223333 25667777776665541 1
Q ss_pred hhhccccccccccccchhhhcCCCCCEEeccC--Cccccc-----Ccccc--ccCCCCCEEEccCCccccCCCcchhhh-
Q 041723 107 SLGDLLQLNYLTGEILVEIRKLTQLHILRLAE--NQLEGS-----VPSSI--FELRNLRALDLSDNNLSGTGDLNMVLL- 176 (228)
Q Consensus 107 ~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~--n~l~~~-----~~~~~--~~l~~L~~L~l~~n~~~~~~~~p~~~~- 176 (228)
.+..+ ....+++|++|+++. +...+. +...+ ..+++|+.|++.+|.+++ ..+..+.
T Consensus 209 ~l~~l------------~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~--~~~~~la~ 274 (362)
T 2ra8_A 209 VVEDI------------LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN--VVVEMFLE 274 (362)
T ss_dssp HHHHH------------HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH--HHHHHHHH
T ss_pred HHHHH------------HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch--HHHHHHHh
Confidence 11000 011455666666542 111100 00111 235666666666666553 2222221
Q ss_pred --cCCCCCEEEccCCccccccCccc---cCCCCCcccccccccccccC
Q 041723 177 --NLESLTALVLSSNKLSLLAGTTV---NTNLPNFTIIGSVHETLASS 219 (228)
Q Consensus 177 --~l~~L~~L~L~~n~l~~~~~~~~---~~~l~~L~~l~l~~n~~~~~ 219 (228)
.++.|++|+|+.|.+.+..+..+ +.++++|+.|++++|.+++.
T Consensus 275 a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 275 SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 34566666666666654322110 23456666666666666543
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.68 E-value=5.4e-09 Score=86.32 Aligned_cols=181 Identities=16% Similarity=0.123 Sum_probs=116.8
Q ss_pred hcccccccccccCCC-------------ChHHHHhccCCCCeeecCCccCCCCcchhccCCcchHHHHHhhhhcCCC--C
Q 041723 16 YGTASNAMKTLLQSP-------------SLANLAEKLANLKVLHLGQVNTASTVPYASANLSSLFSLLSLIAYCKEN--F 80 (228)
Q Consensus 16 ~~~l~~l~~l~l~~~-------------~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~~~l~~~~~~--~ 80 (228)
...+++|+.|.+.+. .++..+..+++|+.|++++|.-. .++. + .+++|++|. +..|.+. .
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~--L~~~~l~~~~ 209 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLE--IISGGLPDSV 209 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEE--EECSBCCHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEE--EecCCCChHH
Confidence 445667877777543 25567788999999999887321 2233 3 378999999 9888873 2
Q ss_pred Cccc--cCCCCCcEEEeeCC--cCCCCC-CChhhccccccccccccchhhhcCCCCCEEeccCCcccccCcccc---ccC
Q 041723 81 LPSL--GNLTKLNDLYLFGN--DFSGKV-PDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSVPSSI---FEL 152 (228)
Q Consensus 81 ~p~~--~~l~~L~~L~l~~n--~l~~~~-p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~---~~l 152 (228)
+..+ ..+++|+.|+++.+ ...+.. ...+..+ + ....+++|+.|++.+|.+.+..+..+ ..+
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~---------l--~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~ 278 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL---------F--SKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG---------S--CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSG
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHH---------H--hcCCCCCcCEEeCCCCCCchHHHHHHHhCccC
Confidence 2233 37899999998642 221111 1111110 0 01357899999999999875443333 357
Q ss_pred CCCCEEEccCCccccC--CCcchhhhcCCCCCEEEccCCccccccCccccCC-CCCcccccccccc
Q 041723 153 RNLRALDLSDNNLSGT--GDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTN-LPNFTIIGSVHET 215 (228)
Q Consensus 153 ~~L~~L~l~~n~~~~~--~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-l~~L~~l~l~~n~ 215 (228)
++|+.|+++.|.+++. ..++..+..+++|+.|++++|.++...... +.. + -..++++++.
T Consensus 279 ~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~-l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE-LQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp GGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH-HHHHC--CSEEECCSBC
T ss_pred CCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH-HHHHc--CCEEEecCCc
Confidence 8999999999998851 013334456789999999999987654443 322 2 3457777766
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=5.2e-09 Score=78.32 Aligned_cols=124 Identities=15% Similarity=0.121 Sum_probs=77.7
Q ss_pred ccCCCCCcEEEeeCC-cCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCcccccC----ccccccCCCCCEE
Q 041723 84 LGNLTKLNDLYLFGN-DFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQLEGSV----PSSIFELRNLRAL 158 (228)
Q Consensus 84 ~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L 158 (228)
+...+.|++|++++| .+.. .++. .+...+...++|++|++++|.+.... ...+...++|++|
T Consensus 32 l~~~~~L~~L~L~~n~~i~~---~g~~----------~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L 98 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPV---PTLK----------ACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSL 98 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCH---HHHH----------HHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred HhcCCCCCEEEecCCCCCCH---HHHH----------HHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEE
Confidence 445677888888877 6651 1111 12233455677888888888876432 2334556778888
Q ss_pred EccCCccccC--CCcchhhhcCCCCCEEEc--cCCccccccCcc---ccCCCCCcccccccccccccCc
Q 041723 159 DLSDNNLSGT--GDLNMVLLNLESLTALVL--SSNKLSLLAGTT---VNTNLPNFTIIGSVHETLASSH 220 (228)
Q Consensus 159 ~l~~n~~~~~--~~~p~~~~~l~~L~~L~L--~~n~l~~~~~~~---~~~~l~~L~~l~l~~n~~~~~~ 220 (228)
++++|.+++. ..+...+.....|++|+| ++|.+....... .+...+.|++|++++|.+++..
T Consensus 99 ~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 99 NVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp ECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred ECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 8888887741 123445566677888888 778886543221 1445577888888888876543
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.48 E-value=9.6e-08 Score=71.35 Aligned_cols=129 Identities=13% Similarity=0.140 Sum_probs=80.1
Q ss_pred hHHHHhccCCCCeeecCCc-cCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhc
Q 041723 32 LANLAEKLANLKVLHLGQV-NTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGD 110 (228)
Q Consensus 32 l~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 110 (228)
+...+...+.|++|++++| .+..... +.+. ..+...++|++|++++|.+.. .+..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~---------~~l~-----------~~L~~~~~L~~L~Ls~n~i~~---~g~~- 83 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTL---------KACA-----------EALKTNTYVKKFSIVGTRSND---PVAF- 83 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHH---------HHHH-----------HHHTTCCSCCEEECTTSCCCH---HHHH-
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHH---------HHHH-----------HHHHhCCCcCEEECcCCCCCh---HHHH-
Confidence 3445667788888888887 6653211 1111 123345678888888887752 1111
Q ss_pred cccccccccccchhhhcCCCCCEEeccCCccccc----CccccccCCCCCEEEc--cCCccccC--CCcchhhhcCCCCC
Q 041723 111 LLQLNYLTGEILVEIRKLTQLHILRLAENQLEGS----VPSSIFELRNLRALDL--SDNNLSGT--GDLNMVLLNLESLT 182 (228)
Q Consensus 111 l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~l--~~n~~~~~--~~~p~~~~~l~~L~ 182 (228)
.+...+...++|++|++++|.+.+. +...+...++|+.|++ ++|.+++. ..+...+...+.|+
T Consensus 84 ---------~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~ 154 (185)
T 1io0_A 84 ---------ALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLL 154 (185)
T ss_dssp ---------HHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCC
T ss_pred ---------HHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcC
Confidence 1223445667788888888887643 2345566778888888 77887741 11334555667888
Q ss_pred EEEccCCcccc
Q 041723 183 ALVLSSNKLSL 193 (228)
Q Consensus 183 ~L~L~~n~l~~ 193 (228)
+|++++|.+..
T Consensus 155 ~L~L~~n~i~~ 165 (185)
T 1io0_A 155 KFGYHFTQQGP 165 (185)
T ss_dssp EEECCCSSHHH
T ss_pred EEeccCCCCCh
Confidence 88888887753
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=2.3e-07 Score=73.19 Aligned_cols=83 Identities=25% Similarity=0.352 Sum_probs=63.9
Q ss_pred hcCCCCCEEeccCCcccc--cCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCc------
Q 041723 126 RKLTQLHILRLAENQLEG--SVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGT------ 197 (228)
Q Consensus 126 ~~l~~L~~L~ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~------ 197 (228)
..+++|+.|++++|.+++ .+|..+..+++|+.|++++|.++++..+ ..+..+ +|++|+|++|++.+..+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l-~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL-DKIKGL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGG-GGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhh-hhcccC-CcceEEccCCcCccccCcchhHHH
Confidence 467899999999999986 3446677999999999999999863222 223344 899999999999875542
Q ss_pred cccCCCCCccccc
Q 041723 198 TVNTNLPNFTIIG 210 (228)
Q Consensus 198 ~~~~~l~~L~~l~ 210 (228)
..+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 1256789999887
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.30 E-value=2.2e-06 Score=71.39 Aligned_cols=85 Identities=11% Similarity=0.046 Sum_probs=62.0
Q ss_pred hhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCC
Q 041723 124 EIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL 203 (228)
Q Consensus 124 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 203 (228)
.+..+.+|+.+.+..+ +......+|..+.+|+.+++..+ ++. .-...|.++.+|+.+.+..+ ++...... |.+|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~--I~~~aF~~c~~L~~i~lp~~-l~~I~~~a-F~~C 365 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEE--IGKRSFRGCTSLSNINFPLS-LRKIGANA-FQGC 365 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCE--ECTTTTTTCTTCCEECCCTT-CCEECTTT-BTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccE--EhHHhccCCCCCCEEEECcc-ccEehHHH-hhCC
Confidence 3556778888887654 44234567888999999998754 442 23457888999999999776 66666667 8899
Q ss_pred CCccccccccc
Q 041723 204 PNFTIIGSVHE 214 (228)
Q Consensus 204 ~~L~~l~l~~n 214 (228)
++|+.+.+..+
T Consensus 366 ~~L~~i~lp~~ 376 (394)
T 4fs7_A 366 INLKKVELPKR 376 (394)
T ss_dssp TTCCEEEEEGG
T ss_pred CCCCEEEECCC
Confidence 99999987654
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.28 E-value=2.6e-07 Score=72.91 Aligned_cols=108 Identities=17% Similarity=0.157 Sum_probs=76.2
Q ss_pred hcccccccc--cccCCCC---hHH----HHhccCCCCeeecCCccCCCC--cchhccCCcchHHHHHhhhhcCCCCCccc
Q 041723 16 YGTASNAMK--TLLQSPS---LAN----LAEKLANLKVLHLGQVNTAST--VPYASANLSSLFSLLSLIAYCKENFLPSL 84 (228)
Q Consensus 16 ~~~l~~l~~--l~l~~~~---l~~----~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~~~l~~~~~~~~p~~ 84 (228)
+...+.|.. +++..|. ++. ...++++|+.|++++|.+.+. ++..+..+++|+.|+ +++|.+..+..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~--Ls~N~i~~~~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN--LSGNELKSEREL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEE--CTTSCCCSGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEE--CCCCccCCchhh
Confidence 444555655 6667774 333 235689999999999999883 457778999999999 999999766544
Q ss_pred cCCC--CCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEe
Q 041723 85 GNLT--KLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILR 135 (228)
Q Consensus 85 ~~l~--~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ 135 (228)
..+. +|++|++.+|.+++.+|..-. -....+..+++|+.||
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~----------y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQST----------YISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHH----------HHHHHHHHCTTCCEES
T ss_pred hhcccCCcceEEccCCcCccccCcchh----------HHHHHHHHCcccCeEC
Confidence 4444 899999999999866653210 0012345677787765
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.16 E-value=4.9e-07 Score=66.70 Aligned_cols=87 Identities=8% Similarity=0.030 Sum_probs=67.1
Q ss_pred CCCCEEeccCCcccccCccccccCCCCCEEEccCCc-cccCCCcchhhhcC----CCCCEEEccCCc-cccccCccccCC
Q 041723 129 TQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNN-LSGTGDLNMVLLNL----ESLTALVLSSNK-LSLLAGTTVNTN 202 (228)
Q Consensus 129 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~~ 202 (228)
..|++|+++++.++...-..+..+++|+.|++++|. +++ .--..+..+ ++|++|++++|. +++..... +.+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD--~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED--GCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA-LHH 137 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH--HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-GGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH--HHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-Hhc
Confidence 368999999999887666678899999999999995 765 333445443 479999999985 87766666 778
Q ss_pred CCCcccccccccc-ccc
Q 041723 203 LPNFTIIGSVHET-LAS 218 (228)
Q Consensus 203 l~~L~~l~l~~n~-~~~ 218 (228)
+++|+.|++++.. +++
T Consensus 138 ~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CTTCCEEEEESCTTCCC
T ss_pred CCCCCEEECCCCCCCCc
Confidence 9999999988764 443
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=7.7e-06 Score=60.25 Aligned_cols=84 Identities=13% Similarity=0.200 Sum_probs=58.3
Q ss_pred CCCcEEEeeCCcCCCCCCChhhccccccccccccchhhhcCCCCCEEeccCCc-ccccCccccccC----CCCCEEEccC
Q 041723 88 TKLNDLYLFGNDFSGKVPDSLGDLLQLNYLTGEILVEIRKLTQLHILRLAENQ-LEGSVPSSIFEL----RNLRALDLSD 162 (228)
Q Consensus 88 ~~L~~L~l~~n~l~~~~p~~~~~l~~~~~l~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~l----~~L~~L~l~~ 162 (228)
..|+.||+++|.++. .++. .+..+++|++|++++|. +++..-..+..+ ++|++|++++
T Consensus 61 ~~L~~LDLs~~~Itd---~GL~--------------~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~ 123 (176)
T 3e4g_A 61 YKIQAIDATDSCIMS---IGFD--------------HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIIS 123 (176)
T ss_dssp CCEEEEEEESCCCCG---GGGG--------------GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEES
T ss_pred ceEeEEeCcCCCccH---HHHH--------------HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCC
Confidence 458888888887652 2221 24577888999998885 664444445553 4788999988
Q ss_pred Cc-cccCCCcchhhhcCCCCCEEEccCCc
Q 041723 163 NN-LSGTGDLNMVLLNLESLTALVLSSNK 190 (228)
Q Consensus 163 n~-~~~~~~~p~~~~~l~~L~~L~L~~n~ 190 (228)
|. +|+ .--..+.++++|++|++++++
T Consensus 124 C~~ITD--~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 124 CGNVTD--KGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp CTTCCH--HHHHHGGGCTTCCEEEEESCT
T ss_pred CCcCCH--HHHHHHhcCCCCCEEECCCCC
Confidence 85 775 444556778889999998875
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.96 E-value=3.5e-05 Score=64.02 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=44.0
Q ss_pred cccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccccccccccc
Q 041723 147 SSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETLA 217 (228)
Q Consensus 147 ~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~ 217 (228)
..|..+.+|+.+.+..+ ++. .-...|.++.+|+.+.+..+ ++...... |.+|.+|+.+.+..+...
T Consensus 305 ~aF~~c~~L~~i~lp~~-v~~--I~~~aF~~C~~L~~i~ip~s-v~~I~~~a-F~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 305 SVFAGCISLKSIDIPEG-ITQ--ILDDAFAGCEQLERIAIPSS-VTKIPESA-FSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCE--ECTTTTTTCTTCCEEEECTT-CCBCCGGG-GTTCTTCCEEEESSCHHH
T ss_pred eeecCCCCcCEEEeCCc-ccE--ehHhHhhCCCCCCEEEECcc-cCEEhHhH-hhCCCCCCEEEECCceee
Confidence 45666777777777654 332 22346777888888888554 55555566 888888888887776544
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.87 E-value=3.6e-05 Score=63.94 Aligned_cols=191 Identities=10% Similarity=-0.049 Sum_probs=106.4
Q ss_pred cccccchhhhcccccccccccCCCC--h-HHHHhccCCCCeeecCCccCC-C--------------------CcchhccC
Q 041723 7 RKKKIATAAYGTASNAMKTLLQSPS--L-ANLAEKLANLKVLHLGQVNTA-S--------------------TVPYASAN 62 (228)
Q Consensus 7 ~~~~~~~~~~~~l~~l~~l~l~~~~--l-~~~~~~l~~L~~L~l~~n~~~-~--------------------~~~~~~~~ 62 (228)
....+...+|.++.+|+.+.+..+- + ..++..+..|+.+++..+... + ....++..
T Consensus 172 ~~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~ 251 (394)
T 4fs7_A 172 SMETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYG 251 (394)
T ss_dssp TCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTT
T ss_pred ccceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCceecccccccc
Confidence 3455677788888888888887663 3 346667777777766543211 0 11122223
Q ss_pred CcchHHHHHhhhhcCCCCCc-cccCCCCCcEEEeeCCcCCCCCCChhhcccccc------ccccccchhhhcCCCCCEEe
Q 041723 63 LSSLFSLLSLIAYCKENFLP-SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLN------YLTGEILVEIRKLTQLHILR 135 (228)
Q Consensus 63 l~~L~~L~~~l~~~~~~~~p-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~------~l~~~~~~~~~~l~~L~~L~ 135 (228)
+..++.+. +..+...--. .+..+..++.+......+.. ..+.....+. .+...-...+..+.+|+.++
T Consensus 252 ~~~l~~~~--~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~---~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~ 326 (394)
T 4fs7_A 252 CTDLESIS--IQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE---KTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSID 326 (394)
T ss_dssp CSSCCEEE--ECCTTCEECSCTTTTCTTCCEEEECSSEECT---TTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEEC
T ss_pred cccceeEE--cCCCcceeeccccccccccceeccCceeecc---ccccccccccccccccccceechhhhcCCCCCCEEE
Confidence 33333333 3222211111 33344444444443322210 1111111111 11222234567889999999
Q ss_pred ccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCcccc
Q 041723 136 LAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTII 209 (228)
Q Consensus 136 ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l 209 (228)
+..+ +......+|.++.+|+.+++..+ ++. .-...|.++.+|+.+++..+- +.. ... +.++++|+.+
T Consensus 327 lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~--I~~~aF~~C~~L~~i~lp~~~-~~~-~~~-F~~c~~L~~I 393 (394)
T 4fs7_A 327 LPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK--IGANAFQGCINLKKVELPKRL-EQY-RYD-FEDTTKFKWI 393 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEECCCTT-CCE--ECTTTBTTCTTCCEEEEEGGG-GGG-GGG-BCTTCEEEEE
T ss_pred eCCc-ccEEhHHhccCCCCCCEEEECcc-ccE--ehHHHhhCCCCCCEEEECCCC-EEh-hhe-ecCCCCCcEE
Confidence 9754 55344578899999999999876 553 335678999999999997653 222 345 7788887754
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.78 E-value=2.5e-05 Score=54.66 Aligned_cols=57 Identities=23% Similarity=0.227 Sum_probs=33.6
Q ss_pred CEEeccCCccc-ccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccc
Q 041723 132 HILRLAENQLE-GSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLS 192 (228)
Q Consensus 132 ~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~ 192 (228)
..++.+++.++ ..+|.. -..+|+.|+|++|.++. .-+..|..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTA--LPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSS--CCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCc--cChhhhhhccccCEEEecCCCee
Confidence 35666666664 234533 23357777777777763 22344566667777777777664
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.50 E-value=0.00021 Score=59.31 Aligned_cols=125 Identities=8% Similarity=0.055 Sum_probs=74.5
Q ss_pred cccCCCCCcEEEeeCCcCCCCCCChhhccccccc------cccccchhhhcCCCCCEEeccCCcccccCccccccCCCCC
Q 041723 83 SLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQLNY------LTGEILVEIRKLTQLHILRLAENQLEGSVPSSIFELRNLR 156 (228)
Q Consensus 83 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~------l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 156 (228)
.|.++..|+.+.+..+... .-...+.....+.. +...-...|..+.+|+.+.+..+ ++.....+|.++.+|+
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 4566778888887654322 22223333332222 22222345677899999999764 4434456799999999
Q ss_pred EEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCCCCccccccccccc
Q 041723 157 ALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNLPNFTIIGSVHETL 216 (228)
Q Consensus 157 ~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~ 216 (228)
.+.+..+ ++. .-...|.++.+|+.+++.++.... .. +..+..|+.+.+..+.+
T Consensus 338 ~i~ip~s-v~~--I~~~aF~~C~~L~~i~~~~~~~~~---~~-~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 338 RIAIPSS-VTK--IPESAFSNCTALNNIEYSGSRSQW---NA-ISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EEEECTT-CCB--CCGGGGTTCTTCCEEEESSCHHHH---HT-CBCCCCC----------
T ss_pred EEEECcc-cCE--EhHhHhhCCCCCCEEEECCceeeh---hh-hhccCCCCEEEeCCCCE
Confidence 9999765 442 335679999999999999886542 23 55677888887665543
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.39 E-value=0.00033 Score=57.66 Aligned_cols=74 Identities=12% Similarity=0.183 Sum_probs=35.3
Q ss_pred hhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCC
Q 041723 125 IRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL 203 (228)
Q Consensus 125 ~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 203 (228)
+..+++|+.+.+.++.+.......|..+.+|+.+.+..+ ++. .-..+|.++.+|+.+.+..+ ++...... |.++
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~--I~~~aF~~C~~L~~i~ip~~-v~~I~~~a-F~~c 355 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKT--IQVYAFKNCKALSTISYPKS-ITLIESGA-FEGS 355 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCE--ECTTTTTTCTTCCCCCCCTT-CCEECTTT-TTTS
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccE--EHHHHhhCCCCCCEEEECCc-cCEEchhH-hhCC
Confidence 344555666655555554223345555566666665443 221 11234555555665555433 33333333 4444
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.34 E-value=0.00054 Score=56.34 Aligned_cols=86 Identities=13% Similarity=0.106 Sum_probs=65.3
Q ss_pred hhhcCCCCCEEeccCCcccccCccccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEccCCccccccCccccCCC
Q 041723 124 EIRKLTQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLSSNKLSLLAGTTVNTNL 203 (228)
Q Consensus 124 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 203 (228)
.+..+.+|+.+.+..+ +.......|..+.+|+.+.+.++.++. .-...|.++.+|+.+.+..+ ++...... |.+|
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~--I~~~aF~~c~~L~~i~lp~~-l~~I~~~a-F~~C 332 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIET--LEPRVFMDCVKLSSVTLPTA-LKTIQVYA-FKNC 332 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCE--ECTTTTTTCTTCCEEECCTT-CCEECTTT-TTTC
T ss_pred ccceeehhcccccccc-ceeccccccccccccccccccccccce--ehhhhhcCCCCCCEEEcCcc-ccEEHHHH-hhCC
Confidence 4566778888888654 432334678899999999999888774 33567889999999999755 66565667 8999
Q ss_pred CCccccccccc
Q 041723 204 PNFTIIGSVHE 214 (228)
Q Consensus 204 ~~L~~l~l~~n 214 (228)
.+|+.+.+..+
T Consensus 333 ~~L~~i~ip~~ 343 (379)
T 4h09_A 333 KALSTISYPKS 343 (379)
T ss_dssp TTCCCCCCCTT
T ss_pred CCCCEEEECCc
Confidence 99999988543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.47 E-value=0.00058 Score=51.13 Aligned_cols=124 Identities=17% Similarity=0.214 Sum_probs=63.7
Q ss_pred HHhccCCCCeeecCCc-cCCCCcchhccCCcchHHHHHhhhhcCCCCCccccCCCCCcEEEeeCCcCCCCCCChhhcccc
Q 041723 35 LAEKLANLKVLHLGQV-NTASTVPYASANLSSLFSLLSLIAYCKENFLPSLGNLTKLNDLYLFGNDFSGKVPDSLGDLLQ 113 (228)
Q Consensus 35 ~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~~~l~~~~~~~~p~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 113 (228)
.+.+-+.|++|+++++ .+.... .+.+. ..+..-..|+.|++++|.+.+..-.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~g---------a~~la-----------~aL~~N~~L~~L~L~~n~igd~ga~------- 88 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKER---------IRSLI-----------EAACNSKHIEKFSLANTAISDSEAR------- 88 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHH---------HHHHH-----------HHHTTCSCCCEEECTTSCCBHHHHT-------
T ss_pred HHhcCCCccEEECCCCCCCCHHH---------HHHHH-----------HHHhhCCCcCEEEccCCCCChHHHH-------
Confidence 3445567888888875 554211 11111 0222334566777777766521111
Q ss_pred ccccccccchhhhcCCCCCEEeccCCcccccCc----cccccCCCCCEEEccCCcc---ccC--CCcchhhhcCCCCCEE
Q 041723 114 LNYLTGEILVEIRKLTQLHILRLAENQLEGSVP----SSIFELRNLRALDLSDNNL---SGT--GDLNMVLLNLESLTAL 184 (228)
Q Consensus 114 ~~~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~~---~~~--~~~p~~~~~l~~L~~L 184 (228)
.+...+...+.|++|++++|.|.+... ..+..-..|+.|+++++.. .+. ..+-..+..-+.|+.+
T Consensus 89 ------alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L 162 (197)
T 1pgv_A 89 ------GLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRV 162 (197)
T ss_dssp ------THHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred ------HHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeE
Confidence 122234455667777777777654322 2334455677777765422 210 0233345555677777
Q ss_pred EccCCcc
Q 041723 185 VLSSNKL 191 (228)
Q Consensus 185 ~L~~n~l 191 (228)
+++.|.+
T Consensus 163 ~l~~~~~ 169 (197)
T 1pgv_A 163 GISFASM 169 (197)
T ss_dssp ECCCCCH
T ss_pred eccCCCc
Confidence 7766654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.45 E-value=0.0082 Score=41.66 Aligned_cols=38 Identities=26% Similarity=0.256 Sum_probs=30.7
Q ss_pred CCCCEEeccCCcccccCccccccCCCCCEEEccCCccc
Q 041723 129 TQLHILRLAENQLEGSVPSSIFELRNLRALDLSDNNLS 166 (228)
Q Consensus 129 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 166 (228)
+++++|++++|.++...+..|..+++|+.|++++|.+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36889999999998544556788889999999998875
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.22 E-value=0.0033 Score=46.99 Aligned_cols=89 Identities=12% Similarity=0.113 Sum_probs=43.9
Q ss_pred hcCCCCCEEeccCC-ccccc----CccccccCCCCCEEEccCCccccC--CCcchhhhcCCCCCEEEccCCccccccCcc
Q 041723 126 RKLTQLHILRLAEN-QLEGS----VPSSIFELRNLRALDLSDNNLSGT--GDLNMVLLNLESLTALVLSSNKLSLLAGTT 198 (228)
Q Consensus 126 ~~l~~L~~L~ls~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~--~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 198 (228)
..-+.|++|+++++ .+... +...+..-..|+.|++++|.+.+. ..+-..+..-..|++|+|++|.+.......
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34455666666654 44321 122334455666666666666531 233334444556666666666665432211
Q ss_pred ---ccCCCCCccccccccc
Q 041723 199 ---VNTNLPNFTIIGSVHE 214 (228)
Q Consensus 199 ---~~~~l~~L~~l~l~~n 214 (228)
-+..-..|++|+|++|
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 0233344666666543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=46.07 E-value=27 Score=22.36 Aligned_cols=38 Identities=16% Similarity=0.098 Sum_probs=17.2
Q ss_pred cccccCCCCCEEEccCCccccCCCcchhhhcCCCCCEEEcc
Q 041723 147 SSIFELRNLRALDLSDNNLSGTGDLNMVLLNLESLTALVLS 187 (228)
Q Consensus 147 ~~~~~l~~L~~L~l~~n~~~~~~~~p~~~~~l~~L~~L~L~ 187 (228)
..|.++.+|+.+.+..+--. .-...|.++.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~v~~---Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPNIGL---LYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTTSSC---CCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCchhe---EcHHHHhccCCccEEEEc
Confidence 34445555555555443211 123344555555555554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.21 E-value=12 Score=24.16 Aligned_cols=45 Identities=13% Similarity=0.117 Sum_probs=26.8
Q ss_pred CCcccccchhhhcccccccccccCCCC--h-HHHHhccCCCCeeecCC
Q 041723 5 GTRKKKIATAAYGTASNAMKTLLQSPS--L-ANLAEKLANLKVLHLGQ 49 (228)
Q Consensus 5 ~~~~~~~~~~~~~~l~~l~~l~l~~~~--l-~~~~~~l~~L~~L~l~~ 49 (228)
|..+..+...+|.++++|+.+.+-.+- + ..+|..|.+|+.+.+..
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPNIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCchheEcHHHHhccCCccEEEEcC
Confidence 445566666667776666666665553 2 23566666666666644
Done!