Your job contains 1 sequence.
>041729
MPTAPWMRSPIVLQPDEIIKPSKPKTKKSFKKTDKGLTAKESGVRGKQAMKKIIENIEKL
QKDQILDETQKKVMEKFEFKGCFEENVSHEEDLRGGFGGKVPWLREDRFVFRRMKKERMV
TKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLC
RNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTHLHL
EKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGP
RFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFV
LGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDD
GVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAI
ETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLERELRKQERK
LLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVIT
KQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQA
LRRSLEMQRLGSLKFFRIPETAGHLQFENQTYLPKKAKLLAHLPLYCLLSQISSVRIYFP
SSSDSSLQVFRHEGNNCDEMMGYA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 041729
(744 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2181372 - symbol:CRS1 "ortholog of maize chlor... 951 1.0e-154 2
TAIR|locus:2094997 - symbol:EMB1865 "embryo defective 186... 509 4.4e-95 3
TAIR|locus:2094558 - symbol:CFM3A "CRM family member 3A" ... 470 6.0e-90 3
TAIR|locus:2096662 - symbol:CFM2 "CRM family member 2" sp... 857 1.2e-87 2
TAIR|locus:2091458 - symbol:AT3G27550 species:3702 "Arabi... 218 1.4e-14 1
TAIR|locus:2123276 - symbol:AT4G13070 species:3702 "Arabi... 207 6.7e-14 1
TAIR|locus:2056558 - symbol:AT2G28480 species:3702 "Arabi... 199 7.9e-13 1
TAIR|locus:2094438 - symbol:LOH1 "LAG One Homologue 1" sp... 194 8.7e-12 2
>TAIR|locus:2181372 [details] [associations]
symbol:CRS1 "ortholog of maize chloroplast splicing
factor CRS1" species:3702 "Arabidopsis thaliana" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0000373 "Group II intron splicing" evidence=IDA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 Gene3D:3.30.110.60
SUPFAM:SSF75471 GO:GO:0000373 EMBL:AL391148 IPI:IPI00521200
PIR:T51488 RefSeq:NP_197122.2 UniGene:At.50459 UniGene:At.54863
ProteinModelPortal:Q9LF10 SMR:Q9LF10 PaxDb:Q9LF10 PRIDE:Q9LF10
GeneID:831476 KEGG:ath:AT5G16180 TAIR:At5g16180 eggNOG:NOG322716
HOGENOM:HOG000241574 InParanoid:Q9LF10 OMA:KIERSNQ
ArrayExpress:Q9LF10 Genevestigator:Q9LF10 Uniprot:Q9LF10
Length = 720
Score = 951 (339.8 bits), Expect = 1.0e-154, Sum P(2) = 1.0e-154
Identities = 206/408 (50%), Positives = 281/408 (68%)
Query: 282 IDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLT 341
I SLYERE DRLLDGLGPR++DWWM +P PVD DLLPEVV G+ P R PP+ R+KLT
Sbjct: 303 ISSSLYEREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLT 362
Query: 342 DDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMA 401
D+ELTYLR +A PLP HFVLGRN GLQGLA+AI+KLWEK ++AKI +KWG NT+NE+MA
Sbjct: 363 DEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMA 422
Query: 402 NELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNK-FL----IILYRGKDFLPCGVEN 456
+EL+ + GVL++++ ++L R K FL L ++ L ++
Sbjct: 423 DELR-----------YLTGGVLILRNKYL-IVLYRGKDFLSDEVADLVEDRERLLSRYQH 470
Query: 457 LI-VERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFG----D 511
+RE ++++ + G +LK E E K G + +N++++ +
Sbjct: 471 FEETKRESDIELLEVVTNGKQLKETNKSGTLLEFQELQRKFGEMDP-RNLETEAEKARLE 529
Query: 512 LKMGNREFELQ-LEAEIEDXXXXXXXXXXXXX-XXXDPDLEMITEEERQCLHKIGMKINS 569
++ ++E +L L+++IE D D+E++T EER+CL +IG+K+NS
Sbjct: 530 KELKSQEHKLSILKSKIEKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNS 589
Query: 570 NLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKL 629
+L+LGRRGVF GV+EGLHQHWK+REVA+VIT QKLF++V+YTAK+L ES G+LIS++KL
Sbjct: 590 SLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLISIEKL 649
Query: 630 KEGHAIIIYRGKNYRRPL-KLMTQNLLSKRQALRRSLEMQRLGSLKFF 676
KEGHAI+IYRGKNY+RP KLM QNLL+KR+AL+RS+ MQRLGSLKFF
Sbjct: 650 KEGHAILIYRGKNYKRPSSKLMAQNLLTKRKALQRSVVMQRLGSLKFF 697
Score = 579 (208.9 bits), Expect = 1.0e-154, Sum P(2) = 1.0e-154
Identities = 119/219 (54%), Positives = 154/219 (70%)
Query: 1 MPTAPWMRSPIVLQPDEIIXXXXXXX-XXXXXXXXXGLTAKESGVRGKQAMKKIIENIEK 59
+PTAPWM+ P++L+PDEI+ L +ESGVRGK+AMKKI+ N+EK
Sbjct: 83 VPTAPWMKGPLLLRPDEILDTKKRNKPRKVEEKTFKALNRRESGVRGKKAMKKIVRNVEK 142
Query: 60 LQKDQILDETQKKVMEKFEFKGCFEENVSHEEDLRGGFGGKVPWLRED-RFVFRRMKKER 118
L +D +ETQ + +FE+ G EE V ++ FGGK+PW RE+ RF+ RRMKKE
Sbjct: 143 LDEDSDSEETQMDDLSEFEYLGRIEEKVESKDR----FGGKMPWEREEERFILRRMKKES 198
Query: 119 MVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVP 178
+ T AE +LD LL RL+ EA KMRKWV V+KAGVTE VV +I+ W+ NELAMV+FDVP
Sbjct: 199 VPTTAELILDEGLLNRLRREASKMRKWVNVRKAGVTELVVNKIKSMWKLNELAMVRFDVP 258
Query: 179 LCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSS 217
LCRNM+RA+EI+E+KTGGLV+ +KK+ VVYRG S SS
Sbjct: 259 LCRNMERAQEIIEMKTGGLVVLSKKEFLVVYRGGPSYSS 297
Score = 39 (18.8 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 717 IYFPSSSDSSLQVFRHEGNNCDEMMG 742
++ PS D +++ +E C +G
Sbjct: 559 LWKPSEGDDDIEILTNEERECLRRIG 584
>TAIR|locus:2094997 [details] [associations]
symbol:EMB1865 "embryo defective 1865" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=NAS] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0016117
"carotenoid biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 GO:GO:0009737 GO:GO:0009507
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AB026658
Gene3D:3.30.110.60 SUPFAM:SSF75471 HOGENOM:HOG000241574
EMBL:AY063908 IPI:IPI00520842 RefSeq:NP_188468.1 UniGene:At.20890
ProteinModelPortal:Q9LS51 SMR:Q9LS51 STRING:Q9LS51 PaxDb:Q9LS51
PRIDE:Q9LS51 EnsemblPlants:AT3G18390.1 GeneID:821368
KEGG:ath:AT3G18390 TAIR:At3g18390 eggNOG:NOG326934
InParanoid:Q9LS51 OMA:DMKTAHE PhylomeDB:Q9LS51
ProtClustDB:CLSN2684381 ArrayExpress:Q9LS51 Genevestigator:Q9LS51
Uniprot:Q9LS51
Length = 848
Score = 509 (184.2 bits), Expect = 4.4e-95, Sum P(3) = 4.4e-95
Identities = 121/293 (41%), Positives = 168/293 (57%)
Query: 115 KKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVK 174
++ R + AE ++ L RL+ + +R + + KAG+T++V+ +I WR+ EL +K
Sbjct: 231 RRARAPSLAELTVEDSELRRLRRDGMYLRVRINIPKAGLTQAVMEKIYDTWRKEELVRLK 290
Query: 175 FDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSK 234
F L R+M A EI+E +TGG+VIW VVYRG K P ++ P K
Sbjct: 291 FHEVLARDMKTAHEIVERRTGGMVIWRAGSVMVVYRGLDYKGP----PVISNQMAGP--K 344
Query: 235 STHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKN-LRIDKSLYER-EGD 292
T ++ ++ D+ + KD + L + KN +R + E E +
Sbjct: 345 ET----------LFVPDVSSAGDEATNAKDNQSAPLVIKDPIIKNPIRKENMTEEEVEFN 394
Query: 293 RLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLA 352
LLD LGPRF +WW LPVD DLLP +PG+K PFRL P RS LT+ E+T LRK+
Sbjct: 395 SLLDSLGPRFQEWWGTGVLPVDADLLPPTIPGYKTPFRLLPTGMRSNLTNAEMTNLRKIG 454
Query: 353 HPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELK 405
LP HF LGRNR QGLA AIL++WEKSL+AKI VK GI NT+N+ MA+E+K
Sbjct: 455 KTLPCHFALGRNRNHQGLAAAILQIWEKSLIAKIAVKRGIQNTNNKLMADEVK 507
Score = 350 (128.3 bits), Expect = 4.4e-95, Sum P(3) = 4.4e-95
Identities = 67/124 (54%), Positives = 95/124 (76%)
Query: 546 DPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLF 605
D D E+I+EEER K+G+K+ + L +G RGVFDGVIE +H HWK+RE+ ++I+KQK
Sbjct: 647 DYDQEVISEEERAMFRKVGLKMKAYLPIGIRGVFDGVIENMHLHWKHRELVKLISKQKNQ 706
Query: 606 AQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSL 665
A V TA+ L ESGG+L++++K+ +G A+I YRGKNYRRP+ L +NLL+K +AL+RS+
Sbjct: 707 AFVEETARLLEYESGGVLVAIEKVPKGFALIYYRGKNYRRPISLRPRNLLTKAKALKRSI 766
Query: 666 EMQR 669
MQR
Sbjct: 767 AMQR 770
Score = 166 (63.5 bits), Expect = 4.4e-95, Sum P(3) = 4.4e-95
Identities = 39/92 (42%), Positives = 57/92 (61%)
Query: 428 LTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPD 487
LTGGVLLLRNK+ I++YRGKDFLP V + ER+ + Q+ EE R + IE
Sbjct: 509 LTGGVLLLRNKYYIVIYRGKDFLPSSVAATLAERQELTKEIQDVEERVRNREIEAVQPVG 568
Query: 488 EPLEKTSKAGTLSEFQNIQSDFG-DLKMGNRE 518
+ + ++AGTL+EF Q+ +G ++ +RE
Sbjct: 569 DKVP--AEAGTLAEFYEAQARWGKEITPDHRE 598
Score = 76 (31.8 bits), Expect = 9.3e-52, Sum P(2) = 9.3e-52
Identities = 33/121 (27%), Positives = 59/121 (48%)
Query: 403 ELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNK----FLIILYRGKDFL-PCGVE-- 455
EL ++K K N F ++ L+++ +GGVL+ K F +I YRGK++ P +
Sbjct: 695 ELVKLISKQK-NQAFVEETARLLEYESGGVLVAIEKVPKGFALIYYRGKNYRRPISLRPR 753
Query: 456 NLIVERE---RELQICQNHEE-GARLKAIE-TFHLPDEPLEKTSKAGTLSEFQNIQSDFG 510
NL+ + + R + + Q HE + +E T L + + + SE++N + D
Sbjct: 754 NLLTKAKALKRSIAM-QRHEALSQHISELERTIEQMQSQLTSKNPSYSESEWENDEDDDD 812
Query: 511 D 511
D
Sbjct: 813 D 813
Score = 53 (23.7 bits), Expect = 3.8e-29, Sum P(2) = 3.8e-29
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 165 WRRNELAM--VKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRG-DGSKSSV 218
W ++ +A VK + N A E+ L TGG+++ K V+YRG D SSV
Sbjct: 480 WEKSLIAKIAVKRGIQNTNNKLMADEVKTL-TGGVLLLRNKYYIVIYRGKDFLPSSV 535
Score = 52 (23.4 bits), Expect = 4.8e-29, Sum P(2) = 4.8e-29
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 424 LMQHLTGGVLLLRNKFLIILYRGKDF 449
+++ TGG+++ R ++++YRG D+
Sbjct: 305 IVERRTGGMVIWRAGSVMVVYRGLDY 330
>TAIR|locus:2094558 [details] [associations]
symbol:CFM3A "CRM family member 3A" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0000373 "Group II
intron splicing" evidence=IMP] [GO:0048316 "seed development"
evidence=IGI] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 GO:GO:0009507 EMBL:CP002686 GO:GO:0003723
GO:GO:0048316 Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373
IPI:IPI00537962 RefSeq:NP_188947.2 UniGene:At.6125 UniGene:At.71222
ProteinModelPortal:F4J2U9 SMR:F4J2U9 PRIDE:F4J2U9
EnsemblPlants:AT3G23070.1 GeneID:821881 KEGG:ath:AT3G23070
OMA:VEILRHE Uniprot:F4J2U9
Length = 881
Score = 470 (170.5 bits), Expect = 6.0e-90, Sum P(3) = 6.0e-90
Identities = 126/368 (34%), Positives = 192/368 (52%)
Query: 47 KQAMKKIIENIEKLQKDQILDETQKKVMEKFEFKGCF-EENVSHEEDLRGGFGGK-VPW- 103
++ K IE +++K + D + + +G F EE++ E++ G G PW
Sbjct: 133 EEVQNKEIEQERRIEKGSVEDIFYVEEGKLPNTRGGFTEESLLGGENVIGSNGDVGFPWE 192
Query: 104 ---LREDRFVFRRM--KKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVV 158
+E + + KKE + AE L L RL++ + ++++ GVT+ V
Sbjct: 193 KMSAKEKKELEAEWTAKKENRYSLAEMTLPESELRRLRNLTFRTASKMRIRGGGVTQVAV 252
Query: 159 FEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSK-SS 217
I+ W+ E+ +K + NM + EILE KTGGLVIW + +YRG + S
Sbjct: 253 DAIKEKWKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIWRSGTSISLYRGVSYELPS 312
Query: 218 VKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMD 277
K + ++ H V+ S K + L+Q + + ++ + P
Sbjct: 313 GKWNKQRREETPPEAVIENHDETTTMVDKSDEKVHLPQLEQETTSVEKKDQTSPV----- 367
Query: 278 KNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDAR 337
++ YE E D LLD LGPRF+DW PLPVD DLLP +P ++PPFR+ P R
Sbjct: 368 ----VE---YEDELDELLDDLGPRFMDWPGDNPLPVDADLLPGAIPDYEPPFRVLPYGVR 420
Query: 338 SKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDN 397
S L E T LR+LA +P HF LGR+R LQGLATA+++LWEKS++AKI +K G+ +T +
Sbjct: 421 SSLGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTS 480
Query: 398 EQMANELK 405
E+MA +LK
Sbjct: 481 ERMAEDLK 488
Score = 368 (134.6 bits), Expect = 6.0e-90, Sum P(3) = 6.0e-90
Identities = 72/128 (56%), Positives = 97/128 (75%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E IT+EER K+G+K+ + LLLGRRGVFDG +E +H HWKYRE+ ++I K K F
Sbjct: 634 DPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDG 693
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEM 667
V A +L AESGGIL+S+DK+ +G+AII+YRG++Y+RP L +NLL+KR+AL RS+E+
Sbjct: 694 VKKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALARSIEL 753
Query: 668 QRL-GSLK 674
QR G LK
Sbjct: 754 QRREGLLK 761
Score = 167 (63.8 bits), Expect = 6.0e-90, Sum P(3) = 6.0e-90
Identities = 40/105 (38%), Positives = 61/105 (58%)
Query: 425 MQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFH 484
++ LTGG++L RNK ++ YRGK+FL V + +VE+ER ++ Q+ EE ARL+
Sbjct: 487 LKKLTGGIMLSRNKDFLVFYRGKNFLSREVADALVEQERFVRTLQDEEEQARLRGSSALI 546
Query: 485 LPD-EPLEKTSKAGTLSEFQNIQSDFG-DLKMGNREFELQLEAEI 527
+P EP K AGTL E + +G +L + E++ E EI
Sbjct: 547 VPSTEPANKLVSAGTLGETLDATGKWGKNLDDDDHSDEVKQEVEI 591
Score = 60 (26.2 bits), Expect = 6.2e-33, Sum P(3) = 6.2e-33
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 161 IRLAWRRNELAMVKFDVPL-CRNMDRAREILELKTGGLVIWTKKDAHVVYRG 211
+RL W ++ LA + + +R E L+ TGG+++ KD V YRG
Sbjct: 458 VRL-WEKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGIMLSRNKDFLVFYRG 508
Score = 58 (25.5 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 27/109 (24%), Positives = 53/109 (48%)
Query: 420 DGV----LLMQHLTGGVLLLRNK----FLIILYRGKDFL-PCGV--ENLIVERERELQIC 468
DGV L ++ +GG+L+ +K + II+YRG+D+ P + +NL+ +R+ +
Sbjct: 692 DGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALARSI 751
Query: 469 QNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNR 517
+ LK I T + L + + + + +D GD ++ N+
Sbjct: 752 ELQRREGLLKHISTMQAKAKQLR-----AEIEQMEKV-TDKGDEELYNK 794
Score = 52 (23.4 bits), Expect = 4.6e-44, Sum P(3) = 4.6e-44
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 50 MKKIIENIEKLQKDQILDETQKKVME---KFEFKGCFEENVSHEE----DLRGGF 97
M+KI+E KL+K ++E Q K +E + E KG E+ EE + RGGF
Sbjct: 119 MEKIVE---KLKKYGYMEEVQNKEIEQERRIE-KGSVEDIFYVEEGKLPNTRGGF 169
Score = 38 (18.4 bits), Expect = 1.3e-42, Sum P(3) = 1.3e-42
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 46 GKQAMKKIIENIEKLQKDQILDETQKKVMEKFEFKGCFEENVSHEE 91
G+ + +I+ + +D T +K++EK + G EE V ++E
Sbjct: 96 GRFSGSEIVSGDDNRSRDGD-GSTMEKIVEKLKKYGYMEE-VQNKE 139
>TAIR|locus:2096662 [details] [associations]
symbol:CFM2 "CRM family member 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;RCA] [GO:0000372 "Group I
intron splicing" evidence=IMP] [GO:0000373 "Group II intron
splicing" evidence=IMP] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 EMBL:CP002686 GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373 GO:GO:0000372
EMBL:AY136347 EMBL:BT010594 IPI:IPI00518423 RefSeq:NP_186786.2
UniGene:At.28082 ProteinModelPortal:Q8L7C2 SMR:Q8L7C2 IntAct:Q8L7C2
STRING:Q8L7C2 PaxDb:Q8L7C2 PRIDE:Q8L7C2 EnsemblPlants:AT3G01370.1
GeneID:821288 KEGG:ath:AT3G01370 TAIR:At3g01370 eggNOG:NOG300241
InParanoid:Q8L7C2 OMA:ASMIKLW PhylomeDB:Q8L7C2
ProtClustDB:CLSN2690653 ArrayExpress:Q8L7C2 Genevestigator:Q8L7C2
Uniprot:Q8L7C2
Length = 1011
Score = 857 (306.7 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
Identities = 218/576 (37%), Positives = 305/576 (52%)
Query: 103 WLREDRFVFRRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIR 162
W +E R K+E++ + AE L L RL+ ++ K +K+ KAG+TE +V I
Sbjct: 144 WKKETEM--ERKKEEKVPSLAELTLPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIH 201
Query: 163 LAWRRNELAMVKFDVPLCR-NMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMC 221
WR E+ + F + R NM R ++LE KTGGLVIW ++YRG + +
Sbjct: 202 ERWRTTEVVKI-FCEDISRMNMKRTHDVLETKTGGLVIWRSGSKILLYRGVNYQYPYFVS 260
Query: 222 PRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLR 281
R + A + S + I ++A N+ +K + + + L
Sbjct: 261 DRDLAHEAASGASSMDQGVVDSREKQSIAESSAPSITNKMVKPMLTQGVGSPDKVRFQLP 320
Query: 282 IDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLT 341
+ L E E DRLL+GLGPRF DWW + PLPVDGDLLP VVP ++ PFRL P KLT
Sbjct: 321 GEVQLVE-EADRLLEGLGPRFTDWWAYDPLPVDGDLLPAVVPDYRRPFRLLPYGVSPKLT 379
Query: 342 DDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMA 401
DDE+T +R+L PLP HF LGRNR LQGLA AI+KLWEK +AKI VK G+ NT++E MA
Sbjct: 380 DDEMTTIRRLGRPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSELMA 439
Query: 402 NELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVER 461
ELK W G L+ + ++L R K + + +I+E
Sbjct: 440 EELK-----WLTG------GTLISRD-KDFIVLYRGKDFLPSAVSSAIEERRRQTMIMEN 487
Query: 462 E--RELQICQNHEEGARLKAI-ETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNRE 518
++ +N EE + +A+ E L + + + + Q S L+ + +
Sbjct: 488 SSVHGNKLTENEEE-IKPRAVKEDIELEAKDQKDHIQTHQMKSRQR-NSPEAILEKTSMK 545
Query: 519 FELQLEAEIEDXXXXXXXXXXXXXXXXDPDLEMITEEERQCLHKIGMKINSNLLLGRRGV 578
+ LE + D D E IT +E+ L KIG+K+ LLLGRRGV
Sbjct: 546 LSMALEKKANAEKVLADLENRESPQLSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGV 605
Query: 579 FDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIY 638
FDG IE +H HWKYRE+ ++I + A+ L AESGGIL++V+ + +G+AII+Y
Sbjct: 606 FDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVY 665
Query: 639 RGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLK 674
RGKNY RP L Q LLSKR+AL+RS+E QR SLK
Sbjct: 666 RGKNYERPQCLRPQTLLSKREALKRSVEAQRRKSLK 701
Score = 138 (53.6 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 33/138 (23%), Positives = 71/138 (51%)
Query: 547 PDLEMIT--EEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKL 604
P L +T E + L +G+++ L +G+ G+ +G++ G+H+ W+ EV ++ +
Sbjct: 159 PSLAELTLPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDIS 218
Query: 605 FAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRS 664
+ T L ++GG++I + G I++YRG NY+ P + ++L + + S
Sbjct: 219 RMNMKRTHDVLETKTGGLVI----WRSGSKILLYRGVNYQYPYFVSDRDLAHEAASGASS 274
Query: 665 LEMQRLGSLKFFRIPETA 682
++ + S + I E++
Sbjct: 275 MDQGVVDSREKQSIAESS 292
Score = 38 (18.4 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 713 SSVRIYFPSSSDSSLQVFRHEGNNCD 738
+S + Y S+S+ RHEGN+ D
Sbjct: 787 TSSQEYQEDESESASSQ-RHEGNSLD 811
>TAIR|locus:2091458 [details] [associations]
symbol:AT3G27550 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:AB025626 IPI:IPI00525575
RefSeq:NP_189392.1 UniGene:At.37034 ProteinModelPortal:Q9LT57
SMR:Q9LT57 EnsemblPlants:AT3G27550.1 GeneID:822377
KEGG:ath:AT3G27550 TAIR:At3g27550 eggNOG:NOG248894
HOGENOM:HOG000241218 InParanoid:Q9LT57 OMA:RMRKESG PhylomeDB:Q9LT57
ProtClustDB:CLSN2685015 Genevestigator:Q9LT57 Uniprot:Q9LT57
Length = 491
Score = 218 (81.8 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 52/140 (37%), Positives = 81/140 (57%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E+ T E+ Q KIG K + + +G RGVF GV++ +H HWK+ E +V +
Sbjct: 88 DPELFTSEQVQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCC-DNFPKE 146
Query: 608 VIYTAKSLVAE-SGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLE 666
I S++A SGG++I++ +K II++RG+NYR+P L+ N L+KR+AL ++
Sbjct: 147 KIKEMASMIARLSGGVVINIHNVK---TIIMFRGRNYRQPKNLIPVNTLTKRKALFKARF 203
Query: 667 MQRLGSLKFFRIPETAGHLQ 686
Q L S K I +T L+
Sbjct: 204 EQALESQKL-NIKKTEQQLR 222
>TAIR|locus:2123276 [details] [associations]
symbol:AT4G13070 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:BT022043 EMBL:BT029203
EMBL:AK175251 EMBL:AK176471 EMBL:AK176848 IPI:IPI00516587
RefSeq:NP_193043.2 UniGene:At.43316 ProteinModelPortal:Q67YJ7
SMR:Q67YJ7 EnsemblPlants:AT4G13070.1 GeneID:826921
KEGG:ath:AT4G13070 TAIR:At4g13070 eggNOG:NOG314366
HOGENOM:HOG000241798 InParanoid:Q67YJ7 OMA:NELRFYR PhylomeDB:Q67YJ7
ProtClustDB:CLSN2918582 Genevestigator:Q67YJ7 Uniprot:Q67YJ7
Length = 343
Score = 207 (77.9 bits), Expect = 6.7e-14, P = 6.7e-14
Identities = 51/117 (43%), Positives = 68/117 (58%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQ-KLFA 606
D E +TEEE+ L + G K + +L+GRRGVF GV+ LH HWK E +VI K
Sbjct: 178 DPESLTEEEQHYLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPG 237
Query: 607 QVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRR 663
QV A+ L S GI+I V K + I++YRGKNY RP + + LSK +AL +
Sbjct: 238 QVHEYAEELARLSKGIVIDV---KPNNTIVLYRGKNYVRPEVMSPVDTLSKDKALEK 291
>TAIR|locus:2056558 [details] [associations]
symbol:AT2G28480 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
EMBL:AC006587 Gene3D:3.30.110.60 SUPFAM:SSF75471
HOGENOM:HOG000241798 EMBL:BT011753 EMBL:AK226713 IPI:IPI00526248
PIR:D84685 RefSeq:NP_180415.1 UniGene:At.50106
ProteinModelPortal:Q9SK10 SMR:Q9SK10 EnsemblPlants:AT2G28480.1
GeneID:817396 KEGG:ath:AT2G28480 TAIR:At2g28480 eggNOG:NOG245924
InParanoid:Q9SK10 OMA:ANRKDPR PhylomeDB:Q9SK10
ProtClustDB:CLSN2913133 Genevestigator:Q9SK10 Uniprot:Q9SK10
Length = 372
Score = 199 (75.1 bits), Expect = 7.9e-13, P = 7.9e-13
Identities = 49/125 (39%), Positives = 71/125 (56%)
Query: 552 ITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYT 611
IT EER L K+G K ++ + +GRRGVF GVI +H HWK E +VI QV
Sbjct: 164 ITGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQVQQY 223
Query: 612 AKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLG 671
A+ L SGG+ +++ + + II YRGK Y +P + + LSK++A +S Q L
Sbjct: 224 AEELAKLSGGVPVNI--IGDD-TIIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKYEQSLE 280
Query: 672 SLKFF 676
S++ F
Sbjct: 281 SVRHF 285
>TAIR|locus:2094438 [details] [associations]
symbol:LOH1 "LAG One Homologue 1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0042761 "very
long-chain fatty acid biosynthetic process" evidence=IGI]
[GO:0050291 "sphingosine N-acyltransferase activity" evidence=IGI]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
EMBL:AB025639 GO:GO:0042761 Gene3D:3.30.110.60 SUPFAM:SSF75471
GO:GO:0050291 KO:K01148 EMBL:AK176804 IPI:IPI00542084
RefSeq:NP_189171.2 UniGene:At.37388 ProteinModelPortal:Q67XL4
SMR:Q67XL4 PaxDb:Q67XL4 PRIDE:Q67XL4 EnsemblPlants:AT3G25440.1
GeneID:822128 KEGG:ath:AT3G25440 TAIR:At3g25440 eggNOG:NOG254408
HOGENOM:HOG000240887 InParanoid:Q67XL4 OMA:RRYIPRL PhylomeDB:Q67XL4
ProtClustDB:CLSN2681576 Genevestigator:Q67XL4 Uniprot:Q67XL4
Length = 444
Score = 194 (73.4 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 49/141 (34%), Positives = 81/141 (57%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E++T EE K+G+K + + +GRRG++ GVI +H HWK + +V+ K +
Sbjct: 173 DPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDE 232
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY-RRPLKLMTQNL-LSKRQALRRSL 665
V A L +GGI++ V EG+ II+YRGKNY + P ++M+ + L +++AL +S
Sbjct: 233 VKEIAVELARLTGGIVLDVH---EGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSK 289
Query: 666 EMQRLGSLKFFRIPETAGHLQ 686
L +++ + IP LQ
Sbjct: 290 CRDALRAVRKY-IPRLEQELQ 309
Score = 42 (19.8 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 101 VPWLREDRFVFRRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTES 156
V WL+ R+ ++ + ERM T E +L+ +L + K E R M K++ + E+
Sbjct: 118 VRWLKFFRWK-KKKEFERM-TSEEKILN-KLRKARKKEERLMETMKKLEPSESAET 170
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.137 0.404 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 744 699 0.00082 121 3 11 22 0.40 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 8
No. of states in DFA: 627 (67 KB)
Total size of DFA: 370 KB (2183 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 60.16u 0.09s 60.25t Elapsed: 00:00:05
Total cpu time: 60.16u 0.09s 60.25t Elapsed: 00:00:05
Start: Sat May 11 02:35:23 2013 End: Sat May 11 02:35:28 2013