BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041729
(744 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225452088|ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1184
Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/710 (61%), Positives = 520/710 (73%), Gaps = 59/710 (8%)
Query: 1 MPTAPWMRSPIVLQPDEIIKPSKPKTKK-----SFKKTDKGLTAKESGVRGKQAMKKIIE 55
MPTAPWM+ P++LQP+E++ SK + KK +K D+ LT K SG RG +AMKKI++
Sbjct: 75 MPTAPWMKGPLLLQPNEVLDLSKARPKKVAGSAGAEKPDRSLTEKVSGGRGAKAMKKIMQ 134
Query: 56 NIEKLQKDQILDETQKKVMEKFEFKGCFEENVSHEEDLRGGFGGKVPWLREDRFVFRRMK 115
+I KLQ+ DETQ+ E+FEF G E + +E+ R GGK+PWL+ ++ VFRR K
Sbjct: 135 SIVKLQETHTSDETQENT-EEFEF-GVSLEGIGGDENSR--IGGKMPWLKTEKVVFRRTK 190
Query: 116 KERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKF 175
KE++VT AE LD LLERL+ EA KMRKWVKVKKAGVTESVV +I + W+ +ELAMVKF
Sbjct: 191 KEKVVTAAELTLDPMLLERLRGEAVKMRKWVKVKKAGVTESVVDQIHMVWKSDELAMVKF 250
Query: 176 DVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVK----MCPRSADDQEAP 231
D+PLCRNMDRAREILE+KT GLVIW+KKD VVYRG +S+ K M P +A
Sbjct: 251 DMPLCRNMDRAREILEIKTRGLVIWSKKDTLVVYRGSNYQSTSKHFQKMRPGLVAGADAS 310
Query: 232 LSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLR---IDKSLYE 288
SK + E + +S IK + +T + KDGEE+S PT IFM++ + ++ SLYE
Sbjct: 311 NSKLNQSNFEDDLTISEIKFHESTTGEKMGRKDGEEDSSPTGIFMEEMVDSQPVNGSLYE 370
Query: 289 REGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYL 348
RE DRLLDGLGPRF+DWW KPLPVD DLLPEV+PGF+PPFRLSPP RSKLTDDELTYL
Sbjct: 371 READRLLDGLGPRFIDWWRPKPLPVDADLLPEVLPGFRPPFRLSPPQTRSKLTDDELTYL 430
Query: 349 RKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASL 408
RKLA+ LPTHFVLGRNR LQGLA AILKLWEKSL+ KI +KWGIPNT NEQMANELK
Sbjct: 431 RKLAYALPTHFVLGRNRKLQGLAAAILKLWEKSLIVKIAIKWGIPNTKNEQMANELKC-- 488
Query: 409 AKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQIC 468
LTGGVLLLRNKF IILYRGKDFLPC V NLIVERE E + C
Sbjct: 489 -------------------LTGGVLLLRNKFFIILYRGKDFLPCRVANLIVEREMEFKGC 529
Query: 469 QNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIE 528
Q EE ARLKAIET + D+PL TS GTLSEFQNI+++F LK GN E E++LEAE E
Sbjct: 530 QIREEDARLKAIETSFVTDKPLANTSTTGTLSEFQNIETEFRGLKDGNTEIEVELEAEKE 589
Query: 529 DLERELRKQERKLLL----------------------EQDPDLEMITEEERQCLHKIGMK 566
LE+EL+KQER L + + D D EMITEEER+C KIG K
Sbjct: 590 RLEKELKKQERNLFILKRKIERSAKVLAKLNSAWRPADHDADKEMITEEERECFRKIGQK 649
Query: 567 INSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISV 626
++S+LLLGRRGVFDGVIEGLHQHWK+RE+ +VIT Q+ F+QV+YTAK L +ESGG+L+S+
Sbjct: 650 MDSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLESESGGVLVSI 709
Query: 627 DKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKFF 676
DKLKEGHAIIIYRGKNYRRP+KL+ +NLL+KR+AL RSLEMQR+GSLKFF
Sbjct: 710 DKLKEGHAIIIYRGKNYRRPIKLVPKNLLTKREALNRSLEMQRIGSLKFF 759
>gi|255551422|ref|XP_002516757.1| conserved hypothetical protein [Ricinus communis]
gi|223544130|gb|EEF45655.1| conserved hypothetical protein [Ricinus communis]
Length = 742
Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/715 (60%), Positives = 515/715 (72%), Gaps = 96/715 (13%)
Query: 1 MPTAPWMRSPIVLQPDEIIKPSKPKTKKS-----FKKTDKGLTAKESGVRGKQAMKKIIE 55
+PTAPWM+ P++LQP E+I SKP+ K S +K+DK LT KESGVRGK+AM+KI++
Sbjct: 60 VPTAPWMKGPLLLQPHELINLSKPRNKNSSNNANIEKSDKVLTGKESGVRGKKAMEKIVK 119
Query: 56 NIEKLQKDQILDETQ--KKVMEKFEFKG-CFEENVSHEEDL---RGGFGGKV---PWLRE 106
+IE+LQ++Q L++TQ + EK + FE + + L G FG PW RE
Sbjct: 120 SIEQLQENQALEKTQCDSQAYEKTQLDSEAFE--IGEKLGLIREHGDFGVNKKLKPWERE 177
Query: 107 DRFVFRRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWR 166
++FV+ R+KKE+ VTKAE +L+ ELLE L+ EA KMRKWVKV KAGVT+SVV +IR AWR
Sbjct: 178 EKFVYWRIKKEKAVTKAELILEKELLEILRTEASKMRKWVKVMKAGVTQSVVDQIRYAWR 237
Query: 167 RNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSAD 226
NELAMVKFD+PLCRNMDRAREI+ELKTGGLV+WT+KD+ V+YRG
Sbjct: 238 NNELAMVKFDLPLCRNMDRAREIVELKTGGLVVWTRKDSLVIYRG--------------- 282
Query: 227 DQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFM--DKNL-RID 283
+ HL K +VS T+D+ KDGEE +PTSIF+ D N I+
Sbjct: 283 ---------CNYHLTKSSHVS-------TMDEKIGSKDGEEEYIPTSIFIGDDANTPTIN 326
Query: 284 KSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDD 343
SL+ERE DRLLDGLGPRFVDWWM KPLPVD DLLPEVV GF PP R AR+KL DD
Sbjct: 327 GSLFERETDRLLDGLGPRFVDWWMRKPLPVDADLLPEVVAGFMPPSRFHY--ARAKLKDD 384
Query: 344 ELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANE 403
ELTYLRKLA+ LPTHFVLGRNR LQGLA AILKLWE+SL+AKI VKWGIPNTDNEQMANE
Sbjct: 385 ELTYLRKLAYALPTHFVLGRNRRLQGLAAAILKLWERSLIAKIAVKWGIPNTDNEQMANE 444
Query: 404 LKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERER 463
LK HLTGGVLLLRNKF IIL+RGKDFLPC V +L+V+RE
Sbjct: 445 LK---------------------HLTGGVLLLRNKFFIILFRGKDFLPCQVADLVVKREN 483
Query: 464 ELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQL 523
EL+ICQ +EEGARLKAIET DE + K +K GTL+EFQ+IQ F +L G R+ +LQL
Sbjct: 484 ELKICQLNEEGARLKAIETSFTDDELVVKATKIGTLNEFQDIQVRFKELAKGYRDSKLQL 543
Query: 524 EAEIEDLERELRKQERKLLL----------------------EQDPDLEMITEEERQCLH 561
EAE E LERELR QE KLL+ +QD DLEM+TEEER+CL
Sbjct: 544 EAEKEKLERELRIQEHKLLILKSKIEKSARELSKLNSAWAPADQDADLEMMTEEERECLR 603
Query: 562 KIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGG 621
KIG+K+ S+LLLGRRGVFDGVIEGLHQHWK+REV +VI+ Q++FAQVI TAK L AE+GG
Sbjct: 604 KIGLKMRSSLLLGRRGVFDGVIEGLHQHWKHREVVKVISLQRMFAQVIRTAKFLEAETGG 663
Query: 622 ILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKFF 676
IL+S+DKLKEGHAIIIYRGKNYRRP +L+ NLL+KR+AL RSLEMQR+GSL+FF
Sbjct: 664 ILVSIDKLKEGHAIIIYRGKNYRRPQRLLN-NLLTKRKALCRSLEMQRIGSLRFF 717
>gi|224127512|ref|XP_002329296.1| predicted protein [Populus trichocarpa]
gi|222870750|gb|EEF07881.1| predicted protein [Populus trichocarpa]
Length = 687
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/704 (55%), Positives = 481/704 (68%), Gaps = 107/704 (15%)
Query: 1 MPTAPWMRSPIVLQPDEIIKPSKPKTKKSFK-----KTDKGLTAKESGVRGKQAMKKIIE 55
+PT PW++ P++LQP E++ + PK KK K K DK LTAKESGVRG +AM +I++
Sbjct: 28 VPTPPWIKGPLILQPHELLNLTNPKNKKPIKNDKIEKDDKALTAKESGVRGNKAMIQIVK 87
Query: 56 NIEKLQKDQILDETQKKVMEKFEFKGCFEENVSHEEDLRGGFGGKVPWLREDRFVFRRMK 115
++E+LQ+D+ L +TQ+ E + G K+PW+RE+R RMK
Sbjct: 88 SVERLQRDENLKDTQE----------------ISENGVLGFREKKLPWVREERVGNWRMK 131
Query: 116 KERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKF 175
KE++V+KAE LD ELLERL+ EA KMR WVKVKKAGVT+SVV EIRL WR +ELAM+KF
Sbjct: 132 KEKVVSKAELSLDKELLERLRGEAAKMRTWVKVKKAGVTQSVVDEIRLTWRTSELAMIKF 191
Query: 176 DVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKS 235
+PLCRNM+RAR+I+E TGGLV+WT+KD HVVYRG
Sbjct: 192 YMPLCRNMNRARDIVE--TGGLVVWTRKDIHVVYRG------------------------ 225
Query: 236 THLHLEKKVNVSWIKS-NTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRL 294
N W K+ NTAT+++N N+ P I+ SL+ERE DRL
Sbjct: 226 --------CNYQWKKNFNTATIEENL-------NTQP----------INGSLFERETDRL 260
Query: 295 LDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHP 354
LDGLGPRFVDWWM KPLPVD DLLPEVV GF+ P RL PP RSKL DDELTYLRKLA
Sbjct: 261 LDGLGPRFVDWWMRKPLPVDADLLPEVVKGFRSPSRLCPPRMRSKLKDDELTYLRKLAQS 320
Query: 355 LPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPN 414
LPTHFVLGRNR LQGLA AILKLWEK+++AKI VKWG+PNT+NEQMA+ELKA
Sbjct: 321 LPTHFVLGRNRRLQGLAAAILKLWEKTIIAKIAVKWGVPNTNNEQMADELKA-------- 372
Query: 415 FKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEG 474
K +L Q LTGGVLLLRNKF IILYRGKDFLP V N+IV+RE L+ CQ +EEG
Sbjct: 373 -KIFLMLMLYTQSLTGGVLLLRNKFFIILYRGKDFLPGQVANVIVDREIALRKCQTNEEG 431
Query: 475 ARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLEREL 534
AR+KAIET ++P P TS+ GTL EFQ Q F G+ E+QLEA E LEREL
Sbjct: 432 ARMKAIETSYMPGGP-TNTSRCGTLYEFQEFQIKFQKTAKGDS--EIQLEAYKEKLEREL 488
Query: 535 RKQERKLLL----------------------EQDPDLEMITEEERQCLHKIGMKINSNLL 572
R QE +L + +D D ++TEEER+C KIG+K+ +L+
Sbjct: 489 RNQEYRLRILKSKIEKPAKDLSKLNSAWVPSPRDADQGIMTEEERECFRKIGLKLRGSLV 548
Query: 573 LGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEG 632
LGRRGVF+GV+EGLHQHWK+REV +VIT Q++F+QVI+TA L AES GIL+SVDKLKEG
Sbjct: 549 LGRRGVFEGVMEGLHQHWKHREVVKVITMQRVFSQVIHTATLLEAESDGILVSVDKLKEG 608
Query: 633 HAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKFF 676
HAIIIYRGKNY+RPL+L+ +NLL+KR+AL+RSL +QR+GSLK+F
Sbjct: 609 HAIIIYRGKNYKRPLRLLKKNLLTKREALKRSLLIQRVGSLKYF 652
>gi|356567264|ref|XP_003551841.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 712
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/702 (54%), Positives = 480/702 (68%), Gaps = 94/702 (13%)
Query: 2 PTAPWMRSPIVLQPDEIIKPSKPKTKKSFKK-----TDKGLTAKESGVRGKQAMKKIIEN 56
PT PWM+ P++LQP E++ S PK+KK FK +DK L KE VRGK+AMKKI++
Sbjct: 47 PTPPWMKVPLLLQPHELVDLSNPKSKK-FKPEKHELSDKALMGKE--VRGKRAMKKIVDR 103
Query: 57 IEKLQKDQILDETQKKVMEKFEFKGCFEENVSHEEDLRGGFGGKVPWLREDRFVFRRMKK 116
+EKL K Q +ET+ + F G + E + E++R G++PW ++++F F ++K+
Sbjct: 104 VEKLHKTQNSNETRVDSLNVENF-GGYLEILKENEEVRSK--GRMPWEKDEKFGFVKVKR 160
Query: 117 ERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFD 176
E+ VT AE LD LL RL++EA +MR W+KVKKAGVT+ VV +I+ WRRNELAM+KFD
Sbjct: 161 EKAVTAAELTLDKALLRRLRNEAARMRTWIKVKKAGVTQDVVDQIKRTWRRNELAMIKFD 220
Query: 177 VPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKST 236
+PLCRNMDRAREI+E KTGGLV+ +KKD VVYRG SS +M +AD +++
Sbjct: 221 IPLCRNMDRAREIVETKTGGLVVLSKKDFLVVYRGCNHHSS-EMLNWNADHKDS------ 273
Query: 237 HLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLD 296
+T D N L +G SLYERE +RLLD
Sbjct: 274 --------------ISTGIQDVNCQLVNG-------------------SLYERETERLLD 300
Query: 297 GLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLP 356
GLGPRF+DWWM KPLPVD DLLPE VPGF+PPFRL PP + +KLTD ELTY RKLA LP
Sbjct: 301 GLGPRFIDWWMHKPLPVDADLLPEEVPGFQPPFRLCPPHSSAKLTDYELTYFRKLAQSLP 360
Query: 357 THFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFK 416
THFVLGRN+GL+GLA+AILKLWEKSL+AKI +K+GIPNTDNE MANELK
Sbjct: 361 THFVLGRNKGLKGLASAILKLWEKSLIAKIAIKYGIPNTDNEMMANELKC---------- 410
Query: 417 FSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGAR 476
LTGGVLLLRNKF I+LYRG DFLP V +L+ +RE EL+ Q HEE AR
Sbjct: 411 -----------LTGGVLLLRNKFYILLYRGNDFLPRSVASLVEKRELELKSRQLHEEVAR 459
Query: 477 LKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLERELRK 536
+KAI+ F DE TS +GTL+EF+ IQ+ D K N + +QLEAEI LE+EL++
Sbjct: 460 MKAIQAFSPIDEVPLDTSTSGTLTEFRKIQTKLEDTKSVNVDSNIQLEAEICRLEKELKE 519
Query: 537 QERKLLL----------------------EQDPDLEMITEEERQCLHKIGMKINSNLLLG 574
++R+ + EQD DLE++T+EER+C KIG+K+ S+LLLG
Sbjct: 520 EQRRAFILNKKIKRSERELSKLNAAWTPSEQDTDLEIMTDEERECFRKIGLKMQSSLLLG 579
Query: 575 RRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHA 634
RRG+FDGV+EGLHQHWK+REV +VIT QKLF+QVI TAK L ESGGIL+SVDKLKEGHA
Sbjct: 580 RRGIFDGVLEGLHQHWKHREVVKVITMQKLFSQVINTAKVLETESGGILVSVDKLKEGHA 639
Query: 635 IIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKFF 676
IIIYRGKNY+RP + +NLL+KR+ALRRSLEMQR+GS+KFF
Sbjct: 640 IIIYRGKNYKRPSIKLAKNLLTKREALRRSLEMQRIGSMKFF 681
>gi|449441730|ref|XP_004138635.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 760
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/712 (52%), Positives = 475/712 (66%), Gaps = 74/712 (10%)
Query: 3 TAPWMRSPIVLQP----DEIIKPSKPKTKKSFKKTDKGLTAK---ESGV--RGKQAMKKI 53
TAPWM++P+ LQP +E + P+ PK + + + ++ +SG+ GK AM++I
Sbjct: 62 TAPWMKAPLHLQPQQQEEEGVDPANPKRRNGSDGSGRDKCSRALGDSGIDKTGKYAMRRI 121
Query: 54 IENIEKLQKDQILDETQKKVMEKFEFKG----CFEENVSHEEDLRGGFGGKVPWLREDR- 108
++I KL+++ L ET+ K +E+ EF G FEE+ G ++PW ++D
Sbjct: 122 AKSIGKLRRNGDLGETRMK-LEEVEFGGFDLEGFEES---------GTRRRMPWEKDDDG 171
Query: 109 FVFRRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRN 168
V RRMKK + VT AE LD LLERLK EA KM KWVKV K GVT+ VV +I+ W RN
Sbjct: 172 IVLRRMKK-KTVTSAELNLDRVLLERLKGEASKMEKWVKVNKVGVTQDVVNQIQFMWERN 230
Query: 169 ELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQ 228
ELAM+KFDVPL RNMDRAREI+E+KTGG+V+W+KK+A VVYRG ++K + +
Sbjct: 231 ELAMLKFDVPLSRNMDRAREIVEMKTGGMVVWSKKNALVVYRGCNYPLNLKHSTK----K 286
Query: 229 EAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGE-ENSLPTSIFMDKNLR-IDKSL 286
+ +S + +E + S + L+++ + DGE E + + +NL+ + SL
Sbjct: 287 QVHISPQNPVKVETDTHFSLSGHYESGLNRSINDNDGEWEEASSFFLIRHENLQPLSGSL 346
Query: 287 YEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELT 346
YERE DRLLD LGPRF+DWWM KPLPVD D+LPEVVPG+ PPFR PP + LTD L
Sbjct: 347 YERETDRLLDDLGPRFIDWWMHKPLPVDADMLPEVVPGYMPPFRRCPPYTKQNLTDAGLQ 406
Query: 347 YLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKA 406
+LRKLAH LPTHFVLGRNR LQGLA +ILKLWEKS++AKI +KWG+PNTDNEQMA ELK
Sbjct: 407 HLRKLAHSLPTHFVLGRNRKLQGLAASILKLWEKSMIAKIALKWGVPNTDNEQMALELK- 465
Query: 407 SLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQ 466
+LTGG LLLRNKF+IILYRG DFLP GV + I++RE ELQ
Sbjct: 466 --------------------NLTGGTLLLRNKFVIILYRGNDFLPVGVADSIIQREVELQ 505
Query: 467 ICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAE 526
Q HEE +RLKA E F E +E+ KAGTLS+F++I + DL G+ E LQ EAE
Sbjct: 506 RWQLHEENSRLKASEFFCFDTENMEERGKAGTLSDFKDITVGYEDLSTGSTESRLQAEAE 565
Query: 527 IEDLERELRKQERKLLL----------------------EQDPDLEMITEEERQCLHKIG 564
+ R LR QER+L + E D D E+IT EER C K+G
Sbjct: 566 KGKIIRGLRMQERRLKILNFKVEKSTKELTKLNASWRRVEPDADQELITNEERICFRKMG 625
Query: 565 MKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILI 624
+K++S L LGRRGVFDGVIEGLHQHWK+REV +VIT Q+ F QV YTAK L AESGGIL+
Sbjct: 626 LKMDSCLTLGRRGVFDGVIEGLHQHWKHREVVKVITMQRAFNQVNYTAKLLEAESGGILV 685
Query: 625 SVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKFF 676
SVDKLKEG+AIII+RGKNY+RPL +++NLL+KR+AL RSLEMQR+GSLKFF
Sbjct: 686 SVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIGSLKFF 737
>gi|449490080|ref|XP_004158502.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 760
Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/720 (52%), Positives = 471/720 (65%), Gaps = 90/720 (12%)
Query: 3 TAPWMRSPIVLQP----DEIIKPSKPKTKKSFKKTDKGLTAK---ESGV--RGKQAMKKI 53
TAPWM++P+ LQP +E + P+ PK + + + ++ +SG+ GK AM++I
Sbjct: 62 TAPWMKAPLHLQPQQQEEEGVDPANPKRRNGSDGSGRDKCSRALGDSGIDKTGKYAMRRI 121
Query: 54 IENIEKLQKDQILDETQKKVME----KFEFKGCFEENVSHEEDLRGGFGGKVPWLREDR- 108
++I KL+++ L ET+ K+ E F+ +G FEE+ G ++PW ++D
Sbjct: 122 AKSIGKLRRNGDLGETRMKLEEVEFGDFDLEG-FEES---------GTRRRMPWEKDDDG 171
Query: 109 FVFRRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRN 168
V RRMKK + VT AE LD LLERLK EA KM KWVKV K GVT+ VV +I+ W RN
Sbjct: 172 IVLRRMKK-KTVTSAELNLDRVLLERLKGEASKMEKWVKVNKVGVTQDVVNQIQFMWERN 230
Query: 169 ELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRG--------DGSKSSVKM 220
ELAM+KFDVPL RNMDRAREI+E+KTGG+V+W+KK+A V+YRG +K V +
Sbjct: 231 ELAMLKFDVPLSRNMDRAREIVEMKTGGMVVWSKKNALVIYRGCNYPLNLKHSTKKQVHI 290
Query: 221 CPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGE-ENSLPTSIFMDKN 279
P++ E S H E +N S I N DGE E + + +N
Sbjct: 291 SPQNPVKVETDTHFSLSGHYESGLNRS-INDN-----------DGEWEEASSFFLIRHEN 338
Query: 280 LR-IDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARS 338
L+ + SLYERE DRLLD LGPRF+DWWM KPLPVD D+L EVVPG+ PPFR PP +
Sbjct: 339 LQPLSGSLYERETDRLLDDLGPRFIDWWMHKPLPVDADMLQEVVPGYMPPFRRCPPYTKQ 398
Query: 339 KLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNE 398
LTD L +LRKLAH LPTHFVLGRNR LQGLA +ILKLWEKS++AKI +KWG+PNTDNE
Sbjct: 399 NLTDAGLQHLRKLAHSLPTHFVLGRNRKLQGLAASILKLWEKSMIAKIALKWGVPNTDNE 458
Query: 399 QMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLI 458
QMA ELK +LTGG LLLRNKF+IILYRG DFLP GV + I
Sbjct: 459 QMALELK---------------------NLTGGTLLLRNKFVIILYRGNDFLPVGVADSI 497
Query: 459 VERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNRE 518
++RE ELQ Q HEE +RLKA E F E +E+ KAGTLS+F++I + DL G+ E
Sbjct: 498 IQREVELQRWQLHEENSRLKASEFFCFDTENMEERGKAGTLSDFKDITVGYEDLSTGSTE 557
Query: 519 FELQLEAEIEDLERELRKQERKLLL----------------------EQDPDLEMITEEE 556
LQ EAE + R LR QER+L + E D D E+IT EE
Sbjct: 558 SRLQAEAEKXKIIRGLRMQERRLKILNFKVEKSTKELTKLNASWRRVEPDADQELITNEE 617
Query: 557 RQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLV 616
R C K+G+K++S L LGRRGVFDGVIEGLHQHWK+REV +VIT Q+ F QV YTAK L
Sbjct: 618 RICFRKMGLKMDSCLTLGRRGVFDGVIEGLHQHWKHREVVKVITMQRAFNQVNYTAKLLE 677
Query: 617 AESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKFF 676
AESGGIL+SVDKLKEG+AIII+RGKNY+RPL +++NLL+KR+AL RSLEMQR+GSLKFF
Sbjct: 678 AESGGILVSVDKLKEGYAIIIFRGKNYKRPLHSVSKNLLTKRKALSRSLEMQRIGSLKFF 737
>gi|297807647|ref|XP_002871707.1| ATCRS1/CRS1 [Arabidopsis lyrata subsp. lyrata]
gi|297317544|gb|EFH47966.1| ATCRS1/CRS1 [Arabidopsis lyrata subsp. lyrata]
Length = 727
Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/737 (49%), Positives = 472/737 (64%), Gaps = 145/737 (19%)
Query: 1 MPTAPWMRSPIVLQPDEIIKPSK-PKTKKSFKKTDKGLTAKESGVRGKQAMKKIIENIEK 59
+PTAPWM+ P++L+PDEI+ K K +K +KT K L +ESGVRGK+AMKKI+ N+EK
Sbjct: 52 VPTAPWMKGPLLLRPDEIVDTEKRNKPRKVEEKTFKALNRRESGVRGKKAMKKIVRNVEK 111
Query: 60 LQKDQILDETQKKVMEKFEFKGCFEENVSHEEDLRGGFGGKVPWLRED-RFVFRRMKKER 118
L + +ET + +FE+ G E + ++ FGGK+PW RE+ RF+ RRMKKER
Sbjct: 112 LDEGSDSEETHMDDLSEFEYLGRISEKIESKDR----FGGKMPWDREEERFIMRRMKKER 167
Query: 119 MVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVP 178
+ T AE +LD LL RL+ EA KMRKWV V+KAGVTE+VV EIRL W+ ELAMV+FDVP
Sbjct: 168 VPTTAELILDEGLLNRLRREASKMRKWVNVRKAGVTETVVNEIRLIWKLKELAMVRFDVP 227
Query: 179 LCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTHL 238
LCRNM+RA+EI+E+KTGGLV+ +KK+ VVYRG S SS
Sbjct: 228 LCRNMERAQEIIEMKTGGLVVLSKKEFLVVYRGGPSYSS--------------------- 266
Query: 239 HLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGL 298
++ RS +D I SLYERE DRLLDGL
Sbjct: 267 ------------------EETRSGQD----------------EISSSLYEREADRLLDGL 292
Query: 299 GPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTH 358
GPR++DWWM +P PVD DLLP+VV G++ P R PP+ R+KL+D+ELTYLR +A LP H
Sbjct: 293 GPRYLDWWMRRPFPVDADLLPQVVNGYRTPSRRCPPNTRAKLSDEELTYLRNIAQALPFH 352
Query: 359 FVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFS 418
FVLGRN GLQGLA+AI+KLWEK ++AKI +KWG NT+NE+MA+ELK
Sbjct: 353 FVLGRNHGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELK------------- 399
Query: 419 DDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLK 478
HLTGGVL+LRNK+LIILYRGKDFL V +L+ +RER L+ Q+ EE R
Sbjct: 400 --------HLTGGVLILRNKYLIILYRGKDFLSDEVTDLVDDRERLLRGYQHFEETKREG 451
Query: 479 AIETFHLPDE--PLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLERELRK 536
IE + + L++TSK+GTL EFQ +Q FG+++ N L+ EAE LE+EL+
Sbjct: 452 DIEILEVVTDGKQLKETSKSGTLLEFQELQRKFGEMETRN----LETEAEKARLEKELKS 507
Query: 537 QERKLLL----------------------EQDPDLEMITEEERQCLHKIGMKINSNLL-- 572
QE KL + E+D D+E+ T EER+CL +IG+K++S+L+
Sbjct: 508 QEHKLSILKSKIEKSTMELFKLNSLWKPSERDDDIEIFTNEERECLRRIGLKMSSSLVLG 567
Query: 573 --------------------------------LGRRGVFDGVIEGLHQHWKYREVARVIT 600
LGRRGVF G++EGLHQHWK+REVA+VIT
Sbjct: 568 RSNRIHSCLLLIPYPLAMRLIYINFIFVFVSFLGRRGVFVGIMEGLHQHWKHREVAKVIT 627
Query: 601 KQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRP-LKLMTQNLLSKRQ 659
QK+F++V+YTAKSL AES G+LIS++KLKEGHAI+IYRGKNY+RP KLM QNLL+KR+
Sbjct: 628 MQKIFSRVVYTAKSLEAESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRK 687
Query: 660 ALRRSLEMQRLGSLKFF 676
AL+RS+ MQRLGSLKFF
Sbjct: 688 ALQRSVAMQRLGSLKFF 704
>gi|296087258|emb|CBI33632.3| unnamed protein product [Vitis vinifera]
Length = 529
Score = 560 bits (1443), Expect = e-156, Method: Compositional matrix adjust.
Identities = 282/417 (67%), Positives = 322/417 (77%), Gaps = 43/417 (10%)
Query: 282 IDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLT 341
++ SLYERE DRLLDGLGPRF+DWW KPLPVD DLLPEV+PGF+PPFRLSPP RSKLT
Sbjct: 65 VNGSLYEREADRLLDGLGPRFIDWWRPKPLPVDADLLPEVLPGFRPPFRLSPPQTRSKLT 124
Query: 342 DDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMA 401
DDELTYLRKLA+ LPTHFVLGRNR LQGLA AILKLWEKSL+ KI +KWGIPNT NEQMA
Sbjct: 125 DDELTYLRKLAYALPTHFVLGRNRKLQGLAAAILKLWEKSLIVKIAIKWGIPNTKNEQMA 184
Query: 402 NELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVER 461
NELK LTGGVLLLRNKF IILYRGKDFLPC V NLIVER
Sbjct: 185 NELKC---------------------LTGGVLLLRNKFFIILYRGKDFLPCRVANLIVER 223
Query: 462 ERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFEL 521
E E + CQ EE ARLKAIET + D+PL TS GTLSEFQNI+++F LK GN E E+
Sbjct: 224 EMEFKGCQIREEDARLKAIETSFVTDKPLANTSTTGTLSEFQNIETEFRGLKDGNTEIEV 283
Query: 522 QLEAEIEDLERELRKQERKLLL----------------------EQDPDLEMITEEERQC 559
+LEAE E LE+EL+KQER L + + D D EMITEEER+C
Sbjct: 284 ELEAEKERLEKELKKQERNLFILKRKIERSAKVLAKLNSAWRPADHDADKEMITEEEREC 343
Query: 560 LHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAES 619
KIG K++S+LLLGRRGVFDGVIEGLHQHWK+RE+ +VIT Q+ F+QV+YTAK L +ES
Sbjct: 344 FRKIGQKMDSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLESES 403
Query: 620 GGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKFF 676
GG+L+S+DKLKEGHAIIIYRGKNYRRP+KL+ +NLL+KR+AL RSLEMQR+GSLKFF
Sbjct: 404 GGVLVSIDKLKEGHAIIIYRGKNYRRPIKLVPKNLLTKREALNRSLEMQRIGSLKFF 460
>gi|242078893|ref|XP_002444215.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
gi|241940565|gb|EES13710.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
Length = 728
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 311/691 (45%), Positives = 396/691 (57%), Gaps = 77/691 (11%)
Query: 21 PSKPKTKKSFKKTDKGLTAKESGVRGKQAMKKIIENIEKLQKDQILDETQ---KKVMEKF 77
P KK+ K T K LTA G R +A+ II + L+ +
Sbjct: 53 PKSAPAKKNTKTTAKPLTAGVPGGRTHRAVLGIIRRVRSLELSDAPSASSVHDSNAGAAA 112
Query: 78 EFKGCFEENVSHE---EDLRGGFGGKVPWL--RED--RFVFRRMKKERMVTKAETMLDGE 130
F E + E E + VPW R++ + RR KK R T+AET L+ +
Sbjct: 113 AFHLPIEPSPPREPGQEVVEKAKPRAVPWAAARDEGLKVALRREKKPRKPTRAETELETD 172
Query: 131 LLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNE-LAMVKFDVPLCRNMDRAREI 189
L+RL+ AR M +W + KKAGVT+ VV E+R W E LA V+ PL R+MDRAREI
Sbjct: 173 ELDRLRRLARGMGRWARAKKAGVTDEVVEEMRREWASGEELAAVRIVEPLRRSMDRAREI 232
Query: 190 LELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWI 249
LE+KTGGLV+WTK D H VY+G + + +K +H + S +
Sbjct: 233 LEIKTGGLVVWTKGDIHFVYKGSKYQQN---------------AKHSHTFVTNVHKGSLV 277
Query: 250 KSNTATLDQNRSLKDGEENSLPTSIFMDKNLR-IDKSLYEREGDRLLDGLGPRFVDWWMW 308
K N R D SI K+ + +LYERE +RLLD LGPRFVDWW
Sbjct: 278 KQNV------RGEADDAFQENDQSICGQKDEEPVKGTLYEREVNRLLDTLGPRFVDWWWD 331
Query: 309 KPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQ 368
PLPVD DLLPE +PGFK PFR PP R L D+ELTYLRKLA PLPTHF LGRN LQ
Sbjct: 332 TPLPVDADLLPEFIPGFKTPFRQCPPGVRPTLADEELTYLRKLARPLPTHFALGRNTRLQ 391
Query: 369 GLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHL 428
GLA AILKLWEKSL+AKI VK GI NT+NEQMA LK HL
Sbjct: 392 GLAAAILKLWEKSLIAKIAVKVGIQNTNNEQMAWNLK---------------------HL 430
Query: 429 TGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPDE 488
TGG ++LRNK +ILYRGKDFLP GV +++RE ++ Q EE ARLKA+++ + E
Sbjct: 431 TGGTVILRNKDFVILYRGKDFLPGGVAQTVIQREAQVDDEQVKEEEARLKAVDSLQMVGE 490
Query: 489 -PLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLERELRKQERKLLL---- 543
++ S GT E+++ +DF ++LEAE LE+EL+ E KL +
Sbjct: 491 LSSDEESSVGTFREYKDFHADFVHANTEKSNTMIELEAEKYRLEKELKDHEWKLSILNKK 550
Query: 544 ------------------EQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEG 585
EQ D E++TEEE+ +IG K++ +LLGRRG+FDGVIE
Sbjct: 551 IERSNQALAKLRSSWSPSEQSADRELLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEE 610
Query: 586 LHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRR 645
+HQHWK++EV +VITKQ Q++YTA L E+GGILI+V+KL HAII+YRGKNYRR
Sbjct: 611 IHQHWKHKEVVKVITKQNQARQIMYTANLLEVETGGILIAVEKLTTSHAIILYRGKNYRR 670
Query: 646 PLKLMTQNLLSKRQALRRSLEMQRLGSLKFF 676
P K NLL+KR+ALRRSLE+QR GS+K+F
Sbjct: 671 PAKSSFSNLLTKREALRRSLEVQRRGSMKYF 701
>gi|326492786|dbj|BAJ90249.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 312/709 (44%), Positives = 410/709 (57%), Gaps = 64/709 (9%)
Query: 2 PTAPWMRSPIVLQPDEIIKPSKPKTKKSFKKTDKGLTAKESGVRGKQAMKKIIENIEKLQ 61
P P SP QP E SKP ++ ++T +GV G + + ++ I +++
Sbjct: 25 PKTPATVSPS--QPVEAPPSSKPPQRQ--RETSTSTNPLSAGVPGGRTRRAVLGIIRRVR 80
Query: 62 KDQILDETQKKVMEKFE-----FKGCFEENVSHEEDLRGGFGGKVPW--LRED--RFVFR 112
++ D K + F EE EE G G PW R++ + R
Sbjct: 81 SLELSDPPSPKPIHSTRSAVPLFHLPIEE-CRGEEAGGDGNGRPAPWSAARDEGLKAALR 139
Query: 113 RMKKERMVTKAETMLDGELLERLKDEARKMRK-WVKVKKAGVTESVVFEIRLAWRRN-EL 170
R KK R T AE +LD L+RL+ AR W++ KKAGVT+ VV ++ W EL
Sbjct: 140 RQKKARQPTPAERLLDPAELDRLRRAARGTGDGWLRAKKAGVTDEVVEDVCRVWSGGQEL 199
Query: 171 AMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRS-ADDQE 229
A V+ PL R MDRAREILE+K+GGLV+WTK D H VYRG ++K +S AD Q
Sbjct: 200 AAVQVVEPLRRCMDRAREILEIKSGGLVVWTKGDVHFVYRGSSYLENIKHRQKSIADIQR 259
Query: 230 APLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYER 289
PL K T + K + S + +T D + G + SL + + ++ +LYER
Sbjct: 260 VPLEKCTAPGPQWK-HESNAEPSTNHNDDAHGVFRGIDPSLAVHAYEEP---VEGTLYER 315
Query: 290 EGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLR 349
E +RLLD LGPRFVDWW PLPVD DLLPEVVPGFK PFR PP R L D+ELTYLR
Sbjct: 316 EVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVRPTLADEELTYLR 375
Query: 350 KLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLA 409
KLA PLPTHF LGRN LQGLA A+LKLWEKSL+AKI VK GI NT+NEQMA LK
Sbjct: 376 KLARPLPTHFALGRNTRLQGLAAAVLKLWEKSLIAKIAVKVGIQNTNNEQMAWNLK---- 431
Query: 410 KWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQ 469
HLTGG ++LRNK +ILYRGKDFLP GV+ ++E+E + Q
Sbjct: 432 -----------------HLTGGTIILRNKDFVILYRGKDFLPGGVKQSVIEQEARVYAQQ 474
Query: 470 NHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIED 529
EE ARL +++ + + S G+ E+Q+ Q + N ++LEAE
Sbjct: 475 VKEEEARLMVMDSLKMFAGLPSEESSVGSFREYQDFQLNHVQETTENNMALIELEAEKHR 534
Query: 530 LERELRKQERKLLL----------------------EQDPDLEMITEEERQCLHKIGMKI 567
LE+EL+ QER+L + EQ D E++TEEER KIG+K+
Sbjct: 535 LEKELKDQERRLFILTKKIERSNEALAKLHNSWNPSEQSADKELLTEEERMIFRKIGLKM 594
Query: 568 NSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVD 627
+ ++LLGRRG+FDGVIE +HQHWK++E+ +VITKQ Q+ YT+ L E+GG+LI+
Sbjct: 595 DEHVLLGRRGIFDGVIEEIHQHWKHKEIVKVITKQNQAYQITYTSMLLEVETGGMLIATQ 654
Query: 628 KLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKFF 676
KL HAII+YRGKNY RP K NLL+KR+ALRRS+E+QR GS+K++
Sbjct: 655 KLTNSHAIILYRGKNYHRPTKSSPSNLLTKREALRRSVEVQRRGSMKYY 703
>gi|357454755|ref|XP_003597658.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355486706|gb|AES67909.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 880
Score = 510 bits (1313), Expect = e-141, Method: Compositional matrix adjust.
Identities = 289/552 (52%), Positives = 365/552 (66%), Gaps = 75/552 (13%)
Query: 175 FDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSK 234
D PL + A +KTGGLV+W+KKDA VVYRG K + K + D P S+
Sbjct: 281 LDYPLSGHFGHALYAQLMKTGGLVVWSKKDALVVYRGCNYKLTSKGSTK-IDTGYIP-SR 338
Query: 235 STHLHLEKKVNVSWIKSNTATLDQNRSLKD------GEENSLPTSIFMDKNLR-IDKSLY 287
T+ + V ++ I + + +RS + ++SL T I D N + + SLY
Sbjct: 339 KTNSYEMNGVKLATI-GDLYRAESDRSTSELPSWNADHKHSLSTDIH-DMNYQPANGSLY 396
Query: 288 EREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTY 347
ERE DRLLDGLGPRF+DWWM KPLPVD DLLPEVVPGF+PP R+ PP A +KLTD ELTY
Sbjct: 397 ERECDRLLDGLGPRFIDWWMHKPLPVDADLLPEVVPGFEPPLRICPPHASAKLTDGELTY 456
Query: 348 LRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKAS 407
R+++HPLPTHFVLGRNRGLQGLA AILKLW KS +AKI +K+G+ NTDNE MANELK
Sbjct: 457 FRRISHPLPTHFVLGRNRGLQGLAAAILKLWHKSHIAKIAIKYGVQNTDNETMANELK-- 514
Query: 408 LAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQI 467
LTGGVLLLRNKF I+LYRGKDFLP V +L+ RE EL+
Sbjct: 515 -------------------RLTGGVLLLRNKFYILLYRGKDFLPRRVADLVERRELELKS 555
Query: 468 CQNHEEGARLKAIETFHLPDE-PL-EKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEA 525
CQ EE AR+KAI+ F DE PL + TS +GTL+EF+NIQ+ ++K N + + LEA
Sbjct: 556 CQLDEEVARMKAIQAFSSIDEFPLPQGTSTSGTLTEFRNIQNKLDEMKEVNVDLSIPLEA 615
Query: 526 EIEDLERELRKQERKLLL----------------------EQDPDLEMITEEERQCLHKI 563
EI LE+EL++Q+RK + +D DLE++T+EER+C K+
Sbjct: 616 EIYRLEKELKEQQRKAFILNKKIERSTMELSKLNAAWKPSGEDIDLEIMTDEERECFRKM 675
Query: 564 GMKINSNLLL------------GRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYT 611
G+K+ S L+L GRRGVFDGV+EGLHQHWK+REVA+VIT Q+L ++VIYT
Sbjct: 676 GLKMRSCLVLGKAISLHSTTSAGRRGVFDGVLEGLHQHWKHREVAKVITMQRLISRVIYT 735
Query: 612 AKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLG 671
++ L ESGGIL+SVD+LKEG+AIIIYRGKNY RP + + +NLL+KR+ALRRSLEMQR+G
Sbjct: 736 SQFLERESGGILVSVDQLKEGYAIIIYRGKNYSRPSEKIAKNLLTKRKALRRSLEMQRIG 795
Query: 672 -------SLKFF 676
SLKFF
Sbjct: 796 VSDFHSFSLKFF 807
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/191 (47%), Positives = 130/191 (68%), Gaps = 14/191 (7%)
Query: 2 PTAPWMRSPIVLQPDEIIKPS-KPKTKKSFKKTDKGLTAKESGVRGKQAMKKIIENIEKL 60
PT PW+++P++LQP +++ + +PK + +DK LT KE +RGK+A+KKI +E L
Sbjct: 53 PTPPWIKAPLLLQPHQLLNSNVEPKQRDH---SDKALTGKE--LRGKKALKKIAHKVESL 107
Query: 61 QKDQILDETQKKVMEKFEFKGCFEENVSHEEDLRGGFGGKVPWLREDRFVFRRMKKERMV 120
K Q +QK +E F G E + + E +R ++PW R+++ F ++KKE++V
Sbjct: 108 HKTQTQMGSQK--VENF---GSLENLMENVEVVRKE---RMPWERDEKVDFLKVKKEKIV 159
Query: 121 TKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLC 180
T A+ LD LL+RL+ EA MR WVKVKKAGVT+ VV +I+ WR NELAMVKFD+PLC
Sbjct: 160 TAADLTLDKVLLQRLRSEAAIMRIWVKVKKAGVTQDVVNQIKRTWRTNELAMVKFDIPLC 219
Query: 181 RNMDRAREILE 191
+NMDRAREI+E
Sbjct: 220 QNMDRAREIVE 230
>gi|326499694|dbj|BAJ86158.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 311/709 (43%), Positives = 409/709 (57%), Gaps = 64/709 (9%)
Query: 2 PTAPWMRSPIVLQPDEIIKPSKPKTKKSFKKTDKGLTAKESGVRGKQAMKKIIENIEKLQ 61
P P SP QP E SKP ++ ++T +GV G + + ++ I +++
Sbjct: 25 PKTPATVSPS--QPVEAPPSSKPPQRQ--RETSTSTNPLSAGVPGGRTRRAVLGIIRRVR 80
Query: 62 KDQILDETQKKVMEKFE-----FKGCFEENVSHEEDLRGGFGGKVPW--LRED--RFVFR 112
++ D K + F EE EE G G PW R++ + R
Sbjct: 81 SLELSDPPSPKPIHSTRSAVPLFHLPIEE-CRGEEAGGDGNGRPAPWSAARDEGLKAALR 139
Query: 113 RMKKERMVTKAETMLDGELLERLKDEARKMRK-WVKVKKAGVTESVVFEIRLAWRRN-EL 170
R KK R T AE +LD L+RL+ AR W++ KKAGVT+ VV ++ W EL
Sbjct: 140 RQKKARQPTPAERLLDPAELDRLRRAARGTGDGWLRAKKAGVTDEVVEDVCRVWSGGQEL 199
Query: 171 AMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRS-ADDQE 229
A V+ PL R MDRAREILE+K+GGLV+WTK D H VYRG ++K +S AD Q
Sbjct: 200 AAVRVVEPLRRCMDRAREILEIKSGGLVVWTKGDVHFVYRGSSYLENIKHRQKSIADIQR 259
Query: 230 APLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYER 289
PL K T + K + S + +T D + G + SL + + ++ +LYER
Sbjct: 260 VPLEKCTAPGPQWK-HESNAEPSTNHNDDAHGVFRGIDPSLAVHAYEEP---VEGTLYER 315
Query: 290 EGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLR 349
E +RLLD LGPRFVDWW PLPVD DLLPEVVPGFK PFR PP R L D+ELTYLR
Sbjct: 316 EVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVRPTLADEELTYLR 375
Query: 350 KLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLA 409
KLA PLPTHF LGRN LQGLA A+LKLWEKSL+AKI VK GI NT+NEQMA LK
Sbjct: 376 KLARPLPTHFALGRNTRLQGLAAAVLKLWEKSLIAKIAVKVGIQNTNNEQMAWNLK---- 431
Query: 410 KWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQ 469
HLTGG ++LRNK +ILYRGKDFLP GV+ ++E+E + Q
Sbjct: 432 -----------------HLTGGTIILRNKDFVILYRGKDFLPGGVKQSVIEQEARVYAQQ 474
Query: 470 NHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIED 529
EE ARL +++ + + S G+ E+Q+ Q + N ++LEAE
Sbjct: 475 VKEEEARLMVMDSLKMFAGLPSEESSVGSFREYQDFQLNHVQETTENNMALIELEAEKHR 534
Query: 530 LERELRKQERKLLL----------------------EQDPDLEMITEEERQCLHKIGMKI 567
LE+EL+ QER+L + EQ D E++TEEER KIG+K+
Sbjct: 535 LEKELKDQERRLFILTKKIERSNEALAKLHNSWNPSEQSADKELLTEEERMIFRKIGLKM 594
Query: 568 NSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVD 627
+ ++LLGRRG+FDGVIE +HQHWK++E+ +VITKQ Q+ YT+ L E+GG+LI+
Sbjct: 595 DEHVLLGRRGIFDGVIEEIHQHWKHKEIVKVITKQNQAYQITYTSMLLEVETGGMLIATQ 654
Query: 628 KLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKFF 676
KL HAII+YRGKNY RP K NL +KR+ALRRS+E+QR GS+K++
Sbjct: 655 KLTNSHAIILYRGKNYHRPTKSSPSNLRTKREALRRSVEVQRRGSMKYY 703
>gi|357145812|ref|XP_003573775.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 730
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 296/613 (48%), Positives = 367/613 (59%), Gaps = 79/613 (12%)
Query: 101 VPW--LRED--RFVFRRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTES 156
VPW R++ + V RR KK R T+AE L LLERL+ AR M +W + KKAGVT+
Sbjct: 133 VPWSAARDEHLKVVLRREKKVREPTRAERELGPALLERLRRAARGMDRWARAKKAGVTDE 192
Query: 157 VVFEIRLAWRR-NELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSK 215
VV ++R W ELA V+ PL R MDRAREILE+KTGGLV+WTK D H VYRG
Sbjct: 193 VVEDVRSEWSSGQELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTKGDIHFVYRGSDYV 252
Query: 216 SSVKMCPR-SADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSI 274
++K AD Q+ + + KSN L G+ N
Sbjct: 253 HNMKYSHNFVADIQKVRTPQEKY------------KSNVELL--------GKHNGKAKGA 292
Query: 275 FMDKNLRID---------KSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGF 325
F +K+ ID +LYERE +RLLD LGPRF+DWW PLPVD DLLPEVV GF
Sbjct: 293 FREKDSSIDIQTYEEPVKGTLYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPEVVLGF 352
Query: 326 KPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAK 385
K PFR PP R L D+ELTYLRKLA PLP HF LGRN LQGLA AILKLWEKSLVAK
Sbjct: 353 KTPFRQCPPGVRPTLADEELTYLRKLARPLPAHFALGRNTKLQGLAAAILKLWEKSLVAK 412
Query: 386 ITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYR 445
I VK GI NT+NEQMA LK HLTGG ++LRNK IILYR
Sbjct: 413 IAVKVGIENTNNEQMAWNLK---------------------HLTGGTIILRNKDFIILYR 451
Query: 446 GKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNI 505
GKDFLP GV+ +++ E ++ Q EE ARL E+ + S AGT E+Q+
Sbjct: 452 GKDFLPAGVKQSVIQHEAQVDAQQVKEEEARLSGTESLQMFAGLPSVESSAGTFREYQDF 511
Query: 506 QSDFGDLKMGNREFELQLEAEIEDLERELRKQERKLLL---------------------- 543
Q + N + ++LEAE LE+EL+ QER+L +
Sbjct: 512 QVNQAHETTINNKAMIELEAEKHRLEKELKDQERRLFILTKKIERSNQALAKLHSSWNPS 571
Query: 544 EQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQK 603
EQ D E++TEEER KIG+K++ ++LLGRRGVFDGVIE +HQHWK++E+ +VITKQ
Sbjct: 572 EQSADKELLTEEERMIFRKIGLKMDEHVLLGRRGVFDGVIEEIHQHWKHKEIVKVITKQN 631
Query: 604 LFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRR 663
Q+ YT+ L E+GG+LI+ KL HAII+YRGKNYRRP K NLL+KR+ALRR
Sbjct: 632 QSYQITYTSMLLEVETGGVLIATQKLPHSHAIILYRGKNYRRPEK-SPSNLLTKREALRR 690
Query: 664 SLEMQRLGSLKFF 676
S+E+QR GS+K++
Sbjct: 691 SVEVQRRGSMKYY 703
>gi|414870652|tpg|DAA49209.1| TPA: chloroplast RNA splicing1 [Zea mays]
Length = 715
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 308/698 (44%), Positives = 393/698 (56%), Gaps = 98/698 (14%)
Query: 18 IIKPSKPKTKKSFKKTDKGLTAKESGVRGKQAMKKIIENIEKLQKDQILDETQKKVMEKF 77
I P +K+ K K LTA G R +A+ II + L+
Sbjct: 50 IDSPKPAPARKNTKTAAKPLTAGVPGGRTHRAVLGIIRRVRSLELSDAPSPNSVHTSNSG 109
Query: 78 EFKGCFE------------ENVSHEEDLRGGFGGKVPWL--RED--RFVFRRMKKERMVT 121
F + V +E R VPW R++ + RR KK R T
Sbjct: 110 AAAAAFHLTIELSPPREPGQYVVEKEKSRA-----VPWAAARDEGLKVALRREKKPREPT 164
Query: 122 KAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNE-LAMVKFDVPLC 180
+AET L+ L RL+ AR + +W + KKAGVT+ VV E+R W E LA V+ PL
Sbjct: 165 RAETELETHELHRLRRLARGIGRWARAKKAGVTDEVVKEVRREWASGEELAAVRIVEPLR 224
Query: 181 RNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTHLHL 240
R+MDRAREILE+KTGGLV+WTK D H VYRG + + +K +H L
Sbjct: 225 RSMDRAREILEIKTGGLVVWTKGDMHFVYRGSKYQQN---------------AKHSHTFL 269
Query: 241 EKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGP 300
+ + A + ++S+ G+++ P + +LYERE +RLLD LGP
Sbjct: 270 TN------VHKDDAFQENDQSI-CGQKDEEP----------VKGTLYEREVNRLLDTLGP 312
Query: 301 RFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFV 360
RFVDWW PLPVD DLLPE VPGFK P+RL PP R L D+ELTYLRKLA LPTHF
Sbjct: 313 RFVDWWWDTPLPVDADLLPEFVPGFKTPYRLCPPGVRPTLADEELTYLRKLARLLPTHFA 372
Query: 361 LGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDD 420
LGRN LQGLA AILKLWEKSL+AKI VK GI NT+NEQMA LK
Sbjct: 373 LGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNLK--------------- 417
Query: 421 GVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAI 480
HLTGG ++LRNK IILYRGKDFLP GV +++RE ++ Q EE ARLKA+
Sbjct: 418 ------HLTGGTVILRNKDFIILYRGKDFLPGGVAQTVIQREAQVHDEQVKEEEARLKAV 471
Query: 481 ETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLERELRKQERK 540
++ + E L + S GT E+Q + F N ++LEAE LE+EL+ E K
Sbjct: 472 DSLQMVGE-LSEESSLGTFREYQGFHAKFVHENTENSNTMIELEAEKYRLEKELKDHEWK 530
Query: 541 LLL----------------------EQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGV 578
L + EQ D E +TEEE+ +IG K++ +LLGRRG+
Sbjct: 531 LSVLNKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRRGI 590
Query: 579 FDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIY 638
FDGVIE +HQHWK++EV +VITKQ Q++Y A L E+GGILI+V+KL HAII+Y
Sbjct: 591 FDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAIILY 650
Query: 639 RGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKFF 676
RGKNYRRP K NLL+KR+ALRRS+E+QR GS+K+F
Sbjct: 651 RGKNYRRPAKSSFSNLLTKREALRRSIEVQRRGSMKYF 688
>gi|222640429|gb|EEE68561.1| hypothetical protein OsJ_27045 [Oryza sativa Japonica Group]
Length = 725
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/608 (46%), Positives = 363/608 (59%), Gaps = 64/608 (10%)
Query: 96 GFGGKVPWL----REDRFVFRRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKA 151
G VPW E + V RR KK R+ T+AET L+ LERL+ AR +W + KKA
Sbjct: 120 GIRRAVPWAAARDEETKVVLRREKKTRVPTRAETELEAGELERLRRAARGKERWARAKKA 179
Query: 152 GVTESVVFEIRLAWRR-NELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYR 210
G+T+ VV E+R W + ELA V+ PL R MDRAREILE+KTGGLV+WT+ H VYR
Sbjct: 180 GITDEVVEEVRGQWAKGQELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYR 239
Query: 211 GDGSKSSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSL 270
G S ++ R D + +S + SN T KD +
Sbjct: 240 GS---SYLENAKRHRD------------FVNYNEELSPVTSNNPTSQGKYWSKDETLTND 284
Query: 271 PTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFR 330
+ I +LYERE +RLLD LGPRF+DWW PLPVD DLLPEVVP FK PFR
Sbjct: 285 NDEADDKDDKPIKGTLYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPEVVPDFKTPFR 344
Query: 331 LSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKW 390
PP R L D+ELTYLRK A PLPTHFVLGRN LQGLA AILKLWEKSL+AK+ VK
Sbjct: 345 QCPPGVRPALADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKV 404
Query: 391 GIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFL 450
GI NT++EQMA LK LTGG ++LRNK II+YRGKDFL
Sbjct: 405 GIQNTNHEQMARNLK---------------------RLTGGTVILRNKDYIIIYRGKDFL 443
Query: 451 PCGVENLIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFG 510
P GV ++ERE ++ Q EE ARLK ++ + + S GT E+Q+
Sbjct: 444 PGGVAESVIERESQVHDQQAKEEEARLKMADSLQMIVGLSSERSYVGTFREYQDFHDSHA 503
Query: 511 DLKMGNREFELQLEAEIEDLERELRKQERKLLL----------------------EQDPD 548
N F +QLEA+ LE+EL+ QE +L + ++D D
Sbjct: 504 RRTTEN-NFRIQLEAKKHRLEKELKDQEWRLSMLTKKIERSNQVLAKLHSSWSPSKKDGD 562
Query: 549 LEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQV 608
E++TEEER+ KIG+K++ ++LLGRRGVF+GVIE +HQHWK++EV +VITKQ +Q+
Sbjct: 563 RELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQI 622
Query: 609 IYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQ 668
YT+ L E+GG LI++++ HAII+YRGKNYRRP K NLL+KR+AL+RS+E+Q
Sbjct: 623 TYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKSAPSNLLTKREALQRSIEVQ 682
Query: 669 RLGSLKFF 676
R GS+K+F
Sbjct: 683 RRGSMKYF 690
>gi|115476078|ref|NP_001061635.1| Os08g0360100 [Oryza sativa Japonica Group]
gi|75132343|sp|Q6YYA3.1|CRS1_ORYSJ RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|38637564|dbj|BAD03815.1| putative CRS1 [Oryza sativa Japonica Group]
gi|113623604|dbj|BAF23549.1| Os08g0360100 [Oryza sativa Japonica Group]
Length = 725
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 283/608 (46%), Positives = 363/608 (59%), Gaps = 64/608 (10%)
Query: 96 GFGGKVPWL----REDRFVFRRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKA 151
G VPW E + V RR KK R+ T+AET L+ LERL+ AR +W + KKA
Sbjct: 120 GIRRAVPWAAARDEETKVVLRREKKTRVPTRAETELEAGELERLRRAARGKERWARAKKA 179
Query: 152 GVTESVVFEIRLAWRR-NELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYR 210
G+T+ VV E+R W + ELA V+ PL R MDRAREILE+KTGGLV+WT+ H VYR
Sbjct: 180 GITDEVVEEVRGQWAKGQELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYR 239
Query: 211 GDGSKSSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSL 270
G S ++ R D + +S + SN T KD +
Sbjct: 240 GS---SYLENAKRHRD------------FVNYNEELSPVTSNNPTSQGKYWSKDETLTND 284
Query: 271 PTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFR 330
+ I +LYERE +RLLD LGPRF+DWW PLPVD DLLPEVVP FK PFR
Sbjct: 285 NDEADDKDDKPIKGTLYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPEVVPDFKTPFR 344
Query: 331 LSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKW 390
PP R L D+ELTYLRK A PLPTHFVLGRN LQGLA AILKLWEKSL+AK+ VK
Sbjct: 345 QCPPGVRPALADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKV 404
Query: 391 GIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFL 450
GI NT++EQMA LK LTGG ++LRNK II+YRGKDFL
Sbjct: 405 GIQNTNHEQMARNLK---------------------RLTGGTVILRNKDYIIIYRGKDFL 443
Query: 451 PCGVENLIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFG 510
P GV ++ERE ++ Q EE ARLK ++ + + S GT E+Q+
Sbjct: 444 PGGVAESVIERESQVHDQQAKEEEARLKMADSLQMIVGLSSERSYVGTFREYQDFHDSHA 503
Query: 511 DLKMGNREFELQLEAEIEDLERELRKQERKLLL----------------------EQDPD 548
N F +QLEA+ LE+EL+ QE +L + ++D D
Sbjct: 504 RRTTEN-NFRIQLEAKKHRLEKELKDQEWRLSMLTKKIERSNQVLAKLHSSWSPSKKDGD 562
Query: 549 LEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQV 608
E++TEEER+ KIG+K++ ++LLGRRGVF+GVIE +HQHWK++EV +VITKQ +Q+
Sbjct: 563 RELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQI 622
Query: 609 IYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQ 668
YT+ L E+GG LI++++ HAII+YRGKNYRRP K NLL+KR+AL+RS+E+Q
Sbjct: 623 TYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKSAPSNLLTKREALQRSIEVQ 682
Query: 669 RLGSLKFF 676
R GS+K+F
Sbjct: 683 RRGSMKYF 690
>gi|162463484|ref|NP_001105008.1| chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic precursor [Zea mays]
gi|75173308|sp|Q9FYT6.1|CRS1_MAIZE RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|9837550|gb|AAG00595.1|AF290414_1 CRS1 [Zea mays]
Length = 715
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 307/698 (43%), Positives = 392/698 (56%), Gaps = 98/698 (14%)
Query: 18 IIKPSKPKTKKSFKKTDKGLTAKESGVRGKQAMKKIIENIEKLQKDQILDETQKKVMEKF 77
I P +K+ K K LTA G R +A+ II + L+
Sbjct: 50 IDSPKPAPARKNTKTAAKPLTAGVPGGRTHRAVLGIIRRVRSLELSDAPSPNSVHTSNSG 109
Query: 78 EFKGCFE------------ENVSHEEDLRGGFGGKVPWL--RED--RFVFRRMKKERMVT 121
F + V +E R VPW R++ + RR KK R T
Sbjct: 110 AAAAAFHLTIELSPPREPGQYVVEKEKSRA-----VPWAAARDEGLKVALRREKKPREPT 164
Query: 122 KAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNE-LAMVKFDVPLC 180
+AET L+ L RL+ AR + +W + KKAGVT+ VV E+R W E LA V+ PL
Sbjct: 165 RAETELETHELRRLRRLARGIGRWARAKKAGVTDEVVKEVRREWASGEELAAVRIVEPLR 224
Query: 181 RNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTHLHL 240
R+MDRAREILE+KTGGLV+WTK D H VYRG + + +K +H L
Sbjct: 225 RSMDRAREILEIKTGGLVVWTKGDMHFVYRGSKYQQN---------------AKHSHTFL 269
Query: 241 EKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGP 300
+ + A + ++S+ G+++ P + +LYERE +RLLD LGP
Sbjct: 270 TN------VHKDDAFQENDQSI-CGQKDEEP----------VKGTLYEREVNRLLDTLGP 312
Query: 301 RFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFV 360
RFVDWW PLPVD DLLPE VPG K P+RL PP R L D+ELTYLRKLA LPTHF
Sbjct: 313 RFVDWWWDTPLPVDADLLPEFVPGSKTPYRLCPPGVRPTLADEELTYLRKLARLLPTHFA 372
Query: 361 LGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDD 420
LGRN LQGLA AILKLWEKSL+AKI VK GI NT+NEQMA LK
Sbjct: 373 LGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNLK--------------- 417
Query: 421 GVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAI 480
HLTGG ++LRNK IILYRGKDFLP GV +++RE ++ Q EE ARLKA+
Sbjct: 418 ------HLTGGTVILRNKDFIILYRGKDFLPGGVAQTVIQREAQVHDEQVKEEEARLKAV 471
Query: 481 ETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLERELRKQERK 540
++ + E L + S GT E+Q + F N ++LEAE LE+EL+ E K
Sbjct: 472 DSLQMVGE-LSEESSLGTFREYQGFHAKFVHENTENSNTMIELEAEKYRLEKELKDHEWK 530
Query: 541 LLL----------------------EQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGV 578
L + EQ D E +TEEE+ +IG K++ +LLGRRG+
Sbjct: 531 LSVLNKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRRGI 590
Query: 579 FDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIY 638
FDGVIE +HQHWK++EV +VITKQ Q++Y A L E+GGILI+V+KL HAII+Y
Sbjct: 591 FDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAIILY 650
Query: 639 RGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKFF 676
RGKNYRRP K NLL+KR+ALRRS+E+QR GS+K+F
Sbjct: 651 RGKNYRRPAKSSFSNLLTKREALRRSIEVQRRGSMKYF 688
>gi|186523322|ref|NP_197122.2| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
thaliana]
gi|374095377|sp|Q9LF10.2|CRS1_ARATH RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|332004875|gb|AED92258.1| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
thaliana]
Length = 720
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 239/420 (56%), Positives = 302/420 (71%), Gaps = 50/420 (11%)
Query: 282 IDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLT 341
I SLYERE DRLLDGLGPR++DWWM +P PVD DLLPEVV G+ P R PP+ R+KLT
Sbjct: 303 ISSSLYEREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLT 362
Query: 342 DDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMA 401
D+ELTYLR +A PLP HFVLGRN GLQGLA+AI+KLWEK ++AKI +KWG NT+NE+MA
Sbjct: 363 DEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMA 422
Query: 402 NELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVER 461
+EL+ +LTGGVL+LRNK+LI+LYRGKDFL V +L+ +R
Sbjct: 423 DELR---------------------YLTGGVLILRNKYLIVLYRGKDFLSDEVADLVEDR 461
Query: 462 ERELQICQNHEEGARLKAIETFHLPD--EPLEKTSKAGTLSEFQNIQSDFGDLKMGNREF 519
ER L Q+ EE R IE + + L++T+K+GTL EFQ +Q FG++ N
Sbjct: 462 ERLLSRYQHFEETKRESDIELLEVVTNGKQLKETNKSGTLLEFQELQRKFGEMDPRN--- 518
Query: 520 ELQLEAEIEDLERELRKQERKLLL----------------------EQDPDLEMITEEER 557
L+ EAE LE+EL+ QE KL + E D D+E++T EER
Sbjct: 519 -LETEAEKARLEKELKSQEHKLSILKSKIEKSNMELFKLNSLWKPSEGDDDIEILTNEER 577
Query: 558 QCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVA 617
+CL +IG+K+NS+L+LGRRGVF GV+EGLHQHWK+REVA+VIT QKLF++V+YTAK+L
Sbjct: 578 ECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYTAKALET 637
Query: 618 ESGGILISVDKLKEGHAIIIYRGKNYRRP-LKLMTQNLLSKRQALRRSLEMQRLGSLKFF 676
ES G+LIS++KLKEGHAI+IYRGKNY+RP KLM QNLL+KR+AL+RS+ MQRLGSLKFF
Sbjct: 638 ESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRKALQRSVVMQRLGSLKFF 697
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/219 (57%), Positives = 162/219 (73%), Gaps = 6/219 (2%)
Query: 1 MPTAPWMRSPIVLQPDEIIKPSK-PKTKKSFKKTDKGLTAKESGVRGKQAMKKIIENIEK 59
+PTAPWM+ P++L+PDEI+ K K +K +KT K L +ESGVRGK+AMKKI+ N+EK
Sbjct: 83 VPTAPWMKGPLLLRPDEILDTKKRNKPRKVEEKTFKALNRRESGVRGKKAMKKIVRNVEK 142
Query: 60 LQKDQILDETQKKVMEKFEFKGCFEENVSHEEDLRGGFGGKVPWLRED-RFVFRRMKKER 118
L +D +ETQ + +FE+ G EE V ++ FGGK+PW RE+ RF+ RRMKKE
Sbjct: 143 LDEDSDSEETQMDDLSEFEYLGRIEEKVESKDR----FGGKMPWEREEERFILRRMKKES 198
Query: 119 MVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVP 178
+ T AE +LD LL RL+ EA KMRKWV V+KAGVTE VV +I+ W+ NELAMV+FDVP
Sbjct: 199 VPTTAELILDEGLLNRLRREASKMRKWVNVRKAGVTELVVNKIKSMWKLNELAMVRFDVP 258
Query: 179 LCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSS 217
LCRNM+RA+EI+E+KTGGLV+ +KK+ VVYRG S SS
Sbjct: 259 LCRNMERAQEIIEMKTGGLVVLSKKEFLVVYRGGPSYSS 297
>gi|9755828|emb|CAC01859.1| putative protein [Arabidopsis thaliana]
Length = 718
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 239/420 (56%), Positives = 302/420 (71%), Gaps = 50/420 (11%)
Query: 282 IDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLT 341
I SLYERE DRLLDGLGPR++DWWM +P PVD DLLPEVV G+ P R PP+ R+KLT
Sbjct: 301 ISSSLYEREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLT 360
Query: 342 DDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMA 401
D+ELTYLR +A PLP HFVLGRN GLQGLA+AI+KLWEK ++AKI +KWG NT+NE+MA
Sbjct: 361 DEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMA 420
Query: 402 NELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVER 461
+EL+ +LTGGVL+LRNK+LI+LYRGKDFL V +L+ +R
Sbjct: 421 DELR---------------------YLTGGVLILRNKYLIVLYRGKDFLSDEVADLVEDR 459
Query: 462 ERELQICQNHEEGARLKAIETFHLPD--EPLEKTSKAGTLSEFQNIQSDFGDLKMGNREF 519
ER L Q+ EE R IE + + L++T+K+GTL EFQ +Q FG++ N
Sbjct: 460 ERLLSRYQHFEETKRESDIELLEVVTNGKQLKETNKSGTLLEFQELQRKFGEMDPRN--- 516
Query: 520 ELQLEAEIEDLERELRKQERKLLL----------------------EQDPDLEMITEEER 557
L+ EAE LE+EL+ QE KL + E D D+E++T EER
Sbjct: 517 -LETEAEKARLEKELKSQEHKLSILKSKIEKSNMELFKLNSLWKPSEGDDDIEILTNEER 575
Query: 558 QCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVA 617
+CL +IG+K+NS+L+LGRRGVF GV+EGLHQHWK+REVA+VIT QKLF++V+YTAK+L
Sbjct: 576 ECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYTAKALET 635
Query: 618 ESGGILISVDKLKEGHAIIIYRGKNYRRP-LKLMTQNLLSKRQALRRSLEMQRLGSLKFF 676
ES G+LIS++KLKEGHAI+IYRGKNY+RP KLM QNLL+KR+AL+RS+ MQRLGSLKFF
Sbjct: 636 ESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRKALQRSVVMQRLGSLKFF 695
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/219 (56%), Positives = 160/219 (73%), Gaps = 8/219 (3%)
Query: 1 MPTAPWMRSPIVLQPDEIIKPSK-PKTKKSFKKTDKGLTAKESGVRGKQAMKKIIENIEK 59
+PTAPWM+ P++L+PDEI+ K K +K +KT K L +ESGVRGK+AMKKI+ N+EK
Sbjct: 83 VPTAPWMKGPLLLRPDEILDTKKRNKPRKVEEKTFKALNRRESGVRGKKAMKKIVRNVEK 142
Query: 60 LQKDQILDETQKKVMEKFEFKGCFEENVSHEEDLRGGFGGKVPWLRED-RFVFRRMKKER 118
L +D +ETQ + +FE+ G EE V ++ FGGK+PW RE+ RF+ RRMKKE
Sbjct: 143 LDEDSDSEETQMDDLSEFEYLGRIEEKVESKDR----FGGKMPWEREEERFILRRMKKES 198
Query: 119 MVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVP 178
+ T AE +LD LL RL+ EA KMRKWV V+KAGVTE VV +I+ W+ NELAMV+FDVP
Sbjct: 199 VPTTAELILDEGLLNRLRREASKMRKWVNVRKAGVTELVVNKIKSMWKLNELAMVRFDVP 258
Query: 179 LCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSS 217
LCRNM+RA+EI+E TGGLV+ +KK+ VVYRG S SS
Sbjct: 259 LCRNMERAQEIIE--TGGLVVLSKKEFLVVYRGGPSYSS 295
>gi|218201029|gb|EEC83456.1| hypothetical protein OsI_28955 [Oryza sativa Indica Group]
Length = 514
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 240/516 (46%), Positives = 308/516 (59%), Gaps = 59/516 (11%)
Query: 183 MDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTHLHLEK 242
MDRAREILE+KTGGLV+WT+ H VYRG + K + E
Sbjct: 1 MDRAREILEIKTGGLVVWTRGGIHFVYRGSSYLENAKQHRDFVNYNE------------- 47
Query: 243 KVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRF 302
+S + SN T KD + + I +LYERE +RLLD LGPRF
Sbjct: 48 --ELSPVTSNNPTSQGKYWSKDETLTNDNDEADDKDDKPIKGTLYEREVNRLLDSLGPRF 105
Query: 303 VDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLG 362
+DWW PLPVD DLLPEVVP FK PFR PP R L D+ELTYLRK A PLPTHFVLG
Sbjct: 106 IDWWWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPTLADEELTYLRKHARPLPTHFVLG 165
Query: 363 RNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGV 422
RN LQGLA AILKLWEKSL+AK+ VK GI N+++EQMA LK
Sbjct: 166 RNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNSNHEQMARNLK----------------- 208
Query: 423 LLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIET 482
LTGG ++LRNK II+YRGKDFLP GV ++E+E ++ Q EE ARLK ++
Sbjct: 209 ----RLTGGTVILRNKDYIIIYRGKDFLPGGVAESVIEQESQVHDQQAKEEEARLKMADS 264
Query: 483 FHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLERELRKQERKLL 542
+ + S GT E+Q+ N F +QLEA+ LE+EL+ QE +L
Sbjct: 265 LQMIVGLSSERSYVGTFREYQDFHDSHARRTTEN-NFRIQLEAKKHRLEKELKDQEWRLS 323
Query: 543 L----------------------EQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFD 580
+ ++D D E++TEEER+ KIG+K++ ++LLGRRGVF+
Sbjct: 324 MLTKKIERSNQVLAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRRGVFE 383
Query: 581 GVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRG 640
GVIE +HQHWK++EV +VITKQ Q+ YT+ L E+GG LI++++ HAII+YRG
Sbjct: 384 GVIEEIHQHWKHKEVVKVITKQNQANQITYTSMMLEVETGGTLIAIERFTTSHAIILYRG 443
Query: 641 KNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKFF 676
KNYRRP K NLL+KR+AL+RS+E+QR GS+K+F
Sbjct: 444 KNYRRPTKSAPSNLLTKREALQRSIEVQRRGSMKYF 479
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 130/322 (40%), Gaps = 64/322 (19%)
Query: 165 WRRNELAMVKFDVPL-CRNMDRAREILELKTGGLVIWTKKDAHVVYRGD-----GSKSSV 218
W ++ +A V V + N ++ L+ TGG VI KD ++YRG G SV
Sbjct: 181 WEKSLIAKVAVKVGIQNSNHEQMARNLKRLTGGTVILRNKDYIIIYRGKDFLPGGVAESV 240
Query: 219 -----KMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGE-----EN 268
++ + A ++EA L + L + V +S +S T + + D EN
Sbjct: 241 IEQESQVHDQQAKEEEARLKMADSLQM--IVGLSSERSYVGTFREYQDFHDSHARRTTEN 298
Query: 269 SLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPP 328
+ + K+ R++K L ++E W L + +V+
Sbjct: 299 NFRIQLEAKKH-RLEKELKDQE---------------WRLSMLTKKIERSNQVLAKLHSS 342
Query: 329 FRLSPPDA-RSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKIT 387
+ S D R LT++E RK+ + H +LGR +G+ I + W+ V K+
Sbjct: 343 WSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVI 402
Query: 388 VKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFL----IIL 443
K + AN++ + ++++ TGG L+ +F IIL
Sbjct: 403 TK--------QNQANQITYT--------------SMMLEVETGGTLIAIERFTTSHAIIL 440
Query: 444 YRGKDF---LPCGVENLIVERE 462
YRGK++ NL+ +RE
Sbjct: 441 YRGKNYRRPTKSAPSNLLTKRE 462
>gi|326507446|dbj|BAK03116.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 775
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 238/583 (40%), Positives = 340/583 (58%), Gaps = 60/583 (10%)
Query: 115 KKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVK 174
K+ R + AE +D L RL+ ++ + V KAGVT+++ +I AWR++EL +K
Sbjct: 165 KRVRAPSLAELTMDDVELRRLRGMGMTLKDRITVPKAGVTQAITEKIHDAWRKSELVRLK 224
Query: 175 FDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSK 234
F +M A E++E +TGGL+IW VVYRG S + + ++ D +P +
Sbjct: 225 FHEDHANDMKTAHELVERRTGGLIIWRAGSVMVVYRG--SNYTRPLKSQTLDGTSSPRKQ 282
Query: 235 STHLHLEKKVNVSWIKSNTATLDQNRSLKD--GEENSLPTSIFMDKNLRIDKSLYEREGD 292
+ +I + ++T++ + KD + ++ P +D + D + E E +
Sbjct: 283 ED--------SALFIPNGSSTVENDNQGKDLAAQHDNAP---ILDLHNTEDMTEEELEFN 331
Query: 293 RLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLA 352
++LD LGPRFVDWW LPVD DLLP+ +PG+K PFR+ P R+ LT+ ELT LRKLA
Sbjct: 332 QMLDELGPRFVDWWGTGILPVDADLLPQTIPGYKAPFRVLPTGMRTSLTNSELTNLRKLA 391
Query: 353 HPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWK 412
LP HF LGRNR QGLA AI+KLWEKSLV KI VK GI NT+N+ M++E+K
Sbjct: 392 RNLPCHFALGRNRNHQGLAAAIVKLWEKSLVVKIAVKRGIQNTNNKLMSDEIK------- 444
Query: 413 PNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHE 472
+LTGG LLLRNK+ I++YRGKDFLP V + ERE + QN E
Sbjct: 445 --------------NLTGGTLLLRNKYYIVIYRGKDFLPTSVAAALAEREELTKDIQNLE 490
Query: 473 EGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLER 532
E R +IE H P++ E + GTL+EFQ Q+ +G + E++ + + E+
Sbjct: 491 EQRRSISIE--HSPEDGFEGHALVGTLAEFQEAQARWGRNVTSKEQQEMKEASFRSEKEK 548
Query: 533 ELRKQERKLLLEQ----------------------DPDLEMITEEERQCLHKIGMKINSN 570
R+ E KL + Q D EMIT EER +IG+K+ +
Sbjct: 549 LFRRLEHKLSIAQAKIHRAGKLLSKIEASMVLANPSDDREMITAEERSVFRRIGLKMKAY 608
Query: 571 LLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLK 630
L +G RGVFDGVIE +H HWK+REV ++ITKQK A V TA+ L ESGGIL++++++
Sbjct: 609 LPVGIRGVFDGVIENMHLHWKHREVVKLITKQKTLAFVEETARLLEYESGGILVAIERVP 668
Query: 631 EGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSL 673
+GHA+I YRGKNYRRP+ + +NLL+K +AL+R++ MQR +L
Sbjct: 669 KGHALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAMQRHEAL 711
>gi|357128578|ref|XP_003565949.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 782
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 240/581 (41%), Positives = 330/581 (56%), Gaps = 56/581 (9%)
Query: 115 KKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVK 174
K+ + + AE +D L RL+ +R + V KAGVT++V +I AWR++EL +K
Sbjct: 168 KRVKAPSLAELTMDDAELRRLRGMGMTLRDRITVPKAGVTQAVTEKIHDAWRKSELVRLK 227
Query: 175 FDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSK 234
F L +M A E++E +TGGL+IW VVYRG+ R Q +
Sbjct: 228 FHEDLANDMKTAHELVERRTGGLIIWRAGSVMVVYRGNN-------YTRPTKSQTLDGTS 280
Query: 235 STHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRL 294
ST + + + S +Q + L +N +I D + E E +++
Sbjct: 281 STRKGEDNTLFIPDASSPAENDNQGKDLTAQHDNLSRLNIHNTD----DMTEEELEFNQM 336
Query: 295 LDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHP 354
LD LGPRFVDWW LPVD DLLP+ +PG+K PFRL P R+ LT+ ELT LRKLA
Sbjct: 337 LDELGPRFVDWWGTGILPVDADLLPQTIPGYKAPFRLLPTGMRTSLTNAELTNLRKLARS 396
Query: 355 LPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPN 414
LP HF LGRNR QGLA+AI+KLWEKSLV KI VK GI NT+NE M++E+K
Sbjct: 397 LPCHFALGRNRNHQGLASAIIKLWEKSLVVKIAVKRGIQNTNNELMSDEIKK-------- 448
Query: 415 FKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEG 474
LTGG LLLRNK+ I++YRGKDFLP V + ERE + QN EE
Sbjct: 449 -------------LTGGTLLLRNKYFIVIYRGKDFLPQSVAVALAEREELTKDIQNVEEQ 495
Query: 475 ARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLEREL 534
R I H P++ + + GTL+EFQ Q+ +G + E++ + + E+
Sbjct: 496 RRCTPIA--HSPEDGFDGHALVGTLAEFQEAQARWGRDVTSKEQEEMKEASSRLEKEKIF 553
Query: 535 RKQERKLLLEQ----------------------DPDLEMITEEERQCLHKIGMKINSNLL 572
R+ E KL + Q D EMIT+EER +IG+K+ + L
Sbjct: 554 RRLEHKLSIAQAKIHRAGKLLSKIEASMILANPSDDREMITDEERSVFRRIGLKMKAYLP 613
Query: 573 LGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEG 632
+G RGVFDGVIE +H HWK+REV ++ITKQK A V TA+ L ESGGIL++V+++ +G
Sbjct: 614 VGIRGVFDGVIENMHLHWKHREVVKLITKQKTLAFVNETARLLEYESGGILVAVERVPKG 673
Query: 633 HAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSL 673
+A+I YRGKNYRRP+ + +NLL+K +AL+R++ MQR +L
Sbjct: 674 YALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAMQRHEAL 714
>gi|47900539|gb|AAT39274.1| unknown protein [Oryza sativa Japonica Group]
gi|50878415|gb|AAT85189.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 798
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 249/615 (40%), Positives = 342/615 (55%), Gaps = 89/615 (14%)
Query: 101 VPWLREDRFVFR-------RMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGV 153
+PW R++ R + ++ R + AE ++ E L RL+ +R + V KAGV
Sbjct: 152 LPWERDEVARGRENEEDGVKRRRVRAPSLAELTIEDEELRRLRRLGMTLRDRITVPKAGV 211
Query: 154 TESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRG-- 211
T++V +I AWR++EL +KF L +M A E++E +TGGL+IW VVYRG
Sbjct: 212 TQAVTEKIHDAWRKSELVRLKFHEDLAHDMKTAHELVERRTGGLIIWRSGSVMVVYRGSN 271
Query: 212 ----------DGSKSSVKMCPRSADDQE-APLSKSTHLHLEKKVNVSWIKSNTATLDQNR 260
DG+ S+VK AD P + S H + +V+ + A L+
Sbjct: 272 YKRPLKSETLDGNSSAVK----GADGTLFIPDASSPTEHDSQGKDVNTQREIAARLNMQN 327
Query: 261 SLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPE 320
+ EE E E +++LD LGPRFVDWW LPVD DLLP+
Sbjct: 328 TEDMTEE--------------------ELEFNQMLDELGPRFVDWWGTGILPVDADLLPQ 367
Query: 321 VVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEK 380
+PG+K PFRL P R LT+ ELT LRKLA LP HF LGRNR QGLA AI+KLWEK
Sbjct: 368 TIPGYKTPFRLLPTGMRLTLTNAELTNLRKLARDLPCHFALGRNRNHQGLAAAIVKLWEK 427
Query: 381 SLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFL 440
SLV KI VK GI NT+N+ M+ E+K +LTGG LLLRNK+
Sbjct: 428 SLVVKIAVKRGIQNTNNKLMSEEIK---------------------NLTGGTLLLRNKYY 466
Query: 441 IILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLS 500
I++YRGKDFLP V + ERE + QN EE R I H D+ L+ + AGTL+
Sbjct: 467 IVIYRGKDFLPTSVAAALAEREELTKDIQNVEEQKR--CIPVVHSMDDSLDGHALAGTLA 524
Query: 501 EFQNIQSDFGDLKMGNREFELQ---------------------LEAEIEDLERELRKQER 539
EFQ Q+ +G + E++ +A+I ER L K E
Sbjct: 525 EFQEAQARWGREVTAKEQEEMKEASSRSVKEKLFKRLEHKLSIAQAKIHRAERLLSKIEA 584
Query: 540 KLLLEQ-DPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARV 598
++L D EMIT+EER +IG+++ + L +G RGVFDGVIE +H HWK+REV ++
Sbjct: 585 SMVLANPSDDKEMITDEERSVFRRIGLRLKAYLPVGIRGVFDGVIENMHLHWKHREVVKL 644
Query: 599 ITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKR 658
ITKQK V TA+ L ESGGIL++++++ +G+A+I YRGKNYRRP+ + +NLL+K
Sbjct: 645 ITKQKTLPFVEETARLLEYESGGILVAIERVTKGYALIFYRGKNYRRPINIRPRNLLTKA 704
Query: 659 QALRRSLEMQRLGSL 673
+AL+R++ MQR +L
Sbjct: 705 KALKRAVAMQRHEAL 719
>gi|125553229|gb|EAY98938.1| hypothetical protein OsI_20893 [Oryza sativa Indica Group]
Length = 801
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 249/615 (40%), Positives = 342/615 (55%), Gaps = 89/615 (14%)
Query: 101 VPWLREDRFVFR-------RMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGV 153
+PW R++ R + ++ R + AE ++ E L RL+ +R + V KAGV
Sbjct: 155 LPWERDEVARGRENEEDGVKRRRVRAPSLAELTIEDEELRRLRRLGMTLRDRITVPKAGV 214
Query: 154 TESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRG-- 211
T++V +I AWR++EL +KF L +M A E++E +TGGL+IW VVYRG
Sbjct: 215 TQAVTEKIHDAWRKSELVRLKFHEDLAHDMKTAHELVERRTGGLIIWRSGSVMVVYRGSN 274
Query: 212 ----------DGSKSSVKMCPRSADDQE-APLSKSTHLHLEKKVNVSWIKSNTATLDQNR 260
DG+ S+VK AD P + S H + +V+ + A L+
Sbjct: 275 YKRPLKSETLDGNSSAVK----GADGTLFIPDASSPTEHDSQGKDVNTQREIAARLNMQN 330
Query: 261 SLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPE 320
+ EE E E +++LD LGPRFVDWW LPVD DLLP+
Sbjct: 331 TEDMTEE--------------------ELEFNQMLDELGPRFVDWWGTGILPVDADLLPQ 370
Query: 321 VVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEK 380
+PG+K PFRL P R LT+ ELT LRKLA LP HF LGRNR QGLA AI+KLWEK
Sbjct: 371 TIPGYKTPFRLLPTGMRLTLTNAELTNLRKLARDLPCHFALGRNRNHQGLAAAIVKLWEK 430
Query: 381 SLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFL 440
SLV KI VK GI NT+N+ M+ E+K +LTGG LLLRNK+
Sbjct: 431 SLVVKIAVKRGIQNTNNKLMSEEIK---------------------NLTGGTLLLRNKYY 469
Query: 441 IILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLS 500
I++YRGKDFLP V + ERE + QN EE R I H D+ L+ + AGTL+
Sbjct: 470 IVIYRGKDFLPTSVAAALAEREELTKDIQNVEEQKR--CIPVVHSMDDSLDGHALAGTLA 527
Query: 501 EFQNIQSDFGDLKMGNREFELQ---------------------LEAEIEDLERELRKQER 539
EFQ Q+ +G + E++ +A+I ER L K E
Sbjct: 528 EFQEAQARWGREVTAKEQEEMKEASSRSVKEKLFKRLEHKLSIAQAKIHRAERLLSKIEA 587
Query: 540 KLLLEQ-DPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARV 598
++L D EMIT+EER +IG+++ + L +G RGVFDGVIE +H HWK+REV ++
Sbjct: 588 SMVLANPSDDKEMITDEERSVFRRIGLRLKAYLPVGIRGVFDGVIENMHLHWKHREVVKL 647
Query: 599 ITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKR 658
ITKQK V TA+ L ESGGIL++++++ +G+A+I YRGKNYRRP+ + +NLL+K
Sbjct: 648 ITKQKTLPFVEETARLLEYESGGILVAIERVPKGYALIFYRGKNYRRPINIRPRNLLTKA 707
Query: 659 QALRRSLEMQRLGSL 673
+AL+R++ MQR +L
Sbjct: 708 KALKRAVAMQRHEAL 722
>gi|356529577|ref|XP_003533366.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 791
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 241/584 (41%), Positives = 332/584 (56%), Gaps = 71/584 (12%)
Query: 115 KKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVK 174
++ R + A+ L+ ELL RL+ E ++R+ V V KAG+TE V+ +I WR+ EL +K
Sbjct: 173 RRVRAPSLADLTLEDELLRRLRREGMRVRERVSVPKAGLTEEVMEKIHKRWRKEELVRLK 232
Query: 175 FDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRG---DGSKSSVKMCPRSADDQEAP 231
F L ++M +A EI+E +TGGLV W +VYRG G S ++ + D P
Sbjct: 233 FHEELAKDMRKAHEIVERRTGGLVTWRSGSVMMVYRGIDYQGPDSRKELNEKKGDGFFVP 292
Query: 232 LSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREG 291
+VS + +TAT +S E P ++ S E E
Sbjct: 293 -------------DVSKREDSTATSTSEKSEVVVREREHPENM----------SEAEAEY 329
Query: 292 DRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKL 351
+ LLDGLGPRF WW LPVD DLLP VPG+K PFRL P RS+LT+ E+T LRKL
Sbjct: 330 NALLDGLGPRFFGWWGTGILPVDADLLPRTVPGYKTPFRLLPTGMRSRLTNAEMTNLRKL 389
Query: 352 AHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKW 411
A LP HF +GRNR QGLA AILKLWEKSLV+KI VK GI NT+NE MA ELK
Sbjct: 390 AKSLPCHFAVGRNRNHQGLACAILKLWEKSLVSKIAVKRGIQNTNNELMAEELKM----- 444
Query: 412 KPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNH 471
LTGG LLLRNK+ I++YRGKDF+P V ++ ERE + Q+
Sbjct: 445 ----------------LTGGTLLLRNKYFIVIYRGKDFVPTSVAAVLAEREELTKQVQDV 488
Query: 472 EEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLE 531
E+ R +A++ +P E T++AGTL+EF Q+ +G + ++ EA
Sbjct: 489 EDKVRCRAVDA--IPSGQGEATAQAGTLAEFYEAQARWGREISPDEREKMMEEAAKAKTA 546
Query: 532 RELRKQERKLLLEQ----------------------DPDLEMITEEERQCLHKIGMKINS 569
+ +R+ E K+ + Q D D E IT+EER K+G+++
Sbjct: 547 KLVRQIEHKIFIAQTKKLRAEKLLAKIEASMVPAGPDYDQETITDEERVMFRKVGLRMKP 606
Query: 570 NLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKL 629
L LG RGVFDGV+E +H HWK+RE+ +++TKQK A V TA+ L ESGGIL++++K+
Sbjct: 607 YLPLGIRGVFDGVVENMHLHWKHRELVKLMTKQKTLAFVEDTARLLEYESGGILVAIEKV 666
Query: 630 KEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSL 673
+ A+I YRGKNY+RP+ L +NLL+K +AL+R + MQR +L
Sbjct: 667 SKEFALIYYRGKNYKRPITLRPRNLLTKGKALKRHVAMQRHEAL 710
>gi|255551945|ref|XP_002517017.1| conserved hypothetical protein [Ricinus communis]
gi|223543652|gb|EEF45180.1| conserved hypothetical protein [Ricinus communis]
Length = 773
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 269/677 (39%), Positives = 374/677 (55%), Gaps = 83/677 (12%)
Query: 50 MKKIIENIEKLQK-DQILDETQK-KVMEKFEFKGCFEENVSHEE----DLRGGFGGKVPW 103
M+KI+E ++K D +DE +K K +E+ KG E+ EE + RGGF + P
Sbjct: 1 MEKIVEKLKKHGYIDGNVDEKKKEKTLERVIQKGSVEDIFYVEEGNLPNSRGGFSKESPL 60
Query: 104 LRED--------RFVFRRMKKERM-------------VTKAETMLDGELLERLKDEARKM 142
ED RF + + K+E + AE L L RL++ ++
Sbjct: 61 GVEDVFKSNGEVRFPWEKPKREELEHEKKWTARSKSRTQLAELTLPESELRRLRNLTYQI 120
Query: 143 RKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTK 202
+ V+VK AGVT+ VV I W+ +E+ VK + NM R EILE KTGGLVIW
Sbjct: 121 KSKVRVKGAGVTQEVVDSIHDRWKTSEIVRVKVEGAPALNMRRMHEILERKTGGLVIWRS 180
Query: 203 KDAHVVYRG----DGSKSSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQ 258
+ +YRG D S K + + LS +T + + + N L+
Sbjct: 181 GTSVSLYRGVSYEDPSVQLNKQILKRNELSNNSLSTATGIIRSPSKSAASSDLNMPHLNS 240
Query: 259 NRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLL 318
+ S +GEE I M+ ++ YE E D+LL+GLGPR+ DW PLPVD D+L
Sbjct: 241 D-STAEGEEKK---EIEMETEVK-----YEDEVDKLLEGLGPRYTDWAGLDPLPVDADML 291
Query: 319 PEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLW 378
P ++PG++PPFR+ P RS L E T LR+LA LP HF LGR+R LQGLA A++KLW
Sbjct: 292 PGIIPGYQPPFRILPYGVRSSLGQKEATSLRRLARILPPHFALGRSRQLQGLADAMIKLW 351
Query: 379 EKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNK 438
EKS +AKI++K G+ T +E+MA ++K LTGG+LL RNK
Sbjct: 352 EKSSIAKISLKRGVQLTTSERMAEDIK---------------------KLTGGMLLSRNK 390
Query: 439 FLIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGT 498
++ YRGKDFL V +VERER Q Q+ EE ARL+A F E LE+ AGT
Sbjct: 391 DFLVFYRGKDFLSPEVTEALVERERLAQSLQDKEEQARLRASALFVQTAETLEQPGTAGT 450
Query: 499 LSEFQNIQSDFGDLKMGN------REFEL--------QLEAEIEDLERELRKQERKLL-- 542
L E + + +G N RE E+ +LE+++ E++L K ER L
Sbjct: 451 LEETLDADARWGKCLDQNHREKIMREAEIARHANLVRKLESKLAFAEKKLMKAERALSKV 510
Query: 543 ------LEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVA 596
E+ D E IT+EER K+G+++ + LLLGRRGVFDG +E +H HWKYRE+
Sbjct: 511 EVFLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELV 570
Query: 597 RVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLS 656
++I K K QV A +L AESGGIL+SVD++ +G+AII++RGK+Y+RP KL NLL+
Sbjct: 571 KIILKAKNIEQVKKIALALEAESGGILVSVDRVSKGYAIIVFRGKDYQRPSKLRPGNLLT 630
Query: 657 KRQALRRSLEMQRLGSL 673
KR+AL RS+E+QR +L
Sbjct: 631 KRKALARSIEIQRSEAL 647
>gi|356522763|ref|XP_003530015.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 734
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 246/586 (41%), Positives = 335/586 (57%), Gaps = 74/586 (12%)
Query: 115 KKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVK 174
++ R + A+ L+ ELL RL+ E ++R+ V V KAG+T+ V+ +I WR+ EL +K
Sbjct: 172 RRVRAPSLADLTLEDELLRRLRREGMRVRERVSVPKAGLTQEVMEKIHKRWRKEELVRLK 231
Query: 175 FDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRG---DGSKSSVKMCPRSADDQEAP 231
F L ++M +A EI+E +TGGLV W +VYRG G S ++ + D P
Sbjct: 232 FHEELAKDMRKAHEIVERRTGGLVTWRSGSVMMVYRGIDYQGPDSQKEVNEKKGDGFFVP 291
Query: 232 -LSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYERE 290
+SK S+TAT +S E P ++ S E E
Sbjct: 292 DVSKRED-------------SSTATSTSEKSEVVVREREHPENM----------SEAEAE 328
Query: 291 GDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRK 350
+ LLDGLGPRFV WW LPVD DLLP VPG+K PFRL P RS+LT+ E+T LRK
Sbjct: 329 YNALLDGLGPRFVGWWGTGILPVDADLLPRTVPGYKTPFRLLPTGMRSRLTNAEMTNLRK 388
Query: 351 LAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAK 410
LA LP HF LGRNR QGLA AILKLWEKSLVAKI VK GI NT+NE MA ELK
Sbjct: 389 LAKSLPCHFALGRNRNHQGLACAILKLWEKSLVAKIAVKRGIQNTNNELMAEELKM---- 444
Query: 411 WKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQN 470
LTGG LLLRNK+ I++YRGKDF+P V ++ ERE + Q+
Sbjct: 445 -----------------LTGGTLLLRNKYFIVIYRGKDFVPTSVAAVLAEREELTKQVQD 487
Query: 471 HEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFG-DLKMGNREFELQLEAEIED 529
E+ R +A++ L E T++AGTL+EF Q+ +G ++ RE ++ EA
Sbjct: 488 VEDKVRCRAVDAIPLGQG--EATAQAGTLAEFYEAQARWGREISPEEREKMVE-EAAKTK 544
Query: 530 LERELRKQERKLLLEQ----------------------DPDLEMITEEERQCLHKIGMKI 567
+ +R+ E K+ + Q D D E IT+EER K+G+++
Sbjct: 545 TAKLVRQIEHKIFIAQTKKLRAEKLLAKIEASMVPAGPDYDQETITDEERVMFRKVGLRM 604
Query: 568 NSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVD 627
L LG RGVFDGV+E +H HWK+RE+ +++TKQK A V TA+ L ESGGIL++++
Sbjct: 605 KPYLPLGIRGVFDGVVENMHLHWKHRELVKLMTKQKTVAFVEDTARLLEYESGGILVAIE 664
Query: 628 KLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSL 673
K+ + A+I YRGKNY+RP+ L +NLL+K +AL+R + MQR +L
Sbjct: 665 KVSKEFALIYYRGKNYKRPITLRPRNLLTKGKALKRHVAMQRHEAL 710
>gi|222632479|gb|EEE64611.1| hypothetical protein OsJ_19463 [Oryza sativa Japonica Group]
Length = 601
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 238/567 (41%), Positives = 321/567 (56%), Gaps = 82/567 (14%)
Query: 142 MRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWT 201
+R + V KAGVT++V +I AWR++EL +KF L +M A E++E +TGGL+IW
Sbjct: 3 LRDRITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAHDMKTAHELVERRTGGLIIWR 62
Query: 202 KKDAHVVYRG------------DGSKSSVKMCPRSADDQE-APLSKSTHLHLEKKVNVSW 248
VVYRG DG+ S+VK AD P + S H + +V+
Sbjct: 63 SGSVMVVYRGSNYKRPLKSETLDGNSSAVK----GADGTLFIPDASSPTEHDSQGKDVNT 118
Query: 249 IKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMW 308
+ A L+ + EE E E +++LD LGPRFVDWW
Sbjct: 119 QREIAARLNMQNTEDMTEE--------------------ELEFNQMLDELGPRFVDWWGT 158
Query: 309 KPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQ 368
LPVD DLLP+ +PG+K PFRL P R LT+ ELT LRKLA LP HF LGRNR Q
Sbjct: 159 GILPVDADLLPQTIPGYKTPFRLLPTGMRLTLTNAELTNLRKLARDLPCHFALGRNRNHQ 218
Query: 369 GLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHL 428
GLA AI+KLWEKSLV KI VK GI NT+N+ M+ E+K +L
Sbjct: 219 GLAAAIVKLWEKSLVVKIAVKRGIQNTNNKLMSEEIK---------------------NL 257
Query: 429 TGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPDE 488
TGG LLLRNK+ I++YRGKDFLP V + ERE + QN EE R I H D+
Sbjct: 258 TGGTLLLRNKYYIVIYRGKDFLPTSVAAALAEREELTKDIQNVEEQKR--CIPVVHSMDD 315
Query: 489 PLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQ---------------------LEAEI 527
L+ + AGTL+EFQ Q+ +G + E++ +A+I
Sbjct: 316 SLDGHALAGTLAEFQEAQARWGREVTAKEQEEMKEASSRSVKEKLFKRLEHKLSIAQAKI 375
Query: 528 EDLERELRKQERKLLLEQ-DPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGL 586
ER L K E ++L D EMIT+EER +IG+++ + L +G RGVFDGVIE +
Sbjct: 376 HRAERLLSKIEASMVLANPSDDKEMITDEERSVFRRIGLRLKAYLPVGIRGVFDGVIENM 435
Query: 587 HQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRP 646
H HWK+REV ++ITKQK V TA+ L ESGGIL++++++ +G+A+I YRGKNYRRP
Sbjct: 436 HLHWKHREVVKLITKQKTLPFVEETARLLEYESGGILVAIERVTKGYALIFYRGKNYRRP 495
Query: 647 LKLMTQNLLSKRQALRRSLEMQRLGSL 673
+ + +NLL+K +AL+R++ MQR +L
Sbjct: 496 INIRPRNLLTKAKALKRAVAMQRHEAL 522
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 565 MKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVA-ESGGIL 623
M + + + + GV V E +H W+ E+ R+ + L A + TA LV +GG++
Sbjct: 1 MTLRDRITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDL-AHDMKTAHELVERRTGGLI 59
Query: 624 ISVDKLKEGHAIIIYRGKNYRRPLKLMT 651
I + G +++YRG NY+RPLK T
Sbjct: 60 I----WRSGSVMVVYRGSNYKRPLKSET 83
>gi|357500379|ref|XP_003620478.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355495493|gb|AES76696.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 820
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 248/612 (40%), Positives = 340/612 (55%), Gaps = 82/612 (13%)
Query: 101 VPWLREDRFVFRRMK----------KERMV---TKAETMLDGELLERLKDEARKMRKWVK 147
VPW RE+ R + K+R + + AE L+ ELL RL+ E +R+ V
Sbjct: 174 VPWKREEEREMRSIDSGGGIKEEGFKKRTLKAPSLAELTLEDELLRRLRREGMHLRERVS 233
Query: 148 VKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHV 207
V KAG+T+ V+ +I +WR+ EL +KF L +NM A +I+E +TGGLV W +
Sbjct: 234 VPKAGLTQEVMEKIHESWRKKELVRLKFHEELAKNMRIAHQIVERRTGGLVTWRAGSVMI 293
Query: 208 VYRGDGSK--SSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDG 265
VYRG + +S ++ + D P S L K N +
Sbjct: 294 VYRGKNYQGPASPELDVKEGDGFFVPDVSSGSLSKTKDSNAT------------------ 335
Query: 266 EENSLPTSIFMDKNLRIDKSLYEREG--DRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVP 323
+SL S + +N+ + + + E E + LLD LGPRFV WW PVD DLLP VP
Sbjct: 336 --SSLENSEQVGRNVELPEKMTEEEAEYNALLDDLGPRFVGWWGTGIPPVDADLLPREVP 393
Query: 324 GFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLV 383
G+K P+RL P RS+LT E+T LRK+A LP HF LGRNR QGLA AILKLWE+SL+
Sbjct: 394 GYKTPYRLLPTGMRSRLTGAEMTDLRKIAKSLPCHFALGRNRNHQGLACAILKLWERSLI 453
Query: 384 AKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIIL 443
AKI VK GI NT+N+ MA+EL LTGG LLLRN+F I++
Sbjct: 454 AKIAVKPGIQNTNNKLMADELST---------------------LTGGTLLLRNRFYIVI 492
Query: 444 YRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQ 503
YRGKDF+P GV ++ ER+ + Q+ EE R KA+ P E T+ AG+L+EF
Sbjct: 493 YRGKDFVPTGVAAVLAERQELTKQVQDVEEKVRCKAV--VATPSVQGEATAPAGSLAEFY 550
Query: 504 NIQSDFG--------------DLKMGNREFELQLEAEIEDLERELRKQERKLL------- 542
Q+ +G K N + Q+E +I +L + ER L
Sbjct: 551 EAQARWGRDVSSEEHERMIKEATKAKNVKLVKQIEHKISLAANKLHRAERLLAKIESSMV 610
Query: 543 -LEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITK 601
+ D D E IT+EER +IG+++ + L LG RGVFDGVIE +H HWK+RE+ +++TK
Sbjct: 611 PVGPDYDQETITDEERVVFRQIGLRMKAYLQLGIRGVFDGVIENMHLHWKHRELVKLVTK 670
Query: 602 QKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQAL 661
QK A V TA+ L ESGGIL++++K+ + AII YRGKNY+RPL L +NLL+K +AL
Sbjct: 671 QKNRAFVEDTARLLEYESGGILVAIEKVSKEFAIIYYRGKNYKRPLTLRPRNLLTKAKAL 730
Query: 662 RRSLEMQRLGSL 673
+RS+ M R +L
Sbjct: 731 KRSVAMLRHEAL 742
>gi|224118814|ref|XP_002317913.1| predicted protein [Populus trichocarpa]
gi|222858586|gb|EEE96133.1| predicted protein [Populus trichocarpa]
Length = 806
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 260/678 (38%), Positives = 360/678 (53%), Gaps = 83/678 (12%)
Query: 101 VPWLREDRFVFR--------RMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAG 152
+PW RE+R R ++ + T AE ++ E L RL+ +R+ + + KAG
Sbjct: 167 LPWEREERGAVEMEGGIESGRKRRGKAPTLAELTIEDEELRRLRRMGMFIRERISIPKAG 226
Query: 153 VTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRG- 211
+T +V+ I WR+ EL +KF L +M A EI+E +TGGLVIW VV+RG
Sbjct: 227 ITNAVLENIHDRWRKEELVRLKFHEVLAHDMKTAHEIVERRTGGLVIWRAGSVMVVFRGT 286
Query: 212 --DGSKSSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENS 269
G S ++ R D P ST + + N++ S + L ++ E
Sbjct: 287 NYQGPPSKLQPADREGDALFVPDVSSTDSVMTRSSNIATSSSEKSKL----VMRITE--- 339
Query: 270 LPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPF 329
PT ++ E E + LLD LGPRF +WW LPVD DLLP VP +K PF
Sbjct: 340 -PTENMTEE---------EAELNSLLDDLGPRFEEWWGTGLLPVDADLLPPKVPCYKTPF 389
Query: 330 RLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVK 389
RL P R++LT+ E+T +RKLA LP HF LGRNR QGLA AILKLWEKSLVAKI VK
Sbjct: 390 RLLPVGMRARLTNAEMTNMRKLAKALPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVK 449
Query: 390 WGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDF 449
GI NT+N+ MA+ELK LTGGVLLLRNK+ I+++RGKDF
Sbjct: 450 RGIQNTNNKLMADELKM---------------------LTGGVLLLRNKYYIVIFRGKDF 488
Query: 450 LPCGVENLIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDF 509
LP V + ER+ + Q+ EE R ++E P E + AGTL+EF Q+ +
Sbjct: 489 LPQSVAAALAERQEVTKQIQDVEERVRSNSVEA--APSGEDEGKALAGTLAEFYEAQARW 546
Query: 510 G-DLKMGNREFELQLEAEIEDLERELRKQERKLLLEQ----------------------D 546
G D+ RE ++ EA R +++ E KL + Q D
Sbjct: 547 GRDISTEEREKMIE-EASKAKTARLVKRTEHKLAIAQAKKLRAESLLSKIETTMVPSGPD 605
Query: 547 PDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFA 606
D E I+EEER ++G+++ + L LG RGVFDGVIE +H HWK+RE+ ++I+KQK A
Sbjct: 606 FDQETISEEERVMFRRVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLA 665
Query: 607 QVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLE 666
V TAK L ESGG+L++++++ +G A+I YRGKNYRRP+ + +NLL+K +AL+RS+
Sbjct: 666 FVEDTAKLLEYESGGVLVAIERVPKGFALIYYRGKNYRRPISIRPRNLLTKAKALKRSVA 725
Query: 667 MQRLGSLK--FF----RIPETAGHLQFENQTYLPKKAKLLAHLPLYCLLSQISSVRIYFP 720
MQR +L F I E + + H PL + S F
Sbjct: 726 MQRHEALSQHIFELEKNIEEMVKEMGLSKEEENENNWSSEEHAPLNNVSKLTQSEDKAFF 785
Query: 721 SSSDSSLQVFRHEGNNCD 738
+ SDS +EG NC+
Sbjct: 786 TESDSEDDY--NEGINCE 801
>gi|356576487|ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 835
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 246/678 (36%), Positives = 363/678 (53%), Gaps = 81/678 (11%)
Query: 43 GVRGKQAMKKIIENIEKLQKDQILDETQKKVMEKFEFKGCFEENVSHEEDLRGGFGGKVP 102
G G M +I+E ++K + + +++V+EK + F + RGGF + P
Sbjct: 108 GNTGGSTMDRIVEKLKKFGYVEDGIQNKERVIEKGSVEDIFYVEEGMLPNSRGGFSSESP 167
Query: 103 WL--------REDRFVFRR-----------MKKERMVTKAETMLDGELLERLKDEARKMR 143
RE RF + + M+ + AE L L+RL + +
Sbjct: 168 LGFGSFGSDDREVRFPWEKPVVEELEERKSMRSRSKTSLAELTLPESELKRLLKLTFEKK 227
Query: 144 KWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKK 203
++ ++GVT++VV +I W+ +E+ +KF+ NM R EILE KTGGLVIW
Sbjct: 228 HKTRIGRSGVTQAVVDKIHERWKTSEIVRLKFEGEAALNMKRMHEILERKTGGLVIWRSG 287
Query: 204 DAHVVYRGDG----SKSSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQN 259
++ +YRG S K R +++ L ++ + +++ +A L +
Sbjct: 288 NSVSLYRGVSYEVPSVQQNKKIYRKSENSSKLLPTPSYNSVGNPSDIASNSGTSAPLAKL 347
Query: 260 RSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLP 319
S D +E + K YE E D+LLDGLGPR+ DW PLPVD D+LP
Sbjct: 348 ESTNDEKERDY-----------LPKVNYEHEVDKLLDGLGPRYTDWPGCDPLPVDADMLP 396
Query: 320 EVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWE 379
VPG++PPFR+ P R+ L E T LR++A LP HF LGRNR LQGLA A++KLWE
Sbjct: 397 VTVPGYQPPFRVLPFGVRATLGLREATALRRIARTLPPHFALGRNRQLQGLAVAMIKLWE 456
Query: 380 KSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKF 439
S +AK+ +K G+ T +E+MA E+K LTGG+LL RNK
Sbjct: 457 ISSIAKVALKRGVQLTTSERMAEEIK---------------------KLTGGILLSRNKD 495
Query: 440 LIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTL 499
++ +RGK+FL V ++ERER ++ Q+ EE ARL+A + E +++AGTL
Sbjct: 496 FLVFFRGKNFLSADVTQALLERERMAKVMQDEEEQARLRASSLLIPTNNTSELSAEAGTL 555
Query: 500 SEF----------------QNIQSDFGDLKMGNREFELQLEAEIEDLERELRKQERKLL- 542
E Q I + L+ N +LE ++ ER+LR+ E+ L+
Sbjct: 556 GETLDADAKWGKTLDERHKQKIMREVEQLRHAN--LVKKLEQKLSFAERKLRRAEKALMK 613
Query: 543 -------LEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREV 595
E D E IT+EER K+G+++ + LLLGRRGVFDG IE +H HWKYRE+
Sbjct: 614 VESFLKPSEYKADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYREL 673
Query: 596 ARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLL 655
++I K K F QV A +L AESGG+L+SVDK+ +G+++I+YRGK+Y+RP L +NLL
Sbjct: 674 VKIIVKAKTFEQVKKIALALEAESGGVLVSVDKVSKGYSVIVYRGKDYQRPSTLRPKNLL 733
Query: 656 SKRQALRRSLEMQRLGSL 673
+KR+AL RS+E+QR +L
Sbjct: 734 TKRKALARSIELQRHEAL 751
>gi|255582755|ref|XP_002532154.1| conserved hypothetical protein [Ricinus communis]
gi|223528164|gb|EEF30228.1| conserved hypothetical protein [Ricinus communis]
Length = 745
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 244/575 (42%), Positives = 322/575 (56%), Gaps = 67/575 (11%)
Query: 121 TKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLC 180
T AE ++ E L RL+ +R+ V V KAG+T+ VV +I WR+NEL +KF L
Sbjct: 204 TLAELTIEDEELRRLRRMGMFLRERVNVPKAGLTKEVVEKIHDKWRKNELVRLKFHEVLA 263
Query: 181 RNMDRAREILELKTGGLVIWTKKDAHVVYRG---DGSKSSVKMCPRSADDQEAPLSKSTH 237
+M A EI E +TGGLVIW VVYRG +G S + R D P S
Sbjct: 264 HDMKTAHEITERRTGGLVIWRAGSVMVVYRGSSYEGPPSKTQPVNREGDALFIPDVSSAG 323
Query: 238 LHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDG 297
K NV+ + L R +D + D + E E D LD
Sbjct: 324 SETMKGDNVAPSAAEKRELAMRR---------------LDHSK--DMTEEEIEYDSFLDS 366
Query: 298 LGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPT 357
LGPRF +WW LPVD DLLP +P +K PFRL P RS+LT+ E+T LRKLA LP
Sbjct: 367 LGPRFEEWWGTGILPVDADLLPPKIPDYKTPFRLLPTGMRSRLTNAEMTNLRKLAKKLPC 426
Query: 358 HFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKF 417
HF LGRNR QGLA+ ILK+WEKSLVAKI VK GI NT+N+ MA+ELK
Sbjct: 427 HFALGRNRNHQGLASTILKVWEKSLVAKIAVKRGIQNTNNKLMADELKM----------- 475
Query: 418 SDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGARL 477
LTGGVLLLRNK+ I++YRGKDFLP V + ER+ + Q+ EE R
Sbjct: 476 ----------LTGGVLLLRNKYYIVIYRGKDFLPTSVAAALTERQELTKKIQDVEEKVRS 525
Query: 478 KAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFG-DLKMGNREFELQLEAEIEDLERELRK 536
+ IE +P + E AGTL+EF QS +G D +RE ++ + + R +++
Sbjct: 526 REIEA--VPSKEEEGKPLAGTLAEFYEAQSRWGKDTSAEDREKMIEDDTRAKR-ARIVKR 582
Query: 537 QERKLLLEQ----------------------DPDLEMITEEERQCLHKIGMKINSNLLLG 574
E KL + Q D D E IT+EER +IG+++ + L LG
Sbjct: 583 IEHKLAVAQAKKLRAERLLAKIEVSMLPSGPDYDQETITDEERAVFRRIGLRMKAYLPLG 642
Query: 575 RRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHA 634
RGVFDGVIE +H HWK+RE+ ++I+KQK A TA+ L ESGGIL++++++ +G A
Sbjct: 643 IRGVFDGVIENMHLHWKHRELVKLISKQKTLAFAEDTARLLEYESGGILVAIERVPKGFA 702
Query: 635 IIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQR 669
+I YRGKNYRRP+ L +NLL+K +AL+RS+ MQR
Sbjct: 703 LIYYRGKNYRRPINLRPRNLLTKAKALKRSVAMQR 737
>gi|297734212|emb|CBI15459.3| unnamed protein product [Vitis vinifera]
Length = 830
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 238/579 (41%), Positives = 329/579 (56%), Gaps = 61/579 (10%)
Query: 118 RMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDV 177
R T AE ++ E L RL+ +R+ + V KAG+T++V+ +I WR+ EL +KF
Sbjct: 205 RAPTLAELTIEDEELRRLRRLGMTIRERINVPKAGITQAVLGKIHEKWRKEELVRLKFHE 264
Query: 178 PLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTH 237
L +M A EI+E +TGGLV W VV+RG + K P+ D + L
Sbjct: 265 ALAHDMKTAHEIVERRTGGLVTWRSGSVMVVFRGTNYEGPPK--PQPVDGEGDSLFVP-- 320
Query: 238 LHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPT-SIFMDKNLRIDKSLYEREGDRLLD 296
+VS + N A + N E+ SLP + +N+ +++ Y + LLD
Sbjct: 321 -------DVSSV-DNPAMRNDNNGGPTLEKGSLPVRNPVHAENMTEEEAEY----NSLLD 368
Query: 297 GLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLP 356
GLGPRFVDWW LPVDGDLLP+ +PG+K P R+ P R +LT+ E+T LRKLA LP
Sbjct: 369 GLGPRFVDWWGTGVLPVDGDLLPQSIPGYKTPLRILPTGMRPRLTNAEMTNLRKLAKSLP 428
Query: 357 THFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFK 416
HF LGRNR QGLA AI+KLWEKS+V KI VK GI NT+N+ MA E+K
Sbjct: 429 CHFALGRNRNHQGLAAAIIKLWEKSIVVKIAVKPGIQNTNNKLMAEEIK----------- 477
Query: 417 FSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGAR 476
+LTGGVLLLRNK+ I++YRGKDFLP V + ERE + Q EE R
Sbjct: 478 ----------NLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALSEREELTKHIQVVEEKVR 527
Query: 477 LKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLERELRK 536
E ++ + + AGTL+EF Q+ +G ++ EA R +++
Sbjct: 528 TGGAEAIPSGEDGVGQ-PLAGTLAEFYEAQARWGREISAEEHEKMIEEASRAKSARVVKR 586
Query: 537 QERKLLLEQ----------------------DPDLEMITEEERQCLHKIGMKINSNLLLG 574
E KL L Q D E IT+EER ++G+++ + LLLG
Sbjct: 587 IEHKLALAQAKKLRAERLLAKIEASMIPAGPSDDQETITDEERFMFRRLGLRMKAYLLLG 646
Query: 575 RRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHA 634
RGVFDGVIE +H HWK+RE+ ++I+KQK A V TA+ L ESGGIL++++++ +G+A
Sbjct: 647 VRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILVAIERVPKGYA 706
Query: 635 IIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSL 673
+I YRGKNYRRP+ L +NLL+K +AL+RS+ MQR +L
Sbjct: 707 LIYYRGKNYRRPVSLRPRNLLTKAKALKRSVAMQRHEAL 745
>gi|147815878|emb|CAN72582.1| hypothetical protein VITISV_035294 [Vitis vinifera]
Length = 850
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 238/579 (41%), Positives = 329/579 (56%), Gaps = 61/579 (10%)
Query: 118 RMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDV 177
R T AE ++ E L RL+ +R+ + V KAG+T++V+ +I WR+ EL +KF
Sbjct: 205 RAPTLAELTIEDEELRRLRRLGMTIRERINVPKAGITQAVLGKIHEKWRKEELVRLKFHE 264
Query: 178 PLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTH 237
L +M A EI+E +TGGLV W VV+RG + K P+ D + L
Sbjct: 265 ALAHDMKTAHEIVERRTGGLVTWRSGSVMVVFRGTNYEGPPK--PQPVDGEGDSLFVP-- 320
Query: 238 LHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPT-SIFMDKNLRIDKSLYEREGDRLLD 296
+VS + N A + N E+ SLP + +N+ +++ Y + LLD
Sbjct: 321 -------DVSSV-DNPAMRNDNNGGPTLEKGSLPVRNPVHAENMTEEEAEY----NSLLD 368
Query: 297 GLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLP 356
GLGPRFVDWW LPVDGDLLP+ +PG+K P R+ P R +LT+ E+T LRKLA LP
Sbjct: 369 GLGPRFVDWWGTGVLPVDGDLLPQSIPGYKTPLRILPTGMRPRLTNAEMTNLRKLAKSLP 428
Query: 357 THFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFK 416
HF LGRNR QGLA AI+KLWEKS+V KI VK GI NT+N+ MA E+K
Sbjct: 429 CHFALGRNRNHQGLAAAIIKLWEKSIVVKIAVKPGIQNTNNKLMAEEIK----------- 477
Query: 417 FSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGAR 476
+LTGGVLLLRNK+ I++YRGKDFLP V + ERE + Q EE R
Sbjct: 478 ----------NLTGGVLLLRNKYYIVIYRGKDFLPTSVAAALSEREELTKHIQVVEEKVR 527
Query: 477 LKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLERELRK 536
E ++ + + AGTL+EF Q+ +G ++ EA R +++
Sbjct: 528 TGGAEAIPSGEDGVGQ-PLAGTLAEFYEAQARWGREISAEEHEKMIEEASRAKSARVVKR 586
Query: 537 QERKLLLEQ----------------------DPDLEMITEEERQCLHKIGMKINSNLLLG 574
E KL L Q D E IT+EER ++G+++ + LLLG
Sbjct: 587 IEHKLALAQAKKLRPERLLAKIEASMIPAGPSDDQETITDEERFMFRRLGLRMKAYLLLG 646
Query: 575 RRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHA 634
RGVFDGVIE +H HWK+RE+ ++I+KQK A V TA+ L ESGGIL++++++ +G+A
Sbjct: 647 VRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTARLLEYESGGILVAIERVPKGYA 706
Query: 635 IIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSL 673
+I YRGKNYRRP+ L +NLL+K +AL+RS+ MQR +L
Sbjct: 707 LIYYRGKNYRRPVSLRPRNLLTKAKALKRSVAMQRHEAL 745
>gi|356527819|ref|XP_003532504.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 719
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 250/613 (40%), Positives = 333/613 (54%), Gaps = 111/613 (18%)
Query: 103 WLREDRFVF-----------------RRMKKERMV---TKAETMLDGELLERLKDEARKM 142
WLR D+ +F + M K++ V T AE L E L RL+ +
Sbjct: 100 WLRPDQALFPWDKGQEEDAEEPGEQQKEMLKKKNVNASTLAEQTLVEEELRRLRTLGMSL 159
Query: 143 RKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTK 202
++ + + KAG+T +V+ I W EL +KF L +NM A +I+E +T GLVIW
Sbjct: 160 KEKITIPKAGLTRAVLDRIHRHWSNCELVRLKFHEFLAQNMKLAHQIVEHRTRGLVIWRS 219
Query: 203 KDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSL 262
VYRG + V+ S + EA W K
Sbjct: 220 GSYMWVYRGKNYQGPVESDATSMEKSEA----------------VWWKG----------- 252
Query: 263 KDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVV 322
EN P E E +R+LDG GPRFV+WW LPVD D LP +V
Sbjct: 253 ----ENMTPE---------------EAEFNRMLDGFGPRFVEWWGTGILPVDADSLPPMV 293
Query: 323 PGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSL 382
PG+K P RL P R +LT+DELT +RKLA LP HF LGRNR LQGLA+AIL+LWEKSL
Sbjct: 294 PGYKTPLRLLPAGMRPQLTNDELTNMRKLAKSLPCHFALGRNRNLQGLASAILRLWEKSL 353
Query: 383 VAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLII 442
VAKI VK GI NT+NE MA ELKA LTGG LLLRNK+ I+
Sbjct: 354 VAKIGVKRGIVNTNNELMAQELKA---------------------LTGGTLLLRNKYYIV 392
Query: 443 LYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEF 502
+YRGKDF+P V +I ER+ + Q+ EE R KA+++ P E T++AG+L+EF
Sbjct: 393 IYRGKDFVPTSVAAVIAERQELTKQVQDVEEKVRCKALDS--TPSGEDESTAQAGSLAEF 450
Query: 503 QNIQSDFG-DLKMGNREFELQLEAEIED--------------------LERELRKQERKL 541
Q+ +G D+ RE +Q A+ ++ E+ L K E L
Sbjct: 451 YVAQACWGRDISTEERERMMQEVAKAKNAKLVKKIECKLAVAQAKRLRAEKLLAKIEASL 510
Query: 542 L-LEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVIT 600
L + D D E IT+EER +G+++ + L LG RGVFDGVIE +H HWK+RE+ ++IT
Sbjct: 511 LPVGPDYDKETITDEERVMFRSVGLRMKAYLPLGIRGVFDGVIENMHLHWKHRELVKLIT 570
Query: 601 KQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQA 660
KQK A V TA+ L ESGGIL+++DK+ +G ++I YRGKNYRRP+ L +NLL+K +A
Sbjct: 571 KQKTLAFVEDTARLLEYESGGILVAIDKVPKGFSLIYYRGKNYRRPMTLRPRNLLTKAKA 630
Query: 661 LRRSLEMQRLGSL 673
L+RS+ MQR +L
Sbjct: 631 LQRSVVMQRHEAL 643
>gi|296087726|emb|CBI34982.3| unnamed protein product [Vitis vinifera]
Length = 1028
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 245/610 (40%), Positives = 336/610 (55%), Gaps = 59/610 (9%)
Query: 96 GFGGKVPWLREDRFVFRRMKK------ERMVTKAETMLDGELLERLKDEARKMRKWVKVK 149
G GG + E R +R KK ER T AE L E L RLK ++RK +KV
Sbjct: 149 GTGGVITRFHELRKEVKREKKLVRKEDERAPTLAELTLPEEELRRLKGIGIQIRKKLKVG 208
Query: 150 KAGVTESVVFEIRLAWRRNELAMVKFDVPLCR-NMDRAREILELKTGGLVIWTKKDAHVV 208
KAG+TE +V I WRR E+ ++ + +C+ NM R +ILE KTGGLVIW ++
Sbjct: 209 KAGITEGIVNGIHERWRRAEVVKIRCE-DICKLNMKRTHDILERKTGGLVIWRSGSYIIL 267
Query: 209 YRGDGSKSSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEEN 268
YRG K P D P S + ++N +K
Sbjct: 268 YRGANYK-----YPYFLSDNNLPNDSSHDASSDSQMNNEEHDGKEVCSSGKGDVKSAGPM 322
Query: 269 --------SLPTSIFMDKNLRID---KSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDL 317
SL + +R ++ E E DRLLDGLGPRF DWW + PLP+D DL
Sbjct: 323 PANKIAPLSLIQGVGYPTRVRFQLPGEAQLEEEADRLLDGLGPRFTDWWGYDPLPIDADL 382
Query: 318 LPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKL 377
LP VVPG++ PFRL P + KLT+DE+T LR+L PLP HF LGRNR LQGLA +++KL
Sbjct: 383 LPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPLPCHFALGRNRKLQGLAASMIKL 442
Query: 378 WEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRN 437
WEK +AKI VK G+ NT++E MA ELK +LTGG LL R+
Sbjct: 443 WEKCEIAKIAVKRGVQNTNSEMMAEELK---------------------NLTGGTLLSRD 481
Query: 438 KFLIILYRGKDFLPCGVENLIVER-----ERELQICQNHEEGARLKAIE---TFHLPDEP 489
+ I+ YRGKDFLP V + I R R Q +H + E + H D+
Sbjct: 482 REFIVFYRGKDFLPPAVSSAIEARRKYGIHRGKQKIDHHRLAINAEESELGTSEHASDKD 541
Query: 490 LEKT--SKAGTLSEFQNIQSDFGDLKMGNREFELQLEAE--IEDLERELRKQERKLLLEQ 545
+ T K +LS+ + ++S ++ N + + LE + E L EL +E ++ +
Sbjct: 542 CDGTDDQKTNSLSKRRMLRSAEAVVERTNIKLSMALEKKERAEKLLAEL--EEAQIPQQP 599
Query: 546 DPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLF 605
+ D E ITEEER L K+G+++ LLLGRRG+FDG +E +H HWKYRE+ ++I+ +
Sbjct: 600 EIDKEGITEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSI 659
Query: 606 AQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSL 665
+ A++L AESGGIL++V+++ +G+AII+YRGKNY+RP L Q LL+KR+AL+RSL
Sbjct: 660 EDIHGVARTLEAESGGILVAVERVSKGYAIIMYRGKNYKRPASLRPQTLLNKREALKRSL 719
Query: 666 EMQRLGSLKF 675
E QR SLK
Sbjct: 720 EAQRRESLKL 729
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 35/179 (19%)
Query: 481 ETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLERELRKQERK 540
+++ LP+ P+ + G ++ F ++ + K+E+K
Sbjct: 136 QSWSLPENPVPEPGTGGVITRFHELRKEV--------------------------KREKK 169
Query: 541 LLLEQD---PDLEMIT--EEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREV 595
L+ ++D P L +T EEE + L IG++I L +G+ G+ +G++ G+H+ W+ EV
Sbjct: 170 LVRKEDERAPTLAELTLPEEELRRLKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEV 229
Query: 596 ARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNL 654
++ + + T L ++GG++I + G II+YRG NY+ P L NL
Sbjct: 230 VKIRCEDICKLNMKRTHDILERKTGGLVI----WRSGSYIILYRGANYKYPYFLSDNNL 284
>gi|297831030|ref|XP_002883397.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
gi|297329237|gb|EFH59656.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
Length = 873
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 261/704 (37%), Positives = 374/704 (53%), Gaps = 89/704 (12%)
Query: 20 KPSKPKTKKSFKKTDKGLTAKESGVRGKQA--MKKIIENIEKLQKDQILDETQKKVMEKF 77
+P PK +++K ++ ++ R + M+KI+E ++K + +E Q K +E+
Sbjct: 82 QPKPPKVVVNYRKEGGIVSGDDNRSRDGEGSTMEKIVEKLKKYGYMEKGEEVQNKEIEQE 141
Query: 78 EF--KGCFEENVSHEE----DLRGGFGGKVPWLRED--------RFVFRRM--------- 114
KG E+ EE + RGGF + R+D F + +M
Sbjct: 142 RRIEKGSVEDIFYVEEGNLPNTRGGFTEESLLGRDDVFGSNGEVGFPWEKMSAKEKKELE 201
Query: 115 -----KKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNE 169
KKE + AE L L RL++ + ++++ AGVT+ V I+ W+ E
Sbjct: 202 AEWTAKKENRYSLAEMTLPESELRRLRNLTFRTASKMRIRGAGVTQVAVDAIKEKWKSAE 261
Query: 170 LAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQE 229
+ +K + NM + EILE KTGGLVIW + +YRG E
Sbjct: 262 IVRLKIEGASALNMRKMHEILEKKTGGLVIWRSGTSISLYRGVS--------------YE 307
Query: 230 APLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYER 289
P K E+ S ++ T + + + + + TS+ YE
Sbjct: 308 LPSGKWNKQRREETPPSSLPETTTMVDNSDGKVHLPQLEQVTTSVEKKDQTSQPDVEYED 367
Query: 290 EGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLR 349
E D LLDGLGPRF+DW PLPVD DLLP +PG++PPFR+ P RS L E T LR
Sbjct: 368 EIDELLDGLGPRFMDWPGDNPLPVDADLLPGAIPGYEPPFRVLPYGVRSSLGPKEATALR 427
Query: 350 KLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLA 409
+LA +P HF LGR+R LQGLATA+++LWEKS++AKI +K G+ +T +E+MA +LK
Sbjct: 428 RLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLK---- 483
Query: 410 KWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQ 469
LTGG+LL RNK ++ YRGK+FL V + +VE+ER ++ Q
Sbjct: 484 -----------------KLTGGILLSRNKDFLVFYRGKNFLSREVADALVEQERFVRTLQ 526
Query: 470 NHEEGARLKAIETFHLPD-EPLEKTSKAGTLSEFQNIQSDFG-DLKMGNREFELQLEAEI 527
+ EE ARL+ +P EP +K AGTL E + +G +L + E++ E EI
Sbjct: 527 DEEEQARLRGSSALIVPCIEPPKKLVSAGTLGETLDATGKWGKNLDDDDHSDEVKQEVEI 586
Query: 528 -------EDLERELRKQERKLL---------------LEQDPDLEMITEEERQCLHKIGM 565
LER+L ERKLL EQ D + IT+EER K+G+
Sbjct: 587 LRHENLVRKLERKLAFAERKLLKAERGLAKVEECLKPAEQREDPDSITDEERFMFRKLGL 646
Query: 566 KINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILIS 625
K+ + LLLGRRGVFDG +E +H HWKYRE+ ++I K K F V A +L AESGGIL+S
Sbjct: 647 KMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAESGGILVS 706
Query: 626 VDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQR 669
+DK+ +G+AII+YRGK+Y+RP L +NLL+KR+AL RS+E+QR
Sbjct: 707 IDKVTKGYAIIVYRGKDYKRPTMLRPKNLLTKRKALARSIELQR 750
>gi|225452572|ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1044
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 245/610 (40%), Positives = 336/610 (55%), Gaps = 59/610 (9%)
Query: 96 GFGGKVPWLREDRFVFRRMKK------ERMVTKAETMLDGELLERLKDEARKMRKWVKVK 149
G GG + E R +R KK ER T AE L E L RLK ++RK +KV
Sbjct: 149 GTGGVITRFHELRKEVKREKKLVRKEDERAPTLAELTLPEEELRRLKGIGIQIRKKLKVG 208
Query: 150 KAGVTESVVFEIRLAWRRNELAMVKFDVPLCR-NMDRAREILELKTGGLVIWTKKDAHVV 208
KAG+TE +V I WRR E+ ++ + +C+ NM R +ILE KTGGLVIW ++
Sbjct: 209 KAGITEGIVNGIHERWRRAEVVKIRCE-DICKLNMKRTHDILERKTGGLVIWRSGSYIIL 267
Query: 209 YRGDGSKSSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEEN 268
YRG K P D P S + ++N +K
Sbjct: 268 YRGANYK-----YPYFLSDNNLPNDSSHDASSDSQMNNEEHDGKEVCSSGKGDVKSAGPM 322
Query: 269 --------SLPTSIFMDKNLRID---KSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDL 317
SL + +R ++ E E DRLLDGLGPRF DWW + PLP+D DL
Sbjct: 323 PANKIAPLSLIQGVGYPTRVRFQLPGEAQLEEEADRLLDGLGPRFTDWWGYDPLPIDADL 382
Query: 318 LPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKL 377
LP VVPG++ PFRL P + KLT+DE+T LR+L PLP HF LGRNR LQGLA +++KL
Sbjct: 383 LPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPLPCHFALGRNRKLQGLAASMIKL 442
Query: 378 WEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRN 437
WEK +AKI VK G+ NT++E MA ELK +LTGG LL R+
Sbjct: 443 WEKCEIAKIAVKRGVQNTNSEMMAEELK---------------------NLTGGTLLSRD 481
Query: 438 KFLIILYRGKDFLPCGVENLIVER-----ERELQICQNHEEGARLKAIE---TFHLPDEP 489
+ I+ YRGKDFLP V + I R R Q +H + E + H D+
Sbjct: 482 REFIVFYRGKDFLPPAVSSAIEARRKYGIHRGKQKIDHHRLAINAEESELGTSEHASDKD 541
Query: 490 LEKT--SKAGTLSEFQNIQSDFGDLKMGNREFELQLEAE--IEDLERELRKQERKLLLEQ 545
+ T K +LS+ + ++S ++ N + + LE + E L EL +E ++ +
Sbjct: 542 CDGTDDQKTNSLSKRRMLRSAEAVVERTNIKLSMALEKKERAEKLLAEL--EEAQIPQQP 599
Query: 546 DPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLF 605
+ D E ITEEER L K+G+++ LLLGRRG+FDG +E +H HWKYRE+ ++I+ +
Sbjct: 600 EIDKEGITEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYRELVKIISNGRSI 659
Query: 606 AQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSL 665
+ A++L AESGGIL++V+++ +G+AII+YRGKNY+RP L Q LL+KR+AL+RSL
Sbjct: 660 EDIHGVARTLEAESGGILVAVERVSKGYAIIMYRGKNYKRPASLRPQTLLNKREALKRSL 719
Query: 666 EMQRLGSLKF 675
E QR SLK
Sbjct: 720 EAQRRESLKL 729
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 86/179 (48%), Gaps = 35/179 (19%)
Query: 481 ETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLERELRKQERK 540
+++ LP+ P+ + G ++ F ++ + K+E+K
Sbjct: 136 QSWSLPENPVPEPGTGGVITRFHELRKEV--------------------------KREKK 169
Query: 541 LLLEQD---PDLEMIT--EEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREV 595
L+ ++D P L +T EEE + L IG++I L +G+ G+ +G++ G+H+ W+ EV
Sbjct: 170 LVRKEDERAPTLAELTLPEEELRRLKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEV 229
Query: 596 ARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNL 654
++ + + T L ++GG++I + G II+YRG NY+ P L NL
Sbjct: 230 VKIRCEDICKLNMKRTHDILERKTGGLVI----WRSGSYIILYRGANYKYPYFLSDNNL 284
>gi|297830494|ref|XP_002883129.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
gi|297328969|gb|EFH59388.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
Length = 846
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 235/586 (40%), Positives = 336/586 (57%), Gaps = 71/586 (12%)
Query: 116 KERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKF 175
+ R + AE ++ L RL+ + +R + + KAG+T++V+ +I WR+ EL +KF
Sbjct: 232 RARAPSLAELTVEDSELRRLRRDGMYLRVRINIPKAGLTQAVMEKIYDTWRKEELVRLKF 291
Query: 176 DVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKS 235
L R+M A EI+E +TGG+VIW VVYRG K + + A +E
Sbjct: 292 HEVLARDMKTAHEIVERRTGGMVIWRAGSVMVVYRGLDYKGPPVISNQMAGPKE------ 345
Query: 236 THLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMD---KNLRIDKSLYEREG- 291
++ ++ D+ + KD N P S D KN +++ E E
Sbjct: 346 ----------TLFVPDVSSAGDEATNAKD---NQSPPSEIKDPIIKNPIRKENMTEEEAE 392
Query: 292 -DRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRK 350
+ LLD LGPRF +WW LPVD DLLP +PG+K PFRL P RS LT+ E+T LRK
Sbjct: 393 FNSLLDSLGPRFQEWWGTGVLPVDADLLPPTIPGYKTPFRLLPTGMRSNLTNAEMTNLRK 452
Query: 351 LAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAK 410
+ LP HF LGRNR QGLA AIL++WEKSL+AKI VK GI NT+N+ MA+E+KA
Sbjct: 453 IGKTLPCHFALGRNRNHQGLAAAILQIWEKSLIAKIAVKRGIQNTNNKLMADEVKA---- 508
Query: 411 WKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQN 470
LTGGVLLLRNK+ I++YRGKDFLP V + ER+ + Q+
Sbjct: 509 -----------------LTGGVLLLRNKYYIVIYRGKDFLPSSVAATLAERQELTKEIQD 551
Query: 471 HEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFG-DLKMGNREFELQLEAEIED 529
EE R + IE + + ++AGTL+EF Q+ +G ++ +RE ++ + + +
Sbjct: 552 VEERVRNREIEAVQPVGDKV--PAEAGTLAEFYEAQARWGKEITPDHREKMIEEASRVAN 609
Query: 530 LERELRKQERKLLLEQ----------------------DPDLEMITEEERQCLHKIGMKI 567
R +++ + KL L Q D D E+I+EEER K+G+K+
Sbjct: 610 -ARVVKRIQHKLNLAQSKFQRAEKLLSKIEASMIPNGPDYDQEVISEEERAMFRKVGLKM 668
Query: 568 NSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVD 627
+ L LG RGVFDGVIE +H HWK+RE+ ++I+KQK A V TA+ L ESGG+L++++
Sbjct: 669 KAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKNLAFVEDTARLLEYESGGVLVAIE 728
Query: 628 KLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSL 673
K+ +G A+I YRGKNYRRP+ L +NLL+K +AL+RS+ MQR +L
Sbjct: 729 KVPKGFALIYYRGKNYRRPISLRPRNLLTKAKALKRSIAMQRHEAL 774
>gi|224059986|ref|XP_002300024.1| predicted protein [Populus trichocarpa]
gi|222847282|gb|EEE84829.1| predicted protein [Populus trichocarpa]
Length = 1012
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 261/679 (38%), Positives = 361/679 (53%), Gaps = 90/679 (13%)
Query: 112 RRMKKERMVTK--------AETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRL 163
R +K+ER K AE L E L RL+ ++ +KV KAG+TE +V I
Sbjct: 139 REVKREREAKKGEAKVPSLAELSLPNEELRRLRTIGIAEKRKLKVGKAGITEGIVNGIHE 198
Query: 164 AWRRNELAMVKFDVPLCR-NMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCP 222
WRR+E+ + + LCR NM R ++LE KTGGLV+W V+YRG K +
Sbjct: 199 RWRRSEVVKIVCE-DLCRMNMKRTHDLLERKTGGLVVWRVGSKIVLYRGADYKYPYFLAE 257
Query: 223 RSADDQEAPLSKSTHLHLEKKVN-----VSWIKSNTATLDQNRSLKDGEENSLPTSIFMD 277
S+ ++ +P + +K+V+ +S + + A + RS + SL +
Sbjct: 258 TSSVNETSPDAVQNIDVDDKEVDEEGSVLSAV--DGAAPPEPRSSDEIVRPSLVQGVGSP 315
Query: 278 KNLRID---KSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPP 334
+R ++ E D+LLDGLGPRF DWW + PLPVD DLLP VV G++ PFRL P
Sbjct: 316 NRVRFQLPGEAQLTEEADQLLDGLGPRFNDWWGYDPLPVDADLLPAVVSGYRRPFRLLPY 375
Query: 335 DARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPN 394
LT+DE+T L++L PLP HF LGRN QGLA +I+KLWEK +AKI VK G+ N
Sbjct: 376 GVSPTLTNDEMTTLKRLGRPLPCHFALGRNTKHQGLAASIVKLWEKCEIAKIAVKRGVQN 435
Query: 395 TDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGV 454
T++E MA ELK W LTGG LL R++ I+LYRGKDFLP V
Sbjct: 436 TNSELMAQELK-----W----------------LTGGTLLSRDREFIVLYRGKDFLPSAV 474
Query: 455 ENLIVER-------ERELQICQNHEEGARLK----AIETFHLPDEPLEKTSKAGTLSEFQ 503
+ I +R +R ++E LK DE + + LSE +
Sbjct: 475 SSAIEDRRKRGDMDKRWTDCITSNETSEELKDRSWRTTNAKSRDEIDDTNDRKHDLSENK 534
Query: 504 NIQSDFGDLKMGNREFELQLE--AEIEDLERELRKQERKLLLEQDP--DLEMITEEERQC 559
N++S +K + + + LE A+ E L EL K E + Q P D E ITEEER
Sbjct: 535 NLRSTDAAIKRTSIKLSMALEKKAKAEKLLSELEKSE----MSQQPEKDKEGITEEERYM 590
Query: 560 LHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAES 619
L KIG+K+ LL+G RGVFDG IE +H HWKYRE+ ++I K+K F V A++L AES
Sbjct: 591 LRKIGLKMKPFLLMGERGVFDGTIENMHLHWKYRELVKIICKEKSFQAVQAVARTLEAES 650
Query: 620 GGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKF--FR 677
GGIL++V+ + +G+AII+YRGKNY RP L LLSKRQA++RSLE QR SLK R
Sbjct: 651 GGILVAVEGVSKGYAIILYRGKNYTRPACLRPPTLLSKRQAMKRSLEAQRRESLKLHVLR 710
Query: 678 IPETAGHLQ----------------------FENQTYLPKKAKLLAHLPLYCLLSQISSV 715
+ HL+ F + + P K + + HL + +S +++
Sbjct: 711 LTSNIDHLKLQLVSLTFLNSFDCFYSPSTFLFVGKYFQPMKFRKVIHLQYHPTISTTTTI 770
Query: 716 RIYF------PSSSDSSLQ 728
YF P+ +DS L+
Sbjct: 771 EKYFTYELEEPARTDSELK 789
>gi|359484307|ref|XP_002279505.2| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 884
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 249/612 (40%), Positives = 341/612 (55%), Gaps = 68/612 (11%)
Query: 96 GFGG-----KVPWLREDRF--VFRRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKV 148
GF G ++PW R + V R R AE M+ L RLK+ A +M + +KV
Sbjct: 229 GFSGNSSLIELPWKRREGLQPVERDGWGRRNTRMAERMVPEHELRRLKNIALRMLERIKV 288
Query: 149 KKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVV 208
AGVT+S+V I WR++E+ +KF+ P NM R EILE +TGGLVIW + V+
Sbjct: 289 GAAGVTQSLVDAIHEKWRKDEVVKLKFEGPSSCNMKRTHEILETRTGGLVIWRTGSSVVL 348
Query: 209 YRGDGSKSSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTAT-LDQNRSLKD--- 264
YRG K C +S QE VN+S + A + Q+ +KD
Sbjct: 349 YRGMAYKLH---CVQSYIKQE-----------RDNVNISEYSQDAANVIIQDIGVKDIVK 394
Query: 265 GEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPG 324
E+ + S K+L ++ + E + LLD LGPRF DW +PLPVD DLLP VV
Sbjct: 395 TTESVISDSARYLKDLSEEELMDLSELNHLLDELGPRFKDWSGREPLPVDADLLPSVVHE 454
Query: 325 FKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVA 384
+KPPFRL P R L + E+T++R+LA +P HF LGR+R LQGLA A++KLWE+S +A
Sbjct: 455 YKPPFRLLPYGMRHCLRNREMTFIRRLARTMPPHFALGRSRELQGLAMAMVKLWERSAIA 514
Query: 385 KITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILY 444
KI +K G+ NT N++MA ELK +LTGG L+ RNK I+ Y
Sbjct: 515 KIAIKRGVQNTCNDRMAEELK---------------------NLTGGTLVSRNKDYIVFY 553
Query: 445 RGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQN 504
RG DFLP V + ER + + Q+ EE AR +A + AGTL+E
Sbjct: 554 RGNDFLPPHVMEALKERRKLRDLQQDEEEQARHRASALIDSKARSAKGPLVAGTLAETLA 613
Query: 505 IQSDFG------DLKMGNREFEL---------------QLEAEIEDLERELRKQERKLLL 543
S +G D+ R+ L +A+++ E+ LRK + L
Sbjct: 614 ATSRWGSEPSEEDVGKMIRDSALARHASLVRYVGKKLAHAKAKLKKTEKALRKVQEDLEP 673
Query: 544 EQDP-DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQ 602
+ P DLE +++EER KIG+ + LLLG RG+FDG +E +H HWKYRE+ ++I K
Sbjct: 674 AELPMDLETLSDEERFLFRKIGLSMKPFLLLGTRGIFDGTVENMHLHWKYRELVKIIVKG 733
Query: 603 KLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALR 662
K FAQV + A SL AESGG+L+SVD+ +G+AII+YRGKNY+RP L +NLL+KRQAL
Sbjct: 734 KNFAQVKHIAISLEAESGGVLVSVDRTPKGYAIIVYRGKNYQRPHALRPKNLLTKRQALA 793
Query: 663 RSLEMQRLGSLK 674
RS+E+QR +LK
Sbjct: 794 RSIELQRHEALK 805
>gi|297738658|emb|CBI27903.3| unnamed protein product [Vitis vinifera]
Length = 881
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 249/612 (40%), Positives = 341/612 (55%), Gaps = 68/612 (11%)
Query: 96 GFGG-----KVPWLREDRF--VFRRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKV 148
GF G ++PW R + V R R AE M+ L RLK+ A +M + +KV
Sbjct: 226 GFSGNSSLIELPWKRREGLQPVERDGWGRRNTRMAERMVPEHELRRLKNIALRMLERIKV 285
Query: 149 KKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVV 208
AGVT+S+V I WR++E+ +KF+ P NM R EILE +TGGLVIW + V+
Sbjct: 286 GAAGVTQSLVDAIHEKWRKDEVVKLKFEGPSSCNMKRTHEILETRTGGLVIWRTGSSVVL 345
Query: 209 YRGDGSKSSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTAT-LDQNRSLKD--- 264
YRG K C +S QE VN+S + A + Q+ +KD
Sbjct: 346 YRGMAYKLH---CVQSYIKQE-----------RDNVNISEYSQDAANVIIQDIGVKDIVK 391
Query: 265 GEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPG 324
E+ + S K+L ++ + E + LLD LGPRF DW +PLPVD DLLP VV
Sbjct: 392 TTESVISDSARYLKDLSEEELMDLSELNHLLDELGPRFKDWSGREPLPVDADLLPSVVHE 451
Query: 325 FKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVA 384
+KPPFRL P R L + E+T++R+LA +P HF LGR+R LQGLA A++KLWE+S +A
Sbjct: 452 YKPPFRLLPYGMRHCLRNREMTFIRRLARTMPPHFALGRSRELQGLAMAMVKLWERSAIA 511
Query: 385 KITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILY 444
KI +K G+ NT N++MA ELK +LTGG L+ RNK I+ Y
Sbjct: 512 KIAIKRGVQNTCNDRMAEELK---------------------NLTGGTLVSRNKDYIVFY 550
Query: 445 RGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQN 504
RG DFLP V + ER + + Q+ EE AR +A + AGTL+E
Sbjct: 551 RGNDFLPPHVMEALKERRKLRDLQQDEEEQARHRASALIDSKARSAKGPLVAGTLAETLA 610
Query: 505 IQSDFG------DLKMGNREFEL---------------QLEAEIEDLERELRKQERKLLL 543
S +G D+ R+ L +A+++ E+ LRK + L
Sbjct: 611 ATSRWGSEPSEEDVGKMIRDSALARHASLVRYVGKKLAHAKAKLKKTEKALRKVQEDLEP 670
Query: 544 EQDP-DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQ 602
+ P DLE +++EER KIG+ + LLLG RG+FDG +E +H HWKYRE+ ++I K
Sbjct: 671 AELPMDLETLSDEERFLFRKIGLSMKPFLLLGTRGIFDGTVENMHLHWKYRELVKIIVKG 730
Query: 603 KLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALR 662
K FAQV + A SL AESGG+L+SVD+ +G+AII+YRGKNY+RP L +NLL+KRQAL
Sbjct: 731 KNFAQVKHIAISLEAESGGVLVSVDRTPKGYAIIVYRGKNYQRPHALRPKNLLTKRQALA 790
Query: 663 RSLEMQRLGSLK 674
RS+E+QR +LK
Sbjct: 791 RSIELQRHEALK 802
>gi|326492864|dbj|BAJ90288.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 630
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 251/607 (41%), Positives = 330/607 (54%), Gaps = 64/607 (10%)
Query: 2 PTAPWMRSPIVLQPDEIIKPSKPKTKKSFKKTDKGLTAKESGVRGKQAMKKIIENIEKLQ 61
P P SP QP E SKP ++ ++T +GV G + + ++ I +++
Sbjct: 25 PKTPATVSPS--QPVEAPPSSKPPQRQ--RETSTSTNPLSAGVPGGRTRRAVLGIIRRVR 80
Query: 62 KDQILDETQKKVMEKFE-----FKGCFEENVSHEEDLRGGFGGKVPW--LRED--RFVFR 112
++ D K + F EE EE G G PW R++ + R
Sbjct: 81 SLELSDPPSPKPIHSTRSAVPLFHLPIEE-CRGEEAGGDGNGRPAPWSAARDEGLKAALR 139
Query: 113 RMKKERMVTKAETMLDGELLERLKDEARKMRK-WVKVKKAGVTESVVFEIRLAWRRN-EL 170
R KK R T AE +LD L+RL+ AR W++ KKAGVT+ VV ++ W EL
Sbjct: 140 RQKKARQPTPAERLLDPAELDRLRRAARGTGDGWLRAKKAGVTDEVVEDVCRVWSGGQEL 199
Query: 171 AMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRS-ADDQE 229
A V+ PL R MDRAREILE+K+GGLV+WTK D H VYRG ++K +S AD Q
Sbjct: 200 AAVRVVEPLRRCMDRAREILEIKSGGLVVWTKGDVHFVYRGSSYLENIKHRQKSIADIQR 259
Query: 230 APLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYER 289
PL K T + K + S + +T D + G + SL + + ++ +LYER
Sbjct: 260 VPLEKCTAPGPQWK-HESNAEPSTNHNDDAHGVFRGIDPSLAVHAYEEP---VEGTLYER 315
Query: 290 EGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLR 349
E +RLLD LGPRFVDWW PLPVD DLLPEVVPGFK PFR PP R L D+ELTYLR
Sbjct: 316 EVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVRPTLADEELTYLR 375
Query: 350 KLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLA 409
KLA PLPTHF LGRN LQGLA A+LKLWEKSL+AKI VK GI NT+NEQMA LK
Sbjct: 376 KLARPLPTHFALGRNTRLQGLAAAVLKLWEKSLIAKIAVKVGIQNTNNEQMAWNLK---- 431
Query: 410 KWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQ 469
HLTGG ++LRNK +ILYRGKDFLP GV+ ++E+E + Q
Sbjct: 432 -----------------HLTGGTIILRNKDFVILYRGKDFLPGGVKQSVIEQEARVYAQQ 474
Query: 470 NHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIED 529
EE ARL +++ + + S G+ +Q+ Q + N ++LEAE
Sbjct: 475 VKEEEARLMVMDSLKMFAGLPSEESSVGSFRGYQDFQLNHVQETTENNMALIELEAEKHR 534
Query: 530 LERELRKQERKLLL----------------------EQDPDLEMITEEERQCLHKIGMKI 567
LE+EL+ QER+L + EQ D E++TEEER KIG+K+
Sbjct: 535 LEKELKDQERRLFILTKKIERSNEALAKLHNSWNPSEQSADKELLTEEERMIFRKIGLKM 594
Query: 568 NSNLLLG 574
+ ++LLG
Sbjct: 595 DEHVLLG 601
>gi|15229636|ref|NP_188468.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|11994102|dbj|BAB01105.1| unnamed protein product [Arabidopsis thaliana]
gi|17380904|gb|AAL36264.1| unknown protein [Arabidopsis thaliana]
gi|332642570|gb|AEE76091.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 848
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 230/584 (39%), Positives = 335/584 (57%), Gaps = 65/584 (11%)
Query: 115 KKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVK 174
++ R + AE ++ L RL+ + +R + + KAG+T++V+ +I WR+ EL +K
Sbjct: 231 RRARAPSLAELTVEDSELRRLRRDGMYLRVRINIPKAGLTQAVMEKIYDTWRKEELVRLK 290
Query: 175 FDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSK 234
F L R+M A EI+E +TGG+VIW VVYRG K + + A +E
Sbjct: 291 FHEVLARDMKTAHEIVERRTGGMVIWRAGSVMVVYRGLDYKGPPVISNQMAGPKE----- 345
Query: 235 STHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREG--D 292
++ ++ D+ + KD + L + KN +++ E E +
Sbjct: 346 -----------TLFVPDVSSAGDEATNAKDNQSAPLVIKDPIIKNPIRKENMTEEEVEFN 394
Query: 293 RLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLA 352
LLD LGPRF +WW LPVD DLLP +PG+K PFRL P RS LT+ E+T LRK+
Sbjct: 395 SLLDSLGPRFQEWWGTGVLPVDADLLPPTIPGYKTPFRLLPTGMRSNLTNAEMTNLRKIG 454
Query: 353 HPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWK 412
LP HF LGRNR QGLA AIL++WEKSL+AKI VK GI NT+N+ MA+E+K
Sbjct: 455 KTLPCHFALGRNRNHQGLAAAILQIWEKSLIAKIAVKRGIQNTNNKLMADEVKT------ 508
Query: 413 PNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHE 472
LTGGVLLLRNK+ I++YRGKDFLP V + ER+ + Q+ E
Sbjct: 509 ---------------LTGGVLLLRNKYYIVIYRGKDFLPSSVAATLAERQELTKEIQDVE 553
Query: 473 EGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFG-DLKMGNREFELQLEAEIEDLE 531
E R + IE + + ++AGTL+EF Q+ +G ++ +RE ++ + + +
Sbjct: 554 ERVRNREIEAVQPVGDKV--PAEAGTLAEFYEAQARWGKEITPDHREKMIEEASRVAN-A 610
Query: 532 RELRKQERKLLLEQ----------------------DPDLEMITEEERQCLHKIGMKINS 569
R +++ + KL L Q D D E+I+EEER K+G+K+ +
Sbjct: 611 RVVKRIQHKLNLAQSKFQRAEKLLSKIEASMIPNGPDYDQEVISEEERAMFRKVGLKMKA 670
Query: 570 NLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKL 629
L +G RGVFDGVIE +H HWK+RE+ ++I+KQK A V TA+ L ESGG+L++++K+
Sbjct: 671 YLPIGIRGVFDGVIENMHLHWKHRELVKLISKQKNQAFVEETARLLEYESGGVLVAIEKV 730
Query: 630 KEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSL 673
+G A+I YRGKNYRRP+ L +NLL+K +AL+RS+ MQR +L
Sbjct: 731 PKGFALIYYRGKNYRRPISLRPRNLLTKAKALKRSIAMQRHEAL 774
>gi|357496109|ref|XP_003618343.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355493358|gb|AES74561.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 1096
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 234/570 (41%), Positives = 326/570 (57%), Gaps = 58/570 (10%)
Query: 125 TMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCR-NM 183
++ DGE+L RL++ +M++ +KV KAGVTE +V I WRR+E+ V + LCR NM
Sbjct: 150 SLTDGEIL-RLRELGYQMKQKIKVGKAGVTEGIVNGIHERWRRSEVVRVVCE-DLCRINM 207
Query: 184 DRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEA----PLSKSTHLH 239
R +ILE KTGGLV+W ++YRG K + ++E+ P+
Sbjct: 208 KRTHDILERKTGGLVVWRSGSKIILYRGIDYKYPYFLSDEVLREEESDALQPMDSDDESI 267
Query: 240 LEKKVNVSWIKSNT-ATLDQN-RSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDG 297
E+K + S + S T A N +++K + T + L + L E E D LL+G
Sbjct: 268 DERKTHSSEMSSATHAGQSSNIKTVKPALVQGVGTPNRVRFQLPGEAELLE-EVDSLLEG 326
Query: 298 LGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPT 357
LGPRF DWW + P+PVD DLLP V+PGF+PPFRL P +SKLTDDE+T L++L LP
Sbjct: 327 LGPRFTDWWGYDPVPVDADLLPAVIPGFRPPFRLLPYGVQSKLTDDEMTTLKRLGRTLPC 386
Query: 358 HFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKF 417
HF LGRN LQG+A AI+K WE+ + I VK G+ NT N +MA E+K
Sbjct: 387 HFALGRNWKLQGVAAAIIKFWERCEIVNIAVKRGVQNTSNRKMAEEIK------------ 434
Query: 418 SDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVER-----------ERELQ 466
+LTGG LL RNK +I++YRGKDFLP V + I +R R
Sbjct: 435 ---------YLTGGTLLSRNKEVIVIYRGKDFLPAAVSSAIKKRWKAVKNKENAENRSAI 485
Query: 467 ICQNHEEGARLKAIETFHLPDEPLEKTSKAGTL-SEFQNIQSDFGDLKMGNREFELQLEA 525
+H E + I+ ++PL +KA + F+ Q+ L+ +
Sbjct: 486 TASSHSERKHMTFIKDKETIEKPLLMKAKAAIQRTSFKLAQA-------------LEKKE 532
Query: 526 EIEDLERELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEG 585
+ E L L K E L E++ D E ITEEER L +IG+K+ LLLGRRGVFDG +E
Sbjct: 533 KAEKLLESLEKDES--LQEEEIDKESITEEERYMLRRIGLKMKPFLLLGRRGVFDGTVEN 590
Query: 586 LHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRR 645
+H HWKYRE+ ++I Q+ TA++L AESGGIL++V+++ +G+AII+YRGKNY R
Sbjct: 591 MHLHWKYRELVKIICNQESVEYAHQTARTLEAESGGILVAVERVNKGYAIIVYRGKNYSR 650
Query: 646 PLKLMTQNLLSKRQALRRSLEMQRLGSLKF 675
P L + LL+K+QAL+RS+E QR +LK
Sbjct: 651 PDSLRPRTLLNKKQALKRSIEAQRREALKL 680
>gi|255546121|ref|XP_002514120.1| conserved hypothetical protein [Ricinus communis]
gi|223546576|gb|EEF48074.1| conserved hypothetical protein [Ricinus communis]
Length = 930
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 252/621 (40%), Positives = 342/621 (55%), Gaps = 77/621 (12%)
Query: 95 GGFGGKV-----------PWLREDRF--VFRRMKKERMVTK-AETMLDGELLERLKDEAR 140
GG+G +V PW +E V ++ +R T+ AE ML L+RL++ A
Sbjct: 280 GGYGVQVSYDDNSSSIELPWEKERVMESVEGYLRGKRSNTELAERMLPEHELKRLRNVAL 339
Query: 141 KMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIW 200
+M + +KV AG+ + +V + WR +E+ +KF+ PL NM R EILE +TGGLVIW
Sbjct: 340 RMYERIKVGAAGINQDLVDAVHEKWRLDEVVKLKFEEPLSFNMRRTHEILENRTGGLVIW 399
Query: 201 TKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQN- 259
+ V+YRG K C RS Q+ K H E+ + SN ATL+
Sbjct: 400 RSGSSVVLYRGISYKLH---CVRSFSKQDEA-GKEILAHPEE------VTSN-ATLNIGV 448
Query: 260 RSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLP 319
+ E+ +P K+L ++ E ++ LD LGPRF DW +PLPVD DLL
Sbjct: 449 KHFIGTTESYIPDRAKYLKDLSREELTDFTELNQFLDELGPRFEDWCGREPLPVDADLLL 508
Query: 320 EVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWE 379
V PG+KPPFRL P R LTD E+T R+LA +P HF LGRNR LQGLA AI+KLWE
Sbjct: 509 AVDPGYKPPFRLLPYGVRHCLTDKEMTIFRRLARTVPPHFALGRNRQLQGLAKAIVKLWE 568
Query: 380 KSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKF 439
+S + KI +K G+ NT NE+MA ELK LTGG+LL RNK
Sbjct: 569 RSAIVKIAIKRGVQNTRNERMAEELKV---------------------LTGGILLSRNKE 607
Query: 440 LIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSK---- 495
I+ YRG DFLP + + ER++ + Q+ EE AR A+ + E KTSK
Sbjct: 608 YIVFYRGNDFLPPAIVKTLKERKKLTYLKQDEEEQARQMALASV----ESSAKTSKVPLV 663
Query: 496 AGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLERELRKQERKLLLEQ---------- 545
AGTL+E S + D + E+ EA + ++ E KL L +
Sbjct: 664 AGTLAETVAATSHWRDQRGSPDIDEMLREAVLAKRASLVKHLENKLALAKGKLRKAEKAL 723
Query: 546 -------DP-----DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYR 593
DP DLE I++EER KIG+ + L LG+RGV+DG IE +H HWKYR
Sbjct: 724 AKVHEHLDPSGLPTDLETISDEERFLFRKIGLSMKPYLFLGKRGVYDGTIENMHLHWKYR 783
Query: 594 EVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQN 653
E+ +VI + K FAQV + A SL AESGG+L+S+++ +G+AII+YRGKNY P + +N
Sbjct: 784 ELVKVIVRGKSFAQVKHIAISLEAESGGVLVSIERTTKGYAIIVYRGKNYLHPEVMRPKN 843
Query: 654 LLSKRQALRRSLEMQRLGSLK 674
LL+KRQAL RS+E+QR +LK
Sbjct: 844 LLTKRQALVRSIELQRREALK 864
>gi|297800788|ref|XP_002868278.1| hypothetical protein ARALYDRAFT_330061 [Arabidopsis lyrata subsp.
lyrata]
gi|297314114|gb|EFH44537.1| hypothetical protein ARALYDRAFT_330061 [Arabidopsis lyrata subsp.
lyrata]
Length = 919
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 264/739 (35%), Positives = 390/739 (52%), Gaps = 108/739 (14%)
Query: 19 IKPSKP--KTKKSFKKTDKGLTAKESGVR------GKQAMKKIIENIEK---LQKDQILD 67
+PSK +K + +D G+ + E+ R G M+KI+E ++K + DQ D
Sbjct: 77 FRPSKVVLNRRKEERFSDLGVMSGENSSRSSDVGGGGSTMEKIVEKLKKYGFVDDDQFQD 136
Query: 68 ---ETQKKVMEKF--------EFKGCFEENVSHEEDLRGGFGG---KVPWLREDRFVFRR 113
E ++++ E+ E +G F EE G FGG K PW + +
Sbjct: 137 KEVEQERRIEERAVEDRFYVKEGRGGF-----SEESPFGVFGGNEVKFPWEKVSSMEKKE 191
Query: 114 M-------KKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWR 166
+ KKE + AE L L RL++ + + ++V AGVT++VV I+ W+
Sbjct: 192 LVNGEWTAKKESRYSLAERTLSESELNRLRNVMFRTKSKMRVTGAGVTQAVVDAIQEKWK 251
Query: 167 RNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSAD 226
+E+ +K + NM R EILE KTGGLVIW + +Y G +
Sbjct: 252 SSEIVRLKIEGASALNMRRMHEILERKTGGLVIWRSGTSIALYNYKG-----------GN 300
Query: 227 DQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEE-NSLPTSIFMDKNLRIDKS 285
+++ + + ++ + S + +NT+T+DQ+ L + PT + +
Sbjct: 301 NRDGSGNMNKQIYRRAETLQSSLPTNTSTVDQSVQLVHLPQLEKEPTVVGNKDRTSPHEV 360
Query: 286 LYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDEL 345
YE E + LL+GLGPR+ DW PLPVD DLLP +VP ++PPFR+ P RS L E
Sbjct: 361 EYEDEINELLEGLGPRYTDWQGGYPLPVDADLLPGIVPVYEPPFRVLPYGVRSTLGTKEA 420
Query: 346 TYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELK 405
T LR++A LP HF LGR+R LQGLATA++KLW+KSL+AK+ +K G+ T +E+MA ++K
Sbjct: 421 TSLRRIATVLPPHFALGRSRQLQGLATAMVKLWQKSLIAKVALKRGVQLTTSERMAEDIK 480
Query: 406 ASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVEREREL 465
+ F D ++L TGG+LL RNK ++ YRGK FL V ++E+ER +
Sbjct: 481 VIRIHIRVTF----DCLIL----TGGMLLSRNKDFLVFYRGKSFLSPEVAEALMEKERLV 532
Query: 466 QICQNHEEGARLKAIETFHLPD-----------EPLEKTSK-----------------AG 497
+ Q+ EE ARL+A +P + EK S+ AG
Sbjct: 533 RTLQDEEEQARLRASSALVVPSIKANQNLARTLQDEEKQSRPSTLVVPSTKANQNLVSAG 592
Query: 498 TLSEFQNIQSDFG-DLKMGNREFELQLEAE-------IEDLERELRKQERKLL------- 542
TL E + +G L + E++ E E + LER+L E+KLL
Sbjct: 593 TLGETLDATGKWGKSLDNDDHVEEMKQEVERMRSAKLVRKLERKLAFAEKKLLKAERALA 652
Query: 543 --------LEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYRE 594
EQ DLE ITEEER K+G+++ + LLLGRRGVFDG +E +H HWKYRE
Sbjct: 653 KVEESLKPAEQRTDLEGITEEERFMFQKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRE 712
Query: 595 VARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNL 654
+ +++ K K A +L AESGGIL+SVDK+ +G+A+I+YRGK+Y+RP L +NL
Sbjct: 713 LIKILVKAKSLEGAKKVAMALEAESGGILVSVDKISKGYAVIVYRGKDYKRPTTLRPKNL 772
Query: 655 LSKRQALRRSLEMQRLGSL 673
L+KR+AL RSLE+Q+ +L
Sbjct: 773 LTKRKALARSLELQKREAL 791
>gi|255552728|ref|XP_002517407.1| conserved hypothetical protein [Ricinus communis]
gi|223543418|gb|EEF44949.1| conserved hypothetical protein [Ricinus communis]
Length = 1009
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 244/615 (39%), Positives = 341/615 (55%), Gaps = 65/615 (10%)
Query: 94 RGGFGGKVPWLREDRFVFRRMKKER--------MVTKAETMLDGELLERLKDEARKMRKW 145
R G G + E R +++KKER + T AE L E L RL+ ++
Sbjct: 120 RPGSGNAILRYHELR---KQVKKEREDKKREAKVPTLAELSLSEEELRRLRRIGIAEKRK 176
Query: 146 VKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCR-NMDRAREILELKTGGLVIWTKKD 204
+KV KAG+TE +V I WRR+E+ + + LCR NM R ++LE KTGGLV+W
Sbjct: 177 LKVGKAGITEGIVNGIHERWRRSEVVKIVCE-DLCRMNMKRTHDLLERKTGGLVVWRAGS 235
Query: 205 AHVVYRGDGSKSSVKMCPRSA-DDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLK 263
V+YRG + + +D + TH H + IKS ++++D +
Sbjct: 236 KIVLYRGVNYIYPYFLSDNTTENDTSIDAVQDTHKHNDS----DKIKSCSSSVDGVKFSG 291
Query: 264 DGEEN-----SLPTSIFMDKNLRID---KSLYEREGDRLLDGLGPRFVDWWMWKPLPVDG 315
N +L + + +R ++ E D LL+GLGPRF DWW ++PLPVD
Sbjct: 292 PSPTNKAVRPALIQGVGLPNRVRFQLPGEAQLAEEVDSLLEGLGPRFSDWWGYEPLPVDA 351
Query: 316 DLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAIL 375
DLLP +VPG++ PFRL P + LT+DE+T L++L PLP HFVLGRNR LQGLA +I+
Sbjct: 352 DLLPAIVPGYQKPFRLLPYGIKPILTNDEMTTLKRLGRPLPCHFVLGRNRKLQGLAASII 411
Query: 376 KLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLL 435
KLWEK +AKI VK G+ NT++E MA ELK LTGG LL
Sbjct: 412 KLWEKCEIAKIAVKRGVQNTNSEMMAEELK---------------------RLTGGTLLS 450
Query: 436 RNKFLIILYRGKDFLPCGVENLIVEREREL-QICQNHEEGARLKAIETFHLPDEPLEKTS 494
R++ I+LYRGKDFLP V + I ER + + + + + + ET ++ + TS
Sbjct: 451 RDREFIVLYRGKDFLPSAVSSAIKERRNHVFNVAKERTDNS--TSAETAKEAEDVEDGTS 508
Query: 495 KAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLER-----ELRKQERKLLLE----- 544
+G+ EF DL R+ EA R E + + KLL E
Sbjct: 509 NSGSQDEFHGNNEQSYDLSK-QRKLSFTKEAIKRTSIRLSMALEKKAKAVKLLAEIENSE 567
Query: 545 --QDPDL--EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVIT 600
Q P++ E IT+EER L K+G+K+ LL+GRRGVFDG IE +H HWKYRE+ ++I
Sbjct: 568 MSQQPEIDKEGITDEERYMLRKVGLKMKPFLLIGRRGVFDGTIENMHLHWKYRELVKIIC 627
Query: 601 KQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQA 660
K++ V A+SL AESGGIL++V+++ +G+AI++YRGKNY+RP L LLSKR+A
Sbjct: 628 KERSLNAVHEVAQSLEAESGGILVAVERVSKGYAIVVYRGKNYQRPALLRPPTLLSKREA 687
Query: 661 LRRSLEMQRLGSLKF 675
++RSLE QR SLK
Sbjct: 688 MKRSLEAQRRESLKL 702
>gi|449432614|ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
gi|449504099|ref|XP_004162252.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 874
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 257/709 (36%), Positives = 370/709 (52%), Gaps = 107/709 (15%)
Query: 26 TKKSFKKTDKGLTAKESGVRGKQAMKKIIENIEKLQKDQILDETQKKVMEKFEFKGCFEE 85
+ F K+ + + + RG M+KI+ ++K I DE ++K E+ KG E+
Sbjct: 116 SSTGFSKSYRASSRIDDDGRGGSTMEKIVRKLKKF--GYIDDENKEKGEERAIEKGSVED 173
Query: 86 NVSHEEDL----RGGFGGKVPWLRED--------RFVFRRMKKERMVTKAETMLDGEL-- 131
+ EE + RGGF + P E+ RF + + KE+ T ++ G
Sbjct: 174 ILYIEEGMLPNTRGGFSKESPMGDENMFGSDGEVRFPWEK-PKEKEDTHGDSTRRGSASL 232
Query: 132 ---------LERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRN 182
L RL++ + R +K+ GVT++VV I W+ +E+ +K P N
Sbjct: 233 AQLTLPEPELRRLRNLTFQKRHKMKIGGGGVTQAVVDVIHEKWKSSEIVRLKILGPPALN 292
Query: 183 MDRAREILELKTGGLVIWTKKDAHVVYRGDG--------------SKSSVKMCPRSADDQ 228
M R EILE KTGGLVIW + +YRG ++ + P++
Sbjct: 293 MKRMHEILERKTGGLVIWRSGTSLSLYRGVSYELPEAPQFNKRIYKRNEITALPKTGAST 352
Query: 229 EAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYE 288
AP S+H N L Q R+ E S+ ++ ++ + YE
Sbjct: 353 IAPSESSSH-------------RNVYALQQKRA-----ETSIEGEHCSEQLTKVQVN-YE 393
Query: 289 REGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYL 348
E ++LLDGLGPR+ DW PLPVD D+LP VVP ++PPFR+ P RS + E T L
Sbjct: 394 DEVNKLLDGLGPRYTDWPGLDPLPVDADMLPGVVPDYEPPFRILPYGVRSSIGVKEATAL 453
Query: 349 RKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASL 408
++LA LP HF LGRNR LQGLA A+ KLWE+SL+AKI +K G+ T +E+MA E+K
Sbjct: 454 KRLARRLPPHFALGRNRQLQGLAIAMTKLWERSLIAKIALKRGVQLTTSERMAEEIK--- 510
Query: 409 AKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQIC 468
LTGG+LL RNK ++ YRGK FL V ++ERER +
Sbjct: 511 ------------------KLTGGMLLSRNKDFLVFYRGKSFLSPEVTEALLERERLAKSL 552
Query: 469 QNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAE-- 526
Q+ EE ARLKA F +P E E++ AG+L E + + +G + + EAE
Sbjct: 553 QDKEEQARLKA-SAFVVPIEKTEQSGTAGSLEETLDADARWGKALDDKHKENVMREAEQL 611
Query: 527 -----IEDLERELRKQERKLL-----------------LEQDPDLEMITEEERQCLHKIG 564
+ LER+L ERKL+ + +PD ITEEER K+G
Sbjct: 612 RHTDLVRKLERKLAFAERKLVKAERTLAKVEAFMTPAKRQAEPD--SITEEERFMFRKLG 669
Query: 565 MKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILI 624
+++ + LLLGRR VFDG +E +H HWKYRE+ +++ K F V A L AESGG+L+
Sbjct: 670 LRMKAFLLLGRREVFDGTVENMHLHWKYRELVKIMIKANSFDHVKNIALQLEAESGGVLV 729
Query: 625 SVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSL 673
S+DK+ +G+AII+YRGK+Y+RP L +NLL+KR+AL RS+E+QR +L
Sbjct: 730 SIDKVSKGYAIIVYRGKDYKRPSLLRPKNLLTKRKALARSIELQRHEAL 778
>gi|224111046|ref|XP_002315729.1| predicted protein [Populus trichocarpa]
gi|222864769|gb|EEF01900.1| predicted protein [Populus trichocarpa]
Length = 894
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 253/680 (37%), Positives = 364/680 (53%), Gaps = 87/680 (12%)
Query: 49 AMKKIIENIEKL-QKDQILDETQKKVMEKFEFKGCFEENVSHEEDL----RGGFGGKVPW 103
M+KI+E ++K D ++E ++++ E+ KG E+ EE + RGGF + P
Sbjct: 110 TMEKIVEKLKKHGYMDGDVNENKERMQERVIEKGSVEDIFYVEEGMLPNARGGFSKESPL 169
Query: 104 LRED--------RFVFRRMKKER-----------MVTKAETMLDGELLERLKDEARKMRK 144
ED RF + + KKE + AE L L RL++ +
Sbjct: 170 GVEDVFRSDGEVRFPWEKPKKEEDEGKWTARSKSRTSLAELTLPESELRRLRNLTYGTKS 229
Query: 145 WVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKD 204
+V GVT+ VV I W+ +E+A VK + NM R EILE KTGGLVIW
Sbjct: 230 KTRVGGRGVTQEVVDAIHDKWKTSEIARVKVEGAPALNMKRMHEILENKTGGLVIWRSGA 289
Query: 205 AHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKD 264
+YRG S +D K E N ++ Q+++ D
Sbjct: 290 TVSLYRG-----------VSYEDPALKWKKRIFKKKETSSNSLPAATSITIGSQSKNSPD 338
Query: 265 GE------ENSLPTSIFMDKNLRIDKSL-YEREGDRLLDGLGPRFVDWWMWKPLPVDGDL 317
E + + K + + YE E D+LLDGLGPR+ DW PLPVD D+
Sbjct: 339 NEIHAPRPKTEINVEAANQKETKTQTDVKYEDEVDKLLDGLGPRYTDWPGLDPLPVDADM 398
Query: 318 LPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKL 377
LP V+PG++PPFR+ P R L + T LR+LA LP HF +GR+R LQGLA A++KL
Sbjct: 399 LPGVIPGYQPPFRILPYGVRPTLGRQDSTSLRRLARVLPPHFAVGRSRQLQGLAVAMIKL 458
Query: 378 WEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRN 437
WEKS + K+ +K G+ T +E+MA ++K LTGG+LL RN
Sbjct: 459 WEKSSIVKVALKRGVQLTTSERMAEDIK---------------------KLTGGLLLSRN 497
Query: 438 KFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAG 497
K ++ YRGKDFL V ++ERER + Q+ EE ARL+A DE +E++ AG
Sbjct: 498 KDFLVFYRGKDFLSPEVSEALLERERLAKSLQDEEEQARLRASALVIPSDEIMEESGIAG 557
Query: 498 TLSEFQNIQSDFGDLKMGN-------REFEL--------QLEAEIEDLERELRKQERKL- 541
+L E + + +G ++ + RE E+ +LE ++ +R+LR+ ER L
Sbjct: 558 SLEETLDADAKWGK-RLDDCHKEKIIREAEIVRHASIVRRLEKKLAFAQRKLRRAERTLN 616
Query: 542 -------LLEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYRE 594
E+ D E IT+EER K+G+++ + LLLGRRGVFDG +E +H HWKYRE
Sbjct: 617 KVEGFLKPSERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRE 676
Query: 595 VARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNL 654
+ ++I K K F QV A +L AESGG+L+SVDK+ +G+AII+YRGK+Y+RP L +NL
Sbjct: 677 LVKIILKAKSFEQVKKIALALEAESGGVLVSVDKISKGYAIIVYRGKDYQRPSMLRPKNL 736
Query: 655 LSKRQALRRSLEMQRLGSLK 674
L+KR+AL RS+E+QR +L+
Sbjct: 737 LTKRKALARSIEIQRSEALQ 756
>gi|6692258|gb|AAF24608.1|AC010870_1 unknown protein [Arabidopsis thaliana]
Length = 1020
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 239/576 (41%), Positives = 321/576 (55%), Gaps = 29/576 (5%)
Query: 113 RMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAM 172
R K+E++ + AE L L RL+ ++ K +K+ KAG+TE +V I WR E+
Sbjct: 152 RKKEEKVPSLAELTLPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVK 211
Query: 173 VKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPL 232
+ + NM R ++LE KTGGLVIW ++YRG + + R + A
Sbjct: 212 IFCEDISRMNMKRTHDVLETKTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLAHEAASG 271
Query: 233 SKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGD 292
+ S + I ++A N+ +K + + + L + L E E D
Sbjct: 272 ASSMDQGVVDSREKQSIAESSAPSITNKMVKPMLTQGVGSPDKVRFQLPGEVQLVE-EAD 330
Query: 293 RLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLA 352
RLL+GLGPRF DWW + PLPVDGDLLP VVP ++ PFRL P KLTDDE+T +R+L
Sbjct: 331 RLLEGLGPRFTDWWAYDPLPVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLG 390
Query: 353 HPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWK 412
PLP HF LGRNR LQGLA AI+KLWEK +AKI VK G+ NT++E MA ELK
Sbjct: 391 RPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSELMAEELKVV----- 445
Query: 413 PNFKFSDDGVLL-MQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNH 471
G+LL ++ LTGG L+ R+K I+LYRGKDFLP V + I ER R+ I +N
Sbjct: 446 --------GLLLVIKWLTGGTLISRDKDFIVLYRGKDFLPSAVSSAIEERRRQTMIMENS 497
Query: 472 E-EGARLKAIETFHLP-----DEPLEKTSKAGTLSEFQ----NIQSDFGDLKMGNREFEL 521
G +L E P D LE + + Q S L+ + + +
Sbjct: 498 SVHGNKLTENEEEIKPRAVKEDIELEAKDQKDHIQTHQMKSRQRNSPEAILEKTSMKLSM 557
Query: 522 QLE--AEIEDLERELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVF 579
LE A E + +L +E L D D E IT +E+ L KIG+K+ LLLGRRGVF
Sbjct: 558 ALEKKANAEKVLADLENRESPQL--SDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVF 615
Query: 580 DGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYR 639
DG IE +H HWKYRE+ ++I + A+ L AESGGIL++V+ + +G+AII+YR
Sbjct: 616 DGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYR 675
Query: 640 GKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKF 675
GKNY RP L Q LLSKR+AL+RS+E QR SLK
Sbjct: 676 GKNYERPQCLRPQTLLSKREALKRSVEAQRRKSLKL 711
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 77/151 (50%), Gaps = 11/151 (7%)
Query: 535 RKQERKLLLEQDPDLEMIT--EEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKY 592
RK+E K+ P L +T E + L +G+++ L +G+ G+ +G++ G+H+ W+
Sbjct: 152 RKKEEKV-----PSLAELTLPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRT 206
Query: 593 REVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQ 652
EV ++ + + T L ++GG++I + G I++YRG NY+ P + +
Sbjct: 207 TEVVKIFCEDISRMNMKRTHDVLETKTGGLVI----WRSGSKILLYRGVNYQYPYFVSDR 262
Query: 653 NLLSKRQALRRSLEMQRLGSLKFFRIPETAG 683
+L + + S++ + S + I E++
Sbjct: 263 DLAHEAASGASSMDQGVVDSREKQSIAESSA 293
>gi|147852748|emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]
Length = 902
Score = 371 bits (952), Expect = e-99, Method: Compositional matrix adjust.
Identities = 247/668 (36%), Positives = 362/668 (54%), Gaps = 67/668 (10%)
Query: 49 AMKKIIENIEKLQKDQILDETQKKVMEKFEFKGCFEENVSHEEDL----RGGFGGKVPWL 104
M+KI+E ++K + ET++ V E+ KG E+ EE + +GGF P
Sbjct: 123 TMEKIVEKLKKFGYMDDVKETKENVQERIIEKGSIEDIFYIEEGILPNPQGGFSLDSPLG 182
Query: 105 RED--------RFVFRRMKKERMVTK-------AETMLDGELLERLKDEARKMRKWVKVK 149
E+ RF + R K E + AE L L RL++ + + K+
Sbjct: 183 VENKGDGNGEVRFPWERPKVEEGSVRIKSRTSLAELTLPESELRRLRNLTMRTKNKTKIG 242
Query: 150 KAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVY 209
GVT++VV IR W+ +E+ +K + NM R EILE KTGGLVIW + +Y
Sbjct: 243 GGGVTQAVVDMIREKWKTSEIVKLKCEGAAALNMRRIHEILERKTGGLVIWRSGTSVSLY 302
Query: 210 RGDGSKSSVKMCPRSADDQEAPLSKSTHLHLEK-KVNVSWIKSNTATLDQNRSLKDGEEN 268
RG + V++ R E S + + ++ + N + N+++ +
Sbjct: 303 RGVSYEVPVQLNKRVYKKNETSHSSFSSITPNSFAISSNKTSGNAPAVGSNQNVH-ASQA 361
Query: 269 SLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPP 328
+L + +K+ + YE E D+LLDGLGPR+ DW PLP+D DLLP + G++PP
Sbjct: 362 TLXITDGENKDTESEVK-YEDEIDKLLDGLGPRYTDWPXCDPLPIDADLLPGKIHGYQPP 420
Query: 329 FRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITV 388
FR+ P RS L E T LR+LA LP HF LGR+R L+GLA A++KLWE+S +AK+ +
Sbjct: 421 FRILPYGVRSSLGLKEATALRRLARVLPPHFALGRSRQLEGLAMAMIKLWERSSIAKVAL 480
Query: 389 KWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKD 448
K G+ T +E+MA ++K LTGGVLL RNK ++ YRGK+
Sbjct: 481 KRGVQLTTSERMAEDIKK---------------------LTGGVLLSRNKDFLVFYRGKN 519
Query: 449 FLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPDEPL-EKTSKAGTLSEFQNIQS 507
FL V ++ERER + Q+ EE ARL+A T P + E+ AGTL E +
Sbjct: 520 FLSSDVTEALLERERLAKALQDEEEQARLRA-STLITPTVGITEQVGSAGTLGETLEADA 578
Query: 508 DFG------DLKMGNREFELQLEAE-IEDLERELRKQERKLLLEQDP------------- 547
+G D + ++ E+ A + LER L ERKL+ ++
Sbjct: 579 RWGKRLDDHDKQKMLKKAEVARHANLVRKLERRLALAERKLMKAENALSKVEEFLKPANR 638
Query: 548 --DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLF 605
D E IT+EER K+G+++ + LLLGRRGVF G +E +H HWKYRE+ ++I K K F
Sbjct: 639 PADPESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTVENMHLHWKYRELVKIIVKAKTF 698
Query: 606 AQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSL 665
QV TA +L +ESGG+L+SVDK+ +G AI+++RGK+Y+RP L +NLL+KR+AL RS+
Sbjct: 699 DQVKKTALALESESGGVLVSVDKVSKGFAIVVFRGKDYQRPSTLRPKNLLTKRKALARSI 758
Query: 666 EMQRLGSL 673
E+QR +L
Sbjct: 759 ELQRREAL 766
>gi|30678323|ref|NP_186786.2| CRM family member 2 [Arabidopsis thaliana]
gi|22531018|gb|AAM97013.1| unknown protein [Arabidopsis thaliana]
gi|37202002|gb|AAQ89616.1| At3g01370 [Arabidopsis thaliana]
gi|332640136|gb|AEE73657.1| CRM family member 2 [Arabidopsis thaliana]
Length = 1011
Score = 371 bits (952), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 237/575 (41%), Positives = 316/575 (54%), Gaps = 36/575 (6%)
Query: 113 RMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAM 172
R K+E++ + AE L L RL+ ++ K +K+ KAG+TE +V I WR E+
Sbjct: 152 RKKEEKVPSLAELTLPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVK 211
Query: 173 VKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPL 232
+ + NM R ++LE KTGGLVIW ++YRG + + R + A
Sbjct: 212 IFCEDISRMNMKRTHDVLETKTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLAHEAASG 271
Query: 233 SKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGD 292
+ S + I ++A N+ +K + + + L + L E E D
Sbjct: 272 ASSMDQGVVDSREKQSIAESSAPSITNKMVKPMLTQGVGSPDKVRFQLPGEVQLVE-EAD 330
Query: 293 RLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLA 352
RLL+GLGPRF DWW + PLPVDGDLLP VVP ++ PFRL P KLTDDE+T +R+L
Sbjct: 331 RLLEGLGPRFTDWWAYDPLPVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLG 390
Query: 353 HPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWK 412
PLP HF LGRNR LQGLA AI+KLWEK +AKI VK G+ NT++E MA EL KW
Sbjct: 391 RPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSELMAEEL-----KW- 444
Query: 413 PNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHE 472
LTGG L+ R+K I+LYRGKDFLP V + I ER R+ I +N
Sbjct: 445 ---------------LTGGTLISRDKDFIVLYRGKDFLPSAVSSAIEERRRQTMIMENSS 489
Query: 473 -EGARLKAIETFHLP-----DEPLEKTSKAGTLSEFQ----NIQSDFGDLKMGNREFELQ 522
G +L E P D LE + + Q S L+ + + +
Sbjct: 490 VHGNKLTENEEEIKPRAVKEDIELEAKDQKDHIQTHQMKSRQRNSPEAILEKTSMKLSMA 549
Query: 523 LE--AEIEDLERELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFD 580
LE A E + +L +E L D D E IT +E+ L KIG+K+ LLLGRRGVFD
Sbjct: 550 LEKKANAEKVLADLENRESPQL--SDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFD 607
Query: 581 GVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRG 640
G IE +H HWKYRE+ ++I + A+ L AESGGIL++V+ + +G+AII+YRG
Sbjct: 608 GTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRG 667
Query: 641 KNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKF 675
KNY RP L Q LLSKR+AL+RS+E QR SLK
Sbjct: 668 KNYERPQCLRPQTLLSKREALKRSVEAQRRKSLKL 702
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 77/151 (50%), Gaps = 11/151 (7%)
Query: 535 RKQERKLLLEQDPDLEMIT--EEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKY 592
RK+E K+ P L +T E + L +G+++ L +G+ G+ +G++ G+H+ W+
Sbjct: 152 RKKEEKV-----PSLAELTLPPAELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRT 206
Query: 593 REVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQ 652
EV ++ + + T L ++GG++I + G I++YRG NY+ P + +
Sbjct: 207 TEVVKIFCEDISRMNMKRTHDVLETKTGGLVI----WRSGSKILLYRGVNYQYPYFVSDR 262
Query: 653 NLLSKRQALRRSLEMQRLGSLKFFRIPETAG 683
+L + + S++ + S + I E++
Sbjct: 263 DLAHEAASGASSMDQGVVDSREKQSIAESSA 293
>gi|225432918|ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic [Vitis vinifera]
gi|297737163|emb|CBI26364.3| unnamed protein product [Vitis vinifera]
Length = 902
Score = 370 bits (950), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 247/668 (36%), Positives = 362/668 (54%), Gaps = 67/668 (10%)
Query: 49 AMKKIIENIEKLQKDQILDETQKKVMEKFEFKGCFEENVSHEEDL----RGGFGGKVPWL 104
M+KI+E ++K + ET++ V E+ KG E+ EE + +GGF P
Sbjct: 123 TMEKIVEKLKKFGYMDDVKETKENVQERIIEKGSIEDIFYIEEGILPNPQGGFSLDSPLG 182
Query: 105 RED--------RFVFRRMKKERMVTK-------AETMLDGELLERLKDEARKMRKWVKVK 149
E+ RF + R K E + AE L L RL++ + + K+
Sbjct: 183 VENKGDGNGEVRFPWERPKVEEGSVRIKSRTSLAELTLPESELRRLRNLTMRTKNKTKIG 242
Query: 150 KAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVY 209
GVT++VV IR W+ +E+ +K + NM R EILE KTGGLVIW + +Y
Sbjct: 243 GGGVTQAVVDMIREKWKTSEIVKLKCEGAAALNMRRIHEILERKTGGLVIWRSGTSVSLY 302
Query: 210 RGDGSKSSVKMCPRSADDQEAPLSKSTHLHLEK-KVNVSWIKSNTATLDQNRSLKDGEEN 268
RG + V++ R E S + + ++ + N + N+++ +
Sbjct: 303 RGVSYEVPVQLNKRVYKKNETSHSSFSSITPNSFAISSNKTSGNAPAVGSNQNVH-ASQA 361
Query: 269 SLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPP 328
+L + +K+ + YE E D+LLDGLGPR+ DW PLP+D DLLP + G++PP
Sbjct: 362 TLNITDGENKDTESEVK-YEDEIDKLLDGLGPRYTDWPGCDPLPIDADLLPGKIHGYQPP 420
Query: 329 FRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITV 388
FR+ P RS L E T LR+LA LP HF LGR+R L+GLA A++KLWE+S +AK+ +
Sbjct: 421 FRILPYGVRSSLGLKEATALRRLARVLPPHFALGRSRQLEGLAMAMIKLWERSSIAKVAL 480
Query: 389 KWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKD 448
K G+ T +E+MA ++K LTGGVLL RNK ++ YRGK+
Sbjct: 481 KRGVQLTTSERMAEDIKK---------------------LTGGVLLSRNKDFLVFYRGKN 519
Query: 449 FLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPDEPL-EKTSKAGTLSEFQNIQS 507
FL V ++ERER + Q+ EE ARL+A T P + E+ AGTL E +
Sbjct: 520 FLSSDVTEALLERERLAKALQDEEEQARLRA-STLITPTVGITEQVGSAGTLGETLEADA 578
Query: 508 DFG------DLKMGNREFELQLEAE-IEDLERELRKQERKLLLEQDP------------- 547
+G D + ++ E+ A + LER L ERKL+ ++
Sbjct: 579 RWGKRLDDHDKQKMLKKAEVARHANLVRKLERRLALAERKLMKAENALSKVEEFLKPANR 638
Query: 548 --DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLF 605
D E IT+EER K+G+++ + LLLGRRGVF G +E +H HWKYRE+ ++I K K F
Sbjct: 639 PADPESITDEERFMFRKLGLRMKAFLLLGRRGVFSGTVENMHLHWKYRELVKIIVKAKTF 698
Query: 606 AQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSL 665
QV TA +L +ESGG+L+SVDK+ +G AI+++RGK+Y+RP L +NLL+KR+AL RS+
Sbjct: 699 DQVKKTALALESESGGVLVSVDKVSKGFAIVVFRGKDYQRPSTLRPKNLLTKRKALARSI 758
Query: 666 EMQRLGSL 673
E+QR +L
Sbjct: 759 ELQRREAL 766
>gi|2244807|emb|CAB10230.1| hypothetical protein [Arabidopsis thaliana]
gi|7268157|emb|CAB78493.1| hypothetical protein [Arabidopsis thaliana]
Length = 918
Score = 369 bits (948), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 261/709 (36%), Positives = 376/709 (53%), Gaps = 105/709 (14%)
Query: 49 AMKKIIENIEKLQKDQILDETQ---KKVMEKFEFKGCFEENVSHEEDLRGGF-------- 97
M+KI+E KL+K +DE Q K+V ++ + E + E+ RGGF
Sbjct: 110 TMEKIVE---KLKKYGFVDEDQFQDKEVEQERRIEKSSVEERFYVEERRGGFSEESPFGV 166
Query: 98 -GG----KVPWLREDRFVFRRM-------KKERMVTKAETMLDGELLERLKDEARKMRKW 145
GG K PW + + + KKE + AE L L RL++ + +
Sbjct: 167 YGGNDEVKFPWEKVSSMEKKELVNGEWTAKKESRYSLAEMTLSEFELNRLRNVMFRTKSK 226
Query: 146 VKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDA 205
++V AGVT++VV I+ W+ +E+ +K + NM R EILE KTGGLVIW +
Sbjct: 227 MRVTGAGVTQAVVDAIQEKWKGSEIVRLKIEGSSALNMRRMHEILERKTGGLVIWRSGTS 286
Query: 206 HVVY--RG----DGSKSSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQN 259
+Y +G DGS + K R A+ + L ST V+ S N L++
Sbjct: 287 IALYNYKGGSNRDGSGNMNKQVYRRAERLPSSLPTST-------VDQSVQLVNLPQLEKE 339
Query: 260 RSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLP 319
++ ++ + P + YE E + LL+GLGPR+ DW PLPVD DLLP
Sbjct: 340 PTVVGNKDRTSPQEV-----------EYEDEINELLEGLGPRYTDWQGGYPLPVDADLLP 388
Query: 320 EVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWE 379
+VPG++PPFR P RS L E T LR++A LP HF LGR+R LQGLATA++KLW+
Sbjct: 389 GIVPGYEPPFRALPYGVRSTLGTKEATSLRRIATVLPPHFALGRSRQLQGLATAMVKLWQ 448
Query: 380 KSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLM----QHLTGGVLLL 435
KSL+AK+ +K G+ T +E+MA ++K + F V ++ + LTGG+LL
Sbjct: 449 KSLIAKVALKRGVQLTTSERMAEDIKVIRFHSRVTFNCFYINVDIIRINDKRLTGGMLLS 508
Query: 436 RNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLP----DEPLE 491
RNK ++ YRGK FL V ++E+E ++ Q+ EE ARL+A +P ++ L
Sbjct: 509 RNKDFLVFYRGKSFLSLEVGEALMEKEMLVRTLQDEEEQARLRASSALVVPSIKANQQLA 568
Query: 492 KT------------------------SKAGTLSEFQNIQSDFG-DLKMGNREFELQLEAE 526
+T AGTL E + +G +L + E++ E E
Sbjct: 569 RTLQDKEEQARPSALVLPSTKANQNLVSAGTLGETLDATGKWGKNLDNDDHVEEMKQEVE 628
Query: 527 -------IEDLERELRKQERKLL---------------LEQDPDLEMITEEERQCLHKIG 564
+ LER+L E+KLL EQ DLE ITEEER K+G
Sbjct: 629 KVRSAKLVRKLERKLAFAEKKLLKAERALAKVEESLKPAEQRTDLEGITEEERFMFQKLG 688
Query: 565 MKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILI 624
+K+ + LLLGRRGVFDG +E +H HWKYRE+ +++ K K A +L AESGGIL+
Sbjct: 689 LKMKAFLLLGRRGVFDGTVENMHLHWKYRELIKILVKAKTLEGAQKVAMALEAESGGILV 748
Query: 625 SVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSL 673
SVDK+ +G+A+I+YRGK+Y+RP L +NLL+KR+AL RSLE+Q+ +L
Sbjct: 749 SVDKISKGYAVIVYRGKDYKRPTTLRPKNLLTKRKALARSLELQKREAL 797
>gi|115478793|ref|NP_001062990.1| Os09g0363100 [Oryza sativa Japonica Group]
gi|48716728|dbj|BAD23409.1| putative CRS1 [Oryza sativa Japonica Group]
gi|50726191|dbj|BAD33710.1| putative CRS1 [Oryza sativa Japonica Group]
gi|113631223|dbj|BAF24904.1| Os09g0363100 [Oryza sativa Japonica Group]
gi|125591023|gb|EAZ31373.1| hypothetical protein OsJ_15500 [Oryza sativa Japonica Group]
Length = 947
Score = 369 bits (946), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 235/605 (38%), Positives = 332/605 (54%), Gaps = 89/605 (14%)
Query: 101 VPWLREDRFVFRRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFE 160
+PW RE R +K AE + L RL+D A +M++ ++V GVT+ +V
Sbjct: 317 LPWEREGDV--DRPRKRSNTELAERTIPEHELRRLRDVALRMKERMRVGPGGVTQLIVES 374
Query: 161 IRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRG-DGSKSSVK 219
I WR E+ ++F+ P NM R +ILE +TGG+VIW + V+YRG + + V+
Sbjct: 375 IHQKWRVEEVVKLRFEGPPSLNMKRTHDILEERTGGIVIWRSGRSVVLYRGMNYNLRCVQ 434
Query: 220 MCPRSAD---DQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFM 276
++ + D+ + +H+E K KS L+++ + + E PT F
Sbjct: 435 SYTQTTEVNFDKRVSSNSVEPIHVEHKFQ----KSGADGLNRSAYIVNSSEK--PTETF- 487
Query: 277 DKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDA 336
+ D LD LGPR+ DW P+PVD DLLP VVPG+K PFRL P
Sbjct: 488 -------------DIDSFLDQLGPRYKDWSGRGPIPVDADLLPGVVPGYKTPFRLLPYMV 534
Query: 337 RSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTD 396
+S L + E+T LR+LA HF LGRNR QGLATAI+KLWEKS +AKI +K G+PNT
Sbjct: 535 KSTLRNKEMTALRRLARQTAPHFALGRNREHQGLATAIVKLWEKSSIAKIAIKRGVPNTC 594
Query: 397 NEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVEN 456
N++MA E++ LTGGVLL RNK I+ YRG DF+ V
Sbjct: 595 NDRMAEEIR---------------------KLTGGVLLSRNKEYIVFYRGNDFITPKVRQ 633
Query: 457 LIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGN 516
++VE++ + Q+ EE ARLKA + + + + AGTL+E + +S +GD
Sbjct: 634 VLVEKQEQAITWQDEEELARLKASASISVKPKVFKNPPVAGTLAETREAKSRWGD----- 688
Query: 517 REFELQLEAEIEDLERE----------LRKQERKLLL----------------------E 544
+ AE+ E+ LR +RKL+L E
Sbjct: 689 -----SINAELRKKEKNHMILTKHTSLLRNLKRKLILAKTKVIKAEKALAKVQEFLSPAE 743
Query: 545 QDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKL 604
DLE +T+EER L +IG+K+ + L+LGRR VFDG ++ +H HWK+RE+ +V+ K K
Sbjct: 744 LPTDLETVTDEERFLLRRIGLKMKAFLMLGRREVFDGTVQNMHLHWKHRELVKVLVKGKS 803
Query: 605 FAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRS 664
F QV + A SL AESGG+LISVDK +G+AII+YRGKNY+ P L +NLLS+R+AL RS
Sbjct: 804 FPQVKHIAISLEAESGGVLISVDKTTKGYAIILYRGKNYKTPQILKPRNLLSRRKALARS 863
Query: 665 LEMQR 669
+E+QR
Sbjct: 864 IELQR 868
>gi|357158137|ref|XP_003578028.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 962
Score = 369 bits (946), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 241/619 (38%), Positives = 341/619 (55%), Gaps = 68/619 (10%)
Query: 81 GCFEENVSHEEDLRGGFGGKV-PWLREDRFVFRRMKK-ERMVTK-AETMLDGELLERLKD 137
GC SHEED G + PW RED F +++ R T+ AE + L RL+D
Sbjct: 311 GC-----SHEEDFVQKLGSVLLPWEREDDDAFDGVRQGNRSNTELAEKTIPEPELRRLRD 365
Query: 138 EARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGL 197
A +M++ +++ GVT+++V I W +E+ ++F+ P NM R EILE +TGG
Sbjct: 366 AALRMKERMRIGPGGVTQAIVKSIHSKWSVDEVVKMRFEGPPSLNMKRTHEILEDRTGGT 425
Query: 198 VIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTHLHLEKKV-NVSWIKSNTATL 256
VIW + V+YRG + C +S +K + KKV +VS + +
Sbjct: 426 VIWRSGRSIVLYRG---MNYNLRCVQS-------YAKIAEVDSSKKVSDVSTVVPSCVEH 475
Query: 257 DQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGD 316
+ +S DG S TSI + + D LD LGPR+ DW P+PVD D
Sbjct: 476 NLQKSSADGVNRS--TSIVSSSQ----GATETFDIDSFLDQLGPRYKDWSGRSPIPVDAD 529
Query: 317 LLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILK 376
LLP VVP +KPPFR P + L D E+T LR+LA HF LGRNR QGLA+AI+K
Sbjct: 530 LLPGVVPDYKPPFRQLPYRTKLSLRDKEMTALRRLARQTAPHFALGRNREHQGLASAIVK 589
Query: 377 LWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLR 436
LWEKS + KI +K G+PNT N++MA E+K LTGGVL+ R
Sbjct: 590 LWEKSTIVKIAIKRGVPNTCNDRMAEEIK---------------------KLTGGVLISR 628
Query: 437 NKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKA 496
NK II YRG DF+ + ++VE++++ Q+ EE ARLKA + L L+ A
Sbjct: 629 NKEYIIFYRGNDFMTPKIRQVLVEQQQQAITQQDQEELARLKASASITLIPNALKNPQVA 688
Query: 497 GTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLERELRKQERKLLL------------- 543
GTL+E + +S +GDL R + + + L+ RKL+L
Sbjct: 689 GTLAETREAESRWGDLINDGRRKKERNHLILAKHTSLLKNMTRKLILAKTKVAKAEMALA 748
Query: 544 ---------EQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYRE 594
E DLE +T+EER +IG+K+ + L+LGRR VF G ++ +H HWK+RE
Sbjct: 749 KVQEFLSPAELPTDLETVTDEERFLFRRIGLKMKAFLMLGRREVFAGTVQNMHLHWKHRE 808
Query: 595 VARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNL 654
+ ++I K K FAQV + A SL AESGG+LIS+DK +G++II+YRGKNY+RP L +NL
Sbjct: 809 LVKIIVKGKSFAQVKHIAISLEAESGGVLISLDKTTKGYSIIVYRGKNYKRPQILKPRNL 868
Query: 655 LSKRQALRRSLEMQRLGSL 673
L++R+A+ RS+E+QR +L
Sbjct: 869 LTRRRAMARSIELQRREAL 887
>gi|357441009|ref|XP_003590782.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355479830|gb|AES61033.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 838
Score = 367 bits (943), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 247/680 (36%), Positives = 360/680 (52%), Gaps = 87/680 (12%)
Query: 46 GKQAMKKIIENIEKL--QKDQILDETQKKVMEKFEFKGCFEENVSHEEDLRGGF------ 97
G M +I+E ++K + D+ + ++ V+EK + F + RGGF
Sbjct: 107 GGSRMDRIVEKLKKFGYESDENENIKEEGVIEKGSMEDIFYVEEGMLPNTRGGFSPESPF 166
Query: 98 ---------GGKV--PWLR-------EDRFVFRRMKKERMVTKAETMLDGELLERLKDEA 139
GG+V PW + E+R R+ K M AE L L RL
Sbjct: 167 GIGSYGSGDGGEVRFPWEKPVVDEEVEERTSSRKKSKTSM---AELTLPESELRRLLKLT 223
Query: 140 RKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVI 199
+ ++ GVT++ V +I W+ +E+ +KF+ NM R EILE KTGGLVI
Sbjct: 224 FMKKHKTRIGGGGVTQAAVDKIHERWKTSEIVRLKFEGDAALNMKRMHEILEKKTGGLVI 283
Query: 200 WTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQN 259
W ++ +YRG K D +K + EK + S+ ++ +
Sbjct: 284 WRSGNSVSLYRGVSYK-----------DPSIQQNKQLYRKNEKSLKFLSAPSDDFEVEPS 332
Query: 260 RSLKDGEENS----LPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDG 315
D E + L ++ + + + K YE E D+LLDGLGPR+ DW +PLPVD
Sbjct: 333 EFTTDSETKTSLEKLESTNDQKEKVNLPKISYEDEVDKLLDGLGPRYTDWPGCEPLPVDA 392
Query: 316 DLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAIL 375
D+LP VPG++PPFR+ P R L E T LR++A LP HF LGRNR LQGLA A++
Sbjct: 393 DMLPPTVPGYQPPFRVLPFGVRPTLGFKEATSLRRIARGLPPHFALGRNRQLQGLAAAMI 452
Query: 376 KLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLL 435
KLWEKS +AK+ +K G+ T +E+MA E+K LTGG++L
Sbjct: 453 KLWEKSSIAKVALKRGVQLTTSERMAEEIK---------------------KLTGGIILS 491
Query: 436 RNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSK 495
RNK ++ YRGK+FL V ++ERE+ + Q+ EE ARL+A E +++
Sbjct: 492 RNKDFLVFYRGKNFLSPDVTQALLEREKMAKSMQDEEEQARLRASSLILPAINTSELSAE 551
Query: 496 AGTLSEFQNIQSDFGDL------KMGNREFEL--------QLEAEIEDLERELRKQERKL 541
AGTL E + + +G + RE E +LE ++ ER++R+ ER L
Sbjct: 552 AGTLGETLDADAKWGKTLDECHEQKVMREVEQLRHANIVRKLEEKLSLAERKIRRAERAL 611
Query: 542 L--------LEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYR 593
+ E D E IT+EER K+G+++ + LLLGRRGVFDG IE +H HWKYR
Sbjct: 612 MKVEVSLKPSETRADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMHLHWKYR 671
Query: 594 EVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQN 653
E+ ++I K F V A +L AESGG+L+SVDK+ +G++I++YRGK+Y+RP L +N
Sbjct: 672 ELVKIIVKANNFEHVKKIALALEAESGGVLVSVDKVSKGYSILVYRGKDYQRPSMLRPKN 731
Query: 654 LLSKRQALRRSLEMQRLGSL 673
LL+KR+AL RS+E+QR +L
Sbjct: 732 LLTKRKALARSIELQRHEAL 751
>gi|334186525|ref|NP_193187.3| CRM family member 3B [Arabidopsis thaliana]
gi|332658053|gb|AEE83453.1| CRM family member 3B [Arabidopsis thaliana]
Length = 907
Score = 367 bits (942), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 259/705 (36%), Positives = 370/705 (52%), Gaps = 122/705 (17%)
Query: 49 AMKKIIENIEKLQKDQILDETQ---KKVMEKFEFKGCFEENVSHEEDLRGGF-------- 97
M+KI+E KL+K +DE Q K+V ++ + E + E+ RGGF
Sbjct: 124 TMEKIVE---KLKKYGFVDEDQFQDKEVEQERRIEKSSVEERFYVEERRGGFSEESPFGV 180
Query: 98 -GG----KVPWLREDRFVFRRM-------KKERMVTKAETMLDGELLERLKDEARKMRKW 145
GG K PW + + + KKE + AE L L RL++ + +
Sbjct: 181 YGGNDEVKFPWEKVSSMEKKELVNGEWTAKKESRYSLAEMTLSEFELNRLRNVMFRTKSK 240
Query: 146 VKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDA 205
++V AGVT++VV I+ W+ +E+ +K + NM R EILE KTGGLVIW +
Sbjct: 241 MRVTGAGVTQAVVDAIQEKWKGSEIVRLKIEGSSALNMRRMHEILERKTGGLVIWRSGTS 300
Query: 206 HVVY--RG----DGSKSSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQN 259
+Y +G DGS + K R A+ + L ST V+ S N L++
Sbjct: 301 IALYNYKGGSNRDGSGNMNKQVYRRAERLPSSLPTST-------VDQSVQLVNLPQLEKE 353
Query: 260 RSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLP 319
++ ++ + P + YE E + LL+GLGPR+ DW PLPVD DLLP
Sbjct: 354 PTVVGNKDRTSPQEV-----------EYEDEINELLEGLGPRYTDWQGGYPLPVDADLLP 402
Query: 320 EVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWE 379
+VPG++PPFR P RS L E T LR++A LP HF LGR+R LQGLATA++KLW+
Sbjct: 403 GIVPGYEPPFRALPYGVRSTLGTKEATSLRRIATVLPPHFALGRSRQLQGLATAMVKLWQ 462
Query: 380 KSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKF 439
KSL+AK+ +K G+ T +E+MA ++K LTGG+LL RNK
Sbjct: 463 KSLIAKVALKRGVQLTTSERMAEDIK---------------------RLTGGMLLSRNKD 501
Query: 440 LIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLP----DEPLEKT-- 493
++ YRGK FL V ++E+E ++ Q+ EE ARL+A +P ++ L +T
Sbjct: 502 FLVFYRGKSFLSLEVGEALMEKEMLVRTLQDEEEQARLRASSALVVPSIKANQQLARTLQ 561
Query: 494 ----------------------SKAGTLSEFQNIQSDFG-DLKMGNREFELQLEAE---- 526
AGTL E + +G +L + E++ E E
Sbjct: 562 DKEEQARPSALVLPSTKANQNLVSAGTLGETLDATGKWGKNLDNDDHVEEMKQEVEKVRS 621
Query: 527 ---IEDLERELRKQERKLL---------------LEQDPDLEMITEEERQCLHKIGMKIN 568
+ LER+L E+KLL EQ DLE ITEEER K+G+K+
Sbjct: 622 AKLVRKLERKLAFAEKKLLKAERALAKVEESLKPAEQRTDLEGITEEERFMFQKLGLKMK 681
Query: 569 SNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDK 628
+ LLLGRRGVFDG +E +H HWKYRE+ +++ K K A +L AESGGIL+SVDK
Sbjct: 682 AFLLLGRRGVFDGTVENMHLHWKYRELIKILVKAKTLEGAQKVAMALEAESGGILVSVDK 741
Query: 629 LKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSL 673
+ +G+A+I+YRGK+Y+RP L +NLL+KR+AL RSLE+Q+ +L
Sbjct: 742 ISKGYAVIVYRGKDYKRPTTLRPKNLLTKRKALARSLELQKREAL 786
>gi|242044486|ref|XP_002460114.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
gi|241923491|gb|EER96635.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
Length = 962
Score = 365 bits (937), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 242/633 (38%), Positives = 352/633 (55%), Gaps = 65/633 (10%)
Query: 69 TQKKVMEKFEFKGCFEENVSHEEDLRGGFGGKV-PWLREDR----FVFRRMKKERMVTKA 123
T + ME+ + E +S+ ED G + PW RE+ F R+ + A
Sbjct: 292 TLRGSMEESDPNAAIE--LSNAEDFVQKLGPVLLPWEREEEDDEAFSGGRVGRRSNTELA 349
Query: 124 ETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNM 183
E + L RL+D A +M++ +KV GVT+ +V I W+ +E+ ++F+ P NM
Sbjct: 350 ERTIPEPELRRLRDTALRMKERIKVGPGGVTQDIVESIHRKWKVDEVVKMRFEGPPSLNM 409
Query: 184 DRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTHLHLEKK 243
R ++LE +TGG+VIW + V+YRG + C +S +KS K+
Sbjct: 410 KRTHDLLEDRTGGVVIWRSGRSVVLYRG---MNYNLQCVQS-------YAKSIETDSGKE 459
Query: 244 VNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFV 303
V+ + S+ + +L+D E + +N ++ S + D LD LGPR+
Sbjct: 460 VDDA---SSAVSSHGGHNLQDSREAGA-KRLTSTENFSLESS-ETFDIDNFLDQLGPRYR 514
Query: 304 DWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGR 363
DW P+PVD DLLP VV G+KPPFR+ P +S L D E+T LR+L+ HF LGR
Sbjct: 515 DWSGRGPVPVDADLLPGVVHGYKPPFRVLPYKIKSTLRDKEMTTLRRLSRQTAPHFALGR 574
Query: 364 NRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVL 423
NR QGLA A++KLWEKS +AKI +K G+PNT N++MA E+K
Sbjct: 575 NREHQGLAAAMVKLWEKSAIAKIAIKRGVPNTCNDRMAEEIK------------------ 616
Query: 424 LMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETF 483
LTGGVLL RNK I+ YRG DF+ V ++VE++ + Q+ EE ARLKA +
Sbjct: 617 ---KLTGGVLLSRNKEYIVFYRGNDFIAPKVRQVLVEKQEQAITQQDEEELARLKASASI 673
Query: 484 HLPDEPLEKTSKAGTLSEFQNIQSDFG-DLKMGNREFE------LQLEAEIEDLEREL-- 534
+ ++ AGTL+E +S +G L RE E L+ + +++L+R+L
Sbjct: 674 ITVPKGIKGPLVAGTLTETTEAKSRWGMSLNDKQREEEMKRLSLLKHTSLLKNLKRKLIL 733
Query: 535 -----RKQERKLLLEQD--------PDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDG 581
K ER L Q+ DLE +T+EER +IG+K+ + L+LGRR VFDG
Sbjct: 734 AKTKVAKAERALAKVQEFLSPAELPTDLETVTDEERFLFRRIGLKMRAFLMLGRREVFDG 793
Query: 582 VIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGK 641
++ +H HWK+RE+ ++I + K FAQV + A SL AES G+LIS+DK +G+AII YRGK
Sbjct: 794 TVQNMHLHWKHRELVKIIVRGKSFAQVKHIAISLEAESEGVLISLDKTSKGYAIIFYRGK 853
Query: 642 NYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLK 674
NYRRP + +NLL++RQAL RS+E+QR +LK
Sbjct: 854 NYRRPQIMKPRNLLTRRQALARSIELQRREALK 886
>gi|242071513|ref|XP_002451033.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
gi|241936876|gb|EES10021.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
Length = 895
Score = 365 bits (937), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 235/581 (40%), Positives = 319/581 (54%), Gaps = 70/581 (12%)
Query: 123 AETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRN 182
AE L L RL+ A +++ KV AGVT +V +I+ W+ E+ VK N
Sbjct: 170 AELTLPAAELRRLRHAAIRIKSRTKVGGAGVTREIVEKIKEKWKTEEVVRVKVSGTPALN 229
Query: 183 MDRAREILELKTGGLVIWTKKDAHVVYRG---------DGSKSSVKMCPRSADDQEAPLS 233
M EILE KTGGLVIW + +YRG GSK + + ++P+
Sbjct: 230 MRLFHEILERKTGGLVIWRSGTSVSLYRGVDYDEPETTKGSKKNSQSL-----SMKSPIK 284
Query: 234 KSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDR 293
S + L + ++ L N G+E + ++ + YE E D+
Sbjct: 285 GSPNPPLPPTEKANSVQDRNGPLVSNA----GKEEIV---------VQAPEIKYEDEIDK 331
Query: 294 LLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAH 353
LLD LGPR+ DW PLPVD DLLP VPG+KPPFR+ P R L+ + T LR+LA
Sbjct: 332 LLDELGPRYTDWPGSDPLPVDADLLPATVPGYKPPFRVLPYGVRPSLSRMDTTNLRRLAR 391
Query: 354 PLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKP 413
LP HF LGR+R LQGLA A++KLWEKS +AK+ +K G+ T +E+MA ++K
Sbjct: 392 GLPPHFALGRSRQLQGLANAMVKLWEKSSIAKVALKRGVQLTTSERMAEDIK-------- 443
Query: 414 NFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEE 473
LTGGV+L RN I+ YRGKDFL + +++ERER + Q+ EE
Sbjct: 444 -------------KLTGGVMLSRNNEFIVFYRGKDFLSSELAEVLLERERLAKSLQDEEE 490
Query: 474 GARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFG-------DLKMGN---------- 516
AR KA F E + + AGTL E S +G + KM
Sbjct: 491 -ARRKAASYFSSSAEKYVQPTVAGTLGETLEANSKYGTKLDENHEDKMARTVEAARHADL 549
Query: 517 -REFELQL---EAEIEDLERELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLL 572
R+ E +L + ++E ER L K E L +D E IT+EER K+G+++ + LL
Sbjct: 550 VRKLEWKLSLAQKKMEKAERVLGKVETALRPTEDSRPETITDEERFMFRKLGLRMKAFLL 609
Query: 573 LGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEG 632
LGRRGVFDG IE +H HWKYRE+ +++ K K FA V A SL AESGGIL+SVDK+ +G
Sbjct: 610 LGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKG 669
Query: 633 HAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSL 673
+AI+++RGKNYRRP L +NLLSKR+AL RS+E+QR +L
Sbjct: 670 YAIVVFRGKNYRRPSSLRPRNLLSKRKALARSIELQRHQAL 710
>gi|449440945|ref|XP_004138244.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
gi|449477054|ref|XP_004154915.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 560
Score = 362 bits (930), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 286/509 (56%), Gaps = 63/509 (12%)
Query: 183 MDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTHLHLEK 242
M A EI+E +TGGLV+W VVYRG + K+ P + D
Sbjct: 1 MKTAHEIVERRTGGLVLWRSGSVMVVYRGSNYEGPSKIKPLTRDGD-------------- 46
Query: 243 KVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRF 302
V + + S T + N + E+ +P M S E E ++LLDGLGPRF
Sbjct: 47 GVFIPDVSSATTSTSDNVAASVPEKTMMPIGPPMSNE---GLSEEEAEYNQLLDGLGPRF 103
Query: 303 VDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLG 362
V+WW LPVD D LP +PG+K PFRL P RS+LT+ E+T +RKLA LP HF LG
Sbjct: 104 VEWWGTGVLPVDADQLPPSIPGYKTPFRLLPTGMRSRLTNAEMTQMRKLAKSLPCHFALG 163
Query: 363 RNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGV 422
RNR QGLA AILKLWEKSLV KI VK GI NT+N+ MA E+
Sbjct: 164 RNRNHQGLAVAILKLWEKSLVVKIAVKRGIQNTNNKLMAEEIG----------------- 206
Query: 423 LLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIET 482
+LTGGVLLLRNK+ I++YRGKDFLP V + ER+ + Q+ EE R K +E
Sbjct: 207 ----NLTGGVLLLRNKYFIVIYRGKDFLPPSVAVALTERQELTKQIQDVEEKVRNKVVEA 262
Query: 483 FHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLERELRKQERKLL 542
L + + AGTL+EF QS +G ++ E+ R +R+ E KL
Sbjct: 263 TSL---SINGQAPAGTLAEFYEAQSRWGREITAEEREKMVEESSRAKTARLVRRIEHKLG 319
Query: 543 LEQ----------------------DPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFD 580
+ Q D D E IT+EER ++G+++ + L +G RGVFD
Sbjct: 320 VAQAKKLRAEKLLSKIEASMILSSPDDDQETITDEERVMFRRVGLRMTAYLPMGIRGVFD 379
Query: 581 GVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRG 640
GV+E +H HWK+RE+ ++I+KQK A V TA+ L ESGGIL+S+D++ +G+A++ YRG
Sbjct: 380 GVVENMHLHWKHRELVKLISKQKTLAFVEETARLLEYESGGILVSIDRVPKGYALVYYRG 439
Query: 641 KNYRRPLKLMTQNLLSKRQALRRSLEMQR 669
KNYRRP+ L +NLL+K +AL+RS+ MQR
Sbjct: 440 KNYRRPIALRPRNLLTKAKALKRSVAMQR 468
>gi|224091282|ref|XP_002309217.1| predicted protein [Populus trichocarpa]
gi|222855193|gb|EEE92740.1| predicted protein [Populus trichocarpa]
Length = 977
Score = 362 bits (928), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 236/603 (39%), Positives = 332/603 (55%), Gaps = 58/603 (9%)
Query: 98 GGKVPWLRE---DRFVFRRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVT 154
++PW R D + +K+ AE ML L+RL++ A +M + +KV G+T
Sbjct: 332 SNELPWKRTSGLDSLGEDKSRKKSNTDLAERMLPEHELKRLRNVALRMLERIKVGATGIT 391
Query: 155 ESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGS 214
+ +V I W+ +E+ +KF+ PL NM R EILE +TGGL+IW + V+YRG
Sbjct: 392 QDLVDAIHEKWKLDEVVKLKFEWPLSCNMKRTHEILESRTGGLIIWRSGSSVVMYRGTTY 451
Query: 215 KSSVKMCPRSADDQ-EAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTS 273
K C +S Q EA + + E+ N + S+ D R++ E+ +P +
Sbjct: 452 KF---QCVQSYTKQNEAGMD--VLQYAEEATNSA--TSSAGMKDLARTM----ESIIPDA 500
Query: 274 IFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSP 333
K+L ++ + E + LLD LGPR+ DW +PLPVD DLLP VVPG+K P RL P
Sbjct: 501 AKYLKDLSQEELMDFSELNHLLDELGPRYKDWCGREPLPVDADLLPAVVPGYKSPLRLLP 560
Query: 334 PDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIP 393
+ L++ T R+LA P HFVLGRNR LQGLA A++KLWE+S +AKI +K G+
Sbjct: 561 YGVKPCLSNKNTTNFRRLARTTPPHFVLGRNRELQGLANAMVKLWERSAIAKIAIKRGVQ 620
Query: 394 NTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCG 453
T NE MA ELK LTGG LL RNK I+ YRG DFLP
Sbjct: 621 YTRNEIMAEELK---------------------RLTGGTLLSRNKEYIVFYRGNDFLPPV 659
Query: 454 VENLIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFG--- 510
+ + ER + + Q+ E+ AR + + AGTL E S +G
Sbjct: 660 INETLKERRKLAFLYQDEEDQARQMTSAFIGSSVKTTKGPLVAGTLVETVAAISRWGNQP 719
Query: 511 ---DLKMGNREFEL--------QLEAEIEDLERELRKQERKLLLEQD--------PDLEM 551
D++ R+ L LE ++ + +L+K E+ L Q+ DLE
Sbjct: 720 SSEDVEEMIRDSALARHASLVKHLENKLAQAKGKLKKSEKDLAKVQENLEPTELPTDLET 779
Query: 552 ITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYT 611
I++EER KIG+ + L LGRRGVFDG IE +H HWKYRE+ ++I ++K AQV +
Sbjct: 780 ISDEERFLFRKIGLSMKPYLFLGRRGVFDGTIENMHLHWKYRELVKIIVERKGIAQVKHI 839
Query: 612 AKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLG 671
A SL AESGG+L+SVD+ +G+AII+YRGKNY RP + +NLL++RQAL RS+E+QR
Sbjct: 840 AISLEAESGGVLVSVDRTTKGYAIIVYRGKNYMRPQAMRPENLLTRRQALARSVELQRYE 899
Query: 672 SLK 674
+LK
Sbjct: 900 ALK 902
>gi|357156286|ref|XP_003577404.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 881
Score = 359 bits (922), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 230/582 (39%), Positives = 321/582 (55%), Gaps = 71/582 (12%)
Query: 123 AETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRN 182
AE L L RL+ +++ ++V AGVT +V +I+ W+ +E+ VK N
Sbjct: 166 AELTLPEAELRRLRHATMRIKSRIQVGGAGVTREIVAKIKEKWKTDEVVRVKVSGTPALN 225
Query: 183 MDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTH----- 237
M EILE KTGGLVIW + +YRG P + +K T+
Sbjct: 226 MRLFHEILERKTGGLVIWRSGTSVSLYRGVAYD-----VPET--------TKGTNRNWQA 272
Query: 238 LHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSL----YEREGDR 293
L ++ +N+ + S+ N G ++ + + + +N +++ YE E DR
Sbjct: 273 LGMKSSINIPPMPSSLPNEKVN-----GMQDRVGALVAVTENEETAETVPEIKYEEEIDR 327
Query: 294 LLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAH 353
LLD LGPR+ DW PLPVD DLLP VPG+KPPFR+ P R L+ + T LR+L
Sbjct: 328 LLDELGPRYSDWPGSNPLPVDADLLPATVPGYKPPFRVLPYGVRRSLSRKDTTNLRRLGR 387
Query: 354 PLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKP 413
LP HF LGR+R LQGLA A++KLWE+S +AKI +K G+ T +E+MA +LK
Sbjct: 388 GLPPHFALGRSRQLQGLAAAMVKLWERSSIAKIALKRGVQLTTSERMAEDLK-------- 439
Query: 414 NFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEE 473
LTGGV+L RN ++ YRGKDFL + +++ERER ++ Q+ EE
Sbjct: 440 -------------KLTGGVMLSRNNDFVVFYRGKDFLSSELAEVLLERERSMKSLQD-EE 485
Query: 474 GARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGN----------------- 516
ARL +F E + S AGTL E S +G+ N
Sbjct: 486 QARLDRTPSFASSTEAFIEPSVAGTLEETLEANSKYGNKVDENHMDKMTKTVEAAKHADV 545
Query: 517 -REFELQL---EAEIEDLERELRKQERKLLLEQDPDL-EMITEEERQCLHKIGMKINSNL 571
R+ E +L E I ER L K E L +D + E ITEEER K+G+++ + L
Sbjct: 546 VRKLEWKLSLAEKRIAKAERVLGKVETALKPSEDTNPHETITEEERFMFRKLGLRMKAFL 605
Query: 572 LLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKE 631
LLGRRGVFDG IE +H HWKYRE+ +++ K K F +V A SL ESGGIL+SVDK+ +
Sbjct: 606 LLGRRGVFDGTIENMHLHWKYRELVKILVKVKSFTEVKRIALSLEVESGGILVSVDKVSK 665
Query: 632 GHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSL 673
G+AI+++RGK+YRRP L +NLLSKR+AL RS+E+QR+ +L
Sbjct: 666 GYAIVVFRGKDYRRPSMLRPRNLLSKRKALARSIEIQRMQAL 707
>gi|414885161|tpg|DAA61175.1| TPA: hypothetical protein ZEAMMB73_652631 [Zea mays]
Length = 964
Score = 359 bits (922), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 242/641 (37%), Positives = 347/641 (54%), Gaps = 81/641 (12%)
Query: 69 TQKKVMEKFEFKGCFEENVSHEEDLRGGFG-GKVPWLREDR----FVFRRMKKERMVTKA 123
T + ME+ + E +S+ ED G +PW RE+ F R + A
Sbjct: 296 TLRNSMEESDPNATVE--LSNAEDFVQKLGPALLPWEREEEDDEAFSGGRAVRRSNTELA 353
Query: 124 ETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNM 183
E + L RL+D A +M++ +KV GVT+ +V I W+ +E+ ++F+ P NM
Sbjct: 354 ERSIPEPELRRLRDTALRMKERIKVGPGGVTQDIVESIHRKWKVDEVVKMRFEGPPSLNM 413
Query: 184 DRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTHLHLEKK 243
R ++LE +TGG+VIW + V+YRG C +S + + ++
Sbjct: 414 KRTHDLLEDRTGGVVIWRSGRSVVLYRGMNYNF---QCVQSY---------AKFIEIDSG 461
Query: 244 VNVSWIKSNTATLDQN-----RSLKDGEENSLPTSIFMDKNLRIDKSLYEREG---DRLL 295
VS +N+A L + S DG ++ T F SL E D L
Sbjct: 462 KGVS--DANSAVLSHDGHNLQASRADGMKSLTSTGNF---------SLESSETFDIDNFL 510
Query: 296 DGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPL 355
D LGPR+ DW P+PVD DLLP VV G+KPPFR+ P +S L D E+T LR+LA
Sbjct: 511 DQLGPRYKDWSGRGPIPVDADLLPGVVHGYKPPFRVLPYKIKSTLRDKEMTTLRRLARQT 570
Query: 356 PTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNF 415
HF LGRNR QGLA A++KLWEKS +AKI +K GIPNT N++MA E+K
Sbjct: 571 APHFALGRNREHQGLAAAMVKLWEKSAIAKIAIKRGIPNTCNDRMAEEIK---------- 620
Query: 416 KFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGA 475
LTGGVLL RNK I+ YRG DF+ V ++VE++ + Q+ EE A
Sbjct: 621 -----------KLTGGVLLSRNKEFIVFYRGNDFIAPKVRQVLVEKQEQAITQQDEEELA 669
Query: 476 RLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFG-DLKMGNREFE------LQLEAEIE 528
RLKA + + ++ AGTL+E +S +G + RE E L+ + ++
Sbjct: 670 RLKASASIITIPKDIKGPLVAGTLAETTEAKSRWGKSVNDKQREEEMKHLSLLKHTSLLK 729
Query: 529 DLEREL-------RKQERKLLLEQD--------PDLEMITEEERQCLHKIGMKINSNLLL 573
+L+R+L K E+ L Q+ DLE +T+EER +IG+K+ + L+L
Sbjct: 730 NLKRKLILAKTKVAKAEKALAKVQEFLTPAELPTDLETVTDEERFLFRRIGLKMRAFLML 789
Query: 574 GRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGH 633
GRR VFDG ++ +H HWK+RE+ +++ + K FAQ + A SL AES G+LIS+DK +G+
Sbjct: 790 GRREVFDGTVQNMHLHWKHRELVKIVVRGKSFAQAKHIAISLEAESEGVLISLDKTTKGY 849
Query: 634 AIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLK 674
II YRGKNYRRP + +NLL++RQAL RS+E+QR +LK
Sbjct: 850 VIIFYRGKNYRRPQIMKPRNLLTRRQALARSIELQRREALK 890
>gi|162459980|ref|NP_001106061.1| CRM family member 3 [Zea mays]
gi|156789080|gb|ABU96081.1| CRM family member 3 [Zea mays]
Length = 842
Score = 359 bits (921), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 237/579 (40%), Positives = 320/579 (55%), Gaps = 66/579 (11%)
Query: 123 AETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRN 182
AE L L RL+ A +++ KV AGVT +V +I+ W+ E+ VK N
Sbjct: 165 AELTLPAAELRRLRHAAIRIKSRTKVGGAGVTREIVEKIKEKWKTEEVVRVKVSGTPALN 224
Query: 183 MDRAREILELKTGGLVIWTKKDAHVVYRG------DGSKSSVKMCPRSADDQEAPLSKST 236
M EILE KTGGLVIW + +YRG + +K S K A D P+ S+
Sbjct: 225 MRLFHEILERKTGGLVIWRSGTSVSLYRGVDYDEPEPTKKSKKNSQSLAMD--FPIKGSS 282
Query: 237 HLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLD 296
N S + + TA S++D + + + ++ + YE E D+LLD
Sbjct: 283 --------NPSLLPTETAN-----SVRDSNVALVSNAAKEELVVQAPEIKYEDEIDKLLD 329
Query: 297 GLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLP 356
LGPR+ DW PLPVD DLLP +PG+KPPFR+ P R L+ + T LR+LA LP
Sbjct: 330 ELGPRYTDWPGSDPLPVDADLLPANMPGYKPPFRVLPYGVRPSLSRRDTTNLRRLARGLP 389
Query: 357 THFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFK 416
HF LGR+R LQGLA A++KLWEKS +AKI +K G+ T +E+MA ++K
Sbjct: 390 PHFALGRSRQLQGLANAMVKLWEKSSIAKIALKRGVQLTTSERMAEDIK----------- 438
Query: 417 FSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGAR 476
LTGGV+L RN I+ YRGKDFL + +++ERER + Q+ EE AR
Sbjct: 439 ----------KLTGGVMLSRNNEFIVFYRGKDFLSSELAEVLLERERLAKSLQDEEE-AR 487
Query: 477 LKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGN------------------RE 518
KA F E + + AGTL E S +G N R+
Sbjct: 488 RKAASYFS-SAETYAQPTVAGTLGETLEANSKYGTKHDENHADKMARTIEAARHADLVRK 546
Query: 519 FELQL---EAEIEDLERELRKQERKLLLEQDP-DLEMITEEERQCLHKIGMKINSNLLLG 574
E +L + ++E ER L K E L +D E IT+EER K+G+++ + LLLG
Sbjct: 547 LEWKLSLAQKKMEKAERVLGKVETALRPTEDSRPPETITDEERFMFRKLGLRMKAFLLLG 606
Query: 575 RRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHA 634
RRGVFDG IE +H HWKYRE+ +++ K K FA V A SL AESGGIL+SVDK+ +G+A
Sbjct: 607 RRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGYA 666
Query: 635 IIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSL 673
I+++RGKNYRRP L +NLLSKR+AL RS+E+QR +L
Sbjct: 667 IVVFRGKNYRRPSSLRPRNLLSKRKALARSIELQRHQAL 705
Score = 40.0 bits (92), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 16/154 (10%)
Query: 115 KKERMVTKAETML----DGELLERLKDEAR--------KMRKWVKVKKAGVTESVVFEIR 162
K ER++ K ET L D E + DE R +M+ ++ + + GV + + +
Sbjct: 560 KAERVLGKVETALRPTEDSRPPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMH 619
Query: 163 LAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIW----TKKDAHVVYRGDGSKSSV 218
L W+ EL + ++ R LE ++GG+++ +K A VV+RG +
Sbjct: 620 LHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGYAIVVFRGKNYRRPS 679
Query: 219 KMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSN 252
+ PR+ + L++S L + ++ + K N
Sbjct: 680 SLRPRNLLSKRKALARSIELQRHQALSRHFAKLN 713
>gi|414591664|tpg|DAA42235.1| TPA: CRM family member 3 [Zea mays]
Length = 1523
Score = 357 bits (917), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 237/579 (40%), Positives = 320/579 (55%), Gaps = 66/579 (11%)
Query: 123 AETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRN 182
AE L L RL+ A +++ KV AGVT +V +I+ W+ E+ VK N
Sbjct: 846 AELTLPAAELRRLRHAAIRIKSRTKVGGAGVTREIVEKIKEKWKTEEVVRVKVSGTPALN 905
Query: 183 MDRAREILELKTGGLVIWTKKDAHVVYRG------DGSKSSVKMCPRSADDQEAPLSKST 236
M EILE KTGGLVIW + +YRG + +K S K A D P+ S+
Sbjct: 906 MRLFHEILERKTGGLVIWRSGTSVSLYRGVDYDEPEPTKKSKKNSQSLAMD--FPIKGSS 963
Query: 237 HLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLD 296
N S + + TA S++D + + + ++ + YE E D+LLD
Sbjct: 964 --------NPSLLPTETAN-----SVRDSNVALVSNAAKEELVVQAPEIKYEDEIDKLLD 1010
Query: 297 GLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLP 356
LGPR+ DW PLPVD DLLP +PG+KPPFR+ P R L+ + T LR+LA LP
Sbjct: 1011 ELGPRYTDWPGSDPLPVDADLLPANMPGYKPPFRVLPYGVRPSLSRRDTTNLRRLARGLP 1070
Query: 357 THFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFK 416
HF LGR+R LQGLA A++KLWEKS +AKI +K G+ T +E+MA ++K
Sbjct: 1071 PHFALGRSRQLQGLANAMVKLWEKSSIAKIALKRGVQLTTSERMAEDIK----------- 1119
Query: 417 FSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGAR 476
LTGGV+L RN I+ YRGKDFL + +++ERER + Q+ EE AR
Sbjct: 1120 ----------KLTGGVMLSRNNEFIVFYRGKDFLSSELAEVLLERERLAKSLQDEEE-AR 1168
Query: 477 LKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNR------------------- 517
KA F E + + AGTL E S +G N
Sbjct: 1169 RKAASYFS-SAETYAQPTVAGTLGETLEANSKYGTKHDENHADKMARTIEAARHADLVRK 1227
Query: 518 -EFELQL-EAEIEDLERELRKQERKLLLEQDP-DLEMITEEERQCLHKIGMKINSNLLLG 574
E++L L + ++E ER L K E L +D E IT+EER K+G+++ + LLLG
Sbjct: 1228 LEWKLSLAQKKMEKAERVLGKVETALRPTEDSRPPETITDEERFMFRKLGLRMKAFLLLG 1287
Query: 575 RRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHA 634
RRGVFDG IE +H HWKYRE+ +++ K K FA V A SL AESGGIL+SVDK+ +G+A
Sbjct: 1288 RRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGYA 1347
Query: 635 IIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSL 673
I+++RGKNYRRP L +NLLSKR+AL RS+E+QR +L
Sbjct: 1348 IVVFRGKNYRRPSSLRPRNLLSKRKALARSIELQRHQAL 1386
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 16/154 (10%)
Query: 115 KKERMVTKAETML----DGELLERLKDEAR--------KMRKWVKVKKAGVTESVVFEIR 162
K ER++ K ET L D E + DE R +M+ ++ + + GV + + +
Sbjct: 1241 KAERVLGKVETALRPTEDSRPPETITDEERFMFRKLGLRMKAFLLLGRRGVFDGTIENMH 1300
Query: 163 LAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIW----TKKDAHVVYRGDGSKSSV 218
L W+ EL + ++ R LE ++GG+++ +K A VV+RG +
Sbjct: 1301 LHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGYAIVVFRGKNYRRPS 1360
Query: 219 KMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSN 252
+ PR+ + L++S L + ++ + K N
Sbjct: 1361 SLRPRNLLSKRKALARSIELQRHQALSRHFAKLN 1394
>gi|326492672|dbj|BAJ90192.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 356 bits (914), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 228/576 (39%), Positives = 321/576 (55%), Gaps = 59/576 (10%)
Query: 123 AETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRN 182
AE L L RL+ A +++ +V AGVT +V +I+ WR +E+ VK + N
Sbjct: 181 AELTLPEPELRRLRHAAMRIKSKTQVGGAGVTREIVAKIKEKWRTDEVVRVKVNGTPALN 240
Query: 183 MDRAREILELKTGGLVIWTKKDAHVVYRGDGSK--SSVKMCPRSADDQEAPLSKSTHLHL 240
M EILE KTGGLVIW + +YRG + K R+ D + +
Sbjct: 241 MRLFHEILERKTGGLVIWRSGTSVSLYRGVAYDVPDTTKGTNRTWQD----------VGM 290
Query: 241 EKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSL-YEREGDRLLDGLG 299
+ + I S+ N S++ G L ++ ++ + + YE E RLLD LG
Sbjct: 291 KSSIKGPPIPSSIPNEKVN-SMQ-GSNGGLVSNTEKEEAIETVPEIKYEEEIGRLLDELG 348
Query: 300 PRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHF 359
PR+ DW PLPVD DLLP +PG+KPPFR+ P R L+ + T LR+LA LP HF
Sbjct: 349 PRYSDWPGSNPLPVDADLLPATIPGYKPPFRVLPYGVRRSLSRKDTTNLRRLARGLPPHF 408
Query: 360 VLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSD 419
LGR+R LQGLA A++KLWE+S +AK+ +K G+ T +E+MA ++K
Sbjct: 409 ALGRSRQLQGLAAAMVKLWERSSIAKVALKRGVQLTTSERMAEDIK-------------- 454
Query: 420 DGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKA 479
LTGGV+L RN ++ YRGKDFL + ++ERER ++ Q+ EE ARL A
Sbjct: 455 -------KLTGGVMLSRNNDFVVFYRGKDFLSTELAEALLERERSMKSLQD-EEQARLNA 506
Query: 480 IETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGN------------------REFEL 521
+F E +++ AGTL E S +G+ + N R+ E
Sbjct: 507 KLSFTSSTEAFIESTVAGTLGETLEANSKYGNELVDNHVDKMTRTVEAAKHADLVRKLEW 566
Query: 522 QL---EAEIEDLERELRKQERKLLLEQDPDL-EMITEEERQCLHKIGMKINSNLLLGRRG 577
+L E I ER L K E L +D E IT+EER K+G+++ + LLLGRRG
Sbjct: 567 KLALAEKRIAKAERVLGKVETALKPTEDTKPPETITDEERFMFRKLGLRMKAFLLLGRRG 626
Query: 578 VFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIII 637
VFDG IE +H HWKYRE+ +++ K K FA V TA SL ESGG+L+SVDK+ +G+AI++
Sbjct: 627 VFDGTIENMHLHWKYRELVKILVKAKSFADVKRTALSLEVESGGVLVSVDKVSKGYAIVV 686
Query: 638 YRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSL 673
+RGK+Y+RP L +NLLSKR+AL RS+E+QR+ +L
Sbjct: 687 FRGKDYKRPSMLRPRNLLSKRKALARSIELQRMEAL 722
>gi|30686898|ref|NP_188947.2| CRM family member 3A [Arabidopsis thaliana]
gi|332643191|gb|AEE76712.1| CRM family member 3A [Arabidopsis thaliana]
Length = 881
Score = 356 bits (914), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 249/674 (36%), Positives = 358/674 (53%), Gaps = 89/674 (13%)
Query: 49 AMKKIIENIEKLQKDQILDETQKKVMEKFEF--KGCFEENVSHEE----DLRGGF----- 97
M+KI+E KL+K ++E Q K +E+ KG E+ EE + RGGF
Sbjct: 118 TMEKIVE---KLKKYGYMEEVQNKEIEQERRIEKGSVEDIFYVEEGKLPNTRGGFTEESL 174
Query: 98 -GGK----------VPWLREDRFVFRRM------KKERMVTKAETMLDGELLERLKDEAR 140
GG+ PW + + + KKE + AE L L RL++
Sbjct: 175 LGGENVIGSNGDVGFPWEKMSAKEKKELEAEWTAKKENRYSLAEMTLPESELRRLRNLTF 234
Query: 141 KMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIW 200
+ ++++ GVT+ V I+ W+ E+ +K + NM + EILE KTGGLVIW
Sbjct: 235 RTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIW 294
Query: 201 TKKDAHVVYRGDGSK-SSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQN 259
+ +YRG + S K + ++ H V+ S K + L+Q
Sbjct: 295 RSGTSISLYRGVSYELPSGKWNKQRREETPPEAVIENHDETTTMVDKSDEKVHLPQLEQE 354
Query: 260 RSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLP 319
+ + ++ + P + D+ + L GPRF+DW PLPVD DLLP
Sbjct: 355 TTSVEKKDQTSPVVEYEDELDELLDDL------------GPRFMDWPGDNPLPVDADLLP 402
Query: 320 EVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWE 379
+P ++PPFR+ P RS L E T LR+LA +P HF LGR+R LQGLATA+++LWE
Sbjct: 403 GAIPDYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWE 462
Query: 380 KSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKF 439
KS++AKI +K G+ +T +E+MA +LK LTGG++L RNK
Sbjct: 463 KSMLAKIAIKRGVQSTTSERMAEDLK---------------------KLTGGIMLSRNKD 501
Query: 440 LIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPD-EPLEKTSKAGT 498
++ YRGK+FL V + +VE+ER ++ Q+ EE ARL+ +P EP K AGT
Sbjct: 502 FLVFYRGKNFLSREVADALVEQERFVRTLQDEEEQARLRGSSALIVPSTEPANKLVSAGT 561
Query: 499 LSEFQNIQSDFG-DLKMGNREFELQLEAEI-------EDLERELRKQERKLL-------- 542
L E + +G +L + E++ E EI LER+L ERKLL
Sbjct: 562 LGETLDATGKWGKNLDDDDHSDEVKQEVEILRHENLVRKLERKLAFAERKLLKAERGLAK 621
Query: 543 -------LEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREV 595
EQ D E IT+EER K+G+K+ + LLLGRRGVFDG +E +H HWKYRE+
Sbjct: 622 VEVCLKPAEQREDPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYREL 681
Query: 596 ARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLL 655
++I K K F V A +L AESGGIL+S+DK+ +G+AII+YRG++Y+RP L +NLL
Sbjct: 682 VKIIVKAKTFDGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLL 741
Query: 656 SKRQALRRSLEMQR 669
+KR+AL RS+E+QR
Sbjct: 742 TKRKALARSIELQR 755
>gi|9294196|dbj|BAB02098.1| unnamed protein product [Arabidopsis thaliana]
Length = 850
Score = 356 bits (913), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 249/674 (36%), Positives = 358/674 (53%), Gaps = 89/674 (13%)
Query: 49 AMKKIIENIEKLQKDQILDETQKKVMEKFEF--KGCFEENVSHEE----DLRGGF----- 97
M+KI+E KL+K ++E Q K +E+ KG E+ EE + RGGF
Sbjct: 87 TMEKIVE---KLKKYGYMEEVQNKEIEQERRIEKGSVEDIFYVEEGKLPNTRGGFTEESL 143
Query: 98 -GGK----------VPWLREDRFVFRRM------KKERMVTKAETMLDGELLERLKDEAR 140
GG+ PW + + + KKE + AE L L RL++
Sbjct: 144 LGGENVIGSNGDVGFPWEKMSAKEKKELEAEWTAKKENRYSLAEMTLPESELRRLRNLTF 203
Query: 141 KMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIW 200
+ ++++ GVT+ V I+ W+ E+ +K + NM + EILE KTGGLVIW
Sbjct: 204 RTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIW 263
Query: 201 TKKDAHVVYRGDGSK-SSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQN 259
+ +YRG + S K + ++ H V+ S K + L+Q
Sbjct: 264 RSGTSISLYRGVSYELPSGKWNKQRREETPPEAVIENHDETTTMVDKSDEKVHLPQLEQE 323
Query: 260 RSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLP 319
+ + ++ + P + D+ + L GPRF+DW PLPVD DLLP
Sbjct: 324 TTSVEKKDQTSPVVEYEDELDELLDDL------------GPRFMDWPGDNPLPVDADLLP 371
Query: 320 EVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWE 379
+P ++PPFR+ P RS L E T LR+LA +P HF LGR+R LQGLATA+++LWE
Sbjct: 372 GAIPDYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWE 431
Query: 380 KSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKF 439
KS++AKI +K G+ +T +E+MA +LK LTGG++L RNK
Sbjct: 432 KSMLAKIAIKRGVQSTTSERMAEDLK---------------------KLTGGIMLSRNKD 470
Query: 440 LIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPD-EPLEKTSKAGT 498
++ YRGK+FL V + +VE+ER ++ Q+ EE ARL+ +P EP K AGT
Sbjct: 471 FLVFYRGKNFLSREVADALVEQERFVRTLQDEEEQARLRGSSALIVPSTEPANKLVSAGT 530
Query: 499 LSEFQNIQSDFG-DLKMGNREFELQLEAEI-------EDLERELRKQERKLL-------- 542
L E + +G +L + E++ E EI LER+L ERKLL
Sbjct: 531 LGETLDATGKWGKNLDDDDHSDEVKQEVEILRHENLVRKLERKLAFAERKLLKAERGLAK 590
Query: 543 -------LEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREV 595
EQ D E IT+EER K+G+K+ + LLLGRRGVFDG +E +H HWKYRE+
Sbjct: 591 VEVCLKPAEQREDPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYREL 650
Query: 596 ARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLL 655
++I K K F V A +L AESGGIL+S+DK+ +G+AII+YRG++Y+RP L +NLL
Sbjct: 651 VKIIVKAKTFDGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLL 710
Query: 656 SKRQALRRSLEMQR 669
+KR+AL RS+E+QR
Sbjct: 711 TKRKALARSIELQR 724
>gi|302805129|ref|XP_002984316.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
gi|300148165|gb|EFJ14826.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
Length = 692
Score = 355 bits (910), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 249/653 (38%), Positives = 348/653 (53%), Gaps = 70/653 (10%)
Query: 50 MKKIIENIEKLQKDQILDETQKKVMEKFEFKGCFEENVSHEEDLRGGFGGKVPWLREDR- 108
M I+E + +++ Q T V+ F E+ S E G PW RE
Sbjct: 1 MLNIVEKLRAIERKQRSYSTH--VVPPDTTAAPFSESSSLEGRDSTSQQGSFPWQRESSS 58
Query: 109 ---FVFRRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAW 165
R + ++ AE + L RL+ A ++ +KV GVT++VV +I W
Sbjct: 59 EAPTPVTRPQPPKLPCLAELTIPELELRRLQRIAIRVVNPIKVGYLGVTKAVVQDIHRRW 118
Query: 166 RRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSA 225
++ E+ ++ D P NM + + LE KTGGLV+W ++YRG G R
Sbjct: 119 QKCEVVKIQCDGPAAINMKQTHDELETKTGGLVVWRTGGMAILYRGKG------YFARVD 172
Query: 226 DDQEAPLSKSTHLHLEKKVNV-SWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDK 284
+ A L K + +K+N+ IK D++ S + E + ++ +D
Sbjct: 173 NSMVANLKK----YQRRKINLMEAIKIRDEDEDRDYSQSEHGEARRDSEKGNIEDEYLD- 227
Query: 285 SLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDE 344
E D LL+ LGPR+ DW KP+PVDGDLLP VPG+KPP R+ P A+ L++ E
Sbjct: 228 -----EIDALLEELGPRYDDWIGRKPVPVDGDLLPASVPGYKPPLRMLPYRAKKNLSNME 282
Query: 345 LTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANEL 404
LT LR+L PLP HFVLGRNRGLQGLA+AILKLW+KS + KI +K G+ NT N+ MA EL
Sbjct: 283 LTVLRRLVKPLPPHFVLGRNRGLQGLASAILKLWQKSELVKIGLKRGVQNTRNQLMAEEL 342
Query: 405 KASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERE 464
+ LTGGVLL R+KF I LYRGKDFLP V ++ ERE
Sbjct: 343 ---------------------ERLTGGVLLSRDKFFITLYRGKDFLPTSVAAVLRERESN 381
Query: 465 LQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNI------QSDFGDLKMG--- 515
++ E+ R+ A + D T +G+LSE + Q D +M
Sbjct: 382 MRELLLKEDQVRIPA----QIGDGQNRTTPVSGSLSESMEMRRQWEAQRSEKDDEMDRNA 437
Query: 516 ---------NREFELQLEAEIEDLER---ELRKQERKLLLEQDP-DLEMITEEERQCLHK 562
+ E +L A I R ++ K ER LLL + P D E ITEEER K
Sbjct: 438 AVVALKVREQKRLEAKLAAAISKKRRADLQIVKLERSLLLSEHPRDRETITEEERYMFKK 497
Query: 563 IGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGI 622
+G+++++ LL+GRRGVFDGVIE +H HWK+RE+ ++I K+K A + AK L ESGGI
Sbjct: 498 LGLRMDAFLLIGRRGVFDGVIENMHLHWKHRELVKLILKEKDKAIALEVAKMLEIESGGI 557
Query: 623 LISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKF 675
L+ V +G AII+YRGKNY+RP +L ++LL+KR+AL RS E+QR +L+
Sbjct: 558 LVGVVTTSKGQAIIVYRGKNYQRPAELRPRSLLTKRKALARSKEIQRKKALQL 610
Score = 38.9 bits (89), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 22/119 (18%)
Query: 141 KMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRA-----REILELKTG 195
+M ++ + + GV + V+ + L W+ EL + + + D+A ++LE+++G
Sbjct: 501 RMDAFLLIGRRGVFDGVIENMHLHWKHRELVKL-----ILKEKDKAIALEVAKMLEIESG 555
Query: 196 GL----VIWTKKDAHVVYRGDGSKSSVKMCPRS--------ADDQEAPLSKSTHLHLEK 242
G+ V +K A +VYRG + ++ PRS A +E K+ LH+EK
Sbjct: 556 GILVGVVTTSKGQAIIVYRGKNYQRPAELRPRSLLTKRKALARSKEIQRKKALQLHIEK 614
>gi|356573408|ref|XP_003554853.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 1027
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 220/593 (37%), Positives = 328/593 (55%), Gaps = 69/593 (11%)
Query: 112 RRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELA 171
R +++++ T AE L + RL MR+ ++V KAG+TE +V I WR E+
Sbjct: 115 RERREDKVPTLAELSLSDAEIRRLTTAGLAMRQKLRVGKAGLTEGIVNGIHERWRSFEVV 174
Query: 172 MVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAP 231
+ + NM R ++LE KTGGLV+W ++YRG K + + + D
Sbjct: 175 RIVCEDLSRFNMKRTHDLLERKTGGLVVWRSGSKIILYRGTDYKYPYFLSDKVSRDDN-- 232
Query: 232 LSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTS-------IFMDKNLRID- 283
+ H+++ ++ K + + ++N G+ +++ T+ + +R
Sbjct: 233 -TGDAMQHMDEDAK-NFDKRESHSSEKNSVTYAGKSSNVKTAKPALIQGVGSPNKVRFQL 290
Query: 284 --KSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLT 341
++ ++ D LL G+GPRF+DWW + PLPVD DLLP V+PG++ PFRL P + KLT
Sbjct: 291 PGEAELAKDADSLLTGIGPRFIDWWGYDPLPVDADLLPAVIPGYRKPFRLLPYGVKPKLT 350
Query: 342 DDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMA 401
DDE+T +R+L LP HF LGRN+ L GLA AI+KLWE+ + KI +K G+ NT+ E MA
Sbjct: 351 DDEMTTMRRLGKHLPCHFALGRNKKLHGLAAAIIKLWERCEIVKIAIKRGVLNTNGELMA 410
Query: 402 NELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVER 461
E+K +LTGG L+ R+K I+ YRGKDFLP V + I E+
Sbjct: 411 EEIK---------------------YLTGGTLIARDKEFIVFYRGKDFLPTAVSSAI-EQ 448
Query: 462 ERELQICQNHEEGARLKAIETFHLPDEP-----------------LEKTSKAGTLSEFQ- 503
R + + +LK + + D+P +K +K G L+E +
Sbjct: 449 RRSIGMY-------KLKTRNSLSVTDDPDLKDGTIECDSEVKGMNFKKDTKQGMLTEAEA 501
Query: 504 NIQSDFGDLKMGNREFELQLEAEIEDLERELRKQERKLLLEQDPDLEMITEEERQCLHKI 563
I+S L M L+ +A+ E L EL E E++ + E ITEEE+ L +I
Sbjct: 502 AIKSTSIKLSMA-----LEEKAKAEKLLSELENAESP--QEEEINKEGITEEEKYMLRRI 554
Query: 564 GMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVI-TKQKLFAQVIYTAKSLVAESGGI 622
G+K++ LLLGRRGVFDG +E +H HWKYRE+ ++I KQ V A++L AESGGI
Sbjct: 555 GLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNKQMSLEDVQQIAQTLEAESGGI 614
Query: 623 LISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKF 675
LI+V+++ + +AII+YRGKNY RP L + LL+K+QAL+RS+E QR SLK
Sbjct: 615 LIAVERVNKSYAIIVYRGKNYSRPASLRPRTLLNKKQALKRSIEAQRCESLKL 667
>gi|77551737|gb|ABA94534.1| CRS1/YhbY domain containing protein, expressed [Oryza sativa
Japonica Group]
Length = 886
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 238/584 (40%), Positives = 319/584 (54%), Gaps = 75/584 (12%)
Query: 123 AETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRN 182
AE L L RL+ +++ +KV AGVT +V IR WR +E+ +K N
Sbjct: 172 AELTLPEAELRRLRHAGMRLKSRIKVGGAGVTREIVERIRDRWRNDEVVRIKVTGTPALN 231
Query: 183 MDRAREILELKTGGLVIWTKKDAHVVYRG---------DGSKSSVKMCPRSADDQEAPLS 233
M EILE KTGGLVIW + +YRG G+ + + + +E P
Sbjct: 232 MRLFHEILERKTGGLVIWRSGTSVSLYRGVAYDIPEPTKGTSKNTQTLGMKSSIKEPP-- 289
Query: 234 KSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDR 293
L +KVN ++ N L N E+++L + K YE E D+
Sbjct: 290 -GHSLLPNEKVNE--MQDNNGALVSN-----AEKDTLVEPVPEIK--------YEDEIDK 333
Query: 294 LLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAH 353
LLD LGPR+ DW P PVD DLLP VPG+KPPFR+ P R L+ + T LR+LA
Sbjct: 334 LLDELGPRYDDWPRPDPSPVDADLLPATVPGYKPPFRVLPYGVRPSLSRRDTTNLRRLAR 393
Query: 354 PLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKP 413
LP HF LGR+R LQGLA A++KLWEKS +AKI +K G+ T +E+MA ++K
Sbjct: 394 GLPPHFALGRSRQLQGLAAAMVKLWEKSSIAKIALKRGVQLTTSERMAEDIK-------- 445
Query: 414 NFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEE 473
LTGGV+L RN ++ YRGKDFL + ++ERER + Q+ EE
Sbjct: 446 -------------KLTGGVMLSRNNDFMVFYRGKDFLSPELAEKLLERERWAKSLQD-EE 491
Query: 474 GARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFG---DLKMGNR------------- 517
ARL A +F E + + AGTL E S +G D N+
Sbjct: 492 QARLNAASSFSSRTEAPVEPTVAGTLGETLEANSKYGNKLDENYENKMTRTVEAARHADL 551
Query: 518 ----EFELQL-EAEIEDLERELRKQERKLLLE---QDPDLEMITEEERQCLHKIGMKINS 569
E++LQL + +IE ER L K E L Q P E IT+EER K+G+++ +
Sbjct: 552 VRKLEWKLQLAQKKIEKAERVLGKVETALKPTEGIQPP--ETITDEERFMFRKLGLRMKA 609
Query: 570 NLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKL 629
LLLGRRGVFDG IE +H HWKYRE+ +++ K K F V A SL AESGGIL+SVDK+
Sbjct: 610 FLLLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKV 669
Query: 630 KEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSL 673
+G+AI+++RGK+Y RP KL +NLLSKR+AL RS+E+QR +L
Sbjct: 670 SKGYAIVVFRGKDYARPSKLRPRNLLSKRKALARSIEIQRREAL 713
>gi|222616258|gb|EEE52390.1| hypothetical protein OsJ_34482 [Oryza sativa Japonica Group]
Length = 560
Score = 352 bits (903), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 236/578 (40%), Positives = 316/578 (54%), Gaps = 71/578 (12%)
Query: 123 AETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRN 182
AE L L RL+ +++ +KV AGVT +V IR WR +E+ +K N
Sbjct: 18 AELTLPEAELRRLRHAGMRLKSRIKVGGAGVTREIVERIRDRWRNDEVVRIKVTGTPALN 77
Query: 183 MDRAREILELKTGGLVIWTKKDAHVVYRG---------DGSKSSVKMCPRSADDQEAPLS 233
M EILE KTGGLVIW + +YRG G+ + + + +E P
Sbjct: 78 MRLFHEILERKTGGLVIWRSGTSVSLYRGVAYDIPEPTKGTSKNTQTLGMKSSIKEPP-- 135
Query: 234 KSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDR 293
L +KVN ++ N L N E+++L + K YE E D+
Sbjct: 136 -GHSLLPNEKVNE--MQDNNGALVSN-----AEKDTLVEPVPEIK--------YEDEIDK 179
Query: 294 LLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAH 353
LLD LGPR+ DW P PVD DLLP VPG+KPPFR+ P R L+ + T LR+LA
Sbjct: 180 LLDELGPRYDDWPRPDPSPVDADLLPATVPGYKPPFRVLPYGVRPSLSRRDTTNLRRLAR 239
Query: 354 PLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKP 413
LP HF LGR+R LQGLA A++KLWEKS +AKI +K G+ T +E+MA ++K
Sbjct: 240 GLPPHFALGRSRQLQGLAAAMVKLWEKSSIAKIALKRGVQLTTSERMAEDIK-------- 291
Query: 414 NFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEE 473
LTGGV+L RN ++ YRGKDFL + ++ERER + Q+ EE
Sbjct: 292 -------------KLTGGVMLSRNNDFMVFYRGKDFLSPELAEKLLERERWAKSLQD-EE 337
Query: 474 GARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFG---DLKMGNR------------- 517
ARL A +F E + + AGTL E S +G D N+
Sbjct: 338 QARLNAASSFSSRTEAPVEPTVAGTLGETLEANSKYGNKLDENYENKMTRTVEAARHADL 397
Query: 518 ----EFELQL-EAEIEDLERELRKQERKL-LLEQDPDLEMITEEERQCLHKIGMKINSNL 571
E++LQL + +IE ER L K E L E E IT+EER K+G+++ + L
Sbjct: 398 VRKLEWKLQLAQKKIEKAERVLGKVETALKPTEGIQPPETITDEERFMFRKLGLRMKAFL 457
Query: 572 LLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKE 631
LLGRRGVFDG IE +H HWKYRE+ +++ K K F V A SL AESGGIL+SVDK+ +
Sbjct: 458 LLGRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSK 517
Query: 632 GHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQR 669
G+AI+++RGK+Y RP KL +NLLSKR+AL RS+E+QR
Sbjct: 518 GYAIVVFRGKDYARPSKLRPRNLLSKRKALARSIEIQR 555
>gi|168038664|ref|XP_001771820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676951|gb|EDQ63428.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1106
Score = 351 bits (901), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 234/617 (37%), Positives = 332/617 (53%), Gaps = 70/617 (11%)
Query: 97 FGGKVPWL------REDRFVFRRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKK 150
G + PW +ED + K+ R + AE L L RL+ +++ +K+ +
Sbjct: 289 LGSRFPWAMGENEEQEDHEQIEKKKRVRSPSVAELTLPEPELRRLRTLGLQLQGRLKIGR 348
Query: 151 AGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYR 210
GVT +V I WR +ELA VK D PL NM +A E LE TGGLVIW A VVYR
Sbjct: 349 LGVTPGIVEAIHDRWRTSELAKVKCDAPLSMNMKKAHEDLERLTGGLVIWRAGSAAVVYR 408
Query: 211 GDG----------SKSSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNR 260
G K + + ++QE + + + +E + + + + ++
Sbjct: 409 GKDYVHPFVLEREEKELLSLDLDEDEEQELLMEAGSEVEMESSIEECFDVTGDQSGEKEF 468
Query: 261 SLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPE 320
+K G+ L + M++ LLDGLGPR+ DW P+PVDGDLL +
Sbjct: 469 LMKQGQNADL---MMMEE---------------LLDGLGPRYADWKGKDPVPVDGDLLLD 510
Query: 321 VVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEK 380
FK PFRL P + KL D E+T LR+LA P+P HFVLGRNRGL GLA AI+KLWEK
Sbjct: 511 SEFKFKRPFRLLPHGVKPKLNDFEMTQLRRLARPVPPHFVLGRNRGLDGLAAAIMKLWEK 570
Query: 381 SLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFL 440
S + KI VK G+ NT NE+MA ELKA + P+ + + LTGG LL R+K
Sbjct: 571 SEIVKIGVKKGVQNTSNEKMAEELKARITSKFPSSRIT-------VRLTGGTLLARDKEY 623
Query: 441 IILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIE-TFHLPDEPLEKTSKAGTL 499
I+L RGKDFLP V + ER+R + Q EE RL + + D TSK GTL
Sbjct: 624 IVLSRGKDFLPSAVRVALEERDRMAKAVQEEEERIRLSGRKRVVQIVD-----TSKVGTL 678
Query: 500 SEFQNIQSDFGDLKMGNREFELQLEAEI-----------EDLERELRKQER------KLL 542
E ++ + + + + ++ A + ++ L+K+ER K+
Sbjct: 679 EEAMETRAAWEGWQKSDEARKERIAARKAKRGQAMDRIRQKMKLALQKKERAMAELAKID 738
Query: 543 LEQDP-----DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVAR 597
+ +P D E ++E ER + G+K LLLGRRGVF G +E +H HWK+RE+ +
Sbjct: 739 AKTNPTDAPLDKEFLSEAERYMYRQQGLKHKGYLLLGRRGVFGGTVENMHLHWKHRELVK 798
Query: 598 VITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSK 657
++ K + A+ TAK L ESGGIL+ + +G AII+YRGKNY+RP +L ++LL+K
Sbjct: 799 ILVKAPI-AEAQQTAKMLERESGGILVDIVNTSKGQAIIVYRGKNYQRPSELRPRHLLTK 857
Query: 658 RQALRRSLEMQRLGSLK 674
RQAL+RSLE+QR+ SL+
Sbjct: 858 RQALKRSLEVQRMQSLE 874
>gi|449459492|ref|XP_004147480.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 1032
Score = 350 bits (899), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 220/594 (37%), Positives = 334/594 (56%), Gaps = 52/594 (8%)
Query: 103 WLREDRFVFRRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIR 162
W + D V + ++ER + AE L E L RL+ +++K + V KAG+TE +V I
Sbjct: 141 WKKRD-GVREKKREERAPSLAELSLTEEELGRLRTIGIRLKKKLNVGKAGITEGIVNTIH 199
Query: 163 LAWRRNELAMVKFDVPLCR-NMDRAREILELKTGGLVIWTKKDAHVVYRGDG---SKSSV 218
WRR+E+ + + LCR NM R ++LE KTGG+V+W ++YRG S
Sbjct: 200 EYWRRSEVVKIACE-DLCRLNMKRTHDLLERKTGGIVVWRSGSKIILYRGPNYIYPYFSH 258
Query: 219 KMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDK 278
++ P S H + N S +S + ++ RS +P+ +
Sbjct: 259 EILEDEGSQDALPAS-----HSDDGGN-SETESTLSCINDERSAGPTSSVKMPSPTLIQG 312
Query: 279 NLRIDKSLYEREGD--------RLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFR 330
++ ++ G+ LL+GLGPRF DWW + PLPVD DLLP +VPG++ PFR
Sbjct: 313 VGAPNRVRFQLPGEAELAEDAESLLEGLGPRFSDWWGYDPLPVDADLLPAIVPGYRKPFR 372
Query: 331 LSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKW 390
L P + KLT+DE+T LR+LA PLP HF LGRNR LQGLA +I++LWEK +AKI VK
Sbjct: 373 LLPYGVKPKLTNDEMTSLRRLARPLPCHFALGRNRKLQGLAASIIQLWEKCEIAKIAVKR 432
Query: 391 GIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFL 450
G+ NT+N+ MA EL+ + R++ I+LYRGKDFL
Sbjct: 433 GVQNTNNKLMAEELQLLTGGTLLS---------------------RDREFIVLYRGKDFL 471
Query: 451 PCGVENLIVERERELQICQNHE---------EGARLKAIETFHLPDEPLEKTSKAGTLSE 501
P V + + E++R +++ + + +G +L+ E +E T +SE
Sbjct: 472 PFAVSSAM-EQKRHMRLHEMKQTDNSPATTGQGLKLEINENGPT-NESQSITGWKKIVSE 529
Query: 502 FQNIQSDFGDLKMGNREFELQLEAEIEDLERELRKQERKLLLEQDPDLEMITEEERQCLH 561
+ + S ++ + + + LE + + E + +E + L + + D E IT EER L
Sbjct: 530 RRKLMSSETSMRKTSIKLSIALEKKAKAEEFLAKLEEEEKLQQPEIDKEGITVEERYMLK 589
Query: 562 KIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGG 621
K+G+++ LLLGRRGVFDG +E +H HWKYRE+ ++IT ++ F V A++L AESGG
Sbjct: 590 KVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIITNERSFKTVHDVARTLEAESGG 649
Query: 622 ILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKF 675
IL++V+++K AIII+RGKNY+RP +L ++LL+K++AL+RS+E QR SLK
Sbjct: 650 ILVAVERVKRSFAIIIFRGKNYKRPSRLRPESLLNKKEALKRSIEAQRRKSLKL 703
>gi|116310121|emb|CAH67138.1| OSIGBa0130P02.2 [Oryza sativa Indica Group]
Length = 1048
Score = 349 bits (896), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 230/630 (36%), Positives = 320/630 (50%), Gaps = 122/630 (19%)
Query: 132 LERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILE 191
L RL+ ++R +KV KAGVTE +V I WR EL ++ D NM R EILE
Sbjct: 146 LRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILE 205
Query: 192 LKTGGLVIWTKKDAHVVYRG---------------DGSKSSVKMCPRSADDQEAPLS--- 233
KTGGLVIW ++YRG D +SS S+DD++A L+
Sbjct: 206 RKTGGLVIWRSGSTIILYRGTDYKYPYFQDREMKNDMDESSEHT---SSDDEDADLAIIA 262
Query: 234 ----------------KSTHLH----LEKKVNVSWIKSN-----------TATLDQNRSL 262
S H L ++ V ++ N +AT DQ L
Sbjct: 263 SEQSGSEEDSDNPAEHGSNHTEEGDDLTRRFGVDALEGNLDIGSAEQSINSATKDQQAIL 322
Query: 263 KDGEENSLPTSIFMDKNLRIDKSL---------------YEREGDRLLDGLGPRFVDWWM 307
S P+ I + + E D+LLDGLGPRF DWW
Sbjct: 323 HTSTNVSRPSEISGRARSTLVAGVGSPNKFRLQLPGEVKLAEEADKLLDGLGPRFSDWWG 382
Query: 308 WKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGL 367
+ PLPVD DLLP +VPG++ PFRL P +LTD E+T LR+LA PLP H+ LGR+ L
Sbjct: 383 YDPLPVDADLLPAIVPGYRRPFRLLPSGVPPRLTDREMTILRRLARPLPYHYALGRSSNL 442
Query: 368 QGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQH 427
QGLA +++KLWE+ VAK+ +K G N D++ ++ +LK
Sbjct: 443 QGLAASMIKLWERCEVAKVAIKRGAENIDSDLISEKLKG--------------------- 481
Query: 428 LTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQIC-----------QNHEEGAR 476
LTGG LL R+ I+ YRGKDFLP V +L +E+ R+ + ++
Sbjct: 482 LTGGTLLSRDNESIVFYRGKDFLPTAV-SLAIEKRRKYGNSTISNPKLNFDKSTPQNSSK 540
Query: 477 LKAIETFHLP----------DEPLEKTSKAGTLSEF-QNIQSDFGDLKMGNREFELQLEA 525
LK L DE ++A +L+ F QN+++ + +E +L
Sbjct: 541 LKMATDVSLDGHECYEKKHKDETAVSDNRAESLNVFTQNVEARLSQ-AIAEKEKTEKLIE 599
Query: 526 EIEDLERELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEG 585
E+E R + R E+I+EEER L K+G+K+ S LLLGRRGVFDG +E
Sbjct: 600 ELEMSSEPSRAETR----------EVISEEERYMLRKVGLKMKSFLLLGRRGVFDGTVEN 649
Query: 586 LHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRR 645
+H HWKYRE+ ++I K+ V Y A++L AESGGIL++V+++ + HAIIIYRGKNY+R
Sbjct: 650 MHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSKAHAIIIYRGKNYQR 709
Query: 646 PLKLMTQNLLSKRQALRRSLEMQRLGSLKF 675
P L ++LL+K+ AL+RS+E QR SLK
Sbjct: 710 PSTLRPKSLLNKKDALKRSVEYQRYKSLKL 739
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 555 EERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKS 614
+E + L G+++ + L +G+ GV +G++ G+H+ W+ E+ ++ + T +
Sbjct: 144 DELRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEI 203
Query: 615 LVAESGGILISVDKLKEGHAIIIYRGKNYRRP 646
L ++GG++I + G II+YRG +Y+ P
Sbjct: 204 LERKTGGLVI----WRSGSTIILYRGTDYKYP 231
>gi|449515235|ref|XP_004164655.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 1053
Score = 347 bits (891), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 223/603 (36%), Positives = 343/603 (56%), Gaps = 69/603 (11%)
Query: 103 WLREDRFVFRRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIR 162
W + D V + ++ER + AE L E L RL+ +++K + V KAG+TE +V I
Sbjct: 161 WKKRD-GVREKKREERAPSLAELSLTEEELGRLRTIGIRLKKKLNVGKAGITEGIVNTIH 219
Query: 163 LAWRRNELAMVKFDVPLCR-NMDRAREILELKTGGLVIWTKKDAHVVYRG---------- 211
WRR+E+ + + LCR NM R ++LE KTGG+V+W ++YRG
Sbjct: 220 EFWRRSEVVKIACE-DLCRLNMKRTHDLLERKTGGIVVWRSGSKIILYRGPNYIYPYFSH 278
Query: 212 -----DGSKSSVKMCPRSADDQEAPLSKST--HLHLEKKVN-VSWIKSNTATLDQNRSLK 263
+GS+ ++ +DD ++ST ++ E+ S++K + TL Q
Sbjct: 279 EILEDEGSQDALPAS--HSDDGGNSETESTLSCINDERSAGPTSYVKMPSPTLIQGVGAP 336
Query: 264 DGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVP 323
+ LP + L E + + LL+GLGPRF DWW + PLPVD DLLP +VP
Sbjct: 337 NRVRFQLPG----------EAELAE-DAESLLEGLGPRFSDWWGYDPLPVDADLLPAIVP 385
Query: 324 GFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLV 383
G++ PFRL P + KLT+DE+T LR+LA PLP HF LGRNR LQGLA +I++LWEK +
Sbjct: 386 GYRKPFRLLPYGVKPKLTNDEMTSLRRLARPLPCHFALGRNRKLQGLAASIIQLWEKCEI 445
Query: 384 AKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIIL 443
AKI VK G+ NT+N+ MA EL+ + R++ I+L
Sbjct: 446 AKIAVKRGVQNTNNKLMAEELQLLTGGTLLS---------------------RDREFIVL 484
Query: 444 YRGKDFLPCGVENLIVERERELQICQ-NHEEGARLKAIETFHLPDEPLEKTSKAGTLSEF 502
YRGKDFLP V + + E++R +++ + + + + L T+++ +++ +
Sbjct: 485 YRGKDFLPFAVSSAM-EQKRHMRLHEMKQTDNSPATTGQGLKLEINENGPTNESQSITGW 543
Query: 503 QNIQSD-----FGDLKMGNREFELQL-----EAEIEDLERELRKQERKLLLEQDPDLEMI 552
+ I S+ + M +L + +A+ E+ +L ++E+ L + + D E I
Sbjct: 544 KKIVSERRKLMSSETSMRKTSIKLSIVCIRKKAKAEEFLAKLEEEEK--LQQPEIDKEGI 601
Query: 553 TEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTA 612
T EER L K+G+++ LLLGRRGVFDG +E +H HWKYRE+ ++IT ++ F V A
Sbjct: 602 TVEERYMLKKVGLRMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIITNERSFKTVHDVA 661
Query: 613 KSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGS 672
++L AESGGIL++V+++K AIII+RGKNY+RP +L ++LL+K++AL+RS+E QR S
Sbjct: 662 RTLEAESGGILVAVERVKRSFAIIIFRGKNYKRPSRLRPESLLNKKEALKRSIEAQRRKS 721
Query: 673 LKF 675
LK
Sbjct: 722 LKL 724
>gi|449452735|ref|XP_004144114.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 846
Score = 344 bits (882), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 235/649 (36%), Positives = 343/649 (52%), Gaps = 62/649 (9%)
Query: 56 NIEKLQKDQILDETQ--KKVMEKFEFKGCFEENVSHEEDLRGGFGGKV--PWLRE---DR 108
+I+++ D DE + V+ E + + + H G+V PW RE D
Sbjct: 201 SIDEISDDSSEDEAEIDTVVLPVTEKRSTLSKKIVHSVSSDNDDNGRVDLPWKREPRRDS 260
Query: 109 FVFRRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRN 168
V ++ + + AE ML L RL++ + +M + ++V G+T+ ++ I W+ +
Sbjct: 261 EVDAGQRRSKTLL-AEQMLPEHELRRLRNISLRMVERIEVGVKGITQELLDSIHEKWKVD 319
Query: 169 ELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQ 228
E+ +KF+ PL NM RA E LE +TGGLVIW V+YRG + C +S Q
Sbjct: 320 EVVKLKFEGPLTVNMKRAHEKLENRTGGLVIWRSGSLIVLYRG---MTYHLPCVQSYAKQ 376
Query: 229 EAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYE 288
+KS L + V +S+ T ++ G +++ + K L E
Sbjct: 377 NQ--AKSNTLDVPNNV-----ESDDITRNEKLHTTVGTMSTIVSGASKHTKTLSKKELME 429
Query: 289 -REGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTY 347
+ + LLD +GPRF DW +P+PVD DLLP +VPG+KPP R+ P R L + E+T
Sbjct: 430 LSDLNHLLDEIGPRFKDWSGCEPVPVDADLLPGIVPGYKPPTRILPYGVRHCLRNKEVTI 489
Query: 348 LRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKAS 407
R+LA +P HF LGRNR LQGLA A++KLWEK +AKI +K G+ NT NE+MA EL+
Sbjct: 490 FRRLARKMPPHFALGRNRQLQGLANAMVKLWEKCAIAKIAIKRGVENTRNERMAEELRI- 548
Query: 408 LAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQI 467
LTGG LL RNK I+ YRG D+LP + + ER +
Sbjct: 549 --------------------LTGGTLLSRNKEYIVFYRGNDYLPPTITEALKERRKLADR 588
Query: 468 CQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGN-----REFEL- 521
Q+ EE R A + AGTL+E S +G G+ RE
Sbjct: 589 QQDVEEQVRQVASAAIESKVKASNAPLVAGTLTETIAATSRWGSQPSGHDIENMREDSAL 648
Query: 522 -QLEAEIE--------------DLERELRK-QERKLLLEQDPDLEMITEEERQCLHKIGM 565
+L++ IE + E+ + K QE+K + DLE IT+EER KIG+
Sbjct: 649 AKLDSLIEYLKKKLALAKCKVKNAEKIIAKLQEKKEPSDLPTDLETITDEERLLFRKIGL 708
Query: 566 KINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILIS 625
+ LLLGRRGV+DG +E +H HWK+RE+ ++I + K QV + A SL AES G++IS
Sbjct: 709 SMKPYLLLGRRGVYDGTVENMHLHWKFRELVKIIVRGKTLQQVKHVAISLEAESNGVVIS 768
Query: 626 VDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLK 674
+DK +G+ +I+YRGKNY RP + +N+L++RQAL RS+E+QR +LK
Sbjct: 769 LDKTTKGYEVIVYRGKNYTRPDAMRPKNMLTRRQALARSIELQRREALK 817
>gi|356564786|ref|XP_003550629.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 794
Score = 343 bits (881), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 232/612 (37%), Positives = 318/612 (51%), Gaps = 70/612 (11%)
Query: 94 RGGFGGKVPWLREDRFVFRRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGV 153
R G +V +R R K+ AE + L RL+ A +M + V G+
Sbjct: 168 RKGMASEVSSNEAERVNGERKKRRSNTELAERTIPEHELRRLRKIALRMMERFDVGVKGI 227
Query: 154 TESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDG 213
T+ +V + WR E+ KF +PL +M +A +ILE K GG+VIW + V+YRG
Sbjct: 228 TQELVASVHQKWRDAEVVKFKFGIPLSAHMKKAHQILESKIGGIVIWRSGSSIVLYRGMA 287
Query: 214 SK-------SSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGE 266
K V + +A D + + + VN + + + + LKD
Sbjct: 288 YKLPCIENYKKVNLAKENAVDHSLHVGNGSDG--QASVNETVGTAESVIQESAEYLKDMS 345
Query: 267 ENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFK 326
E L ++ LLD LGPRF DW +PLPVD DLLP VVPG+K
Sbjct: 346 EEELMEMCDLN---------------HLLDELGPRFKDWTGRQPLPVDADLLPAVVPGYK 390
Query: 327 PPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKI 386
PFRL P R LT+ E+T R+LA HF LGRNR LQGLA A++KLWE S +AKI
Sbjct: 391 TPFRLLPYRIRPCLTNKEMTNFRRLARTTAPHFALGRNRELQGLARAMVKLWETSAIAKI 450
Query: 387 TVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRG 446
+K G+PNT N++MA EL+ LTGG LL RNK I+ YRG
Sbjct: 451 AIKRGVPNTCNDRMAEELRK---------------------LTGGTLLSRNKEYIVFYRG 489
Query: 447 KDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQ 506
DFLP V N + ER++ + Q+ E+ AR A + + AGTL+E +
Sbjct: 490 NDFLPPVVTNTLNERQKLTLLQQDEEDKARQIASSITVSNSKAAQVPLIAGTLTETRAAT 549
Query: 507 SDFGDLKMGNREFE--------LQLEAEIEDLEREL-------RKQERKLLLEQ---DP- 547
+++G + +E E +L A ++ E++L RK E+ L Q DP
Sbjct: 550 TNWGH-QPSKQEIENMIRDSAMNKLSALVKHHEKKLALAKSKFRKAEKALAKVQRDLDPA 608
Query: 548 ----DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQK 603
DLE +T EER KIG+ + LLLGRR V+ G IE +H HWKYRE+ ++I K +
Sbjct: 609 DIPSDLETLTNEERFLFRKIGLSMKPYLLLGRRDVYAGTIENMHLHWKYRELVKLIVKGR 668
Query: 604 LFAQVIYTAKSLVAESGGILISVDKLKEG-HAIIIYRGKNYRRPLKLMTQNLLSKRQALR 662
AQV + + SL AESGG+L+SVDK G H II+YRGKNY P + +NLL++RQAL
Sbjct: 669 NSAQVKHISISLEAESGGVLVSVDKDTRGHHTIIVYRGKNYFSPRVVRPKNLLTRRQALA 728
Query: 663 RSLEMQRLGSLK 674
RS+E+QR +LK
Sbjct: 729 RSVELQRREALK 740
>gi|334187011|ref|NP_194704.2| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|332660271|gb|AEE85671.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 841
Score = 343 bits (881), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 229/588 (38%), Positives = 324/588 (55%), Gaps = 73/588 (12%)
Query: 113 RMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAM 172
R +K V +AE ++ L+RL++ A +M + VKV AG+T+++V I W +E+
Sbjct: 231 RTRKSNTV-EAERIVPEHELKRLRNVALRMVERVKVGSAGITQALVEAIHEKWEVDEVVK 289
Query: 173 VKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPL 232
+KF P NM R E+LE KTGGLVIW + V+YRG K ++ EA
Sbjct: 290 LKFSEPYSLNMKRTHEVLEKKTGGLVIWRSGSSVVLYRGISYKLKCVQTFIKQNNLEA-- 347
Query: 233 SKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGD 292
+ H +E + V E+ + P KN+ ++ E +
Sbjct: 348 NPEIHRSVEARDYVQ------------------EDGNYP------KNVPKEQLSELCELN 383
Query: 293 RLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLA 352
LLD +GPRF DW P PVD DLLP V G++ PFR+ P + L++ E+T +R+LA
Sbjct: 384 DLLDEVGPRFHDWTGCAPFPVDADLLPGYVEGYRCPFRILPQGVKPCLSNTEMTEMRRLA 443
Query: 353 HPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWK 412
P HF LGR+R LQGLA A++KLW KS +AKI +K G+ NT NE+MA ELK
Sbjct: 444 RTSPPHFALGRSRELQGLAKAMVKLWAKSAIAKIAIKRGVENTRNERMAEELK------- 496
Query: 413 PNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVEREREL-QICQNH 471
LT GVL+ RNK I+ YRG DF+P V + ER++E+ ++ Q
Sbjct: 497 --------------RLTRGVLVSRNKEYIVFYRGNDFMPPAVAEALTERQKEITEVLQAK 542
Query: 472 EEGARLKAIETFHLPDEPLEKTSK--AGTLSEFQNIQSDFG------DLKMGNRE-FELQ 522
E+ AR A L + ++ AGTL+E S + D++ RE ++
Sbjct: 543 EDQAREMASTRATLTSQAKSPKTQLLAGTLAETIAASSRWAPNASSVDIEELKRESASIK 602
Query: 523 LEAEIEDLE-------RELRKQERKLLLEQ---DP-----DLEMITEEERQCLHKIGMKI 567
A I DLE ++LR+ ER L Q DP D E+ITEEER KIG+ +
Sbjct: 603 RAALIRDLELRLLYGKQKLRRAERDLAKVQKDLDPSELPTDSEIITEEERLLYRKIGLSM 662
Query: 568 NSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVD 627
+ LLLGRR V+DG IE +H HWK+RE+ +VI + K QV + A SL AESGG+L+SVD
Sbjct: 663 DPFLLLGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVD 722
Query: 628 KLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKF 675
K +G+AII+YRGKNY+ P +L NLL++++A RS+E+QR +LK+
Sbjct: 723 KTMKGYAIILYRGKNYQMPFRLRPSNLLTRKKAFARSIELQRREALKY 770
>gi|449529423|ref|XP_004171699.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like, partial [Cucumis sativus]
Length = 789
Score = 343 bits (881), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 235/651 (36%), Positives = 343/651 (52%), Gaps = 62/651 (9%)
Query: 56 NIEKLQKDQILDETQ--KKVMEKFEFKGCFEENVSHEEDLRGGFGGKV--PWLRE---DR 108
+I+++ D DE + V+ E + + + H G+V PW RE D
Sbjct: 144 SIDEISDDSSEDEAEIDTVVLPVTEKRSTLSKKIVHSVSSDNDDNGRVDLPWKREPRRDS 203
Query: 109 FVFRRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRN 168
V ++ + + AE ML L RL++ + +M + ++V G+T+ ++ I W+ +
Sbjct: 204 EVDAGQRRSKTLL-AEQMLPEHELRRLRNISLRMVERIEVGVKGITQELLDSIHEKWKVD 262
Query: 169 ELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQ 228
E+ +KF+ PL NM RA E LE +TGGLVIW V+YRG + C +S Q
Sbjct: 263 EVVKLKFEGPLTVNMKRAHEKLENRTGGLVIWRSGSLIVLYRG---MTYHLPCVQSYAKQ 319
Query: 229 EAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYE 288
+KS L + V +S+ T ++ G +++ + K L E
Sbjct: 320 NQ--AKSNTLDVPNNV-----ESDDITRNEKLHTTVGTMSTIVSGASKHTKTLSKKELME 372
Query: 289 -REGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTY 347
+ + LLD +GPRF DW +P+PVD DLLP +VPG+KPP R+ P R L + E+T
Sbjct: 373 LSDLNHLLDEIGPRFKDWSGCEPVPVDADLLPGIVPGYKPPTRILPYGVRHCLRNKEVTI 432
Query: 348 LRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKAS 407
R+LA +P HF LGRNR LQGLA A++KLWEK +AKI +K G+ NT NE+MA EL+
Sbjct: 433 FRRLARKMPPHFALGRNRQLQGLANAMVKLWEKCAIAKIAIKRGVENTRNERMAEELRI- 491
Query: 408 LAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQI 467
LTGG LL RNK I+ YRG D+LP + + ER +
Sbjct: 492 --------------------LTGGTLLSRNKEYIVFYRGNDYLPPTITEALKERRKLADR 531
Query: 468 CQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGN-----REFEL- 521
Q+ EE R A + AGTL+E S +G G+ RE
Sbjct: 532 QQDVEEQVRQVASAAIESKVKASNAPLVAGTLTETIAATSRWGSQPSGHDIENMREDSAL 591
Query: 522 -QLEAEIE--------------DLERELRK-QERKLLLEQDPDLEMITEEERQCLHKIGM 565
+L++ IE + E+ + K QE+K + DLE IT+EER KIG+
Sbjct: 592 AKLDSLIEYLKKKLALAKCKVKNAEKIIAKLQEKKEPSDLPTDLETITDEERLLFRKIGL 651
Query: 566 KINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILIS 625
+ LLLGRRGV+DG +E +H HWK+RE+ ++I + K QV + A SL AES G++IS
Sbjct: 652 SMKPYLLLGRRGVYDGTVENMHLHWKFRELVKIIVRGKTLQQVKHVAISLEAESNGVVIS 711
Query: 626 VDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKFF 676
+DK +G+ +I+YRGKNY RP + +N+L++RQAL RS+E+QR +LK
Sbjct: 712 LDKTTKGYEVIVYRGKNYTRPDAMRPKNMLTRRQALARSIELQRREALKHH 762
>gi|356573410|ref|XP_003554854.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 1028
Score = 342 bits (876), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 229/589 (38%), Positives = 320/589 (54%), Gaps = 63/589 (10%)
Query: 113 RMKKERMVTKAETMLDGELLERLKDEA-RKMRKWVKVKKAGVTESVVFEIRLAWRRNELA 171
R +KE + T AE L + RL +K V++ KAG+TE +V I W+R+E+
Sbjct: 134 RRRKELVPTLAELSLPDSEIRRLTTLGFSTTKKKVRLAKAGITEQIVDVIHERWKRSEVV 193
Query: 172 MVKFDVPLCRN-MDRAREILELKTGGLVIWTKKDAHVVYRGDGSK--------------- 215
V F L R+ M R ++LE KTGGLV+W ++YRG K
Sbjct: 194 RV-FCEELSRDDMRRTHDLLERKTGGLVVWRSGTKIILYRGADYKYPYFLSDKVTRQDNT 252
Query: 216 SSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIF 275
S+ + +ADD+ S+S HL + V + SN T L G N + +
Sbjct: 253 SNDALQHVNADDKYCDKSES-HLSEKNSVACAVENSNAETAKPALILGVGTPNKVRFQL- 310
Query: 276 MDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPD 335
D++ + D LL GLGPRF DWW PLPVD DLLP V+ G++ PFRL P
Sbjct: 311 ------PDEAELAEDTDCLLTGLGPRFTDWWGGDPLPVDADLLPAVIHGYRKPFRLLPYG 364
Query: 336 ARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNT 395
KLTDDE+T L++L PLP HF LGRNR LQGLA AI+KLWE+ + KI VK G+ NT
Sbjct: 365 VNPKLTDDEMTTLKRLGKPLPCHFALGRNRKLQGLAAAIIKLWERCEIVKIAVKRGVQNT 424
Query: 396 DNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVE 455
++ MA ELK HLTGG+LL R++ + YRGKD+LP V
Sbjct: 425 SSKIMAKELK---------------------HLTGGILLSRDREFFVFYRGKDYLPAAVS 463
Query: 456 NLIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMG 515
+ I +++R + + + + G L A T + D +E S+ + N Q D +
Sbjct: 464 SAI-KKQRNIGMYK-LKFGNSLSATVTPNPKDGTIECNSEVKGM----NFQKDTKQRMLT 517
Query: 516 NREFELQLEAEIEDLERELRKQERKLL---------LEQDPDLEMITEEERQCLHKIGMK 566
E ++ + + E + + KLL EQ+ D E I++EE+ L +IG+
Sbjct: 518 KAEEAIKRTSIKLSMALEKKAKAEKLLEKLINAESPQEQEIDKEGISKEEKYMLRRIGLM 577
Query: 567 INSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISV 626
+ LLLGRRGVFDG +E +H HWKYRE+ ++I L +V A +L AESGGIL++V
Sbjct: 578 MKPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNGSL-EEVHQIALTLEAESGGILVAV 636
Query: 627 DKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKF 675
+++++G AII+YRGKNY P+ L Q LL+KRQAL+RS+E QR SLK
Sbjct: 637 ERVRKGFAIIVYRGKNYSVPVCLRPQTLLNKRQALKRSIEAQRRESLKL 685
>gi|242076096|ref|XP_002447984.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
gi|241939167|gb|EES12312.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
Length = 800
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 233/640 (36%), Positives = 325/640 (50%), Gaps = 113/640 (17%)
Query: 124 ETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNM 183
E L + L RL+ ++RK +KV KAG+TE +V I WR E+ ++ + NM
Sbjct: 142 ELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNM 201
Query: 184 DRAREILELKTGGLVIWTKKDAHVVYRGDG----------------SKSSVKMCPRSADD 227
R EILE KTGGLVIW ++YRG K S + +D
Sbjct: 202 RRTHEILERKTGGLVIWRSGSTIILYRGTNYKYPYFHYSERVDSFLDKESSDLSSSGDED 261
Query: 228 QEAPLSK---STH--------LHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTS--- 273
+E S S+H + +++N KS T N+SL ++ + P S
Sbjct: 262 EEDETSSQHDSSHEESSENPVVACTEQINAGEGKSQTVGY-LNQSLSREKDTTHPISSTK 320
Query: 274 --IF--------------------MDKNLRIDK--SLYEREGDRLLDGLG---------- 299
+F + +N R D+ RE L+ G+G
Sbjct: 321 RLVFDTNEGNLDIRTGAPNEQHARLQENTRADRPSKFGPRERSSLVAGVGSPNKFRLQLP 380
Query: 300 -----------------PRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTD 342
PRF WW + PLPVD DLLP +VPG++ PFRL P KLTD
Sbjct: 381 GEVKLAEEADKLLDGLGPRFSGWWGYDPLPVDADLLPAIVPGYRRPFRLLPSGVPPKLTD 440
Query: 343 DELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMAN 402
E+T LR+LAHPLP H+ LGR+ LQGLA +++KLWE+ VAKI +K NTD+E +
Sbjct: 441 REMTILRRLAHPLPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTDSELITE 500
Query: 403 ELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERE 462
E+K LTGG LL R+K I+ YRGKDFLP V +L +E+
Sbjct: 501 EIK---------------------DLTGGTLLSRDKESIVFYRGKDFLPPAV-SLAIEKR 538
Query: 463 RELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTL------SEFQNIQSDFGDLKMGN 516
R+L ++ ++ E D+ + K S ++ + +++ + N
Sbjct: 539 RKLGSSTIYKPKPDIE--ENMPTQDDSVLKVSNDVSVHIREEGTSVTEVRAKSLNTVAKN 596
Query: 517 REFEL-QLEAEIEDLERELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGR 575
E L Q AE E E+ L + E+ L + E I+E+ER L K+G+K+ LLLGR
Sbjct: 597 VEARLSQAIAEKERAEKLLEELEKASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGR 656
Query: 576 RGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAI 635
RGVFDG IE +H HWKYRE+ ++I K+ V Y A++L AESGGIL++V+K+ +GHAI
Sbjct: 657 RGVFDGTIENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAI 716
Query: 636 IIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKF 675
I+YRGKNY+RP KL + LLSKR AL+RS+E QR SLK
Sbjct: 717 IVYRGKNYQRPSKLRPKTLLSKRDALKRSVENQRCKSLKV 756
>gi|357521157|ref|XP_003630867.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355524889|gb|AET05343.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 676
Score = 318 bits (816), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 213/612 (34%), Positives = 304/612 (49%), Gaps = 144/612 (23%)
Query: 127 LDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRA 186
L+ E L RL+ +++ + + K+G+T SV+ I W NEL +KF L +NM+ A
Sbjct: 106 LEKEELSRLRTMGIHLKQKISIPKSGLTRSVLQRIHHQWNTNELVKLKFHQQLVQNMNLA 165
Query: 187 REILEL------------------------------------------KTGGLVIWTKKD 204
I+++ +TGGLVIW
Sbjct: 166 HNIVQVSIPSSRIIPYRMVIVLQLVILCFFFHHRITNLVPSGLYLLVRRTGGLVIWRSGS 225
Query: 205 AHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKD 264
VYRG + P + + E+ K
Sbjct: 226 VMWVYRGKSYQG-----PTNGNQHES--------------------------------KG 248
Query: 265 GEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPG 324
G+E S S+ +++ + + E E +R+LD GPRFVDWW LPVD DLLP +PG
Sbjct: 249 GDEKS--ESVVLNQQQPENMTPEEAEFNRMLDDFGPRFVDWWGTGILPVDADLLPPTIPG 306
Query: 325 FKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVA 384
++ P R+ P +LT+DE T + KLA LP HF LGRNR LQGLA AILKLWEKSLVA
Sbjct: 307 YRTPLRILPARMHPRLTNDEHTKMLKLAKALPCHFALGRNRNLQGLACAILKLWEKSLVA 366
Query: 385 KITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILY 444
KI VK G+ NT+NE MA ELK LTGG LLLRNK+ I++Y
Sbjct: 367 KIAVKLGVQNTNNELMALELKK---------------------LTGGTLLLRNKYYILIY 405
Query: 445 RGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQN 504
RGKDF+P V ++ ER +E + +A++ E +++AG+++EF
Sbjct: 406 RGKDFIPTSVAAILSER----------QENVQCRAVDV----SGEDETSAQAGSMAEFNE 451
Query: 505 IQSDFGDLKMGNREFELQLEAEIEDLE-RELRKQER-----------------KLLLEQD 546
Q+ G ++ E E ++ E R ++K ER KLL + D
Sbjct: 452 AQALCGR-EISTEECEKMMKEAAEATNVRLMKKIERKPAVIHEHTDTKKSRAEKLLAKID 510
Query: 547 PDL---------EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVAR 597
+ E IT+EER +G+++ L L GVFD VIE +H HW+ RE+ +
Sbjct: 511 SSMVPVGPDNRRETITDEERVMFRVVGLRLKVYLQLDTLGVFDSVIENMHLHWRQRELVK 570
Query: 598 VITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSK 657
+ITKQK A V TA L +SGGIL+++D+L +G ++I YRGK+Y+RP+ L +NLL+K
Sbjct: 571 LITKQKSLAFVEETASLLEYKSGGILVAIDRLPKGFSLIYYRGKDYKRPITLRHRNLLTK 630
Query: 658 RQALRRSLEMQR 669
+AL+ S+ MQR
Sbjct: 631 TKALQHSISMQR 642
>gi|168024308|ref|XP_001764678.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683972|gb|EDQ70377.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 625
Score = 318 bits (816), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 221/575 (38%), Positives = 310/575 (53%), Gaps = 72/575 (12%)
Query: 132 LERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILE 191
L+RL+ +++ +K+ + GVT +V I WR E+A VK D PL NM +A E LE
Sbjct: 38 LKRLRTLGLQLQGRLKIGRLGVTPGIVEAIHERWRTCEIAKVKCDAPLSMNMKKAHEDLE 97
Query: 192 LKTGGLVIWTKKDAHVVYRG-DGSKSSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIK 250
TGGLVIW A VVYRG D SV+ + + L S +L +++
Sbjct: 98 RLTGGLVIWRSGSAAVVYRGKDYVHPSVREREEREERERRKLL-SLNLDEDEEREEQIDS 156
Query: 251 SNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKP 310
++T ++++ LK +EN L R + +LDGLGPR+ DW +P
Sbjct: 157 TSTVSVEREAYLKK-QENDL------------------RMVEEILDGLGPRYADWTGRRP 197
Query: 311 LPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGL 370
+PVDGDLL FK PFRL P + KL + ELT LR LA P+P H VLG+NRGL G+
Sbjct: 198 VPVDGDLLLSSDFEFKRPFRLLPYGVKPKLNNFELTELRHLARPIPPHIVLGKNRGLDGV 257
Query: 371 ATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTG 430
A AI+KLWE+S + KI VK G+ NT NE+MA ELK LTG
Sbjct: 258 AAAIVKLWERSEIVKIGVKRGVQNTSNERMAEELK---------------------RLTG 296
Query: 431 GVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEE----GARLKAIETFHLP 486
G LL R+K I+ +RGKDFLP V+ + ER++ + Q EE G R + ++
Sbjct: 297 GTLLSRDKEFIVFHRGKDFLPPAVQAALEERDQMAKALQEEEERFRMGGRSRPVQVVE-- 354
Query: 487 DEPLEKTSKAGTLSEFQNIQS------DFGDLKMGNREFELQLEAEIED-----LERELR 535
+ + K GTL E ++ D + + + A+ D L L+
Sbjct: 355 ETRYQGVYKVGTLEEALETRAKWEAWLDSDEARKERIAARKRKRAQATDRIRSKLNLALK 414
Query: 536 KQER------KLLLEQDP-----DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIE 584
K ER K+ + P D E +++ ER K+G+K+ + LLLGRRGVF G +E
Sbjct: 415 KMERAQLELNKVEAKTTPANVTLDKEHLSDGERYMYRKLGLKMKAFLLLGRRGVFSGTVE 474
Query: 585 GLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYR 644
+H HWKYRE+ +++ K L + AK L ESGGIL+ + +G AI++YRGKNY+
Sbjct: 475 NMHLHWKYRELVKILVKTSL-PEAERIAKILENESGGILVDIITTSKGQAIVMYRGKNYQ 533
Query: 645 RPLKLMTQNLLSKRQALRRSLEMQRLGSL-KFFRI 678
RP +L ++LL+KRQAL+RSLEMQR+ SL K R+
Sbjct: 534 RPSELRPRHLLTKRQALKRSLEMQRMESLEKHIRV 568
>gi|125549065|gb|EAY94887.1| hypothetical protein OsI_16687 [Oryza sativa Indica Group]
Length = 893
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 219/603 (36%), Positives = 303/603 (50%), Gaps = 139/603 (23%)
Query: 101 VPWLREDRFVFRRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFE 160
+PW RE R +K AE + L RL+D A +M++ ++V GVT+ +V
Sbjct: 316 LPWEREGDV--DRPRKRSNTELAERTIPEHELRRLRDVALRMKERMRVGPGGVTQLIVES 373
Query: 161 IRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKM 220
I W R E+++L+ G S+ M
Sbjct: 374 IHQKW-------------------RVEEVVKLRFEG------------------PPSLNM 396
Query: 221 CPRSADDQEAPLSKSTHLHLEKKVN--VSWIKSNTATLDQNRSLKDGEENSLPTSIFMDK 278
K TH LE++ V W + L + M+
Sbjct: 397 -------------KRTHDILEERTGGIVIWRSGRSVVLYRG----------------MNY 427
Query: 279 NLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARS 338
NLR +S + LGPR+ DW P+PVD DLLP VVPG+K PFRL P +S
Sbjct: 428 NLRCVQSYTQ------TTELGPRYKDWSGRGPIPVDADLLPGVVPGYKTPFRLLPYMVKS 481
Query: 339 KLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNE 398
L + E+T LR+LA HF LGRNR QGLATAI+KLWEKS +AKI +K G+PNT N+
Sbjct: 482 TLRNKEMTALRRLARQTAPHFALGRNREHQGLATAIVKLWEKSSIAKIAIKRGVPNTCND 541
Query: 399 QMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLI 458
+MA E++ LTGGVLL RNK I+ YRG DF+ V ++
Sbjct: 542 RMAEEIR---------------------KLTGGVLLSRNKEYIVFYRGNDFITPKVRQVL 580
Query: 459 VERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNRE 518
VE++ + Q+ EE ARLKA + + + + AGTL+E + +S +GD
Sbjct: 581 VEKQEQAITWQDEEELARLKASASISVKPKVFKNPPVAGTLAETREAKSRWGD------- 633
Query: 519 FELQLEAEIEDLERE----------LRKQERKLLL----------------------EQD 546
+ AE+ E+ LR +RKL+L E
Sbjct: 634 ---SINAELRKKEKNHMILTKHTSLLRNLKRKLILAKTKVIKAEKALAKVQEFLSPAELP 690
Query: 547 PDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFA 606
DLE +T+EER L +IG+K+ + L+LGRR VFDG ++ +H HWK+RE+ +V+ K K F
Sbjct: 691 TDLETVTDEERFLLRRIGLKMKAFLMLGRREVFDGTVQNMHLHWKHRELVKVLVKGKSFP 750
Query: 607 QVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLE 666
QV + A SL AESGG+LISVDK +G+AII+YRGKNY+ P L +NLLS+R+AL RS+E
Sbjct: 751 QVKHIAISLEAESGGVLISVDKTTKGYAIILYRGKNYKTPQILKPRNLLSRRKALARSIE 810
Query: 667 MQR 669
+QR
Sbjct: 811 LQR 813
>gi|154986383|gb|ABS89145.1| CFM2 [Zea mays]
Length = 942
Score = 312 bits (799), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 176/394 (44%), Positives = 242/394 (61%), Gaps = 31/394 (7%)
Query: 290 EGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLR 349
E D+LLDGLGPRF WW + P+PVD DLLP +VPG++ PFRL P KLTD E+T LR
Sbjct: 286 EADKLLDGLGPRFSGWWGYDPVPVDADLLPAIVPGYRRPFRLLPSGVPPKLTDREMTILR 345
Query: 350 KLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLA 409
+LAH LP H+ LGR+ LQGLA +++KLWE+ VAKI +K NTD+E + E+K
Sbjct: 346 RLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTDSELITEEVK---- 401
Query: 410 KWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQ 469
LTGG LL R+K I+ YRGKDFLP V +L +E+ R+L
Sbjct: 402 -----------------ELTGGTLLSRDKESIVFYRGKDFLPPAV-SLAIEKRRKLGSST 443
Query: 470 NHEEGARLKAIETFHLPDEPLEKTSKAGTL---SEFQNIQSDFGD-LKMGNREFELQLE- 524
++ A+ E+ ++ + K S ++ E ++ + + L ++ E +L
Sbjct: 444 IYK--AKPGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAESLNTVAKDVETRLSQ 501
Query: 525 --AEIEDLERELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGV 582
AE E+ + + E+ L + E I+E+ER L K+G+K+ LLLGRRGVFDG
Sbjct: 502 AIAEKAKAEKLIEELEKASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGVFDGT 561
Query: 583 IEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKN 642
IE +H HWKYRE+ ++I K+ V Y A++L AESGGIL++V+K+ +GHAII+YRGKN
Sbjct: 562 IENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKN 621
Query: 643 YRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKFF 676
Y+RP KL + LLSKR AL+RSLE QR SLK
Sbjct: 622 YKRPSKLRPKTLLSKRDALKRSLENQRCKSLKVH 655
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 52/91 (57%)
Query: 121 TKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLC 180
+ AE L + L RL+ ++RK +KV KAG+TE +V I WR E+ ++ +
Sbjct: 40 SAAELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWA 99
Query: 181 RNMDRAREILELKTGGLVIWTKKDAHVVYRG 211
NM R EILE KTGGLVIW ++YRG
Sbjct: 100 MNMRRTHEILERKTGGLVIWRSGSTIILYRG 130
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 555 EERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKS 614
+E + L IG+++ L +G+ G+ +G++ G+H+ W+ EV ++ + + T +
Sbjct: 49 DELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEI 108
Query: 615 LVAESGGILISVDKLKEGHAIIIYRGKNYRRP 646
L ++GG++I + G II+YRG NY P
Sbjct: 109 LERKTGGLVI----WRSGSTIILYRGTNYTYP 136
Score = 38.9 bits (89), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 65/135 (48%), Gaps = 15/135 (11%)
Query: 105 REDRFVFRRMKKERMVT---KAETMLDGELLERLKDEAR--------KMRKWVKVKKAGV 153
R + + + K E+++ KA + E+ E + ++ R KM++++ + + GV
Sbjct: 498 RLSQAIAEKAKAEKLIEELEKASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGV 557
Query: 154 TESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKK----DAHVVY 209
+ + + L W+ EL + +++ A LE ++GG+++ +K A +VY
Sbjct: 558 FDGTIENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVY 617
Query: 210 RGDGSKSSVKMCPRS 224
RG K K+ P++
Sbjct: 618 RGKNYKRPSKLRPKT 632
>gi|413918579|gb|AFW58511.1| CFM2 [Zea mays]
Length = 1039
Score = 312 bits (799), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 176/393 (44%), Positives = 242/393 (61%), Gaps = 31/393 (7%)
Query: 290 EGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLR 349
E D+LLDGLGPRF WW + P+PVD DLLP +VPG++ PFRL P KLTD E+T LR
Sbjct: 383 EADKLLDGLGPRFSGWWGYDPVPVDADLLPAIVPGYRRPFRLLPSGVPPKLTDREMTILR 442
Query: 350 KLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLA 409
+LAH LP H+ LGR+ LQGLA +++KLWE+ VAKI +K NTD+E + E+K
Sbjct: 443 RLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTDSELITEEVK---- 498
Query: 410 KWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQ 469
LTGG LL R+K I+ YRGKDFLP V +L +E+ R+L
Sbjct: 499 -----------------ELTGGTLLSRDKESIVFYRGKDFLPPAV-SLAIEKRRKLGSST 540
Query: 470 NHEEGARLKAIETFHLPDEPLEKTSKAGTL---SEFQNIQSDFGD-LKMGNREFELQLE- 524
++ A+ E+ ++ + K S ++ E ++ + + L ++ E +L
Sbjct: 541 IYK--AKPGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAESLNTVAKDVETRLSQ 598
Query: 525 --AEIEDLERELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGV 582
AE E+ + + E+ L + E I+E+ER L K+G+K+ LLLGRRGVFDG
Sbjct: 599 AIAEKAKAEKLIEELEKASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGVFDGT 658
Query: 583 IEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKN 642
IE +H HWKYRE+ ++I K+ V Y A++L AESGGIL++V+K+ +GHAII+YRGKN
Sbjct: 659 IENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKN 718
Query: 643 YRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKF 675
Y+RP KL + LLSKR AL+RSLE QR SLK
Sbjct: 719 YKRPSKLRPKTLLSKRDALKRSLENQRCKSLKV 751
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 52/91 (57%)
Query: 121 TKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLC 180
+ AE L + L RL+ ++RK +KV KAG+TE +V I WR E+ ++ +
Sbjct: 137 SAAELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWA 196
Query: 181 RNMDRAREILELKTGGLVIWTKKDAHVVYRG 211
NM R EILE KTGGLVIW ++YRG
Sbjct: 197 MNMRRTHEILERKTGGLVIWRSGSTIILYRG 227
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 555 EERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKS 614
+E + L IG+++ L +G+ G+ +G++ G+H+ W+ EV ++ + + T +
Sbjct: 146 DELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEI 205
Query: 615 LVAESGGILISVDKLKEGHAIIIYRGKNYRRP 646
L ++GG++I + G II+YRG NY P
Sbjct: 206 LERKTGGLVI----WRSGSTIILYRGTNYTYP 233
Score = 39.3 bits (90), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 65/135 (48%), Gaps = 15/135 (11%)
Query: 105 REDRFVFRRMKKERMVT---KAETMLDGELLERLKDEAR--------KMRKWVKVKKAGV 153
R + + + K E+++ KA + E+ E + ++ R KM++++ + + GV
Sbjct: 595 RLSQAIAEKAKAEKLIEELEKASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGV 654
Query: 154 TESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKK----DAHVVY 209
+ + + L W+ EL + +++ A LE ++GG+++ +K A +VY
Sbjct: 655 FDGTIENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVY 714
Query: 210 RGDGSKSSVKMCPRS 224
RG K K+ P++
Sbjct: 715 RGKNYKRPSKLRPKT 729
>gi|154986387|gb|ABS89147.1| CFM2 alternative polyadenylation form 2 [Zea mays]
Length = 783
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 177/398 (44%), Positives = 243/398 (61%), Gaps = 35/398 (8%)
Query: 290 EGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLR 349
E D+LLDGLGPRF WW + P+PVD DLLP +VPG++ PFRL P KLTD E+T LR
Sbjct: 376 EADKLLDGLGPRFSGWWGYDPVPVDADLLPAIVPGYRRPFRLLPSGVPPKLTDREMTILR 435
Query: 350 KLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLA 409
+LAH LP H+ LGR+ LQGLA +++KLWE+ VAKI +K NTD+E + E+K
Sbjct: 436 RLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTDSELITEEVK---- 491
Query: 410 KWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQ 469
LTGG LL R+K I+ YRGKDFLP V +L +E+ R+L
Sbjct: 492 -----------------ELTGGTLLSRDKESIVFYRGKDFLPPAV-SLAIEKRRKLGSST 533
Query: 470 NHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQN----IQSDFGDLKMGNREFELQLE- 524
++ A+ E+ ++ + K S ++ + ++ G L ++ E +L
Sbjct: 534 IYK--AKPGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAGSLNTVAKDVETRLSQ 591
Query: 525 --AEIEDLERELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGV 582
AE E+ + + E+ L + E I+E+ER L K+G+K+ LLLGRRGVFDG
Sbjct: 592 AIAEKAKAEKLIEELEKASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGVFDGT 651
Query: 583 IEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKN 642
IE +H HWKYRE+ ++I K+ V Y A++L AESGGIL++V+K+ +GHAII+YRGKN
Sbjct: 652 IENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKN 711
Query: 643 YRRPLKLMTQNLLSKRQALRRSLEMQR----LGSLKFF 676
Y+RP KL + LLSKR AL+RSLE QR L SL F+
Sbjct: 712 YKRPSKLRPKTLLSKRDALKRSLENQRCKVWLISLNFY 749
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 52/91 (57%)
Query: 121 TKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLC 180
+ AE L + L RL+ ++RK +KV KAG+TE +V I WR E+ ++ +
Sbjct: 130 SAAELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWA 189
Query: 181 RNMDRAREILELKTGGLVIWTKKDAHVVYRG 211
NM R EILE KTGGLVIW ++YRG
Sbjct: 190 MNMRRTHEILERKTGGLVIWRSGSTIILYRG 220
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 555 EERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKS 614
+E + L IG+++ L +G+ G+ +G++ G+H+ W+ EV ++ + + T +
Sbjct: 139 DELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEI 198
Query: 615 LVAESGGILISVDKLKEGHAIIIYRGKNYRRP 646
L ++GG++I + G II+YRG NY P
Sbjct: 199 LERKTGGLVI----WRSGSTIILYRGTNYTYP 226
Score = 39.3 bits (90), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 65/135 (48%), Gaps = 15/135 (11%)
Query: 105 REDRFVFRRMKKERMVT---KAETMLDGELLERLKDEAR--------KMRKWVKVKKAGV 153
R + + + K E+++ KA + E+ E + ++ R KM++++ + + GV
Sbjct: 588 RLSQAIAEKAKAEKLIEELEKASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGV 647
Query: 154 TESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKK----DAHVVY 209
+ + + L W+ EL + +++ A LE ++GG+++ +K A +VY
Sbjct: 648 FDGTIENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVY 707
Query: 210 RGDGSKSSVKMCPRS 224
RG K K+ P++
Sbjct: 708 RGKNYKRPSKLRPKT 722
>gi|326497411|dbj|BAK05795.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1070
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 177/401 (44%), Positives = 239/401 (59%), Gaps = 40/401 (9%)
Query: 289 REGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYL 348
+E D+LLDGLGPRF +WW + PLPVD DLLP +VPGF+ PFRL P KLTD E+T L
Sbjct: 401 KEDDKLLDGLGPRFSEWWGYDPLPVDADLLPAIVPGFRRPFRLLPSGVPPKLTDREMTIL 460
Query: 349 RKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASL 408
R+LA PLP H+ LGR+ LQGLA +I+KLWE+ VAKI +K G D+E ++ ELK
Sbjct: 461 RRLARPLPYHYALGRSSNLQGLAASIIKLWERCEVAKIAMKRGPYCIDSELVSEELKG-- 518
Query: 409 AKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERER----- 463
LTGG LL R+ I+LYRGKDFLP V +L +E+ R
Sbjct: 519 -------------------LTGGTLLSRDNESIVLYRGKDFLPQAV-SLAIEKRRKHDNS 558
Query: 464 -------ELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGN 516
E++ ++ + LK + E ++SE++ + M
Sbjct: 559 MINKPKPEIEESIPTQDASELKIANDASVHGH--ECHEGETSVSEYRTESLNTVAQNMET 616
Query: 517 REFELQLEAE-IEDLERELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGR 575
R + E E E L EL K R E E+I+EEER L K+G+++ LLLGR
Sbjct: 617 RLSQALTEKEKAEKLLEELEKASRSSKAETR---EVISEEERYMLRKVGLQMKPFLLLGR 673
Query: 576 RGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAI 635
RGVFDG IE +H HWKYRE+ ++I K+ V Y A++L AESGGIL++V+++ +GHAI
Sbjct: 674 RGVFDGTIENMHLHWKYRELVKIICKEHSMEDVTYAARTLEAESGGILVAVERVSKGHAI 733
Query: 636 IIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKFF 676
I+YRGKNY+RP L ++LL+K+ AL+RS+E+QR SLK
Sbjct: 734 IMYRGKNYQRPSSLRPKSLLNKKDALKRSVELQRRKSLKLH 774
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 50/92 (54%)
Query: 124 ETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNM 183
E L + L RL+ ++RK +KV K GVTE +V I WR EL ++ D NM
Sbjct: 139 ELTLPRDELRRLQGVGIRLRKRLKVGKPGVTEGIVNGIHERWRNAELVKIRCDDISAMNM 198
Query: 184 DRAREILELKTGGLVIWTKKDAHVVYRGDGSK 215
R E+LE KTGGLVIW ++YRG K
Sbjct: 199 RRTHEVLERKTGGLVIWRSGSTIILYRGTNYK 230
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 560 LHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAES 619
L +G+++ L +G+ GV +G++ G+H+ W+ E+ ++ + T + L ++
Sbjct: 150 LQGVGIRLRKRLKVGKPGVTEGIVNGIHERWRNAELVKIRCDDISAMNMRRTHEVLERKT 209
Query: 620 GGILISVDKLKEGHAIIIYRGKNYRRP 646
GG++I + G II+YRG NY+ P
Sbjct: 210 GGLVI----WRSGSTIILYRGTNYKYP 232
>gi|357167767|ref|XP_003581323.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 1053
Score = 305 bits (780), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 176/394 (44%), Positives = 238/394 (60%), Gaps = 34/394 (8%)
Query: 290 EGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLR 349
EGD+LLDGLGPRF WW + PLPVD DLLP +VPGF+ PFRL P SKLTD E+T LR
Sbjct: 392 EGDKLLDGLGPRFSGWWGYDPLPVDADLLPAIVPGFRRPFRLLPSGVPSKLTDREMTILR 451
Query: 350 KLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLA 409
+LA PLP H+ LGR+ LQGLA +++KLWE+ VAKI +K G D+E ++ ELK
Sbjct: 452 RLARPLPYHYALGRSSNLQGLAVSMIKLWERCEVAKIAIKRGAYCIDSELVSEELKG--- 508
Query: 410 KWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQ 469
LTGG LL R+ I+ YRGKDFL V +L +E+ R+
Sbjct: 509 ------------------LTGGTLLSRDNKSIVFYRGKDFLSPAV-SLAIEKRRK----H 545
Query: 470 NHEEGARLK--AIETFHLPDEP-LEKTSKAGTLSEFQNIQSDFGDLKMG----NREFEL- 521
++ +LK E+ D L+ TS A + + + G+ + N E L
Sbjct: 546 SNSTTGKLKPETEESTSTQDASELKMTSDASVNGHECHEEKNEGETSLNTVAQNVEIRLS 605
Query: 522 QLEAEIEDLERELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDG 581
Q E E E+ L + E+ + E I++EER L KIG+++ LLLGRRGVFDG
Sbjct: 606 QAIVEKEKAEKLLEELEKASQPSKAETREHISDEERYMLRKIGLQMKPFLLLGRRGVFDG 665
Query: 582 VIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGK 641
IE +H HWKYRE+ ++I K+ V Y A++L ++SGGIL++V+++ +GHAII+YRGK
Sbjct: 666 TIENMHLHWKYRELVKIICKEHSMKDVEYAARTLESQSGGILVAVERVSKGHAIIMYRGK 725
Query: 642 NYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKF 675
NY RP L ++LL+KR AL+RS+E QR SLK
Sbjct: 726 NYHRPSTLRPKSLLNKRDALKRSVEYQRQKSLKL 759
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 52/95 (54%)
Query: 121 TKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLC 180
+ AE L + L RL+ ++RK +KV K GVTE +V I WR EL ++ D
Sbjct: 134 SAAELTLPRDELRRLQGVGIRLRKRLKVGKPGVTEGIVNGIHERWRNVELVKIRCDDVSA 193
Query: 181 RNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSK 215
NM R EILE KTGGLVIW ++YRG K
Sbjct: 194 MNMRRTHEILERKTGGLVIWRSGSTIILYRGTNYK 228
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 560 LHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAES 619
L +G+++ L +G+ GV +G++ G+H+ W+ E+ ++ + T + L ++
Sbjct: 148 LQGVGIRLRKRLKVGKPGVTEGIVNGIHERWRNVELVKIRCDDVSAMNMRRTHEILERKT 207
Query: 620 GGILISVDKLKEGHAIIIYRGKNYRRP 646
GG++I + G II+YRG NY+ P
Sbjct: 208 GGLVI----WRSGSTIILYRGTNYKYP 230
>gi|302768979|ref|XP_002967909.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
gi|300164647|gb|EFJ31256.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
Length = 557
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 212/570 (37%), Positives = 293/570 (51%), Gaps = 66/570 (11%)
Query: 123 AETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRN 182
AE +L L RL+ ++ +KVKK G+T +VV I WR +E+ +K D + N
Sbjct: 29 AELVLPDAELRRLRTMIIHTKERIKVKKLGITRNVVQAIHQKWRTSEIVKLKCDQEVAMN 88
Query: 183 MDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTHLHLEK 242
M + E LE +TGGLVIW A V+YRG D P K + E
Sbjct: 89 MRKVHEELEKRTGGLVIWRAGTALVIYRGK--------------DYAGP-PKERWIPTE- 132
Query: 243 KVNVSWIKSNTATLDQNRSLKDGEENSLPTSI--FMDKNLRIDKSLYEREGDRLLDGLGP 300
S K + +S GE + T F++ ++ ++ YE + DRLL LGP
Sbjct: 133 ----SVSKPKESVEKPEKSHVSGELLGIDTQFKEFVN-HIPFIEAEYEMQMDRLLAELGP 187
Query: 301 RFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFV 360
R+ DW +P+PVDGD LP + FK P+RL P KL+D E T L +LA +P FV
Sbjct: 188 RYADWKGDRPVPVDGDKLPAIDHNFKSPYRLLPYGMEPKLSDKEFTNLVRLARQMPPQFV 247
Query: 361 LGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDD 420
+ RN+GLQGLA A++KLWEK+ + K+ +K + +TDN +MA+ELK
Sbjct: 248 ISRNKGLQGLAKAMVKLWEKTEITKVAIKQSVQSTDNAKMADELK--------------- 292
Query: 421 GVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGARL--- 477
LTG VLL R K +I YRGKDFLP + ERE ++ E+ AR+
Sbjct: 293 ------RLTGCVLLGREKTHMIFYRGKDFLPAPIAAAFEEREAMSFANKDVEDKARMLPT 346
Query: 478 -KAIETF-HLPDEPLEKTSKAGTLSEFQN---------IQSDFGDLKMGNREFELQLEAE 526
K E H+ P E + +N + + E L + +
Sbjct: 347 GKVTEKIVHVEQRPQETEADIKLKEWIKNQEEEKRRAIVMKAARAARARRIERRLDIVSS 406
Query: 527 I-----EDLERELRKQERKLLLEQDP--DLEMITEEERQCLHKIGMKINSNLLLGRRGVF 579
E E L K E KL+ ++P D E ITEEER L ++G+K+ + LLLGRRGV+
Sbjct: 407 FAIRKKEKAEEALSKVE-KLMKPREPSEDRETITEEERYTLQRVGLKMKAFLLLGRRGVY 465
Query: 580 DGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYR 639
G+IE +H HWKYRE+ +V+ K K + TAK + ESGGILI + + +G + YR
Sbjct: 466 SGIIENMHLHWKYRELVKVVYKGKDRMDIEDTAKMIECESGGILIGIYPVSKGQVFLYYR 525
Query: 640 GKNYRRPLKLMTQNLLSKRQALRRSLEMQR 669
GKNYRRP +L NLL+KR+AL R E QR
Sbjct: 526 GKNYRRPEELRPHNLLTKRKALARYTETQR 555
Score = 47.4 bits (111), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 10/137 (7%)
Query: 577 GVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAII 636
G+ V++ +HQ W+ E+ ++ Q++ + + L +GG++I + G A++
Sbjct: 58 GITRNVVQAIHQKWRTSEIVKLKCDQEVAMNMRKVHEELEKRTGGLVI----WRAGTALV 113
Query: 637 IYRGKNYRRPLK---LMTQNLLSKRQALRRSLEMQRLGSLKFF--RIPETAGHLQFENQT 691
IYRGK+Y P K + T+++ ++++ + + G L + E H+ F
Sbjct: 114 IYRGKDYAGPPKERWIPTESVSKPKESVEKPEKSHVSGELLGIDTQFKEFVNHIPFIEAE 173
Query: 692 YLPKKAKLLAHL-PLYC 707
Y + +LLA L P Y
Sbjct: 174 YEMQMDRLLAELGPRYA 190
>gi|302761182|ref|XP_002964013.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
gi|300167742|gb|EFJ34346.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
Length = 555
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 209/566 (36%), Positives = 294/566 (51%), Gaps = 61/566 (10%)
Query: 123 AETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRN 182
AE +L L RL+ ++ +KVKK G+T +VV I WR +E+ +K D + N
Sbjct: 30 AELVLPDAELRRLRTMIIHTKERIKVKKLGITRNVVQAIHQKWRTSEIVKLKCDQEVAMN 89
Query: 183 MDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTHLHLEK 242
M + E LE +TGGLVIW A V+YRG D P K + E
Sbjct: 90 MRKVHEELEKRTGGLVIWRAGAALVIYRGK--------------DYAGP-PKERWIPTE- 133
Query: 243 KVNVSWIKSNTATLDQNRSLKDGEENSLPTSI--FMDKNLRIDKSLYEREGDRLLDGLGP 300
S K + +S GE + T F++ ++ ++ YE + DRLL LGP
Sbjct: 134 ----SVSKPKESVEKPEKSHVSGELLGIDTQFKEFVN-HIPFIEAEYEMQMDRLLAELGP 188
Query: 301 RFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFV 360
R+ DW +P+PVDGD LP + FK P+RL P KL+D E T L +LA +P FV
Sbjct: 189 RYADWKGDRPVPVDGDKLPAIDHNFKSPYRLLPYGMEPKLSDREFTNLVRLARQMPPQFV 248
Query: 361 LGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDD 420
+ RN+GLQGLA A++KLWEK+ + K+ +K + +TDN +MA+ELK
Sbjct: 249 ISRNKGLQGLAKAMVKLWEKTEITKVAIKQSVQSTDNAKMADELK--------------- 293
Query: 421 GVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGARL--- 477
LTG VLL R K +I YRGKDFLP + ERE ++ E+ AR+
Sbjct: 294 ------RLTGCVLLGREKTHMIFYRGKDFLPAPIAAAFEEREAMSFANKDVEDKARMLPT 347
Query: 478 -KAIETF-HLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLERELR 535
K E H+ P E + +N + + + + L+ +R
Sbjct: 348 GKVTEKIVHVEQRPQETEADIKLKEWIKNQEEEKRRAIVMKAARAARARRIERRLDIAVR 407
Query: 536 KQER---------KLLLEQDP--DLEMITEEERQCLHKIGMKINSNLLL-GRRGVFDGVI 583
K+E+ KL+ ++P D E ITEEER L ++G+K+ + LLL GRRGV+ G+I
Sbjct: 408 KKEKAEEALSKVEKLMKPREPSEDRETITEEERYTLQRVGLKMKAFLLLAGRRGVYSGII 467
Query: 584 EGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
E +H HWKYRE+ +V+ K K + TAK + ESGGILI + + +G + YRGKNY
Sbjct: 468 ENMHLHWKYRELVKVVYKGKDRMDIEDTAKMIECESGGILIGIYPVSKGQVFLYYRGKNY 527
Query: 644 RRPLKLMTQNLLSKRQALRRSLEMQR 669
RRP +L NLL+KR+AL R E QR
Sbjct: 528 RRPEELRPHNLLTKRKALARYTETQR 553
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 67/137 (48%), Gaps = 10/137 (7%)
Query: 577 GVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAII 636
G+ V++ +HQ W+ E+ ++ Q++ + + L +GG++I + G A++
Sbjct: 59 GITRNVVQAIHQKWRTSEIVKLKCDQEVAMNMRKVHEELEKRTGGLVI----WRAGAALV 114
Query: 637 IYRGKNYRRPLK---LMTQNLLSKRQALRRSLEMQRLGSLKFF--RIPETAGHLQFENQT 691
IYRGK+Y P K + T+++ ++++ + + G L + E H+ F
Sbjct: 115 IYRGKDYAGPPKERWIPTESVSKPKESVEKPEKSHVSGELLGIDTQFKEFVNHIPFIEAE 174
Query: 692 YLPKKAKLLAHL-PLYC 707
Y + +LLA L P Y
Sbjct: 175 YEMQMDRLLAELGPRYA 191
>gi|297803062|ref|XP_002869415.1| hypothetical protein ARALYDRAFT_328739 [Arabidopsis lyrata subsp.
lyrata]
gi|297315251|gb|EFH45674.1| hypothetical protein ARALYDRAFT_328739 [Arabidopsis lyrata subsp.
lyrata]
Length = 775
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 208/581 (35%), Positives = 295/581 (50%), Gaps = 111/581 (19%)
Query: 120 VTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPL 179
+AE ++ L RL+ A +M + VKV AG+T+ +V I W +E+ +KF
Sbjct: 233 TAEAERVVPEHELRRLRSVALRMVERVKVGSAGITQVLVQAIHEKWEVDEVVKLKF---- 288
Query: 180 CRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTHLH 239
G S+ M K TH
Sbjct: 289 ---------------------------------GEPFSLNM-------------KRTHEV 302
Query: 240 LEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLG 299
LE +N +++ + +P KN+ ++ E + LLD LG
Sbjct: 303 LENNLNTKHVEAR---------------DYVPEDANYPKNVPKEQLSELCELNDLLDELG 347
Query: 300 PRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHF 359
PRF DW P PVD DLLP V G++ PFR+ P + L++ E+T +R+LA P HF
Sbjct: 348 PRFHDWTGCAPFPVDADLLPGYVEGYRCPFRILPQGVKPCLSNTEMTEMRRLARTSPPHF 407
Query: 360 VLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSD 419
LGR+R LQGLA A++KLW KS +AKI +K G+ NT NE+MA ELK
Sbjct: 408 ALGRSRELQGLAKAMVKLWAKSAIAKIAIKRGVENTRNERMAEELK-------------- 453
Query: 420 DGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVEREREL-QICQNHEEGARLK 478
LT GVL+ RNK I+ YRG DF+P V + ER++E+ ++ Q E+ R
Sbjct: 454 -------RLTRGVLVSRNKEYIVFYRGNDFMPPAVAEALTERQKEITEVLQTKEDQVREM 506
Query: 479 AIETFHLPDEPLEKTSK--AGTLSEFQNIQSDFG------DLKMGNRE-FELQLEAEIED 529
A L + ++ AGTL+E S + D++ RE ++ A I D
Sbjct: 507 ASTRVTLTSQAKSPKTQLLAGTLAETIAASSRWAPDASSVDIEELKRESASIKRAALIRD 566
Query: 530 LE-------RELRKQERKLLLEQ---DP-----DLEMITEEERQCLHKIGMKINSNLLLG 574
LE ++LR+ ER L Q DP D E ITEEER KIG+ ++ LLLG
Sbjct: 567 LELRLLYGKQKLRRAERDLAKVQKDLDPSELPTDSETITEEERLLYRKIGLSMDPFLLLG 626
Query: 575 RRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHA 634
RR V+DG IE +H HWK+RE+ +VI + K QV + A SL AESGG+L+SVDK +G++
Sbjct: 627 RREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKGYS 686
Query: 635 IIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKF 675
II+YRGKNY+ P +L NLL++++A RS+E+QR +LK+
Sbjct: 687 IILYRGKNYQMPFRLRPSNLLTRKKAFARSIELQRREALKY 727
>gi|297602873|ref|NP_001053020.2| Os04g0464800 [Oryza sativa Japonica Group]
gi|255675534|dbj|BAF14934.2| Os04g0464800 [Oryza sativa Japonica Group]
Length = 1042
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 210/630 (33%), Positives = 296/630 (46%), Gaps = 158/630 (25%)
Query: 132 LERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILE 191
L RL+ ++R +KV KAGVTE +V I WR EL ++ D NM R EILE
Sbjct: 146 LRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILE 205
Query: 192 LKTGGLVIWTKKDAHVVYRG---------------DGSKSSVKMCPRSADDQEAPLS--- 233
KTGGLVIW ++YRG D +SS S+DD++A L+
Sbjct: 206 RKTGGLVIWRSGSTIILYRGTDYKYPYFHDREMKNDMDESSEHT---SSDDEDADLAIIA 262
Query: 234 ----------------KSTHLH----LEKKVNVSWIKSN-----------TATLDQNRSL 262
S H L ++ V ++ N +AT DQ L
Sbjct: 263 SEQSGSEEDSDNPAEHGSNHTEEGDDLTRRFGVDALEGNLDIGSAEQSINSATKDQQAIL 322
Query: 263 KDGEENSLPTSIFMDKNLRIDKSL---------------YEREGDRLLDGLGPRFVDWWM 307
S P+ I + + E D+LLDGLGPRF DWW
Sbjct: 323 HTSTNVSRPSEISGRARSTLVAGVGSPNKFRLQLPGEVKLAEEADKLLDGLGPRFSDWWG 382
Query: 308 WKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGL 367
+ PLPVD DLLP +VPG++ R+ L
Sbjct: 383 YDPLPVDADLLPAIVPGYR------------------------------------RSSNL 406
Query: 368 QGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQH 427
QGLA +++KLWE+ VAK+ +K G N D++ ++ +LK
Sbjct: 407 QGLAASMIKLWERCEVAKVAIKRGAENIDSDLISEKLKG--------------------- 445
Query: 428 LTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQIC-----------QNHEEGAR 476
LTGG LL R+ I+ YRGKDFLP V +L +E+ R+ + ++
Sbjct: 446 LTGGTLLSRDNESIVFYRGKDFLPTAV-SLAIEKRRKYGNSTISNPKLNFDKSTPQNSSK 504
Query: 477 LKAIETFHLP----------DEPLEKTSKAGTLSEF-QNIQSDFGDLKMGNREFELQLEA 525
LK L DE ++A +L+ F QN+++ + +E +L
Sbjct: 505 LKMATDVSLDGHECYEKKHKDETAVSDNRAESLNVFAQNVEARLSQ-AIAEKEKTEKLIE 563
Query: 526 EIEDLERELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEG 585
E+E R + R E+I+EEER L K+G+K+ S LLLGRRGVFDG +E
Sbjct: 564 ELEMSSEPSRAETR----------EVISEEERYMLRKVGLKMKSFLLLGRRGVFDGTVEN 613
Query: 586 LHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRR 645
+H HWKYRE+ ++I K+ V Y A++L AESGGIL++V+++ + HAIIIYRGKNY+R
Sbjct: 614 MHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSKAHAIIIYRGKNYQR 673
Query: 646 PLKLMTQNLLSKRQALRRSLEMQRLGSLKF 675
P L ++LL+K+ AL+RS+E QR SLK
Sbjct: 674 PSTLRPKSLLNKKDALKRSVEYQRYKSLKL 703
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 555 EERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKS 614
+E + L G+++ + L +G+ GV +G++ G+H+ W+ E+ ++ + T +
Sbjct: 144 DELRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEI 203
Query: 615 LVAESGGILISVDKLKEGHAIIIYRGKNYRRP 646
L ++GG++I + G II+YRG +Y+ P
Sbjct: 204 LERKTGGLVI----WRSGSTIILYRGTDYKYP 231
>gi|21741981|emb|CAD41031.1| OSJNBa0060P14.12 [Oryza sativa Japonica Group]
gi|32492164|emb|CAE04823.1| OSJNBb0048E02.3 [Oryza sativa Japonica Group]
Length = 1012
Score = 290 bits (743), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 210/630 (33%), Positives = 296/630 (46%), Gaps = 158/630 (25%)
Query: 132 LERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILE 191
L RL+ ++R +KV KAGVTE +V I WR EL ++ D NM R EILE
Sbjct: 146 LRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILE 205
Query: 192 LKTGGLVIWTKKDAHVVYRG---------------DGSKSSVKMCPRSADDQEAPLS--- 233
KTGGLVIW ++YRG D +SS S+DD++A L+
Sbjct: 206 RKTGGLVIWRSGSTIILYRGTDYKYPYFHDREMKNDMDESSEHT---SSDDEDADLAIIA 262
Query: 234 ----------------KSTHLH----LEKKVNVSWIKSN-----------TATLDQNRSL 262
S H L ++ V ++ N +AT DQ L
Sbjct: 263 SEQSGSEEDSDNPAEHGSNHTEEGDDLTRRFGVDALEGNLDIGSAEQSINSATKDQQAIL 322
Query: 263 KDGEENSLPTSIFMDKNLRIDKSL---------------YEREGDRLLDGLGPRFVDWWM 307
S P+ I + + E D+LLDGLGPRF DWW
Sbjct: 323 HTSTNVSRPSEISGRARSTLVAGVGSPNKFRLQLPGEVKLAEEADKLLDGLGPRFSDWWG 382
Query: 308 WKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGL 367
+ PLPVD DLLP +VPG++ R+ L
Sbjct: 383 YDPLPVDADLLPAIVPGYR------------------------------------RSSNL 406
Query: 368 QGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQH 427
QGLA +++KLWE+ VAK+ +K G N D++ ++ +LK
Sbjct: 407 QGLAASMIKLWERCEVAKVAIKRGAENIDSDLISEKLKG--------------------- 445
Query: 428 LTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQIC-----------QNHEEGAR 476
LTGG LL R+ I+ YRGKDFLP V +L +E+ R+ + ++
Sbjct: 446 LTGGTLLSRDNESIVFYRGKDFLPTAV-SLAIEKRRKYGNSTISNPKLNFDKSTPQNSSK 504
Query: 477 LKAIETFHLP----------DEPLEKTSKAGTLSEF-QNIQSDFGDLKMGNREFELQLEA 525
LK L DE ++A +L+ F QN+++ + +E +L
Sbjct: 505 LKMATDVSLDGHECYEKKHKDETAVSDNRAESLNVFAQNVEARLSQ-AIAEKEKTEKLIE 563
Query: 526 EIEDLERELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEG 585
E+E R + R E+I+EEER L K+G+K+ S LLLGRRGVFDG +E
Sbjct: 564 ELEMSSEPSRAETR----------EVISEEERYMLRKVGLKMKSFLLLGRRGVFDGTVEN 613
Query: 586 LHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRR 645
+H HWKYRE+ ++I K+ V Y A++L AESGGIL++V+++ + HAIIIYRGKNY+R
Sbjct: 614 MHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSKAHAIIIYRGKNYQR 673
Query: 646 PLKLMTQNLLSKRQALRRSLEMQRLGSLKF 675
P L ++LL+K+ AL+RS+E QR SLK
Sbjct: 674 PSTLRPKSLLNKKDALKRSVEYQRYKSLKL 703
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 555 EERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKS 614
+E + L G+++ + L +G+ GV +G++ G+H+ W+ E+ ++ + T +
Sbjct: 144 DELRRLQGAGIRLRNRLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEI 203
Query: 615 LVAESGGILISVDKLKEGHAIIIYRGKNYRRP 646
L ++GG++I + G II+YRG +Y+ P
Sbjct: 204 LERKTGGLVI----WRSGSTIILYRGTDYKYP 231
>gi|5123569|emb|CAB45335.1| putative protein [Arabidopsis thaliana]
gi|7269874|emb|CAB79733.1| putative protein [Arabidopsis thaliana]
Length = 776
Score = 278 bits (711), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 173/407 (42%), Positives = 237/407 (58%), Gaps = 54/407 (13%)
Query: 294 LLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAH 353
LLD +GPRF DW P PVD DLLP V G++ PFR+ P + L++ E+T +R+LA
Sbjct: 351 LLDEVGPRFHDWTGCAPFPVDADLLPGYVEGYRCPFRILPQGVKPCLSNTEMTEMRRLAR 410
Query: 354 PLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKP 413
P HF LGR+R LQGLA A++KLW KS +AKI +K G+ NT NE+MA ELK
Sbjct: 411 TSPPHFALGRSRELQGLAKAMVKLWAKSAIAKIAIKRGVENTRNERMAEELK-------- 462
Query: 414 NFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVEREREL-QICQNHE 472
LT GVL+ RNK I+ YR V + ER++E+ ++ Q E
Sbjct: 463 -------------RLTRGVLVSRNKEYIVFYR--------VAEALTERQKEITEVLQAKE 501
Query: 473 EGARLKAIETFHLPDEPLEKTSK--AGTLSEFQNIQSDFG------DLKMGNRE-FELQL 523
+ AR A L + ++ AGTL+E S + D++ RE ++
Sbjct: 502 DQAREMASTRATLTSQAKSPKTQLLAGTLAETIAASSRWAPNASSVDIEELKRESASIKR 561
Query: 524 EAEIEDLE-------RELRKQERKLLLEQ---DP-----DLEMITEEERQCLHKIGMKIN 568
A I DLE ++LR+ ER L Q DP D E+ITEEER KIG+ ++
Sbjct: 562 AALIRDLELRLLYGKQKLRRAERDLAKVQKDLDPSELPTDSEIITEEERLLYRKIGLSMD 621
Query: 569 SNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDK 628
LLLGRR V+DG IE +H HWK+RE+ +VI + K QV + A SL AESGG+L+SVDK
Sbjct: 622 PFLLLGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDK 681
Query: 629 LKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKF 675
+G+AII+YRGKNY+ P +L NLL++++A RS+E+QR +LK+
Sbjct: 682 TMKGYAIILYRGKNYQMPFRLRPSNLLTRKKAFARSIELQRREALKY 728
Score = 48.1 bits (113), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 113 RMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAM 172
R +K V +AE ++ L+RL++ A +M + VKV AG+T+++V I W +E+
Sbjct: 231 RTRKSNTV-EAERIVPEHELKRLRNVALRMVERVKVGSAGITQALVEAIHEKWEVDEVVK 289
Query: 173 VKFDVPLCRNMDRAREILE 191
+KF P NM R E+LE
Sbjct: 290 LKFSEPYSLNMKRTHEVLE 308
>gi|414870651|tpg|DAA49208.1| TPA: chloroplast RNA splicing1 [Zea mays]
Length = 496
Score = 278 bits (711), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 184/415 (44%), Positives = 224/415 (53%), Gaps = 43/415 (10%)
Query: 18 IIKPSKPKTKKSFKKTDKGLTAKESGVRGKQAMKKIIENIEKLQKDQILDETQKKVMEKF 77
I P +K+ K K LTA G R +A+ II + L+
Sbjct: 50 IDSPKPAPARKNTKTAAKPLTAGVPGGRTHRAVLGIIRRVRSLELSDAPSPNSVHTSNSG 109
Query: 78 EFKGCFE------------ENVSHEEDLRGGFGGKVPWL--RED--RFVFRRMKKERMVT 121
F + V +E R VPW R++ + RR KK R T
Sbjct: 110 AAAAAFHLTIELSPPREPGQYVVEKEKSRA-----VPWAAARDEGLKVALRREKKPREPT 164
Query: 122 KAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNE-LAMVKFDVPLC 180
+AET L+ L RL+ AR + +W + KKAGVT+ VV E+R W E LA V+ PL
Sbjct: 165 RAETELETHELHRLRRLARGIGRWARAKKAGVTDEVVKEVRREWASGEELAAVRIVEPLR 224
Query: 181 RNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKS--THL 238
R+MDRAREILE+KTGGLV+WTK D H VYRG S Q A S + T++
Sbjct: 225 RSMDRAREILEIKTGGLVVWTKGDMHFVYRG------------SKYQQNAKHSHTFLTNV 272
Query: 239 H----LEKKVNVSWIKSNT--ATLDQNRSLKDGEENSLPTSIFMDKNLR-IDKSLYEREG 291
H ++ V+ + +K + L N D SI K+ + +LYERE
Sbjct: 273 HKGYLVKHNVHTTLLKYGSIGPVLINNYGEADDAFQENDQSICGQKDEEPVKGTLYEREV 332
Query: 292 DRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKL 351
+RLLD LGPRFVDWW PLPVD DLLPE VPGFK P+RL PP R L D+ELTYLRKL
Sbjct: 333 NRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGFKTPYRLCPPGVRPTLADEELTYLRKL 392
Query: 352 AHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKA 406
A LPTHF LGRN LQGLA AILKLWEKSL+AKI VK GI NT+NEQMA LK
Sbjct: 393 ARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNLKG 447
>gi|414870653|tpg|DAA49210.1| TPA: chloroplast RNA splicing1 [Zea mays]
Length = 467
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 177/406 (43%), Positives = 220/406 (54%), Gaps = 54/406 (13%)
Query: 18 IIKPSKPKTKKSFKKTDKGLTAKESGVRGKQAMKKIIENIEKLQKDQILDETQKKVMEKF 77
I P +K+ K K LTA G R +A+ II + L+
Sbjct: 50 IDSPKPAPARKNTKTAAKPLTAGVPGGRTHRAVLGIIRRVRSLELSDAPSPNSVHTSNSG 109
Query: 78 EFKGCFE------------ENVSHEEDLRGGFGGKVPWL--RED--RFVFRRMKKERMVT 121
F + V +E R VPW R++ + RR KK R T
Sbjct: 110 AAAAAFHLTIELSPPREPGQYVVEKEKSRA-----VPWAAARDEGLKVALRREKKPREPT 164
Query: 122 KAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNE-LAMVKFDVPLC 180
+AET L+ L RL+ AR + +W + KKAGVT+ VV E+R W E LA V+ PL
Sbjct: 165 RAETELETHELHRLRRLARGIGRWARAKKAGVTDEVVKEVRREWASGEELAAVRIVEPLR 224
Query: 181 RNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTHLHL 240
R+MDRAREILE+KTGGLV+WTK D H VYRG + + +K +H L
Sbjct: 225 RSMDRAREILEIKTGGLVVWTKGDMHFVYRGSKYQQN---------------AKHSHTFL 269
Query: 241 EKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGP 300
+ + A + ++S+ G+++ P + +LYERE +RLLD LGP
Sbjct: 270 TN------VHKDDAFQENDQSI-CGQKDEEP----------VKGTLYEREVNRLLDTLGP 312
Query: 301 RFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFV 360
RFVDWW PLPVD DLLPE VPGFK P+RL PP R L D+ELTYLRKLA LPTHF
Sbjct: 313 RFVDWWWDTPLPVDADLLPEFVPGFKTPYRLCPPGVRPTLADEELTYLRKLARLLPTHFA 372
Query: 361 LGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKA 406
LGRN LQGLA AILKLWEKSL+AKI VK GI NT+NEQMA LK
Sbjct: 373 LGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNLKG 418
>gi|302781424|ref|XP_002972486.1| hypothetical protein SELMODRAFT_412905 [Selaginella moellendorffii]
gi|300159953|gb|EFJ26572.1| hypothetical protein SELMODRAFT_412905 [Selaginella moellendorffii]
Length = 795
Score = 268 bits (686), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 214/604 (35%), Positives = 302/604 (50%), Gaps = 87/604 (14%)
Query: 50 MKKIIENIEKLQKDQILDETQKKVMEKFEFKGCFEENVSHEEDLRGGFGGKVPWLREDR- 108
M I+E + +++ Q T V+ F E+ S E G PW RE
Sbjct: 133 MLNIVEKLRAIERKQRSYSTH--VVPPDTTAAPFSESSSLEGRDSTSQQGSFPWQRESSS 190
Query: 109 ---FVFRRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAW 165
R + ++ AE + L RL+ A ++ +KV GVT++VV +I W
Sbjct: 191 EAPTPVTRPQPPKLPCLAELTIPELELRRLQRIAIRVVNPIKVGYLGVTKAVVQDIHRRW 250
Query: 166 RRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSA 225
++ E+ ++ +M+ W ++ H+ YRG G R
Sbjct: 251 QKCEVVKIQPKNWWLSSMEN--------------W--RNGHL-YRGKG------YFARVD 287
Query: 226 DDQEAPLSKSTHLHLEKKVNV-SWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDK 284
+ A L K + +K+N+ IK D++ S + E + ++ +D
Sbjct: 288 NSMVANLKK----YQRRKINLMEAIKIRDEDEDRDYSQSEHGEARRDSEKGNIEDEYLD- 342
Query: 285 SLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDE 344
E D LL+ LGPR+ DW KP+PVDGDLLP VPG+KPP R+ P A+ L++ E
Sbjct: 343 -----EIDALLEELGPRYDDWIGRKPVPVDGDLLPASVPGYKPPLRMLPYRAKKNLSNME 397
Query: 345 LTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANEL 404
LT LR+L PLP HFVLGRNRGLQGLA+AILKLW+KS + KI +K G+ NT N+ MA EL
Sbjct: 398 LTVLRRLVKPLPPHFVLGRNRGLQGLASAILKLWQKSELVKIGLKRGVQNTRNQLMAEEL 457
Query: 405 KASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERE 464
+ LTGGVLL R+KF I LYRGKDFLP V ++ ERE
Sbjct: 458 ---------------------ERLTGGVLLSRDKFFITLYRGKDFLPTSVAAVLRERESN 496
Query: 465 LQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNI------QSDFGDLKMG--- 515
++ E+ R+ A + D T +G+LSE + Q D +M
Sbjct: 497 MRELLLKEDQVRIPA----QIGDGQNRTTPVSGSLSESMEMRRQWEAQRSEKDDEMDRNS 552
Query: 516 ---------NREFELQLEAEIEDLER---ELRKQERKLLLEQDP-DLEMITEEERQCLHK 562
+ E +L A I R ++ K ER LLL + P D E ITEEER K
Sbjct: 553 AVVALKVREQKRLEAKLAAAISKKRRADLQIVKLERSLLLSEHPRDRETITEEERYMFKK 612
Query: 563 IGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGI 622
+G+++++ LL+GRRGVFDGVIE +H HWK+RE+ ++I K+K A + AK L ESGGI
Sbjct: 613 LGLRMDAFLLIGRRGVFDGVIENMHLHWKHRELVKLILKEKDKAIALEVAKMLEIESGGI 672
Query: 623 LISV 626
L+ V
Sbjct: 673 LVGV 676
>gi|218194999|gb|EEC77426.1| hypothetical protein OsI_16218 [Oryza sativa Indica Group]
Length = 818
Score = 262 bits (669), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 191/580 (32%), Positives = 270/580 (46%), Gaps = 158/580 (27%)
Query: 182 NMDRAREILELKTGGLVIWTKKDAHVVYRG---------------DGSKSSVKMCPRSAD 226
NM R EILE KTGGLVIW ++YRG D +SS S+D
Sbjct: 2 NMKRTHEILERKTGGLVIWRSGSTIILYRGTDYKYPYFHDREMKNDMDESSEHT---SSD 58
Query: 227 DQEAPLS-------------------KSTHLH----LEKKVNVSWIKSN----------- 252
D++A L+ S H L ++ V ++ N
Sbjct: 59 DEDADLAIIASEQSGSEEDSDNPAEHGSNHTEEGDDLTRRFGVDALEGNLDIGSAEQSIN 118
Query: 253 TATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSL---------------YEREGDRLLDG 297
+AT DQ L S P+ I + + E D+LLDG
Sbjct: 119 SATKDQQAILHTSTNVSRPSEISGRARSTLVAGVGSPNKFRLQLPGEVKLAEEADKLLDG 178
Query: 298 LGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPT 357
LGPRF DWW + PLPVD DLLP +VPG++
Sbjct: 179 LGPRFSDWWGYDPLPVDADLLPAIVPGYR------------------------------- 207
Query: 358 HFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKF 417
R+ LQGLA +++KLWE+ VAK+ +K G N D++ ++ +LK
Sbjct: 208 -----RSSNLQGLAASMIKLWERCEVAKVAIKRGAENIDSDLISEKLKG----------- 251
Query: 418 SDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQIC--------- 468
LTGG LL R+ I+ YRGKDFLP V +L +E+ R+
Sbjct: 252 ----------LTGGTLLSRDNESIVFYRGKDFLPTAV-SLAIEKRRKYGNSTISNPKLNF 300
Query: 469 --QNHEEGARLKAIETFHLP----------DEPLEKTSKAGTLSEF-QNIQSDFGDLKMG 515
+ ++LK L DE ++A +L+ F QN+++ +
Sbjct: 301 DKSTPQNSSKLKMATDVSLDGHECYEKKHKDETAVSDNRAESLNVFTQNVEARLSQ-AIA 359
Query: 516 NREFELQLEAEIEDLERELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGR 575
+E +L E+E R + R E+I+EEER L K+G+K+ S LLLGR
Sbjct: 360 EKEKTEKLIEELEMSSEPSRAETR----------EVISEEERYMLRKVGLKMKSFLLLGR 409
Query: 576 RGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAI 635
RGVFDG +E +H HWKYRE+ ++I K+ V Y A++L AESGGIL++V+++ + HAI
Sbjct: 410 RGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSKAHAI 469
Query: 636 IIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKF 675
IIYRGKNY+RP L ++LL+K+ AL+RS+E QR SLK
Sbjct: 470 IIYRGKNYQRPSTLRPKSLLNKKDALKRSVEYQRYKSLKL 509
>gi|125590660|gb|EAZ31010.1| hypothetical protein OsJ_15093 [Oryza sativa Japonica Group]
Length = 818
Score = 262 bits (669), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 191/580 (32%), Positives = 270/580 (46%), Gaps = 158/580 (27%)
Query: 182 NMDRAREILELKTGGLVIWTKKDAHVVYRG---------------DGSKSSVKMCPRSAD 226
NM R EILE KTGGLVIW ++YRG D +SS S+D
Sbjct: 2 NMKRTHEILERKTGGLVIWRSGSTIILYRGTDYKYPYFHDREMKNDMDESSEHT---SSD 58
Query: 227 DQEAPLS-------------------KSTHLH----LEKKVNVSWIKSN----------- 252
D++A L+ S H L ++ V ++ N
Sbjct: 59 DEDADLAIIASEQSGSEEDSDNPAEHGSNHTEEGDDLTRRFGVDALEGNLDIGSAEQSIN 118
Query: 253 TATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSL---------------YEREGDRLLDG 297
+AT DQ L S P+ I + + E D+LLDG
Sbjct: 119 SATKDQQAILHTSTNVSRPSEISGRARSTLVAGVGSPNKFRLQLPGEVKLAEEADKLLDG 178
Query: 298 LGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPT 357
LGPRF DWW + PLPVD DLLP +VPG++
Sbjct: 179 LGPRFSDWWGYDPLPVDADLLPAIVPGYR------------------------------- 207
Query: 358 HFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKF 417
R+ LQGLA +++KLWE+ VAK+ +K G N D++ ++ +LK
Sbjct: 208 -----RSSNLQGLAASMIKLWERCEVAKVAIKRGAENIDSDLISEKLKG----------- 251
Query: 418 SDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQIC--------- 468
LTGG LL R+ I+ YRGKDFLP V +L +E+ R+
Sbjct: 252 ----------LTGGTLLSRDNESIVFYRGKDFLPTAV-SLAIEKRRKYGNSTISNPKLNF 300
Query: 469 --QNHEEGARLKAIETFHLP----------DEPLEKTSKAGTLSEF-QNIQSDFGDLKMG 515
+ ++LK L DE ++A +L+ F QN+++ +
Sbjct: 301 DKSTPQNSSKLKMATDVSLDGHECYEKKHKDETAVSDNRAESLNVFAQNVEARLSQ-AIA 359
Query: 516 NREFELQLEAEIEDLERELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGR 575
+E +L E+E R + R E+I+EEER L K+G+K+ S LLLGR
Sbjct: 360 EKEKTEKLIEELEMSSEPSRAETR----------EVISEEERYMLRKVGLKMKSFLLLGR 409
Query: 576 RGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAI 635
RGVFDG +E +H HWKYRE+ ++I K+ V Y A++L AESGGIL++V+++ + HAI
Sbjct: 410 RGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSKAHAI 469
Query: 636 IIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKF 675
IIYRGKNY+RP L ++LL+K+ AL+RS+E QR SLK
Sbjct: 470 IIYRGKNYQRPSTLRPKSLLNKKDALKRSVEYQRYKSLKL 509
>gi|110742047|dbj|BAE98956.1| hypothetical protein [Arabidopsis thaliana]
Length = 717
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 198/596 (33%), Positives = 290/596 (48%), Gaps = 90/596 (15%)
Query: 49 AMKKIIENIEKLQKDQILDETQKKVMEKFEF--KGCFEENVSHEE----DLRGGF----- 97
M+KI+E KL+K ++E Q K +E+ KG E+ EE + RGGF
Sbjct: 118 TMEKIVE---KLKKYGYMEEVQNKEIEQERRIEKGSVEDIFYVEEGKLPNTRGGFTEESL 174
Query: 98 -GGK----------VPWLREDRFVFRRM------KKERMVTKAETMLDGELLERLKDEAR 140
GG+ PW + + + KKE + AE L L RL++
Sbjct: 175 LGGENVIGSNGDVGFPWEKMSAKEKKELEAEWTAKKENRYSLAEMTLPESELRRLRNLTF 234
Query: 141 KMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIW 200
+ ++++ GVT+ V I+ W+ E+ +K + NM + EILE KTGGLVIW
Sbjct: 235 RTASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIW 294
Query: 201 TKKDAHVVYRGDGSK-SSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQN 259
+ +YRG + S K + ++ H V+ S K + L+Q
Sbjct: 295 RSGTSISLYRGVSYELPSGKWNKQRREETPPEAVIENHDETTTMVDKSDEKVHLPQLEQE 354
Query: 260 RSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLP 319
+ + ++ + P + D+ + L GPRF+DW PLPVD DLLP
Sbjct: 355 TTSVEKKDQTSPVVEYEDELDELLDDL------------GPRFMDWPGDNPLPVDADLLP 402
Query: 320 EVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWE 379
+P ++PPFR+ P RS L E T LR+LA +P HF LGR+R LQGLATA+++LWE
Sbjct: 403 GAIPDYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWE 462
Query: 380 KSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKF 439
KS++AKI +K G+ +T +E+MA +LK LTGG++L RNK
Sbjct: 463 KSMLAKIAIKRGVQSTTSERMAEDLK---------------------KLTGGIMLSRNKD 501
Query: 440 LIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPD-EPLEKTSKAGT 498
++ YRGK+FL V + +VE+ER ++ Q+ EE ARL+ +P EP K AGT
Sbjct: 502 FLVFYRGKNFLSREVADALVEQERFVRTLQDEEEQARLRGSSALIVPSTEPANKLVSAGT 561
Query: 499 LSEFQNIQSDFG-DLKMGNREFELQLEAEI-------EDLERELRKQERKLL-------- 542
L E + +G +L + E++ E EI LER+L ERKLL
Sbjct: 562 LGETLDATGKWGKNLDDDDHSDEVKQEVEILRHENLVRKLERKLAFAERKLLKAERGLAK 621
Query: 543 -------LEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWK 591
EQ D E IT+EER K+G+K+ + LLLG +F + L H+K
Sbjct: 622 VEVCLKPAEQREDPESITDEERFMFRKLGLKMKAFLLLGFAPIFPDICYHL-THYK 676
>gi|9837552|gb|AAG00596.1|AF290415_1 CRS1 [Zea mays]
Length = 267
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/238 (53%), Positives = 152/238 (63%), Gaps = 32/238 (13%)
Query: 169 ELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQ 228
ELA V+ PL R+MDRAREILE+KTGGLV+WTK D H VYRG + +
Sbjct: 13 ELAAVRIVEPLRRSMDRAREILEIKTGGLVVWTKGDMHFVYRGSKYQQN----------- 61
Query: 229 EAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYE 288
+K +H L + + A + ++S+ G+++ P + +LYE
Sbjct: 62 ----AKHSHTFLTN------VHKDDAFQENDQSIC-GQKDEEP----------VKGTLYE 100
Query: 289 REGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYL 348
RE +RLLD LGPRFVDWW PLPVD DLLPE VPGFK P+RL PP R L D+ELTYL
Sbjct: 101 REVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGFKTPYRLCPPGVRPTLADEELTYL 160
Query: 349 RKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKA 406
RKLA LPTHF LGRN LQGLA AILKLWEKSL+AKI VK GI NT+NEQMA LK
Sbjct: 161 RKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNLKG 218
>gi|168014862|ref|XP_001759970.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688720|gb|EDQ75095.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 512
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 172/494 (34%), Positives = 244/494 (49%), Gaps = 86/494 (17%)
Query: 189 ILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSW 248
+L+ TGG+VIW + A V+YRG K V + R D +E K L
Sbjct: 1 LLQRLTGGIVIWREGPAVVIYRG---KDYVPVWMRKMDLREEAYRKRLQL---------- 47
Query: 249 IKSNTATLDQNRSL-KDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWM 307
+ D++R L ++G T++ + E E + L+D LGP+FV W
Sbjct: 48 --LDCDEEDESRQLMEEGTSYDCQTNM-----------IQESEIEDLMDDLGPQFVGWIE 94
Query: 308 WKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGL 367
PVDGDLL V F PFR P R +LT+ E+T +R LA LP HFVLG+ RGL
Sbjct: 95 GGRAPVDGDLL--VNSNFNSPFRRLPYGVRPRLTNFEMTEMRHLAKKLPPHFVLGQCRGL 152
Query: 368 QGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQH 427
+GLA+AI+KLWEKS VAKI +K G+ N++MA+EL
Sbjct: 153 EGLASAIVKLWEKSEVAKIAMKRGVSRIVNDRMASEL---------------------IR 191
Query: 428 LTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPD 487
LTGG L+ RN I LYRG FLP V+ + E++ + EE RL AI
Sbjct: 192 LTGGDLIARNMSYIALYRGNSFLPAIVKGTLKEKDHIARTLLEDEERNRLAAILARKAAR 251
Query: 488 EPLEKTSKAGTLSEFQNIQSDF----GDLKMG-----------NREFELQLEAEIEDL-- 530
+ L + L+ + +F LK G + + +E + +
Sbjct: 252 D-LARQRMQRILNSVSSFSYNFCIHRSSLKFGLFLLSSIFMKISAYMVIDIEIRFKPIRI 310
Query: 531 -----ERELRKQERKLL---LEQDP-DL----EMITEEERQCLHKIGMKINSNLLLGRRG 577
+++ ER+LL L+ P D+ E +TEEE L KIG+++ LLLGRR
Sbjct: 311 GLNVVSQKISSAERELLNLNLKMKPKDMHASKEDVTEEEMYTLRKIGLRMKPYLLLGRRE 370
Query: 578 VFDGVIEGLHQHWKYREVARVITKQKLFA-----QVIYTAKSLVAESGGILISVDKLKEG 632
VF GVIE +H HWK+R++ ++I K+ F + A+ L ESGG+L+ + + G
Sbjct: 371 VFSGVIENMHLHWKWRQLVKIIVKKSYFMYRERDDIENIARMLEIESGGVLVGICTIPVG 430
Query: 633 HAIIIYRGKNYRRP 646
AII+YRGKNY+RP
Sbjct: 431 EAIIVYRGKNYQRP 444
Score = 46.2 bits (108), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 120/264 (45%), Gaps = 34/264 (12%)
Query: 424 LMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERE---RELQICQNHEEGARLKAI 480
L+Q LTGG+++ R +++YRGKD++P + + + E + LQ+ EE
Sbjct: 1 LLQRLTGGIVIWREGPAVVIYRGKDYVPVWMRKMDLREEAYRKRLQLLDCDEED------ 54
Query: 481 ETFHLPDEPLEKTSKAGTL--SEFQNIQSDFGDLKMGNREFELQLEAEIED---LERELR 535
E+ L +E + + SE +++ D G +G E A ++ +
Sbjct: 55 ESRQLMEEGTSYDCQTNMIQESEIEDLMDDLGPQFVGWIEGG---RAPVDGDLLVNSNFN 111
Query: 536 KQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREV 595
R+L P L T E + + K+ + +LG+ +G+ + + W+ EV
Sbjct: 112 SPFRRLPYGVRPRL---TNFEMTEMRHLAKKLPPHFVLGQCRGLEGLASAIVKLWEKSEV 168
Query: 596 ARVITKQKLFAQVI--YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQN 653
A++ K+ + ++++ A L+ +GG LI+ + I +YRG ++ L + +
Sbjct: 169 AKIAMKRGV-SRIVNDRMASELIRLTGGDLIA----RNMSYIALYRGNSF---LPAIVKG 220
Query: 654 LLSKRQALRRSL----EMQRLGSL 673
L ++ + R+L E RL ++
Sbjct: 221 TLKEKDHIARTLLEDEERNRLAAI 244
>gi|147852955|emb|CAN81271.1| hypothetical protein VITISV_006146 [Vitis vinifera]
Length = 1399
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 138/329 (41%), Positives = 178/329 (54%), Gaps = 24/329 (7%)
Query: 96 GFGGKVPWLREDRFVFRRMKK------ERMVTKAETMLDGELLERLKDEARKMRKWVKVK 149
G GG + E R +R KK ER T AE L E L RLK ++RK +KV
Sbjct: 341 GTGGVITRFHELRKEVKREKKLVRKEDERAPTLAELTLPEEELRRLKGIGIQIRKKLKVG 400
Query: 150 KAGVTESVVFEIRLAWRRNELAMVKFDVPLCR-NMDRAREILELKTGGLVIWTKKDAHVV 208
KAG+TE +V I WRR E+ ++ + +C+ NM R +ILE KTGGLVIW ++
Sbjct: 401 KAGITEGIVNGIHERWRRAEVVKIRCE-DICKLNMKRTHDILERKTGGLVIWRSGSYIIL 459
Query: 209 YRGDGSKSSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEEN 268
YRG K P D P S + ++N +K
Sbjct: 460 YRGANYKY-----PYFLSDNNLPNDSSHDASSDSQMNNEEHDGKEVCSSGKGDVKSAGPM 514
Query: 269 --------SLPTSIFMDKNLRID---KSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDL 317
SL + +R ++ E E DRLLDGLGPRF DWW + PLP+D DL
Sbjct: 515 PANKIAPLSLIQGVGYPTRVRFQLPGEAQLEEEADRLLDGLGPRFTDWWGYDPLPIDADL 574
Query: 318 LPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKL 377
LP VVPG++ PFRL P + KLT+DE+T LR+L PLP HF LGRNR LQGLA +++KL
Sbjct: 575 LPAVVPGYRRPFRLLPYGLKPKLTNDEMTVLRRLGRPLPCHFALGRNRKLQGLAASMIKL 634
Query: 378 WEKSLVAKITVKWGIPNTDNEQMANELKA 406
WEK +AKI VK G+ NT++E MA ELK+
Sbjct: 635 WEKCEIAKIAVKRGVQNTNSEMMAEELKS 663
Score = 172 bits (437), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 102/256 (39%), Positives = 158/256 (61%), Gaps = 12/256 (4%)
Query: 425 MQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVER-----ERELQICQNHEEGARLKA 479
+++LTGG LL R++ I+ YRGKDFLP V + I R R Q +H +
Sbjct: 844 VRNLTGGTLLSRDREFIVFYRGKDFLPPAVSSAIEARRKYGIHRGKQKIDHHRLAINAEE 903
Query: 480 IE---TFHLPDEPLEKTS--KAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLEREL 534
E + H D+ + T K +LS+ + ++S ++ + + + LE + E E+ L
Sbjct: 904 SELGTSEHASDKDCDGTDDQKTNSLSKRRMLRSAEAVVERTSIKLSMALEKK-ERAEKLL 962
Query: 535 RKQERKLLLEQ-DPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYR 593
+ E + +Q + D E ITEEER L K+G+++ LLLGRRG+FDG +E +H HWKYR
Sbjct: 963 AELEEAQIPQQPEIDKEGITEEERYMLRKVGLRMKPFLLLGRRGIFDGTVENMHLHWKYR 1022
Query: 594 EVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQN 653
E+ ++I+ + + A++L AESGGIL++V+++ +G+AII+YRGKNY+RP L Q
Sbjct: 1023 ELVKIISNGRSIEDIHGVARTLEAESGGILVAVERVSKGYAIIMYRGKNYKRPASLRPQT 1082
Query: 654 LLSKRQALRRSLEMQR 669
LL+KR+A++RSLE QR
Sbjct: 1083 LLNKREAMKRSLEAQR 1098
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 87/176 (49%), Gaps = 29/176 (16%)
Query: 481 ETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLERELRKQERK 540
+++ LP+ P+ + G ++ F +L E++ ++ +RK++
Sbjct: 328 QSWSLPENPVPEPGTGGVITRFH------------------ELRKEVKREKKLVRKED-- 367
Query: 541 LLLEQDPDLEMIT--EEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARV 598
E+ P L +T EEE + L IG++I L +G+ G+ +G++ G+H+ W+ EV ++
Sbjct: 368 ---ERAPTLAELTLPEEELRRLKGIGIQIRKKLKVGKAGITEGIVNGIHERWRRAEVVKI 424
Query: 599 ITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNL 654
+ + T L ++GG++I + G II+YRG NY+ P L NL
Sbjct: 425 RCEDICKLNMKRTHDILERKTGGLVI----WRSGSYIILYRGANYKYPYFLSDNNL 476
>gi|154986385|gb|ABS89146.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 668
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 164/292 (56%), Gaps = 31/292 (10%)
Query: 290 EGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLR 349
E D+LLDGLGPRF WW + P+PVD DLLP +VPG++ PFRL P KLTD E+T LR
Sbjct: 370 EADKLLDGLGPRFSGWWGYDPVPVDADLLPAIVPGYRRPFRLLPSGVPPKLTDREMTILR 429
Query: 350 KLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLA 409
+LAH LP H+ LGR+ LQGLA +++KLWE+ VAKI +K NTD+E + E+K
Sbjct: 430 RLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTDSELITEEVK---- 485
Query: 410 KWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQ 469
LTGG LL R+K I+ YRGKDFLP V +L +E+ R+L
Sbjct: 486 -----------------ELTGGTLLSRDKESIVFYRGKDFLPPAV-SLAIEKRRKLGSST 527
Query: 470 NHEEGARLKAIETFHLPDEPLEKTSKAGTL---SEFQNIQSDFGD-LKMGNREFELQLE- 524
++ A+ E+ ++ + K S ++ E ++ + + L ++ E +L
Sbjct: 528 IYK--AKPGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAESLNTVAKDVETRLSQ 585
Query: 525 --AEIEDLERELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLG 574
AE E+ + + E+ L + E I+E+ER L K+G+K+ LLLG
Sbjct: 586 AIAEKAKAEKLIEELEKASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLG 637
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 52/91 (57%)
Query: 121 TKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLC 180
+ AE L + L RL+ ++RK +KV KAG+TE +V I WR E+ ++ +
Sbjct: 124 SAAELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWA 183
Query: 181 RNMDRAREILELKTGGLVIWTKKDAHVVYRG 211
NM R EILE KTGGLVIW ++YRG
Sbjct: 184 MNMRRTHEILERKTGGLVIWRSGSTIILYRG 214
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 555 EERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKS 614
+E + L IG+++ L +G+ G+ +G++ G+H+ W+ EV ++ + + T +
Sbjct: 133 DELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEI 192
Query: 615 LVAESGGILISVDKLKEGHAIIIYRGKNYRRP 646
L ++GG++I + G II+YRG NY P
Sbjct: 193 LERKTGGLVI----WRSGSTIILYRGTNYTYP 220
>gi|413918578|gb|AFW58510.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 681
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 164/292 (56%), Gaps = 31/292 (10%)
Query: 290 EGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLR 349
E D+LLDGLGPRF WW + P+PVD DLLP +VPG++ PFRL P KLTD E+T LR
Sbjct: 383 EADKLLDGLGPRFSGWWGYDPVPVDADLLPAIVPGYRRPFRLLPSGVPPKLTDREMTILR 442
Query: 350 KLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLA 409
+LAH LP H+ LGR+ LQGLA +++KLWE+ VAKI +K NTD+E + E+K
Sbjct: 443 RLAHALPFHYALGRSSNLQGLAASMIKLWERCEVAKIALKRDAHNTDSELITEEVK---- 498
Query: 410 KWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQ 469
LTGG LL R+K I+ YRGKDFLP V +L +E+ R+L
Sbjct: 499 -----------------ELTGGTLLSRDKESIVFYRGKDFLPPAV-SLAIEKRRKLGSST 540
Query: 470 NHEEGARLKAIETFHLPDEPLEKTSKAGTL---SEFQNIQSDFGD-LKMGNREFELQLE- 524
++ A+ E+ ++ + K S ++ E ++ + + L ++ E +L
Sbjct: 541 IYK--AKPGIEESMPTQNDSVLKVSSDVSVHVREEGTSVTENRAESLNTVAKDVETRLSQ 598
Query: 525 --AEIEDLERELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLG 574
AE E+ + + E+ L + E I+E+ER L K+G+K+ LLLG
Sbjct: 599 AIAEKAKAEKLIEELEKASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLG 650
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 52/91 (57%)
Query: 121 TKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLC 180
+ AE L + L RL+ ++RK +KV KAG+TE +V I WR E+ ++ +
Sbjct: 137 SAAELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWA 196
Query: 181 RNMDRAREILELKTGGLVIWTKKDAHVVYRG 211
NM R EILE KTGGLVIW ++YRG
Sbjct: 197 MNMRRTHEILERKTGGLVIWRSGSTIILYRG 227
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 555 EERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKS 614
+E + L IG+++ L +G+ G+ +G++ G+H+ W+ EV ++ + + T +
Sbjct: 146 DELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEI 205
Query: 615 LVAESGGILISVDKLKEGHAIIIYRGKNYRRP 646
L ++GG++I + G II+YRG NY P
Sbjct: 206 LERKTGGLVI----WRSGSTIILYRGTNYTYP 233
>gi|147838476|emb|CAN69859.1| hypothetical protein VITISV_037991 [Vitis vinifera]
Length = 371
Score = 176 bits (445), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 80/104 (76%), Positives = 96/104 (92%)
Query: 573 LGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEG 632
GRRGVFDGVIEGLHQHWK+RE+ +VIT Q+ F+QV+YTAK L +ESGG+L+S+DKLKEG
Sbjct: 118 FGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLESESGGVLVSIDKLKEG 177
Query: 633 HAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKFF 676
HAIIIYRGKNYRRP+KL+ +NLL+KR+AL RSLEMQR+GSLKFF
Sbjct: 178 HAIIIYRGKNYRRPIKLVPKNLLTKREALNRSLEMQRIGSLKFF 221
>gi|357516865|ref|XP_003628721.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355522743|gb|AET03197.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 387
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 130/403 (32%), Positives = 188/403 (46%), Gaps = 40/403 (9%)
Query: 148 VKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHV 207
V AG+T +V I W +E+ KFD PL NM RA +ILE KTGG+V+W + V
Sbjct: 11 VGVAGITHELVDAIHEKWMVDEVVKFKFDSPLSANMKRANQILESKTGGIVVWRLGSSIV 70
Query: 208 VYRGDGSK-------SSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNR 260
+YRG K + V +A D + + + + KV V + + D
Sbjct: 71 LYRGMSYKLPCVESYTKVYNANENAVDNSVDVRSGSSVEVSVKVMVG--PAESFNRDSAE 128
Query: 261 SLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPE 320
LKD + + NL LLD LGPRF DW +PL VD D LP
Sbjct: 129 YLKD-MSEEEESMESIKLNL-------------LLDELGPRFKDWTGREPLTVDADQLPV 174
Query: 321 VVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEK 380
VVPG+K PFRL P + L++ E+T +R++A HF L GLA AI+KLWE
Sbjct: 175 VVPGYKTPFRLLPYGVKPCLSNKEMTVMRRIARRTALHFAL-------GLARAIVKLWET 227
Query: 381 SLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFL 440
S VAKI ++ G+P T N++MA ELK L NF L +H+ ++ + F
Sbjct: 228 SAVAKIAIRHGVPYTSNDRMAEELKVFLI----NFCLMHQ--LKHEHIHSLIIFMGVSF- 280
Query: 441 IILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLS 500
Y + V + ER++ + Q+ EE AR A + + AGTL+
Sbjct: 281 ---YGAMTYCLLSVTKTLTERQKLTVLQQDEEEKARQNASSITLSNSKSSQMQLLAGTLA 337
Query: 501 EFQNIQSDFGDLKMGNREFELQLEAEIEDLERELRKQERKLLL 543
E + +++G ++ E+ ++ L +R E KL L
Sbjct: 338 ETRAATANWGHQPSKQEVGKMIRESTLDRLSSLIRNHESKLAL 380
>gi|326521980|dbj|BAK04118.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 232
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 98/133 (73%)
Query: 541 LLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVIT 600
+L D EMIT EER +IG+K+ + L +G RGVFDGVIE +H HWK+REV ++IT
Sbjct: 36 VLANPSDDREMITAEERSVFRRIGLKMKAYLPVGIRGVFDGVIENMHLHWKHREVVKLIT 95
Query: 601 KQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQA 660
KQK A V TA+ L ESGGIL++++++ +GHA+I YRGKNYRRP+ + +NLL+K +A
Sbjct: 96 KQKTLAFVEETARLLEYESGGILVAIERVPKGHALIFYRGKNYRRPINIRPRNLLTKAKA 155
Query: 661 LRRSLEMQRLGSL 673
L+R++ MQR +L
Sbjct: 156 LKRAVAMQRHEAL 168
>gi|413946392|gb|AFW79041.1| hypothetical protein ZEAMMB73_840751 [Zea mays]
Length = 197
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 95/123 (77%)
Query: 551 MITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIY 610
MIT+EE+ +IG+++ + L LG RGVFDGVIE +H HWK+REV ++I+KQK + V
Sbjct: 1 MITDEEKSVFRRIGLRLKAYLPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEE 60
Query: 611 TAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRL 670
TA+ L ESGGIL++++++ +G+A+I YRGKNYRRP+ + +NLL+K +AL+R++ MQR
Sbjct: 61 TARLLAYESGGILVAIERVPKGYALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAMQRH 120
Query: 671 GSL 673
+L
Sbjct: 121 EAL 123
>gi|413946391|gb|AFW79040.1| hypothetical protein ZEAMMB73_840751 [Zea mays]
Length = 266
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/119 (52%), Positives = 93/119 (78%)
Query: 551 MITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIY 610
MIT+EE+ +IG+++ + L LG RGVFDGVIE +H HWK+REV ++I+KQK + V
Sbjct: 1 MITDEEKSVFRRIGLRLKAYLPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEE 60
Query: 611 TAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQR 669
TA+ L ESGGIL++++++ +G+A+I YRGKNYRRP+ + +NLL+K +AL+R++ MQR
Sbjct: 61 TARLLAYESGGILVAIERVPKGYALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAMQR 119
>gi|413946390|gb|AFW79039.1| hypothetical protein ZEAMMB73_840751 [Zea mays]
Length = 132
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/119 (52%), Positives = 93/119 (78%)
Query: 551 MITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIY 610
MIT+EE+ +IG+++ + L LG RGVFDGVIE +H HWK+REV ++I+KQK + V
Sbjct: 1 MITDEEKSVFRRIGLRLKAYLPLGVRGVFDGVIENMHLHWKHREVVKLISKQKTLSFVEE 60
Query: 611 TAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQR 669
TA+ L ESGGIL++++++ +G+A+I YRGKNYRRP+ + +NLL+K +AL+R++ MQR
Sbjct: 61 TARLLAYESGGILVAIERVPKGYALIFYRGKNYRRPINIRPRNLLTKAKALKRAVAMQR 119
>gi|326507158|dbj|BAJ95656.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 115
Score = 132 bits (333), Expect = 6e-28, Method: Composition-based stats.
Identities = 58/81 (71%), Positives = 64/81 (79%)
Query: 282 IDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLT 341
++ ++YERE +RLLD LGPRFVDWW PLPVD DLLPEVVPGFK PFR PP R L
Sbjct: 15 VEGTVYEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVRPTLA 74
Query: 342 DDELTYLRKLAHPLPTHFVLG 362
D+ELTYLRKLA PLPTHF LG
Sbjct: 75 DEELTYLRKLARPLPTHFALG 95
>gi|167998334|ref|XP_001751873.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696971|gb|EDQ83308.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 590
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 109/165 (66%), Gaps = 9/165 (5%)
Query: 530 LERELRKQERKL-LLEQDPDLEMITEEERQCLHKIGMKINSNLLLG-----RRGVFDGVI 583
+E+EL K + ++ L + P E I++EER K+G+++ + LL+G RRGVFDGV+
Sbjct: 124 VEKELAKLDGQMKLADAPPAKEQISDEERYMFMKLGLRMRARLLMGKLSSGRRGVFDGVV 183
Query: 584 EGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
E +H HWK+RE+ +VI K +F + TAK L ESGG+L+ + +G AII YRGKNY
Sbjct: 184 ENMHLHWKHRELVKVIFKGPIF-EAEQTAKILEMESGGVLVGIVTTTKGQAIIFYRGKNY 242
Query: 644 RRPLKLMTQNLLSKRQALRRSLEMQRLGSLK--FFRIPETAGHLQ 686
+RP +L ++LLSKRQA RSLEMQR SL+ ++ + G LQ
Sbjct: 243 QRPSELRPRHLLSKRQAYERSLEMQRKRSLEQHMLKLEKEIGKLQ 287
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 86/336 (25%), Positives = 134/336 (39%), Gaps = 66/336 (19%)
Query: 135 LKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKT 194
L+ AR + + + GV + VV + L W+ EL V F P+ A+ ILE+++
Sbjct: 160 LRMRARLLMGKLSSGRRGVFDGVVENMHLHWKHRELVKVIFKGPIFEAEQTAK-ILEMES 218
Query: 195 GG----LVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIK 250
GG +V TK A + YRG + ++ PR + +S + ++ + +K
Sbjct: 219 GGVLVGIVTTTKGQAIIFYRGKNYQRPSELRPRHLLSKRQAYERSLEMQRKRSLEQHMLK 278
Query: 251 SNTA----------TLDQNRSLKDGEENSLPTS--------IFMDKNLRIDKSLYEREGD 292
T + N L+ E+N L S F D+ R D++ E D
Sbjct: 279 LEKEIGKLQVGLYETGEGNSGLEMEEKNLLALSEPLGTVLEDFDDEEFRSDENYNENLAD 338
Query: 293 RLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRK-- 350
+ RF W KP P VV P F+ P LT E LR+
Sbjct: 339 DI-----ERF-GWKREKPNPRG------VV--LDPIFKAQP------LTIKERIRLRQEA 378
Query: 351 LAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAK 410
L P H +G++ + GLA AI ++K A + VK +T E++ +L+ +
Sbjct: 379 LKQSDPMHINIGKSNMVAGLAKAIRLYFQKQPFAIVGVKGRAKDTPVEEIIQQLEEA--- 435
Query: 411 WKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRG 446
TG VL+ R +ILYRG
Sbjct: 436 ------------------TGAVLVSREPNKLILYRG 453
>gi|326494498|dbj|BAJ90518.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326502328|dbj|BAJ95227.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 95
Score = 130 bits (327), Expect = 2e-27, Method: Composition-based stats.
Identities = 58/81 (71%), Positives = 64/81 (79%)
Query: 282 IDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLT 341
++ ++YERE +RLLD LGPRFVDWW PLPVD DLLPEVVPGFK PFR PP R L
Sbjct: 15 VEGTVYEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVRPTLA 74
Query: 342 DDELTYLRKLAHPLPTHFVLG 362
D+ELTYLRKLA PLPTHF LG
Sbjct: 75 DEELTYLRKLARPLPTHFALG 95
>gi|326506924|dbj|BAJ91503.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 118
Score = 127 bits (320), Expect = 2e-26, Method: Composition-based stats.
Identities = 57/80 (71%), Positives = 63/80 (78%)
Query: 282 IDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLT 341
++ ++YERE +RLLD LGPRFVDWW PLPVD DLLPEVVPGFK PFR PP R L
Sbjct: 15 VEGTVYEREVNRLLDSLGPRFVDWWWNTPLPVDADLLPEVVPGFKTPFRQCPPGVRPTLA 74
Query: 342 DDELTYLRKLAHPLPTHFVL 361
D+ELTYLRKLA PLPTHF L
Sbjct: 75 DEELTYLRKLARPLPTHFAL 94
>gi|297612106|ref|NP_001068192.2| Os11g0592400 [Oryza sativa Japonica Group]
gi|255680227|dbj|BAF28555.2| Os11g0592400, partial [Oryza sativa Japonica Group]
Length = 108
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 77/98 (78%)
Query: 572 LLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKE 631
L GRRGVFDG IE +H HWKYRE+ +++ K K F V A SL AESGGIL+SVDK+ +
Sbjct: 6 LSGRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSK 65
Query: 632 GHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQR 669
G+AI+++RGK+Y RP KL +NLLSKR+AL RS+E+QR
Sbjct: 66 GYAIVVFRGKDYARPSKLRPRNLLSKRKALARSIEIQR 103
>gi|449438181|ref|XP_004136868.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 352
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 77/138 (55%), Gaps = 3/138 (2%)
Query: 533 ELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKY 592
+LRK E + D E++TEEE+ L + G K + +LLGRRGVF GV+ +H HWK
Sbjct: 179 KLRKFEIPKPFVEKYDPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKK 238
Query: 593 REVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQ 652
E +VI K QV A+ L S GI+I + K ++II YRGKNY +P +
Sbjct: 239 HETVKVICKPCKPGQVHEYAEELTRLSKGIVIDI---KPNNSIIFYRGKNYVQPEVMSPP 295
Query: 653 NLLSKRQALRRSLEMQRL 670
N LSK +AL + Q L
Sbjct: 296 NTLSKDKALEKYKYEQSL 313
>gi|449479099|ref|XP_004155504.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 290
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 71/123 (57%), Gaps = 3/123 (2%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E++TEEE+ L + G K + +LLGRRGVF GV+ +H HWK E +VI K Q
Sbjct: 132 DPEILTEEEKHYLKRTGEKKKNFVLLGRRGVFGGVVLNMHMHWKKHETVKVICKPCKPGQ 191
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEM 667
V A+ L S GI+I + K ++II YRGKNY +P + N LSK +AL +
Sbjct: 192 VHEYAEELTRLSKGIVIDI---KPNNSIIFYRGKNYVQPEVMSPPNTLSKDKALEKYKYE 248
Query: 668 QRL 670
Q L
Sbjct: 249 QSL 251
>gi|255567361|ref|XP_002524660.1| conserved hypothetical protein [Ricinus communis]
gi|223536021|gb|EEF37679.1| conserved hypothetical protein [Ricinus communis]
Length = 260
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 10/165 (6%)
Query: 513 KMGNREFELQLEAEIEDLERE-------LRKQERKLLLEQDPDLEMITEEERQCLHKIGM 565
KM + E+++ ++E +R+ L K E L + D EM+TEEE+ L + G
Sbjct: 60 KMNSPNPEVRIRYKLEKAKRKEAWLIEKLSKFEVPKLRAETCDPEMLTEEEKHYLKRTGE 119
Query: 566 KINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILIS 625
K + +L+GRRGVF GV+ +H HWK E ++I K Q+ A+ L S GI+I
Sbjct: 120 KKKNFILVGRRGVFGGVVLNMHLHWKKHETVKIICKPCKPGQIHQYAEELARLSKGIVID 179
Query: 626 VDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRL 670
+ + ++II YRGKNY +P + + LSK +AL + Q L
Sbjct: 180 I---RPNNSIIFYRGKNYVQPTVMSPPDTLSKNKALEKYKYEQSL 221
>gi|356511313|ref|XP_003524371.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 282
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 89/165 (53%), Gaps = 10/165 (6%)
Query: 513 KMGNREFELQLEAEIEDLERE---LRKQERKLLLEQDP----DLEMITEEERQCLHKIGM 565
KM + E+++ ++E +R+ L ++ RK + + P D E++TEEER L + G
Sbjct: 79 KMNSPNPEVRIRYKLEKAKRKETWLIEKLRKFDVPKPPPETYDPEILTEEERHYLKRTGE 138
Query: 566 KINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILIS 625
+ + +GRRGVF GV+ +H HWK E +VI K QV A+ L S GI+I
Sbjct: 139 RKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQVHEYAEELARLSKGIVID 198
Query: 626 VDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRL 670
+ K + II YRGKNY +P + N LSK +AL + Q L
Sbjct: 199 I---KPNNTIIFYRGKNYVKPEVMSPPNTLSKAKALEKYRYEQSL 240
>gi|125547308|gb|EAY93130.1| hypothetical protein OsI_14936 [Oryza sativa Indica Group]
Length = 103
Score = 86.3 bits (212), Expect = 5e-14, Method: Composition-based stats.
Identities = 41/76 (53%), Positives = 49/76 (64%)
Query: 287 YEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELT 346
YE E D+L D LGPR+ DW P P+D DLLP VPG+KPPFR+ P R L+ + T
Sbjct: 21 YEDEIDKLSDELGPRYDDWPRPDPSPIDADLLPATVPGYKPPFRVLPYGVRPSLSRRDTT 80
Query: 347 YLRKLAHPLPTHFVLG 362
LR+LA LP HF LG
Sbjct: 81 NLRRLARGLPPHFALG 96
>gi|326525483|dbj|BAJ88788.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 340
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 87/165 (52%), Gaps = 10/165 (6%)
Query: 513 KMGNREFELQLEAEIEDLERE-------LRKQERKLLLEQDPDLEMITEEERQCLHKIGM 565
KM + E+++ ++E +R+ LRK E E D E++TEEE+ L + G
Sbjct: 127 KMKSPNPEVRIRYKLEKAKRKEEWLIEKLRKYEAPRAPEPVHDPEILTEEEKFYLKRTGE 186
Query: 566 KINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILIS 625
K + + +GRRGVF GV+ +H HWK E +V+ K QV A+ L S G +I
Sbjct: 187 KKKNYVPVGRRGVFGGVVLNMHLHWKKHETMKVVCKPCRPGQVYEYAEELARLSKGTVID 246
Query: 626 VDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRL 670
+ K + II YRGKNY +P + + LSK++AL + Q L
Sbjct: 247 I---KPNNTIIFYRGKNYVQPKVMSPPDTLSKQKALEKYRYEQSL 288
>gi|357124470|ref|XP_003563923.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Brachypodium distachyon]
Length = 337
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 513 KMGNREFELQLEAEIEDLERE-------LRKQERKLLLEQDPDLEMITEEERQCLHKIGM 565
KM + E+++ ++E +R+ LRK E + E D E++TEEE+ L + G
Sbjct: 124 KMKSPNPEVRIRYKLEKAKRKEEWLIEKLRKYEVPRVPEPVHDPEILTEEEKFYLKRTGE 183
Query: 566 KINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILIS 625
K + + +GRRGVF GV+ +H HWK E +V+ K QV A+ L S G +I
Sbjct: 184 KKKNYVPVGRRGVFGGVVLNMHLHWKKHETMKVVCKPCRPGQVYEYAEELARLSKGTVID 243
Query: 626 VDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRL 670
+ K + II YRGKNY +P + + LSK++AL + Q L
Sbjct: 244 I---KPNNTIIFYRGKNYVQPKVMSPPDTLSKQKALEKYRYEQSL 285
>gi|356524301|ref|XP_003530768.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 282
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E++TEEER L + G K + +GRRGVF GV+ +H HWK E +VI K Q
Sbjct: 121 DPEILTEEERHYLKRTGEKKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQ 180
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEM 667
V A+ L S GI+I + K + II YRGKNY +P + N LSK +AL +
Sbjct: 181 VHEYAEELARLSKGIVIDI---KPNNTIIFYRGKNYVQPEVMSPPNTLSKVKALEKYRYE 237
Query: 668 QRL 670
Q L
Sbjct: 238 QSL 240
>gi|225444203|ref|XP_002270373.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic [Vitis vinifera]
gi|296089227|emb|CBI38999.3| unnamed protein product [Vitis vinifera]
Length = 269
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 81/151 (53%), Gaps = 13/151 (8%)
Query: 530 LERELRKQE------RKLLLEQDP----DLEMITEEERQCLHKIGMKINSNLLLGRRGVF 579
LE+ RK+E RK + + P D E++TEEE+ L + G K + + +GRRGVF
Sbjct: 90 LEKAKRKEEWLIEKLRKFDIPKAPTEAYDPEILTEEEKFYLKRTGEKKKNYVPVGRRGVF 149
Query: 580 DGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYR 639
GV+ +H HWK E +VI K QV A+ L S GI+I + K + II YR
Sbjct: 150 GGVVLNMHLHWKKHETVKVICKPCKVGQVYEYAEELARLSKGIMIDI---KPNNTIIFYR 206
Query: 640 GKNYRRPLKLMTQNLLSKRQALRRSLEMQRL 670
GKNY +P + + LSK +AL + Q L
Sbjct: 207 GKNYVQPQVMSPPDTLSKSKALEKYRYEQSL 237
>gi|115467732|ref|NP_001057465.1| Os06g0304500 [Oryza sativa Japonica Group]
gi|113595505|dbj|BAF19379.1| Os06g0304500 [Oryza sativa Japonica Group]
gi|125596971|gb|EAZ36751.1| hypothetical protein OsJ_21087 [Oryza sativa Japonica Group]
Length = 348
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 87/165 (52%), Gaps = 10/165 (6%)
Query: 513 KMGNREFELQLEAEIEDLERE-------LRKQERKLLLEQDPDLEMITEEERQCLHKIGM 565
KM + E+++ ++E +R+ LRK E E D E++TEEE+ L + G
Sbjct: 136 KMKSPNPEVRIRYKLEKAKRKEEWLIEKLRKYEVPRSPEPVHDPEILTEEEKFYLKRTGE 195
Query: 566 KINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILIS 625
K + + +GRRGVF GV+ +H HWK E +VI K QV A+ L S G +I
Sbjct: 196 KKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQVYEYAEELTRLSKGTVID 255
Query: 626 VDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRL 670
+ K + II YRGKNY +P + + LSK++AL + Q L
Sbjct: 256 I---KPNNTIIFYRGKNYVQPKVMSPPDTLSKQKALEKYRYEQSL 297
>gi|162459283|ref|NP_001105859.1| LOC732768 [Zea mays]
gi|89212802|gb|ABD63903.1| CFM6 [Zea mays]
gi|413918693|gb|AFW58625.1| hypothetical protein ZEAMMB73_217436 [Zea mays]
Length = 338
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 87/165 (52%), Gaps = 10/165 (6%)
Query: 513 KMGNREFELQLEAEIEDLERE-------LRKQERKLLLEQDPDLEMITEEERQCLHKIGM 565
KM + E+++ ++E +R+ LRK E E D E++TEEE+ L + G
Sbjct: 124 KMKSPNPEVRIRYKLEKAKRKEEWLIEKLRKYEVPRTPEPVHDPEILTEEEKFYLKRTGE 183
Query: 566 KINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILIS 625
K + + +GRRGVF GV+ +H HWK E +V+ K QV A+ L S G +I
Sbjct: 184 KKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCRPGQVYEYAEELTRLSKGTVID 243
Query: 626 VDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRL 670
+ K + I+ YRGKNY +P + LSK++AL + +Q L
Sbjct: 244 I---KPNNTIMFYRGKNYVQPKVMSPPETLSKQKALEKYRYLQSL 285
>gi|238007578|gb|ACR34824.1| unknown [Zea mays]
gi|414586597|tpg|DAA37168.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
Length = 342
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 94/158 (59%), Gaps = 17/158 (10%)
Query: 535 RKQERKLLLE------QDP-----DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVI 583
RK+E +L++ +DP D E++T EE K+G K + + +GRRG++ GVI
Sbjct: 15 RKKEERLVVALKKIEPEDPSEPTHDPEVLTPEEHFYFLKMGQKCKNYVPVGRRGIYQGVI 74
Query: 584 EGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
+H HWK + +VI K +V A L SGGI++ + ++G+ II+YRGKNY
Sbjct: 75 LNMHLHWKKHQTLQVIVKTFTPEEVKEIAIELATLSGGIVLDI---QDGNTIIMYRGKNY 131
Query: 644 RR-PLKLMTQNL-LSKRQALRRSLEMQRLGSLKFFRIP 679
+ P ++M+ + LS+++AL +S M++L +L+ + IP
Sbjct: 132 AQPPPEIMSPKVSLSRKKALDKSKYMEKLRALRRY-IP 168
>gi|212723506|ref|NP_001132081.1| uncharacterized protein LOC100193495 [Zea mays]
gi|194693368|gb|ACF80768.1| unknown [Zea mays]
gi|414586598|tpg|DAA37169.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
gi|414586599|tpg|DAA37170.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
Length = 485
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 94/158 (59%), Gaps = 17/158 (10%)
Query: 535 RKQERKLLLE------QDP-----DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVI 583
RK+E +L++ +DP D E++T EE K+G K + + +GRRG++ GVI
Sbjct: 158 RKKEERLVVALKKIEPEDPSEPTHDPEVLTPEEHFYFLKMGQKCKNYVPVGRRGIYQGVI 217
Query: 584 EGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
+H HWK + +VI K +V A L SGGI++ + ++G+ II+YRGKNY
Sbjct: 218 LNMHLHWKKHQTLQVIVKTFTPEEVKEIAIELATLSGGIVLDI---QDGNTIIMYRGKNY 274
Query: 644 RR-PLKLMTQNL-LSKRQALRRSLEMQRLGSLKFFRIP 679
+ P ++M+ + LS+++AL +S M++L +L+ + IP
Sbjct: 275 AQPPPEIMSPKVSLSRKKALDKSKYMEKLRALRRY-IP 311
>gi|357167884|ref|XP_003581379.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Brachypodium distachyon]
Length = 485
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 90/158 (56%), Gaps = 17/158 (10%)
Query: 535 RKQERKLLLE------QDP-----DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVI 583
RK+E +LL DP D E++T EE K+G K + + +GRRG++ GVI
Sbjct: 158 RKKEERLLAALKKIEPNDPSEPTHDPEVLTPEEHFYFLKMGQKSKNYVPVGRRGIYQGVI 217
Query: 584 EGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
+H HWK + +VI K +V A L SGGI++S+ +EG+ II+YRGKNY
Sbjct: 218 LNMHLHWKKHQTLQVIVKTFTPEEVKEIASELAILSGGIVLSI---QEGNTIIMYRGKNY 274
Query: 644 RR-PLKLMTQNL-LSKRQALRRSLEMQRLGSLKFFRIP 679
+ P ++M+ + L +++AL +S RL +L+ + IP
Sbjct: 275 AQPPPEIMSPKIALPRKKALDKSKYRDRLRALRRY-IP 311
>gi|242076260|ref|XP_002448066.1| hypothetical protein SORBIDRAFT_06g020410 [Sorghum bicolor]
gi|241939249|gb|EES12394.1| hypothetical protein SORBIDRAFT_06g020410 [Sorghum bicolor]
Length = 338
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 513 KMGNREFELQLEAEIEDLERE-------LRKQERKLLLEQDPDLEMITEEERQCLHKIGM 565
KM + E+++ ++E +R+ LRK + E D E++TEEE+ L + G
Sbjct: 125 KMKSPNPEVRIRYKLEKAKRKEEWLIEKLRKYDVPRTPEPVHDPEILTEEEKFYLKRTGE 184
Query: 566 KINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILIS 625
K + + +GRRGVF GV+ +H HWK E +V+ K QV A+ L S G +I
Sbjct: 185 KKKNYVPVGRRGVFGGVVLNMHLHWKNHETVKVVCKPCRPGQVYEYAEELTRLSKGTIID 244
Query: 626 VDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRL 670
+ K + I+ YRGKNY +P + + LSK++AL + +Q L
Sbjct: 245 I---KPNNTIMFYRGKNYVQPQVMSPPDTLSKQKALEKYRYLQSL 286
>gi|242073570|ref|XP_002446721.1| hypothetical protein SORBIDRAFT_06g021160 [Sorghum bicolor]
gi|241937904|gb|EES11049.1| hypothetical protein SORBIDRAFT_06g021160 [Sorghum bicolor]
Length = 484
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 93/158 (58%), Gaps = 17/158 (10%)
Query: 535 RKQERKLLLE------QDP-----DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVI 583
RK+E +L+ +DP D E++T EE K+G K + + +GRRG++ GVI
Sbjct: 157 RKKEERLVAALKKIEPEDPSEPTHDPEVLTPEEHFYFLKMGQKCKNYVPVGRRGIYQGVI 216
Query: 584 EGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
+H HWK + +VI K +V A L SGGI++ + ++G+ II+YRGKNY
Sbjct: 217 LNMHLHWKKHQTLQVIVKTFTPEEVKEIATELARLSGGIVLDI---QDGNTIIMYRGKNY 273
Query: 644 RR-PLKLMTQNL-LSKRQALRRSLEMQRLGSLKFFRIP 679
+ P ++M+ + LS+++AL +S M++L +L+ + IP
Sbjct: 274 AQPPPEIMSPKVSLSRKKALDKSKYMEKLRALRRY-IP 310
>gi|5123948|emb|CAB45506.1| putative protein [Arabidopsis thaliana]
gi|7268009|emb|CAB78349.1| putative protein [Arabidopsis thaliana]
Length = 332
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 82/152 (53%), Gaps = 14/152 (9%)
Query: 530 LERELRKQE------RKLLLEQDP----DLEMITEEERQCLHKIGMKINSNLLLGRRGVF 579
LE+ RK+E RK + + P D E +TEEE+ L + G K + +L+GRRGVF
Sbjct: 139 LEKAKRKEEWLIEKLRKYDVPKSPAEPYDPESLTEEEQHYLKRTGEKRKNFVLVGRRGVF 198
Query: 580 DGVIEGLHQHWKYREVARVITKQ-KLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIY 638
GV+ LH HWK E +VI K QV A+ L S GI+I V K + I++Y
Sbjct: 199 GGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVIDV---KPNNTIVLY 255
Query: 639 RGKNYRRPLKLMTQNLLSKRQALRRSLEMQRL 670
RGKNY RP + + LSK +AL + Q L
Sbjct: 256 RGKNYVRPEVMSPVDTLSKDKALEKYRYEQSL 287
>gi|357478871|ref|XP_003609721.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355510776|gb|AES91918.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 399
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 10/165 (6%)
Query: 513 KMGNREFELQLEAEIEDLERE-------LRKQERKLLLEQDPDLEMITEEERQCLHKIGM 565
KM + E+++ ++E +R+ LRK + L + D E++TEEER L + G
Sbjct: 206 KMYSPNPEVRIRYKLEKAKRKETWLIEKLRKFDVPKLPTETFDPEILTEEERHYLKRTGE 265
Query: 566 KINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILIS 625
K + +GRRGVF GV+ +H HWK E +VI K Q A+ L S GI+I
Sbjct: 266 KKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQAHEYAEELARLSKGIVID 325
Query: 626 VDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRL 670
+ K II YRGKNY +P + + LSK +AL + Q L
Sbjct: 326 I---KPNSIIIFYRGKNYVQPKVMSPPDTLSKAKALEKYRYEQSL 367
>gi|42566743|ref|NP_193043.2| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|51968644|dbj|BAD43014.1| putative protein [Arabidopsis thaliana]
gi|51971084|dbj|BAD44234.1| putative protein [Arabidopsis thaliana]
gi|51971893|dbj|BAD44611.1| putative protein [Arabidopsis thaliana]
gi|63003852|gb|AAY25455.1| At4g13070 [Arabidopsis thaliana]
gi|115646846|gb|ABJ17138.1| At4g13070 [Arabidopsis thaliana]
gi|332657826|gb|AEE83226.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 343
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 11/166 (6%)
Query: 513 KMGNREFELQLEAEIEDLERE---LRKQERKLLLEQDP----DLEMITEEERQCLHKIGM 565
KM + E+++ ++E +R+ L ++ RK + + P D E +TEEE+ L + G
Sbjct: 136 KMNSPNPEVRIRYKLEKAKRKEEWLIEKLRKYDVPKSPAEPYDPESLTEEEQHYLKRTGE 195
Query: 566 KINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQ-KLFAQVIYTAKSLVAESGGILI 624
K + +L+GRRGVF GV+ LH HWK E +VI K QV A+ L S GI+I
Sbjct: 196 KRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVI 255
Query: 625 SVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRL 670
V K + I++YRGKNY RP + + LSK +AL + Q L
Sbjct: 256 DV---KPNNTIVLYRGKNYVRPEVMSPVDTLSKDKALEKYRYEQSL 298
>gi|224153240|ref|XP_002337334.1| predicted protein [Populus trichocarpa]
gi|222838796|gb|EEE77147.1| predicted protein [Populus trichocarpa]
Length = 234
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 85/164 (51%), Gaps = 45/164 (27%)
Query: 1 MPTAPWMRSPIVLQPDEIIKPSKPKTKKSFK-----KTDKGLTAKESGVRGKQAMKKIIE 55
+PT PW++ P++LQP E++ + PK KK K K DK LTAKESGVRG +AM +I++
Sbjct: 71 VPTPPWIKGPLILQPHELLNLTNPKNKKPIKNDKIEKDDKALTAKESGVRGNKAMIQIVK 130
Query: 56 NIEKLQKDQILDETQK--------KVMEKFEFKGCF--------------EENVSHEEDL 93
++E+LQ+D+ L +TQ+ K + K F ++N+ +
Sbjct: 131 SVERLQRDENLKDTQEISESGESLKQLGKERILSVFGDKRIVRSIEKLQKDQNLKETPEN 190
Query: 94 RGGF---------GG---------KVPWLREDRFVFRRMKKERM 119
GGF G K+PW+RE+R RMKKE++
Sbjct: 191 SGGFEIGEGLKQLNGDGVLGFREKKLPWVREERVGNWRMKKEKV 234
>gi|125555042|gb|EAZ00648.1| hypothetical protein OsI_22670 [Oryza sativa Indica Group]
Length = 304
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 79/147 (53%), Gaps = 14/147 (9%)
Query: 530 LERELRKQE------RKLLLEQDP----DLEMITEEERQCLHKIGMKINSNLLLGRRGVF 579
LE+ RK+E RK + + P D E++TEEE+ L + G K + + +GRRGVF
Sbjct: 126 LEKAKRKEEWLIEKLRKYEVPRSPEPVHDPEILTEEEKFYLKRTGEKKKNYVPVGRRGVF 185
Query: 580 DGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYR 639
GV+ +H HWK E +VI K QV A+ L S G +I + K + II YR
Sbjct: 186 GGVVLNMHLHWKKHETVKVICKPCRPGQVYEYAEELTRLSKGTVIDI---KPNNTIIFYR 242
Query: 640 GKNYRRPLKLMTQNLLSKRQALRRSLE 666
GKNY +P + + LSK Q L + LE
Sbjct: 243 GKNYVQPKVMSPPDTLSK-QKLEKELE 268
>gi|297790600|ref|XP_002863185.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309019|gb|EFH39444.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 343
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 88/166 (53%), Gaps = 11/166 (6%)
Query: 513 KMGNREFELQLEAEIEDLERE-------LRKQERKLLLEQDPDLEMITEEERQCLHKIGM 565
KM + E+++ ++E +R+ LRK + + D E +TEEE+ L + G
Sbjct: 136 KMNSPNPEVRIRYKLEKAKRKEEWLIEKLRKYDVPKSSAEPYDPESLTEEEQHYLKRTGE 195
Query: 566 KINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQ-KLFAQVIYTAKSLVAESGGILI 624
K + +L+GRRGVF GV+ LH HWK E +VI K QV A+ L S GI+I
Sbjct: 196 KRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVI 255
Query: 625 SVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRL 670
V K + I++YRGKNY RP + + LSK +AL + Q L
Sbjct: 256 DV---KPNNTIVLYRGKNYVRPEVMSPVDTLSKDKALEKYRYEQSL 298
>gi|115459160|ref|NP_001053180.1| Os04g0492900 [Oryza sativa Japonica Group]
gi|21740788|emb|CAD41533.1| OSJNBb0091E11.2 [Oryza sativa Japonica Group]
gi|38346227|emb|CAE02049.2| OJ990528_30.7 [Oryza sativa Japonica Group]
gi|90265163|emb|CAH67731.1| H0522A01.2 [Oryza sativa Indica Group]
gi|113564751|dbj|BAF15094.1| Os04g0492900 [Oryza sativa Japonica Group]
gi|116310744|emb|CAH67539.1| H0425E08.7 [Oryza sativa Indica Group]
gi|125548841|gb|EAY94663.1| hypothetical protein OsI_16441 [Oryza sativa Indica Group]
Length = 479
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 81/134 (60%), Gaps = 6/134 (4%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E++T EE K+G K + + +GRRG++ GVI +H HWK + +VI K +
Sbjct: 175 DPEVLTPEEHFYFLKMGQKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPDE 234
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRR-PLKLMTQNL-LSKRQALRRSL 665
V A L SGGI++ + +EG+ II+YRGKNY + P ++M+ + L +++AL +S
Sbjct: 235 VKEIASELARLSGGIVLDI---QEGNTIIMYRGKNYAQPPPEIMSPKVTLPRKKALDKSK 291
Query: 666 EMQRLGSLKFFRIP 679
+RL +L+ + IP
Sbjct: 292 YRERLRALRRY-IP 304
>gi|15226402|ref|NP_180415.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|4510396|gb|AAD21483.1| hypothetical protein [Arabidopsis thaliana]
gi|44917583|gb|AAS49116.1| At2g28480 [Arabidopsis thaliana]
gi|110741747|dbj|BAE98819.1| hypothetical protein [Arabidopsis thaliana]
gi|330253035|gb|AEC08129.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 372
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 552 ITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYT 611
IT EER L K+G K ++ + +GRRGVF GVI +H HWK E +VI QV
Sbjct: 164 ITGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQVQQY 223
Query: 612 AKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLG 671
A+ L SGG+ +++ II YRGK Y +P + + LSK++A +S Q L
Sbjct: 224 AEELAKLSGGVPVNIIG---DDTIIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKYEQSLE 280
Query: 672 SLKFF 676
S++ F
Sbjct: 281 SVRHF 285
>gi|9837554|gb|AAG00597.1| CRS1 [Zea mays]
Length = 235
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 88/188 (46%), Gaps = 23/188 (12%)
Query: 22 SKPK-TKKSFKKTDKGLTAKESGVRGKQAMKKIIENIEKLQKDQILDETQKKVMEKFEFK 80
SKP +K+ K T K LTA G R +A+ II + L+
Sbjct: 53 SKPAPARKNTKTTAKPLTAGVPGGRTHRAVLGIIRRVRSLELSDAPSPNSVHTSNGGAAA 112
Query: 81 GCFE------------ENVSHEEDLRGGFGGKVPWL--RED--RFVFRRMKKERMVTKAE 124
F + V +E R VPW R++ + RR KK R T+AE
Sbjct: 113 AAFHLTIELSPPREPGQYVVEKEKSRA-----VPWAAARDEGLKVALRREKKPREPTRAE 167
Query: 125 TMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRN-ELAMVKFDVPLCRNM 183
T L+ L RL+ AR + +W + KKAGVT+ VV E+R W ELA V+ PL R+M
Sbjct: 168 TELETHELHRLRRLARGIGRWARAKKAGVTDEVVKEVRREWASGEELAAVRIVEPLRRSM 227
Query: 184 DRAREILE 191
DRAREILE
Sbjct: 228 DRAREILE 235
>gi|255585329|ref|XP_002533362.1| conserved hypothetical protein [Ricinus communis]
gi|223526802|gb|EEF29024.1| conserved hypothetical protein [Ricinus communis]
Length = 412
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 552 ITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYT 611
+T EER + K+ K ++ + LGRRGVF GVI +H HWK E +VI QV
Sbjct: 144 LTGEERFFMKKMAQKQSNYVPLGRRGVFGGVILNMHMHWKKHETVKVICNFCKPGQVHEY 203
Query: 612 AKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLG 671
A+ + SGGI I V II YRGKNY +P + + LSK++AL +S Q L
Sbjct: 204 AQEIARLSGGIPIQVIG---DDTIIFYRGKNYVQPEVMSPIDTLSKKRALEKSKYEQSLE 260
Query: 672 SLKFF 676
S++ F
Sbjct: 261 SVRRF 265
>gi|359478175|ref|XP_002266278.2| PREDICTED: uncharacterized protein LOC100250974 [Vitis vinifera]
Length = 711
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 552 ITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYT 611
+T EER + K+ K ++ + +GRRGVF GVI +H HWK E +VI K QV
Sbjct: 454 LTGEERFYMKKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEY 513
Query: 612 AKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLG 671
A + SGG I ++ II YRGKNY +P + + LSK++AL +S Q L
Sbjct: 514 ANEIARLSGGTPI---QIIGDDTIIFYRGKNYVQPEVMSPIDTLSKKRALEKSKYEQSLE 570
Query: 672 SLKFF 676
S++ F
Sbjct: 571 SVRRF 575
>gi|147820521|emb|CAN67658.1| hypothetical protein VITISV_012474 [Vitis vinifera]
Length = 375
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 552 ITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYT 611
+T EER + K+ K ++ + +GRRGVF GVI +H HWK E +VI K QV
Sbjct: 118 LTGEERFYMKKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEY 177
Query: 612 AKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLG 671
A + SGG I + II YRGKNY +P + + LSK++AL +S Q L
Sbjct: 178 ANEIARLSGGTPIQIIG---DDTIIFYRGKNYVQPEXMSPIDTLSKKRALEKSKYEQSLE 234
Query: 672 SLKFF 676
S++ F
Sbjct: 235 SVRRF 239
>gi|356544514|ref|XP_003540695.1| PREDICTED: uncharacterized protein LOC100796393 [Glycine max]
Length = 426
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 552 ITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYT 611
+T EER L K+ K ++ L +GRRG+F GV+ +H HWK E +V K QV
Sbjct: 172 LTGEERFYLKKMAQKRSNYLQIGRRGLFGGVVLNMHMHWKKHETVKVFCKPCKPGQVHEY 231
Query: 612 AKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLG 671
A+ L SGGI + + II YRGKNY +P + + LSK++AL +S Q L
Sbjct: 232 AQELARLSGGIPLQIIG---DDTIIFYRGKNYEQPEVMSPIDTLSKKKALEKSKYEQSLE 288
Query: 672 SLKFF 676
S++ F
Sbjct: 289 SVRRF 293
>gi|449437795|ref|XP_004136676.1| PREDICTED: uncharacterized protein LOC101208777 [Cucumis sativus]
gi|449494725|ref|XP_004159629.1| PREDICTED: uncharacterized LOC101208777 [Cucumis sativus]
Length = 431
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Query: 552 ITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYT 611
+T EER + K+G K ++ + +GRRGVF GVI +H HWK E +V K QV
Sbjct: 168 LTGEERFYIKKMGQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEY 227
Query: 612 AKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLG 671
A+ + SGGI I ++ II YRGK+Y +P + + LSK++AL +S Q L
Sbjct: 228 AQEIARLSGGIPI---QIIGDDTIIFYRGKDYVQPEVMSPIDTLSKKRALEKSKYEQSLE 284
Query: 672 SLKFF 676
S++ F
Sbjct: 285 SVRRF 289
>gi|224128874|ref|XP_002328988.1| predicted protein [Populus trichocarpa]
gi|222839222|gb|EEE77573.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 10/165 (6%)
Query: 513 KMGNREFELQLEAEIEDLERE---LRKQERKLLLEQDP----DLEMITEEERQCLHKIGM 565
KM + E+++ ++E +R+ L ++ RKL + + P D E++TEEE+ L + G
Sbjct: 133 KMNSPNPEVRIRYKLEKAKRKEAWLIEKLRKLEVPKTPGEAYDPEILTEEEKHYLKRTGE 192
Query: 566 KINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILIS 625
K + + +GRRGVF GV+ +H HWK E +V K Q+ A+ L S GI I
Sbjct: 193 KKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVTCKPCKPGQIDEYAEELARLSKGIAID 252
Query: 626 VDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRL 670
+ + + II YRGKNY +P + + LSK +AL + Q L
Sbjct: 253 I---RPDNTIIFYRGKNYVQPKIMSPPDTLSKDKALEKYRYEQSL 294
>gi|115442347|ref|NP_001045453.1| Os01g0958400 [Oryza sativa Japonica Group]
gi|57900096|dbj|BAD88158.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900276|dbj|BAD87109.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|113534984|dbj|BAF07367.1| Os01g0958400 [Oryza sativa Japonica Group]
gi|215768161|dbj|BAH00390.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189771|gb|EEC72198.1| hypothetical protein OsI_05277 [Oryza sativa Indica Group]
gi|222619906|gb|EEE56038.1| hypothetical protein OsJ_04827 [Oryza sativa Japonica Group]
Length = 415
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 5/168 (2%)
Query: 555 EERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKS 614
EER L K+ K ++ + +GRRGVF GVI +H HWK E +VI K Q+ A
Sbjct: 175 EERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASE 234
Query: 615 LVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSL- 673
+ SGGI I+ I+ YRGKNY +P + + LSK++AL +S Q L ++
Sbjct: 235 IARLSGGIPINTIG---NDTIVFYRGKNYVQPDVMSPVDTLSKKKALEKSKYEQSLETVR 291
Query: 674 KFFRIPETAGHLQFENQTYLPKKAKLLAHLPLYCLLSQISSVRIYFPS 721
+F + E L + + L + P+YC + +S+++ PS
Sbjct: 292 RFIAVSEKELELYYRH-IALYGNPQSQNVDPVYCDDRRAASLKMEEPS 338
>gi|57900098|dbj|BAD88160.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900278|dbj|BAD87111.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
Length = 394
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 5/168 (2%)
Query: 555 EERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKS 614
EER L K+ K ++ + +GRRGVF GVI +H HWK E +VI K Q+ A
Sbjct: 175 EERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASE 234
Query: 615 LVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSL- 673
+ SGGI I+ I+ YRGKNY +P + + LSK++AL +S Q L ++
Sbjct: 235 IARLSGGIPINTIG---NDTIVFYRGKNYVQPDVMSPVDTLSKKKALEKSKYEQSLETVR 291
Query: 674 KFFRIPETAGHLQFENQTYLPKKAKLLAHLPLYCLLSQISSVRIYFPS 721
+F + E L + + L + P+YC + +S+++ PS
Sbjct: 292 RFIAVSEKELELYYRH-IALYGNPQSQNVDPVYCDDRRAASLKMEEPS 338
>gi|57900097|dbj|BAD88159.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900277|dbj|BAD87110.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|215695021|dbj|BAG90212.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 417
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 9/170 (5%)
Query: 555 EERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKS 614
EER L K+ K ++ + +GRRGVF GVI +H HWK E +VI K Q+ A
Sbjct: 175 EERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASE 234
Query: 615 LVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSL- 673
+ SGGI I+ I+ YRGKNY +P + + LSK++AL +S Q L ++
Sbjct: 235 IARLSGGIPINTIG---NDTIVFYRGKNYVQPDVMSPVDTLSKKKALEKSKYEQSLETVR 291
Query: 674 KFFRIPETAGHLQFENQTYL--PKKAKLLAHLPLYCLLSQISSVRIYFPS 721
+F + E L + + P+ + P+YC + +S+++ PS
Sbjct: 292 RFIAVSEKELELYYRHIALYGNPQSQNV---DPVYCDDRRAASLKMEEPS 338
>gi|297743805|emb|CBI36688.3| unnamed protein product [Vitis vinifera]
Length = 332
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 552 ITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYT 611
+T EER + K+ K ++ + +GRRGVF GVI +H HWK E +VI K QV
Sbjct: 75 LTGEERFYMKKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEY 134
Query: 612 AKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLG 671
A + SGG I ++ II YRGKNY +P + + LSK++AL +S Q L
Sbjct: 135 ANEIARLSGGTPI---QIIGDDTIIFYRGKNYVQPEVMSPIDTLSKKRALEKSKYEQSLE 191
Query: 672 SLKFF 676
S++ F
Sbjct: 192 SVRRF 196
>gi|297822421|ref|XP_002879093.1| hypothetical protein ARALYDRAFT_901658 [Arabidopsis lyrata subsp.
lyrata]
gi|297324932|gb|EFH55352.1| hypothetical protein ARALYDRAFT_901658 [Arabidopsis lyrata subsp.
lyrata]
Length = 345
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 552 ITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYT 611
IT EER L K+G K ++ + +GRRGVF GVI +H HWK E +VI QV
Sbjct: 161 ITGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQVQQY 220
Query: 612 AKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLG 671
A+ L SGG+ +++ II YRGK Y +P + + LSK++A +S Q L
Sbjct: 221 AEELAKLSGGVPVNIIG---DDTIIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKYEQSLE 277
Query: 672 SLK 674
S++
Sbjct: 278 SVR 280
>gi|168020023|ref|XP_001762543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686276|gb|EDQ72666.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 548
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 551 MITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIY 610
++T E+ L K+G K + + +GRRG++ G I+ +H HWK E R+ ++
Sbjct: 224 VLTPEQLYALKKLGYKNKNYVPVGRRGIYGGTIQNMHMHWKKHETVRIDCDNFPKEKIKE 283
Query: 611 TAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRP---LKLMTQNLLSKRQALRRSLEM 667
++L SGGI+I + +G II++RG+NY+RP + ++ +N +KR+AL +S
Sbjct: 284 MGETLERLSGGIVIDI---HQGTTIIMWRGRNYKRPKVDIPIIFKN-FNKRKALIKSKHE 339
Query: 668 QRLGSLK 674
Q +GSLK
Sbjct: 340 QSIGSLK 346
>gi|9279724|dbj|BAB01314.1| unnamed protein product [Arabidopsis thaliana]
Length = 1115
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 100/185 (54%), Gaps = 18/185 (9%)
Query: 517 REFE-LQLEAEIEDLERELRKQERKLL-----------LEQDPDLEMITEEERQCLHKIG 564
+EFE + E +I + R+ RK+E +L+ E D E++T EE K+G
Sbjct: 801 KEFERMTSEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMG 860
Query: 565 MKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILI 624
+K + + +GRRG++ GVI +H HWK + +V+ K +V A L +GGI++
Sbjct: 861 LKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVL 920
Query: 625 SVDKLKEGHAIIIYRGKNY-RRPLKLMTQNL-LSKRQALRRSLEMQRLGSLKFFRIPETA 682
V EG+ II+YRGKNY + P ++M+ + L +++AL +S L +++ + IP
Sbjct: 921 DV---HEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKY-IPRLE 976
Query: 683 GHLQF 687
LQ
Sbjct: 977 QELQL 981
>gi|79417439|ref|NP_189171.2| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
gi|75116513|sp|Q67XL4.1|Y3544_ARATH RecName: Full=Uncharacterized CRM domain-containing protein
At3g25440, chloroplastic; Flags: Precursor
gi|51971805|dbj|BAD44567.1| unknown protein [Arabidopsis thaliana]
gi|332643490|gb|AEE77011.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
Length = 444
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 100/185 (54%), Gaps = 18/185 (9%)
Query: 517 REFE-LQLEAEIEDLERELRKQERKLL-----------LEQDPDLEMITEEERQCLHKIG 564
+EFE + E +I + R+ RK+E +L+ E D E++T EE K+G
Sbjct: 130 KEFERMTSEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMG 189
Query: 565 MKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILI 624
+K + + +GRRG++ GVI +H HWK + +V+ K +V A L +GGI++
Sbjct: 190 LKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVL 249
Query: 625 SVDKLKEGHAIIIYRGKNY-RRPLKLMTQNL-LSKRQALRRSLEMQRLGSLKFFRIPETA 682
V EG+ II+YRGKNY + P ++M+ + L +++AL +S L +++ + IP
Sbjct: 250 DV---HEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKY-IPRLE 305
Query: 683 GHLQF 687
LQ
Sbjct: 306 QELQL 310
>gi|145332683|ref|NP_001078207.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
gi|332643491|gb|AEE77012.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
Length = 380
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 100/185 (54%), Gaps = 18/185 (9%)
Query: 517 REFE-LQLEAEIEDLERELRKQERKLL-----------LEQDPDLEMITEEERQCLHKIG 564
+EFE + E +I + R+ RK+E +L+ E D E++T EE K+G
Sbjct: 66 KEFERMTSEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMG 125
Query: 565 MKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILI 624
+K + + +GRRG++ GVI +H HWK + +V+ K +V A L +GGI++
Sbjct: 126 LKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVL 185
Query: 625 SVDKLKEGHAIIIYRGKNY-RRPLKLMTQNL-LSKRQALRRSLEMQRLGSLKFFRIPETA 682
V EG+ II+YRGKNY + P ++M+ + L +++AL +S L +++ + IP
Sbjct: 186 DV---HEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKY-IPRLE 241
Query: 683 GHLQF 687
LQ
Sbjct: 242 QELQL 246
>gi|224132018|ref|XP_002321235.1| predicted protein [Populus trichocarpa]
gi|222862008|gb|EEE99550.1| predicted protein [Populus trichocarpa]
Length = 413
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 78/133 (58%), Gaps = 5/133 (3%)
Query: 534 LRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYR 593
L+K E K E D E++T EE K+G+K + + +GRRG++ GVI +H HWK
Sbjct: 112 LKKIEPKESSEATHDPEILTPEEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKH 171
Query: 594 EVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRR-PLKLMTQ 652
+ +V+ K +V A L +GGI++ + E + II+YRGKNY + P ++M+
Sbjct: 172 QTLKVVVKTFTPEEVKEIAAELARFTGGIVLDI---HEENTIIMYRGKNYSQPPTEIMSP 228
Query: 653 NL-LSKRQALRRS 664
+ LS+++AL +S
Sbjct: 229 RVTLSRKKALDKS 241
>gi|242055631|ref|XP_002456961.1| hypothetical protein SORBIDRAFT_03g046420 [Sorghum bicolor]
gi|241928936|gb|EES02081.1| hypothetical protein SORBIDRAFT_03g046420 [Sorghum bicolor]
Length = 405
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 70/125 (56%), Gaps = 3/125 (2%)
Query: 552 ITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYT 611
++ EER L K+ K ++ + +GRRGVF GVI +H HWK E +VI K Q+
Sbjct: 173 LSGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEY 232
Query: 612 AKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLG 671
A + SGGI +++ I+ YRGKNY +P + + LSK++AL +S Q L
Sbjct: 233 ANEIARLSGGIPVNIIG---DDTIVFYRGKNYVQPEVMSPIDTLSKKKALEKSKYEQSLE 289
Query: 672 SLKFF 676
+++ F
Sbjct: 290 TVRRF 294
>gi|225448146|ref|XP_002263852.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Vitis vinifera]
Length = 401
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 6/162 (3%)
Query: 528 EDLERELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLH 587
E L L K E K E D E++T EE K+G+K + + +GRRG++ GVI +H
Sbjct: 89 ERLAEALTKIEPKESSETTHDPEILTPEEHFFFLKMGLKCKNYVPIGRRGIYQGVILNMH 148
Query: 588 QHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRR-P 646
HWK + +V+ K +V A L +GGI++ + E + II+YRGKNY + P
Sbjct: 149 LHWKKHQTLQVVVKTFSPEEVKEIAVELARLTGGIVLDI---HEENTIIMYRGKNYSQPP 205
Query: 647 LKLMTQNL-LSKRQALRRSLEMQRLGSLKFFRIPETAGHLQF 687
++M+ + LS+++AL +S L +++ + IP G L+
Sbjct: 206 TEIMSPRITLSRKKALDKSKYRDGLRAVRKY-IPRLEGDLEL 246
>gi|297739537|emb|CBI29719.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 6/162 (3%)
Query: 528 EDLERELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLH 587
E L L K E K E D E++T EE K+G+K + + +GRRG++ GVI +H
Sbjct: 19 ERLAEALTKIEPKESSETTHDPEILTPEEHFFFLKMGLKCKNYVPIGRRGIYQGVILNMH 78
Query: 588 QHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRR-P 646
HWK + +V+ K +V A L +GGI++ + E + II+YRGKNY + P
Sbjct: 79 LHWKKHQTLQVVVKTFSPEEVKEIAVELARLTGGIVLDI---HEENTIIMYRGKNYSQPP 135
Query: 647 LKLMTQNL-LSKRQALRRSLEMQRLGSLKFFRIPETAGHLQF 687
++M+ + LS+++AL +S L +++ + IP G L+
Sbjct: 136 TEIMSPRITLSRKKALDKSKYRDGLRAVRKY-IPRLEGDLEL 176
>gi|356501797|ref|XP_003519710.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 382
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 72/119 (60%), Gaps = 5/119 (4%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E++T EE K+G+K + + +GRRG++ GVI +H HWK + +V+ K +
Sbjct: 114 DPEILTPEEHFFFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEE 173
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRR-PLKLMTQNL-LSKRQALRRS 664
V A L SGGI++ + E + II+YRGKNY + P ++M+ + LS+++AL +S
Sbjct: 174 VKEIATELARLSGGIVLDI---HEDNTIIMYRGKNYSQPPTEIMSPRVSLSRKKALDKS 229
>gi|297831446|ref|XP_002883605.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297329445|gb|EFH59864.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1055
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 88/162 (54%), Gaps = 6/162 (3%)
Query: 528 EDLERELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLH 587
E L ++K E E D E++T EE K+G+K + + +GRRG++ GVI +H
Sbjct: 767 ERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMH 826
Query: 588 QHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY-RRP 646
HWK + +V+ K +V A L +GGI++ V EG+ II+YRGKNY + P
Sbjct: 827 LHWKKHQTLQVVIKTFTPDEVNEIAVELARLTGGIVLDV---HEGNTIIMYRGKNYVQPP 883
Query: 647 LKLMTQNL-LSKRQALRRSLEMQRLGSLKFFRIPETAGHLQF 687
++M+ + L +++AL +S L +++ + IP LQ
Sbjct: 884 TEIMSPRITLPRKKALDKSKCRDALRAVRKY-IPRLEQELQL 924
>gi|357521229|ref|XP_003630903.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355524925|gb|AET05379.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 318
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 10/152 (6%)
Query: 513 KMGNREFELQLEAEIEDLERE-------LRKQERKLLLEQDPDLEMITEEERQCLHKIGM 565
KM + E+++ ++E +R+ LRK + L + D E++TEEER L + G
Sbjct: 141 KMYSPNPEVRIRYKLEKAKRKETWLIEKLRKFDVPKLPTETFDPEILTEEERHYLKRTGE 200
Query: 566 KINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILIS 625
K + +GRRGVF V+ +H HWK E +VI K Q + L S GI+I
Sbjct: 201 KKKHYVPVGRRGVFGEVVLNMHLHWKKHETVKVICKPCKPGQAHEYTEELTRPSKGIVID 260
Query: 626 VDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSK 657
+ K + II YRG+NY +P + + LSK
Sbjct: 261 I---KPNNIIIFYRGRNYVQPKVMSPPDTLSK 289
>gi|356498434|ref|XP_003518057.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like, partial [Glycine max]
Length = 383
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 72/119 (60%), Gaps = 5/119 (4%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E++T EE K+G+K + + +GRRG++ GVI +H HWK + +V+ K +
Sbjct: 94 DPEILTPEEHFFFLKMGLKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEE 153
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRR-PLKLMTQNL-LSKRQALRRS 664
V A L SGGI++ + E + II+YRGKNY + P ++M+ + LS+++AL +S
Sbjct: 154 VKEIAAELARLSGGIVLDI---HEDNTIIMYRGKNYSQPPTEIMSPRVSLSRKKALDKS 209
>gi|255572670|ref|XP_002527268.1| conserved hypothetical protein [Ricinus communis]
gi|223533361|gb|EEF35112.1| conserved hypothetical protein [Ricinus communis]
Length = 458
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 72/119 (60%), Gaps = 5/119 (4%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E++T EE K+G+K + + +GRRG++ GVI +H HWK + +V+ K +
Sbjct: 167 DPEILTPEEHFFFLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTVQVVVKTFSPEE 226
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRR-PLKLMTQNL-LSKRQALRRS 664
V A L +GGI++ + E + II+YRGKNY + P ++M+ + LS+++AL +S
Sbjct: 227 VKEIAAELARLTGGIVLDI---HEENTIIMYRGKNYSQPPTEIMSPRITLSRKKALDKS 282
>gi|226509977|ref|NP_001151028.1| CFM6 [Zea mays]
gi|195643764|gb|ACG41350.1| CFM6 [Zea mays]
gi|238011754|gb|ACR36912.1| unknown [Zea mays]
Length = 394
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 70/125 (56%), Gaps = 3/125 (2%)
Query: 552 ITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYT 611
++ EER L K+ K ++ + +GRRGVF GVI +H HWK E +VI K Q+
Sbjct: 173 LSGEERFYLKKVSQKKSNYVPVGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEY 232
Query: 612 AKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLG 671
A + SGGI ++V I+ YRGK+Y +P + + LSK++AL +S Q L
Sbjct: 233 ANEIARLSGGIPVNVIG---DDTIVFYRGKSYVQPEVMSPVDTLSKKKALEKSKYEQSLE 289
Query: 672 SLKFF 676
+++ F
Sbjct: 290 TVRRF 294
>gi|125590852|gb|EAZ31202.1| hypothetical protein OsJ_15301 [Oryza sativa Japonica Group]
Length = 484
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E++T EE K+G K + + +GRRG++ GVI +H HWK + +VI K +
Sbjct: 175 DPEVLTPEEHFYFLKMGQKSKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPDE 234
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRP 646
V A L SGGI++ + +EG+ II+YRGKNY +P
Sbjct: 235 VKEIASELARLSGGIVLDI---QEGNTIIMYRGKNYAQP 270
>gi|357131757|ref|XP_003567501.1| PREDICTED: uncharacterized protein LOC100829186 [Brachypodium
distachyon]
Length = 402
Score = 75.9 bits (185), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 80/151 (52%), Gaps = 9/151 (5%)
Query: 527 IEDLER-ELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEG 585
IE L+R E+ K E + D + EER L K+ K ++ + +GRRGVF GVI
Sbjct: 154 IEKLKRYEVAKAEGPVAKPDD-----LNGEERFYLKKVSQKKSNYVPIGRRGVFGGVILN 208
Query: 586 LHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRR 645
+H HWK E +VI K Q+ A + SGG+ I++ ++ YRGK+Y +
Sbjct: 209 MHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGVPINI---VGNDTVVFYRGKDYVQ 265
Query: 646 PLKLMTQNLLSKRQALRRSLEMQRLGSLKFF 676
P + + LSK++AL +S Q L +++ F
Sbjct: 266 PDVMSPIDTLSKKKALEKSKYEQSLETVRRF 296
>gi|224095670|ref|XP_002310431.1| predicted protein [Populus trichocarpa]
gi|222853334|gb|EEE90881.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 75.9 bits (185), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 6/135 (4%)
Query: 545 QDPDLE--MITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQ 602
Q P+++ +T EER + K+ K ++ + +GRRGVF GVI +H HWK E +VI
Sbjct: 104 QGPEVKPHELTGEERFFMKKMAQKKSNYVPIGRRGVFGGVILNMHMHWKKHETVKVICNS 163
Query: 603 KLF-AQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQAL 661
QV A+ + SGGI I + +I YRGKNY +P + + LSK++AL
Sbjct: 164 SCKPGQVQEFAQEIARLSGGIPIQIIG---DDTVIFYRGKNYVQPKVMSPVDTLSKKKAL 220
Query: 662 RRSLEMQRLGSLKFF 676
+S Q L +++ F
Sbjct: 221 EKSKYEQSLETVRHF 235
>gi|413946393|gb|AFW79042.1| hypothetical protein ZEAMMB73_840751, partial [Zea mays]
Length = 140
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Query: 425 MQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAIETFH 484
+++LTGG LLLRNKF I++YRGKDFLP V ++ ERE + N EE R I
Sbjct: 5 IKNLTGGTLLLRNKFYIVIYRGKDFLPTSVAAVLAEREELTKDIYNMEEQRRRVLI--TQ 62
Query: 485 LPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLERELRKQERKLLLE 544
D+ L+ + AGTL+EFQ Q+ +G + E++ + + ++ RK E KL +
Sbjct: 63 PSDDGLDGHALAGTLAEFQEAQARWGREVTAKEQEEMKEASSRSEKQKLYRKLEHKLSIA 122
Query: 545 Q 545
Q
Sbjct: 123 Q 123
>gi|449458069|ref|XP_004146770.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
gi|449516505|ref|XP_004165287.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 500
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 5/119 (4%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E++T EE K+G+K + + +GRRG++ GVI +H HWK + +V+ K +
Sbjct: 207 DPEILTPEEHFYFLKMGIKGKNYVPVGRRGIYQGVILNMHLHWKKHQTVKVVVKTFSPEE 266
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRR-PLKLMTQNL-LSKRQALRRS 664
V A L +GG+++ + E II+YRGKNY + P ++M+ + LS+++AL +S
Sbjct: 267 VKEIAAELARLTGGLVLDI---HEEDTIIMYRGKNYSQPPTEIMSPRVSLSRKKALDKS 322
>gi|357439975|ref|XP_003590265.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355479313|gb|AES60516.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 443
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 77/139 (55%), Gaps = 5/139 (3%)
Query: 528 EDLERELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLH 587
E L L+K E E D E++T EE K+G+K + + +GRRG++ GVI +H
Sbjct: 134 ERLREALKKIEPTESSETIHDPEILTPEEHFFFLKMGLKSKNYVPVGRRGIYQGVILNMH 193
Query: 588 QHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRR-P 646
HWK + +V+ K +V A L +GGI++ + E II+YRGKNY + P
Sbjct: 194 LHWKKHQTLQVVVKTFSAEEVKEIATELARLTGGIVLGI---HEEDTIIMYRGKNYSQPP 250
Query: 647 LKLMTQNL-LSKRQALRRS 664
++M+ + L +++AL +S
Sbjct: 251 TEIMSPRVTLPRKKALDKS 269
>gi|357439925|ref|XP_003590240.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355479288|gb|AES60491.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 472
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 528 EDLERELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLH 587
E L L+K E E D E++T EE K+G+K + + +GRRG++ GVI +H
Sbjct: 134 ERLREALKKIEPTESSETIHDPEILTPEEHFFFLKMGLKSKNYVPVGRRGIYQGVILNMH 193
Query: 588 QHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRP 646
HWK + +V+ K +V A L +GGI++ + E II+YRGKNY +P
Sbjct: 194 LHWKKHQTLQVVVKTFSAEEVKEIATELARLTGGIVLGI---HEEDTIIMYRGKNYSQP 249
>gi|356560779|ref|XP_003548665.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized CRM
domain-containing protein At3g25440, chloroplastic-like
[Glycine max]
Length = 273
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 78/135 (57%), Gaps = 10/135 (7%)
Query: 534 LRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYR 593
L+K E E D E++ EE K+G+K +N+ +GRRG++ GVI +H H K
Sbjct: 39 LKKIEPAKSSETTHDPEILXPEEHFFFLKMGLKRKNNVPVGRRGIYQGVILSMHLHXKKH 98
Query: 594 EVARVITKQKLF--AQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRR-PLKLM 650
+ +V+ K F A+V A L SGGI++ + E + II+YRGKNY + P ++M
Sbjct: 99 QTLKVV---KTFSAAEVKEIAAELARLSGGIVLDI---HEDNTIIMYRGKNYSQPPTQIM 152
Query: 651 TQNL-LSKRQALRRS 664
+ + LS+++AL +S
Sbjct: 153 SPRVSLSRKKALDKS 167
>gi|297818350|ref|XP_002877058.1| hypothetical protein ARALYDRAFT_484545 [Arabidopsis lyrata subsp.
lyrata]
gi|297322896|gb|EFH53317.1| hypothetical protein ARALYDRAFT_484545 [Arabidopsis lyrata subsp.
lyrata]
Length = 488
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 75/129 (58%), Gaps = 8/129 (6%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E+ T E+ Q KIG K + + +G RGVF GV++ +H HWK+ E +V +
Sbjct: 88 DPELFTSEQVQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEK 147
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQAL-----R 662
+ A + SGG++I++ +K II++RG+NYR+P L+ N L+KR+AL
Sbjct: 148 IKEMASMIARLSGGVVINIHNVK---TIIMFRGRNYRQPKNLIPVNTLTKRKALFKARFE 204
Query: 663 RSLEMQRLG 671
++LE Q+L
Sbjct: 205 QALESQKLN 213
>gi|15232195|ref|NP_189392.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|11994182|dbj|BAB01285.1| unnamed protein product [Arabidopsis thaliana]
gi|332643815|gb|AEE77336.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 491
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 75/129 (58%), Gaps = 8/129 (6%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E+ T E+ Q KIG K + + +G RGVF GV++ +H HWK+ E +V +
Sbjct: 88 DPELFTSEQVQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEK 147
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQAL-----R 662
+ A + SGG++I++ +K II++RG+NYR+P L+ N L+KR+AL
Sbjct: 148 IKEMASMIARLSGGVVINIHNVK---TIIMFRGRNYRQPKNLIPVNTLTKRKALFKARFE 204
Query: 663 RSLEMQRLG 671
++LE Q+L
Sbjct: 205 QALESQKLN 213
>gi|356513969|ref|XP_003525680.1| PREDICTED: uncharacterized protein LOC100780131 [Glycine max]
Length = 653
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 8/129 (6%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E++T E+ Q KIG + + + +G RGVF GV++ +H HWK+ E +V +
Sbjct: 147 DPELLTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 206
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQAL-----R 662
+ A L SGGI+I+V +K II++RG+NYR+P L+ N L+KR+AL
Sbjct: 207 IKEMASMLARLSGGIVINVHNVK---TIIMFRGRNYRQPKNLIPINTLTKRKALFKARFE 263
Query: 663 RSLEMQRLG 671
++LE Q+L
Sbjct: 264 QALESQKLN 272
>gi|359488800|ref|XP_002272412.2| PREDICTED: uncharacterized protein LOC100254349 [Vitis vinifera]
Length = 666
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 75/128 (58%), Gaps = 3/128 (2%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E++T E+ Q KIG + + + +G RGVF GV++ +H HWK+ E +V +
Sbjct: 130 DPELLTAEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 189
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEM 667
+ A L SGGI+I+V +K II++RG+NYR+P L+ N L+KR+AL ++
Sbjct: 190 IKEMATMLARLSGGIVINVHDVK---TIIMFRGRNYRQPKNLIPINTLTKRKALFKARFE 246
Query: 668 QRLGSLKF 675
Q L S K
Sbjct: 247 QALDSQKL 254
>gi|356573355|ref|XP_003554827.1| PREDICTED: uncharacterized protein LOC100782246 [Glycine max]
Length = 653
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 8/129 (6%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E++T E+ Q KIG + + + +G RGVF GV++ +H HWK+ E +V +
Sbjct: 147 DPELLTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 206
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQAL-----R 662
+ A L SGGI+I+V +K II++RG+NYR+P L+ N L+KR+AL
Sbjct: 207 IKEMASMLARLSGGIVINVHNVK---TIIMFRGRNYRQPKNLIPINTLTKRKALFKARFE 263
Query: 663 RSLEMQRLG 671
++LE Q+L
Sbjct: 264 QALESQKLN 272
>gi|51038196|gb|AAT93999.1| unknow protein [Oryza sativa Japonica Group]
gi|222630175|gb|EEE62307.1| hypothetical protein OsJ_17096 [Oryza sativa Japonica Group]
Length = 560
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E++T E+ Q KIG + + + +G RGVF GV++ +H HWK+ E +V +
Sbjct: 140 DPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEK 199
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEM 667
+ A L SGGI+I++ K II++RG+NYR+P L+ N L+KR+AL ++
Sbjct: 200 IKEMAAMLTRLSGGIVINIHNTK---TIIMFRGRNYRQPKNLIPLNTLTKRKALFKARFE 256
Query: 668 QRLGSLKF 675
Q L S K
Sbjct: 257 QALESQKL 264
>gi|125550822|gb|EAY96531.1| hypothetical protein OsI_18436 [Oryza sativa Indica Group]
Length = 560
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E++T E+ Q KIG + + + +G RGVF GV++ +H HWK+ E +V +
Sbjct: 140 DPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEK 199
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEM 667
+ A L SGGI+I++ K II++RG+NYR+P L+ N L+KR+AL ++
Sbjct: 200 IKEMAAMLTRLSGGIVINIHNTK---TIIMFRGRNYRQPKNLIPLNTLTKRKALFKARFE 256
Query: 668 QRLGSLKF 675
Q L S K
Sbjct: 257 QALESQKL 264
>gi|357134703|ref|XP_003568955.1| PREDICTED: uncharacterized protein LOC100832553 [Brachypodium
distachyon]
Length = 562
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E++T E+ Q KIG + + + +G RGVF GV++ +H HWK+ E +V +
Sbjct: 144 DPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEK 203
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEM 667
+ A L SGGI++++ K II++RG+NYR+P L+ N L+KR+AL ++
Sbjct: 204 IKEMAAMLTRLSGGIVVNIHNTK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARYE 260
Query: 668 QRLGSLKF 675
Q L S K
Sbjct: 261 QALESQKL 268
>gi|255560940|ref|XP_002521483.1| conserved hypothetical protein [Ricinus communis]
gi|223539382|gb|EEF40973.1| conserved hypothetical protein [Ricinus communis]
Length = 745
Score = 65.9 bits (159), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 75/129 (58%), Gaps = 8/129 (6%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E+ T E+ Q KIG + + + +G RGVF GV++ +H HWK+ E +V +
Sbjct: 148 DPELFTSEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 207
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQAL-----R 662
+ A L SGGI+I++ +K II++RG+NYR+P L+ N L+KR+AL
Sbjct: 208 IKEMATMLARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPINTLTKRKALFKARFE 264
Query: 663 RSLEMQRLG 671
++LE Q+L
Sbjct: 265 QALESQKLN 273
>gi|413917671|gb|AFW57603.1| hypothetical protein ZEAMMB73_144408 [Zea mays]
Length = 520
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E++T E+ Q KIG + + + +G RGVF GV++ +H HWK+ E +V +
Sbjct: 132 DPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEK 191
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQAL-----R 662
+ A L SGGI+I++ K II++RG+NYR+P L+ N L+KR+AL
Sbjct: 192 IKEMAAMLTRLSGGIVINIHNTK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFE 248
Query: 663 RSLEMQRL 670
++LE Q+L
Sbjct: 249 QALESQKL 256
>gi|388504790|gb|AFK40461.1| unknown [Medicago truncatula]
Length = 190
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%)
Query: 127 LDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRA 186
L+ E L RL+ +++ + + K+G+T SV+ I W NEL +KF L +NM+ A
Sbjct: 106 LEKEELSRLRTMGIHLKQKISIPKSGLTRSVLQRIHHQWNTNELVKLKFHQQLVQNMNLA 165
Query: 187 REILELKTGGLVIWTKKDAHVVYRG 211
I++ +TGGLVIW VYRG
Sbjct: 166 HNIVQRRTGGLVIWRSGSVMWVYRG 190
>gi|413950005|gb|AFW82654.1| hypothetical protein ZEAMMB73_283519 [Zea mays]
Length = 645
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E++T E+ Q KIG + + + +G RGVF GV++ +H HWK+ E +V +
Sbjct: 129 DPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEK 188
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQAL-----R 662
+ A L SGGI+I++ K II++RG+NYR+P L+ N L+KR+AL
Sbjct: 189 IKEMAAMLTRLSGGIVINIHNTK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFE 245
Query: 663 RSLEMQRL 670
++LE Q+L
Sbjct: 246 QALESQKL 253
>gi|449450187|ref|XP_004142845.1| PREDICTED: uncharacterized protein LOC101215761 [Cucumis sativus]
Length = 619
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 75/128 (58%), Gaps = 3/128 (2%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E++T E+ Q KIG + + + +G RGVF GV++ +H HWK+ E +V +
Sbjct: 145 DPELLTPEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 204
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEM 667
+ A L SGGI++++ +K II++RG+NYR+P L+ N L+KR+AL ++
Sbjct: 205 IKEMATMLARLSGGIVVNIHDVK---TIIMFRGRNYRQPKNLIPINTLTKRKALFKARFE 261
Query: 668 QRLGSLKF 675
Q L S K
Sbjct: 262 QALDSQKL 269
>gi|297604874|ref|NP_001056251.2| Os05g0551900 [Oryza sativa Japonica Group]
gi|255676553|dbj|BAF18165.2| Os05g0551900, partial [Oryza sativa Japonica Group]
Length = 73
Score = 65.1 bits (157), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/52 (61%), Positives = 37/52 (71%), Gaps = 4/52 (7%)
Query: 362 GRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKP 413
GRNR QGLA AI+KLWEKSLV KI VK GI NT+N+ M+ E+K W P
Sbjct: 1 GRNRNHQGLAAAIVKLWEKSLVVKIAVKRGIQNTNNKLMSEEIKV----WTP 48
>gi|449483922|ref|XP_004156733.1| PREDICTED: uncharacterized protein LOC101226279 [Cucumis sativus]
Length = 619
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 75/128 (58%), Gaps = 3/128 (2%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E++T E+ Q KIG + + + +G RGVF GV++ +H HWK+ E +V +
Sbjct: 145 DPELLTPEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 204
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEM 667
+ A L SGGI++++ +K II++RG+NYR+P L+ N L+KR+AL ++
Sbjct: 205 IKEMATMLARLSGGIVVNIHDVK---TIIMFRGRNYRQPKNLIPINTLTKRKALFKARFE 261
Query: 668 QRLGSLKF 675
Q L S K
Sbjct: 262 QALDSQKL 269
>gi|242086871|ref|XP_002439268.1| hypothetical protein SORBIDRAFT_09g003490 [Sorghum bicolor]
gi|241944553|gb|EES17698.1| hypothetical protein SORBIDRAFT_09g003490 [Sorghum bicolor]
Length = 652
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E++T E+ Q KIG + + + +G RGVF GV++ +H HWK+ E +V +
Sbjct: 130 DPELLTAEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEK 189
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQAL-----R 662
+ A L SGGI+I++ K II++RG+NYR+P L+ N L+KR+AL
Sbjct: 190 IKEMAAMLTRLSGGIVINIHNTK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFE 246
Query: 663 RSLEMQRL 670
++LE Q+L
Sbjct: 247 QALESQKL 254
>gi|224055583|ref|XP_002298551.1| predicted protein [Populus trichocarpa]
gi|222845809|gb|EEE83356.1| predicted protein [Populus trichocarpa]
Length = 496
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 76/129 (58%), Gaps = 8/129 (6%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E++T E+ Q KIG + + + +G RGVF GV++ +H HWK+ E +V +
Sbjct: 77 DPELLTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVSCDNFPKEK 136
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQAL-----R 662
+ A + SGGI+++V +K II++RG+NYR+P L+ N L+KR+AL
Sbjct: 137 IKEMATMIARLSGGIVVNVHNVK---TIIMFRGRNYRQPKDLIPLNTLTKRKALFKARFE 193
Query: 663 RSLEMQRLG 671
++LE Q+L
Sbjct: 194 QALESQKLN 202
>gi|296087592|emb|CBI34848.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 68/113 (60%), Gaps = 3/113 (2%)
Query: 548 DLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQ 607
D E++T E+ Q KIG + + + +G RGVF GV++ +H HWK+ E +V +
Sbjct: 145 DPELLTAEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 204
Query: 608 VIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQA 660
+ A L SGGI+I+V +K II++RG+NYR+P L+ N L+KR+A
Sbjct: 205 IKEMATMLARLSGGIVINVHDVK---TIIMFRGRNYRQPKNLIPINTLTKRKA 254
>gi|302766798|ref|XP_002966819.1| hypothetical protein SELMODRAFT_408011 [Selaginella moellendorffii]
gi|300164810|gb|EFJ31418.1| hypothetical protein SELMODRAFT_408011 [Selaginella moellendorffii]
Length = 672
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 11/176 (6%)
Query: 529 DLER-ELRKQERKLLLEQDPDL---EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIE 584
DL R E+R++ L E L E ++E E +IG K + +G+RG++ GVI
Sbjct: 98 DLNRTEIRRKHSSHLTEGKRCLRETEPLSEGEAAHYARIGNKNQNFASVGKRGIYGGVIH 157
Query: 585 GLHQHWKYREVARV-ITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
+H +WK+ E R+ + + L SGGI++ V E +I++RGKNY
Sbjct: 158 NIHTNWKFHETVRIKCPRHNSMEETRRIGAELARLSGGIVLDV---LEDRTVIMFRGKNY 214
Query: 644 RRPLKLMTQNL--LSKRQALRRSLEMQRLGSLKFFRIPETAGHLQFENQTYLPKKA 697
+ P +L L + +R A R +QR + +R+ + F + P +A
Sbjct: 215 QTPEELYPPTLEAVDRRNADSRH-HIQRALDSQVYRLGQYISRYHFLKEDREPAQA 269
>gi|302759655|ref|XP_002963250.1| hypothetical protein SELMODRAFT_404989 [Selaginella moellendorffii]
gi|300168518|gb|EFJ35121.1| hypothetical protein SELMODRAFT_404989 [Selaginella moellendorffii]
Length = 274
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 16/146 (10%)
Query: 511 DLKMGNREFELQLEAEIEDLERELRKQ------ERKLLLEQD-------PDLEMITEEER 557
DL++G R+F + A E+L L+K ++K+L E D D E ++ E
Sbjct: 47 DLQVG-RKFLSEDVATAENLREMLKKTYERIELKKKILQEYDFPEDKPVHDPEYLSPEFM 105
Query: 558 QCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVA 617
L + I+ L +G+RGV++G I ++ HW E R+ + ++ A+ +
Sbjct: 106 TALKERNRCIDDFLTIGKRGVWEGFIRDIYSHWINHETLRIYCEGYPLRKLRPMAEKVAR 165
Query: 618 ESGGILISVDKLKEGHAIIIYRGKNY 643
SG ++I+V +E + I+YRG+N+
Sbjct: 166 MSGAVVIAV--TEETMSFILYRGRNF 189
>gi|356527769|ref|XP_003532480.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine
max]
Length = 723
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T+EE + L K MK L +GR G+ +++ +H HWK R ++ K +
Sbjct: 199 EPLTQEEIRDLVKSCMKAQRQLNIGRDGLTHNMLDNIHAHWKRRRACKIRCKGVCTVDMD 258
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
L +GG +I ++G + ++RG+NY
Sbjct: 259 NVCHQLEERTGGKIIH----RKGGVLYLFRGRNY 288
>gi|115436730|ref|NP_001043122.1| Os01g0495900 [Oryza sativa Japonica Group]
gi|75109409|sp|Q5VMQ5.1|CAF1P_ORYSJ RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|55297418|dbj|BAD69270.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|55297612|dbj|BAD68987.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113532653|dbj|BAF05036.1| Os01g0495900 [Oryza sativa Japonica Group]
gi|215694476|dbj|BAG89423.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222618506|gb|EEE54638.1| hypothetical protein OsJ_01906 [Oryza sativa Japonica Group]
Length = 701
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T+EE L K +K L +GR G+ ++E +H HWK + V ++ K +
Sbjct: 183 EPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMD 242
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
+ L + GG +I +G I ++RG+NY
Sbjct: 243 NVCQQLEEKVGGKVIH----HQGGVIFLFRGRNY 272
>gi|218188278|gb|EEC70705.1| hypothetical protein OsI_02075 [Oryza sativa Indica Group]
Length = 701
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T+EE L K +K L +GR G+ ++E +H HWK + V ++ K +
Sbjct: 183 EPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMD 242
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
+ L + GG +I +G I ++RG+NY
Sbjct: 243 NVCQQLEEKVGGKVIH----HQGGVIFLFRGRNY 272
>gi|242082009|ref|XP_002445773.1| hypothetical protein SORBIDRAFT_07g025550 [Sorghum bicolor]
gi|241942123|gb|EES15268.1| hypothetical protein SORBIDRAFT_07g025550 [Sorghum bicolor]
Length = 674
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T+EE L K +K L +GR G+ ++E +H HWK + V ++ K +
Sbjct: 183 EPLTKEEVFELVKGSLKTKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMD 242
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
+ L + GG +I ++G I ++RG+NY
Sbjct: 243 NICQQLEEKVGGKVIH----RQGGVIFLFRGRNY 272
>gi|224113759|ref|XP_002332503.1| predicted protein [Populus trichocarpa]
gi|222832483|gb|EEE70960.1| predicted protein [Populus trichocarpa]
Length = 699
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 552 ITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYT 611
+T+EE Q L +K L +GR G+ +++ +H HWK R V ++ K +
Sbjct: 248 LTQEEIQELVDGCLKAKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNV 307
Query: 612 AKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
+ L +GG +I ++G + ++RG+NY
Sbjct: 308 CQQLEERTGGKII----YRKGGVLYLFRGRNY 335
Score = 39.7 bits (91), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 43/85 (50%)
Query: 127 LDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRA 186
L E ++ L D K ++ + + + G+T +++ I W+R + +K +MD
Sbjct: 248 LTQEEIQELVDGCLKAKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNV 307
Query: 187 REILELKTGGLVIWTKKDAHVVYRG 211
+ LE +TGG +I+ K ++RG
Sbjct: 308 CQQLEERTGGKIIYRKGGVLYLFRG 332
>gi|357132021|ref|XP_003567631.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like
[Brachypodium distachyon]
Length = 607
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T E + L K M N L +GR G+ ++E +H HW+ +E+ +V + +
Sbjct: 231 EPLTPAEVRALVKPHMSHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMK 290
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
L +SGG +I + G + +YRG+NY
Sbjct: 291 NLCYHLEEKSGGKVIH----RVGGVVFLYRGRNY 320
>gi|162462028|ref|NP_001105220.1| CRS2-associated factor 1, chloroplastic precursor [Zea mays]
gi|75147312|sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|30349367|gb|AAP22135.1| CRS2-associated factor 1 [Zea mays]
Length = 674
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T+EE L K +K L +GR G+ ++E +H HWK + V ++ K +
Sbjct: 183 EPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMD 242
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
L + GG +I ++G I ++RG+NY
Sbjct: 243 NICHQLEEKVGGKVIH----RQGGVIFLFRGRNY 272
>gi|194688996|gb|ACF78582.1| unknown [Zea mays]
gi|194700546|gb|ACF84357.1| unknown [Zea mays]
gi|223974875|gb|ACN31625.1| unknown [Zea mays]
Length = 560
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T+EE L K +K L +GR G+ ++E +H HWK + V ++ K +
Sbjct: 69 EPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMD 128
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
L + GG +I ++G I ++RG+NY
Sbjct: 129 NICHQLEEKVGGKVIH----RQGGVIFLFRGRNY 158
>gi|357520913|ref|XP_003630745.1| CRS2-associated factor [Medicago truncatula]
gi|355524767|gb|AET05221.1| CRS2-associated factor [Medicago truncatula]
Length = 698
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T+EE L + +K + L LGR G +++ +H HWK R V ++ +
Sbjct: 170 EPLTKEEINELVRSTLKSSRQLNLGRDGFIHNMLDNIHAHWKRRRVCKIKCIGVCTVDMD 229
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
+ L ++GG +I + G I ++RG+NY
Sbjct: 230 NVCQQLEEKTGGKVI----YRRGGVIYLFRGRNY 259
>gi|449443167|ref|XP_004139352.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
sativus]
gi|449521361|ref|XP_004167698.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
sativus]
Length = 745
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T+EE + L + + N L +GR G+ ++E +H WK R V ++ K +
Sbjct: 250 EPLTKEEIKALIRGCINSNRQLNIGRDGLTHNMLENIHALWKRRRVCKIKCKGVCTVDMD 309
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
+ L +GG +I G A+ +YRG+NY
Sbjct: 310 NVKQQLEERTGGKII----YSRGGALYLYRGRNY 339
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 144 KWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKK 203
+ + + + G+T +++ I W+R + +K +MD ++ LE +TGG +I+++
Sbjct: 269 RQLNIGRDGLTHNMLENIHALWKRRRVCKIKCKGVCTVDMDNVKQQLEERTGGKIIYSRG 328
Query: 204 DAHVVYRG 211
A +YRG
Sbjct: 329 GALYLYRG 336
>gi|357132246|ref|XP_003567742.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like
[Brachypodium distachyon]
Length = 702
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +++EE L K +K L +GR G+ ++E +H HWK + V ++ K +
Sbjct: 181 EPLSKEEVAELVKGNLKAKRQLNIGRDGLTHNMLENIHAHWKRKRVCKIKCKGVCTVDMD 240
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
+ L GG +I ++G + ++RG+NY
Sbjct: 241 NVCQQLEERVGGKVIH----RQGGVVFLFRGRNY 270
>gi|326525845|dbj|BAJ93099.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 607
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T E + L K M N L +GR G+ ++E +H HW+ +EV +V + +
Sbjct: 230 EPLTSAETRELVKPHMSHNRQLNIGRDGLTHNMLEMIHCHWRRQEVCKVRCRGVPTVDMN 289
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
L +SGG +I + G + +YRG+NY
Sbjct: 290 NLCYHLEEKSGGKVIK----RVGGVVFLYRGRNY 319
>gi|297738777|emb|CBI28022.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +TEEE + L + +K L +GR G+ +++ +H HWK R V ++ K +
Sbjct: 242 EPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMD 301
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
+ L ++GG +I +G + ++RG+NY
Sbjct: 302 NVRQQLEEKTGGKVI----YGKGGVLFLFRGRNY 331
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 141 KMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIW 200
K ++ + + + G+T +++ I W+R + +K +MD R+ LE KTGG VI+
Sbjct: 258 KSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVRQQLEEKTGGKVIY 317
Query: 201 TKKDAHVVYRG 211
K ++RG
Sbjct: 318 GKGGVLFLFRG 328
>gi|225445140|ref|XP_002280611.1| PREDICTED: CRS2-associated factor 1, chloroplastic [Vitis vinifera]
Length = 752
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +TEEE + L + +K L +GR G+ +++ +H HWK R V ++ K +
Sbjct: 242 EPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMD 301
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
+ L ++GG +I +G + ++RG+NY
Sbjct: 302 NVRQQLEEKTGGKVI----YGKGGVLFLFRGRNY 331
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 141 KMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIW 200
K ++ + + + G+T +++ I W+R + +K +MD R+ LE KTGG VI+
Sbjct: 258 KSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVRQQLEEKTGGKVIY 317
Query: 201 TKKDAHVVYRG 211
K ++RG
Sbjct: 318 GKGGVLFLFRG 328
>gi|147799432|emb|CAN76866.1| hypothetical protein VITISV_012308 [Vitis vinifera]
Length = 393
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +TEEE + L + +K L +GR G+ +++ +H HWK R V ++ K +
Sbjct: 242 EPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMD 301
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
+ L ++GG +I +G + ++RG+NY
Sbjct: 302 NVRQQLEEKTGGKVI----YGKGGVLFLFRGRNY 331
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%)
Query: 127 LDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRA 186
L E ++ L K ++ + + + G+T +++ I W+R + +K +MD
Sbjct: 244 LTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNV 303
Query: 187 REILELKTGGLVIWTKKDAHVVYRG 211
R+ LE KTGG VI+ K ++RG
Sbjct: 304 RQQLEEKTGGKVIYGKGGVLFLFRG 328
>gi|255589857|ref|XP_002535109.1| conserved hypothetical protein [Ricinus communis]
gi|223524018|gb|EEF27274.1| conserved hypothetical protein [Ricinus communis]
Length = 748
Score = 47.0 bits (110), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T EE + L + +K L +GR G+ +++ +H HWK R V ++ +
Sbjct: 250 EPLTTEEVKILIEGCLKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCMGVCTVDMD 309
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
+ L +GG +I ++G + ++RG+NY
Sbjct: 310 NVCQQLEERTGGKVI----YRKGGVVYLFRGRNY 339
>gi|168040806|ref|XP_001772884.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675795|gb|EDQ62286.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 463
Score = 46.2 bits (108), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 573 LGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEG 632
LGR G+ ++ +H+HWK R V +V K + + L ++GG +I L++G
Sbjct: 112 LGRDGLTHNMLNLVHEHWKRRRVCKVKCKGVPTVDMDNVCRVLEEKTGGKII----LRQG 167
Query: 633 HAIIIYRGKNY 643
A+ ++RG+NY
Sbjct: 168 GAVYLFRGRNY 178
>gi|115436276|ref|NP_001042896.1| Os01g0323300 [Oryza sativa Japonica Group]
gi|75115027|sp|Q657G7.1|CAF2P_ORYSJ RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|52075771|dbj|BAD44991.1| putative CRS2-associated factor 2 [Oryza sativa Japonica Group]
gi|52076260|dbj|BAD45045.1| putative CRS2-associated factor 2 [Oryza sativa Japonica Group]
gi|113532427|dbj|BAF04810.1| Os01g0323300 [Oryza sativa Japonica Group]
Length = 607
Score = 45.8 bits (107), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T E + L K + N L +GR G+ ++E +H HW+ +E+ +V + +
Sbjct: 228 EPLTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMK 287
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
L +SGG +I + G + +YRG+NY
Sbjct: 288 NLCYHLEEKSGGKVIH----RVGGVVFLYRGRNY 317
>gi|125525663|gb|EAY73777.1| hypothetical protein OsI_01650 [Oryza sativa Indica Group]
Length = 609
Score = 45.8 bits (107), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T E + L K + N L +GR G+ ++E +H HW+ +E+ +V + +
Sbjct: 230 EPLTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMK 289
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
L +SGG +I + G + +YRG+NY
Sbjct: 290 NLCYHLEEKSGGKVIH----RVGGVVFLYRGRNY 319
>gi|222618317|gb|EEE54449.1| hypothetical protein OsJ_01538 [Oryza sativa Japonica Group]
Length = 587
Score = 45.8 bits (107), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T E + L K + N L +GR G+ ++E +H HW+ +E+ +V + +
Sbjct: 208 EPLTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMK 267
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
L +SGG +I + G + +YRG+NY
Sbjct: 268 NLCYHLEEKSGGKVIH----RVGGVVFLYRGRNY 297
>gi|242052829|ref|XP_002455560.1| hypothetical protein SORBIDRAFT_03g013160 [Sorghum bicolor]
gi|241927535|gb|EES00680.1| hypothetical protein SORBIDRAFT_03g013160 [Sorghum bicolor]
Length = 614
Score = 45.8 bits (107), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T E + L K + N L +GR G+ ++E +H HW+ +E+ +V + +
Sbjct: 234 EPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMK 293
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
L +SGG +I + G + +YRG++Y
Sbjct: 294 NLCYHLEEKSGGKVIH----RVGGVVFVYRGRHY 323
>gi|22329751|ref|NP_173754.2| CRS2-associated factor 2 [Arabidopsis thaliana]
gi|75173812|sp|Q9LDA9.1|CAF2P_ARATH RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|8778588|gb|AAF79596.1|AC007945_16 F28C11.4 [Arabidopsis thaliana]
gi|9295699|gb|AAF87005.1|AC005292_14 F26F24.27 [Arabidopsis thaliana]
gi|17065312|gb|AAL32810.1| Unknown protein [Arabidopsis thaliana]
gi|21387129|gb|AAM47968.1| unknown protein [Arabidopsis thaliana]
gi|332192262|gb|AEE30383.1| CRS2-associated factor 2 [Arabidopsis thaliana]
Length = 564
Score = 45.8 bits (107), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 556 ERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSL 615
E+ L K M N + LGR G ++E +H HWK R V +V K + + L
Sbjct: 207 EKGMLIKPHMHDNRQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVL 266
Query: 616 VAESGGILISVDKLKEGHAIIIYRGKNY 643
++GG +I + G + ++RG+NY
Sbjct: 267 EEKTGGEIIH----RVGGVVYLFRGRNY 290
>gi|297850808|ref|XP_002893285.1| hypothetical protein ARALYDRAFT_335585 [Arabidopsis lyrata subsp.
lyrata]
gi|297339127|gb|EFH69544.1| hypothetical protein ARALYDRAFT_335585 [Arabidopsis lyrata subsp.
lyrata]
Length = 565
Score = 45.8 bits (107), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 556 ERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSL 615
E+ L K M N + LGR G ++E +H HWK R V +V K + + L
Sbjct: 209 EKGMLIKPHMHDNRQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMDNVCRVL 268
Query: 616 VAESGGILISVDKLKEGHAIIIYRGKNY 643
++GG +I + G + ++RG+NY
Sbjct: 269 EEKTGGEIIH----RVGGVVYLFRGRNY 292
>gi|194697426|gb|ACF82797.1| unknown [Zea mays]
Length = 611
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T E + L K + N L +GR G+ ++E +H HW+ +E+ +V + +
Sbjct: 232 EPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMK 291
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
L +SGG +I + G + +YRG++Y
Sbjct: 292 NLCYHLEEKSGGKVIH----RVGGVVFLYRGRHY 321
>gi|162464008|ref|NP_001105669.1| CRS2-associated factor 2, chloroplastic precursor [Zea mays]
gi|75147311|sp|Q84N48.1|CAF2P_MAIZE RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|30349369|gb|AAP22136.1| CRS2-associated factor 2 [Zea mays]
gi|414877310|tpg|DAA54441.1| TPA: crs2 associated factor2 [Zea mays]
Length = 611
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T E + L K + N L +GR G+ ++E +H HW+ +E+ +V + +
Sbjct: 232 EPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMK 291
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
L +SGG +I + G + +YRG++Y
Sbjct: 292 NLCYHLEEKSGGKVIH----RVGGVVFLYRGRHY 321
>gi|413918581|gb|AFW58513.1| hypothetical protein ZEAMMB73_947708, partial [Zea mays]
Length = 208
Score = 45.4 bits (106), Expect = 0.11, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 121 TKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLC 180
+ AE L + L RL+ ++RK +KV KAG+TE +V I WR E+ ++ +
Sbjct: 137 SAAELALPRDELRRLQGIGIRVRKRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWA 196
Query: 181 RNMDRAREILEL 192
NM R EILE+
Sbjct: 197 MNMRRTHEILEV 208
>gi|356560247|ref|XP_003548405.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like [Glycine
max]
Length = 396
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 528 EDLERELRKQERKLLLEQDPDLEMITEEERQCLHKI--GMKINSNLLLGRRGVFDGVIEG 585
ED + E ++++++ +++ P ++ EER+ L K N ++ LGR G+ ++
Sbjct: 139 EDPKLEEQRKKKREMIQGKP----LSSEERKALVSQFERSKTNRHVNLGRDGLTHNMLNV 194
Query: 586 LHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY-- 643
+H HWK+ E R+ + L ++ G +I + G +I+YRG+NY
Sbjct: 195 IHNHWKFAEAVRIKCMGVPTMDMNNICTQLEDKTFGKVI----FRHGGTLILYRGRNYNP 250
Query: 644 -RRPL 647
+RP+
Sbjct: 251 KKRPV 255
>gi|18399222|ref|NP_565462.1| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|75266026|sp|Q9SL79.2|CAF1P_ARATH RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|15028051|gb|AAK76556.1| unknown protein [Arabidopsis thaliana]
gi|20197570|gb|AAD24394.2| expressed protein [Arabidopsis thaliana]
gi|28393847|gb|AAO42331.1| unknown protein [Arabidopsis thaliana]
gi|330251862|gb|AEC06956.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 701
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T+EE + L +K L +GR G+ ++ +H WK R V ++ K +
Sbjct: 241 EPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMD 300
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
+ L + GG +I + G + ++RG+NY
Sbjct: 301 NVCEQLEEKIGGKVI----YRRGGVLFLFRGRNY 330
>gi|357144801|ref|XP_003573418.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like
[Brachypodium distachyon]
Length = 437
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 573 LGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEG 632
LGR G+ ++ +H HWK+ E RV + L ++GG++I + G
Sbjct: 181 LGRDGLTHNMLNDIHNHWKHGEAVRVKCLGVPTVDMQNVCHELEDKTGGLIIH----RHG 236
Query: 633 HAIIIYRGKNY---RRPL 647
+I+YRG++Y +RP+
Sbjct: 237 GQLILYRGRHYHPKKRPV 254
>gi|225453847|ref|XP_002272563.1| PREDICTED: CRS2-associated factor 1, mitochondrial [Vitis vinifera]
gi|296089125|emb|CBI38828.3| unnamed protein product [Vitis vinifera]
Length = 418
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 17/107 (15%)
Query: 550 EMITEEERQCL------HKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQK 603
E +T ER+ L H+ +IN LGR G+ ++ +H HWK+ E R+
Sbjct: 162 EPLTAAERKILVEKCQRHRTKRQIN----LGRDGLTHNMLNDIHNHWKHAEAVRIKCMGV 217
Query: 604 LFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY---RRPL 647
+ L ++ G +I ++G +++YRG+NY +RP+
Sbjct: 218 PTVDMKNVCTQLEDKTSGKVIH----RQGGLLVLYRGRNYHPKKRPV 260
>gi|297836246|ref|XP_002886005.1| hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp.
lyrata]
gi|297331845|gb|EFH62264.1| hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp.
lyrata]
Length = 700
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T+EE + L +K L +GR G+ ++ +H WK R V ++ K +
Sbjct: 241 EPLTKEEIRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMD 300
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
+ L + GG +I + G + ++RG+NY
Sbjct: 301 KVCEQLEEKIGGKVI----YRRGGVLFLFRGRNY 330
>gi|356495236|ref|XP_003516485.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine
max]
Length = 705
Score = 42.4 bits (98), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T++E L K K + L +GR G+ ++E +H +W R ++ + +
Sbjct: 237 EPLTKDEINRLIKATEKSSRQLNIGRDGLTHNMLENIHTYWMRRSACKIKCRGVCTVDMD 296
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
+ L +GG +I ++ + ++RGKNY
Sbjct: 297 NVCQQLEERTGGKII----YRQAGTVYLFRGKNY 326
>gi|452748711|ref|ZP_21948488.1| transcriptional regulator [Pseudomonas stutzeri NF13]
gi|452007433|gb|EMD99688.1| transcriptional regulator [Pseudomonas stutzeri NF13]
Length = 302
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 91/219 (41%), Gaps = 25/219 (11%)
Query: 473 EGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLER 532
+G L I TF + S A L Q+ S + N E EL L+ R
Sbjct: 3 DGMTLDQIRTFVTVADSGSFRSGAARLLRVQSAISH----AIANLEMELGLQLFDRSGYR 58
Query: 533 ELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKY 592
+ QE + LL D+ + + R H +G + L L V++ L +
Sbjct: 59 PVLTQEGQALLAHARDILLRADAMRARAHALGAGVELELTL--------VVDTL---FPI 107
Query: 593 REVARVITKQKLFAQVIYTAKSLVAES---GGILISVDKLKEGHAIIIYRGKNYRRP-LK 648
VA+ IT+ A V + + S +S GG + ++D+ + AII+ G+++ P L
Sbjct: 108 ESVAQAITR----ASVDFPSTSFRLDSQALGGPIAALDERRCTLAIIV--GEDFHNPRLA 161
Query: 649 LMTQNLLSKRQALRRSLEMQRLGSLKFFRIPETAGHLQF 687
L + + +R + LGS +P+ AGHLQ
Sbjct: 162 LEAIGSIGQIAVIRSDHPLAELGSRAPLGVPDLAGHLQI 200
>gi|359473240|ref|XP_003631275.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Vitis vinifera]
Length = 560
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +++ E + L K + N + LGR G+ ++E +H HWK + V +V K +
Sbjct: 194 EPLSKAEIRMLVKPYLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVWCKGVPTIDMD 253
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
L ++GG +I + G + ++RG+NY
Sbjct: 254 NVCHHLEEKTGGKIIH----RVGGVVYLFRGRNY 283
>gi|168045030|ref|XP_001774982.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673729|gb|EDQ60248.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 295
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 566 KINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILIS 625
K + L LGR G ++ +H +WK R+V R+ K + L ++GG +IS
Sbjct: 105 KEDRQLNLGRDGFTHNMLASVHDYWKRRQVVRIKCKGVPTVDMDNVCTVLEDKTGGKIIS 164
Query: 626 VDKLKEGHAIIIYRGKNY 643
+ G + ++RG+NY
Sbjct: 165 ----RAGGVVYLFRGRNY 178
>gi|225425575|ref|XP_002267079.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Vitis vinifera]
gi|297739063|emb|CBI28552.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +++ E + L K + N + LGR G+ ++E +H HWK + V +V K +
Sbjct: 194 EPLSKAEIRMLVKPYLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTIDMD 253
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
L ++GG +I + G + ++RG+NY
Sbjct: 254 NVCHHLEEKTGGKIIH----RVGGVVYLFRGRNY 283
>gi|224110940|ref|XP_002315689.1| predicted protein [Populus trichocarpa]
gi|222864729|gb|EEF01860.1| predicted protein [Populus trichocarpa]
Length = 506
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 556 ERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSL 615
E + L K + N + LG G+ ++E +H HWK R V +V K + + L
Sbjct: 146 EIKLLIKPHLSDNRQVNLGEDGLTHNMLELVHSHWKRRRVCKVRCKGVPTVDMDNVCRHL 205
Query: 616 VAESGGILISVDKLKEGHAIIIYRGKNY 643
++GG +I + G + ++RG+NY
Sbjct: 206 EEKTGGKIIH----RVGGVVYLFRGRNY 229
>gi|326525102|dbj|BAK07821.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 443
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 573 LGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEG 632
LGR G+ ++ +H HWK+ E RV + L ++GG++I + G
Sbjct: 186 LGRDGLTHNMLNDIHNHWKHGEGVRVKCLGVPTVDMQNVCHELEDKTGGLIIH----RHG 241
Query: 633 HAIIIYRGKNY---RRPL 647
+I+YRG++Y +RP+
Sbjct: 242 GQLILYRGRHYHPKKRPV 259
>gi|115475027|ref|NP_001061110.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|75133775|sp|Q6Z4U2.1|CAF1M_ORYSJ RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:
Precursor
gi|40253285|dbj|BAD05220.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|40253602|dbj|BAD05547.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113623079|dbj|BAF23024.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|125560323|gb|EAZ05771.1| hypothetical protein OsI_28005 [Oryza sativa Indica Group]
Length = 428
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 573 LGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEG 632
LGR G+ ++ +H HWK E RV + L ++GG++I + G
Sbjct: 180 LGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIH----RHG 235
Query: 633 HAIIIYRGKNY---RRPL 647
+I+YRG++Y +RP+
Sbjct: 236 GQLILYRGRHYNPKKRPV 253
>gi|297739073|emb|CBI28562.3| unnamed protein product [Vitis vinifera]
Length = 422
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +++ E + L K + N + LGR G+ ++E +H HWK + V +V K +
Sbjct: 61 EPLSKAEIRMLVKPYLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVWCKGVPTIDMD 120
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYR 644
L ++GG +I + G + ++RG+NY
Sbjct: 121 NVCHHLEEKTGGKIIH----RVGGVVYLFRGRNYN 151
>gi|125602364|gb|EAZ41689.1| hypothetical protein OsJ_26223 [Oryza sativa Japonica Group]
Length = 615
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 573 LGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEG 632
LGR G+ ++ +H HWK E RV + L ++GG++I + G
Sbjct: 156 LGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIH----RHG 211
Query: 633 HAIIIYRGKNY---RRPL 647
+I+YRG++Y +RP+
Sbjct: 212 GQLILYRGRHYNPKKRPV 229
>gi|356530475|ref|XP_003533806.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Glycine
max]
Length = 388
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 10/97 (10%)
Query: 129 GELLERLK--DEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVK-FDVPLCRNMDR 185
EL+ER + D AR+ + + K GVT +++ +I W++ E+ +K VP +MD
Sbjct: 148 AELIERYRHSDCARQ----INLGKGGVTHNMLGDIHNHWKKAEVVRIKCLGVPTL-DMDN 202
Query: 186 AREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCP 222
LE K+GG VI+ + ++YRG + K CP
Sbjct: 203 VCFHLEDKSGGKVIYRNINILLLYRGRNYDT--KNCP 237
>gi|356524038|ref|XP_003530640.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like [Glycine
max]
Length = 593
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E + + E L K M N + LGR G+ ++E +H HWK R V ++ +
Sbjct: 195 EPLKKWEIHMLVKPMMSYNRQVNLGRDGLTHNMLELIHSHWKRRRVCKIRCLGVPTVDMD 254
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
+ ++GG +I + G + ++RG+NY
Sbjct: 255 NVCHHIEEKTGGKIIH----RVGGVVYLFRGRNY 284
>gi|171682614|ref|XP_001906250.1| hypothetical protein [Podospora anserina S mat+]
gi|170941266|emb|CAP66916.1| unnamed protein product [Podospora anserina S mat+]
Length = 381
Score = 40.0 bits (92), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 12/80 (15%)
Query: 95 GGFGGKVPWLRE-DRFVF---RRMKKER--MVTKAETMLDGELLERLKDEARKMRKWVKV 148
GG GG + RE D V R + +ER M+ +AE L+ +ER+++E K +V
Sbjct: 252 GGSGG---YARELDEVVGWLGRELNREREDMIARAEAFLE---IERVEEEQMKKEDRERV 305
Query: 149 KKAGVTESVVFEIRLAWRRN 168
++ VTE VF++R +WRRN
Sbjct: 306 ERGEVTEEEVFKMRTSWRRN 325
>gi|406835706|ref|ZP_11095300.1| hypothetical protein SpalD1_28824 [Schlesneria paludicola DSM
18645]
Length = 849
Score = 40.0 bits (92), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 512 LKMGNREFELQLEAEIEDLERELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSNL 571
++MG E Q+ AEI LE+EL+ ++ + +Q +++TE++++ L +K +L
Sbjct: 383 IRMGEPERAAQIRAEISRLEQELKDRDADIAADQTAWEKLLTEDDKKKL-PYNIKNAVDL 441
Query: 572 LLGRRG---------VFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGI 622
++ R F G+ + +H + E++R+ + FA + T +S I
Sbjct: 442 VVADRSDVHKRDLSNYFRGLPQAREKHPQLNEISRLRDLEPKFAVTMITRESAAPRETHI 501
Query: 623 LISVDKLKEG 632
+ D L++G
Sbjct: 502 HVRGDFLRQG 511
>gi|307135966|gb|ADN33825.1| RNA splicing factor [Cucumis melo subsp. melo]
Length = 603
Score = 39.7 bits (91), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 556 ERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSL 615
E + L K + N + LGR G+ ++E +H HWK + V +V K + +
Sbjct: 246 EIRMLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHI 305
Query: 616 VAESGGILISVDKLKEGHAIIIYRGKNY 643
++GG +I + G + ++RG+NY
Sbjct: 306 EEKTGGKIIH----RVGGVLYLFRGRNY 329
>gi|449478585|ref|XP_004155360.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Cucumis sativus]
Length = 603
Score = 39.7 bits (91), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 556 ERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSL 615
E + L K + N + LGR G+ ++E +H HWK + V +V K + +
Sbjct: 246 EIRMLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHI 305
Query: 616 VAESGGILISVDKLKEGHAIIIYRGKNY 643
++GG +I + G + ++RG+NY
Sbjct: 306 EEKTGGKIIH----RVGGVLYLFRGRNY 329
>gi|449434945|ref|XP_004135256.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Cucumis sativus]
Length = 602
Score = 39.7 bits (91), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 556 ERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSL 615
E + L K + N + LGR G+ ++E +H HWK + V +V K + +
Sbjct: 245 EIRMLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHI 304
Query: 616 VAESGGILISVDKLKEGHAIIIYRGKNY 643
++GG +I + G + ++RG+NY
Sbjct: 305 EEKTGGKIIH----RVGGVLYLFRGRNY 328
>gi|255568848|ref|XP_002525395.1| conserved hypothetical protein [Ricinus communis]
gi|223535358|gb|EEF37033.1| conserved hypothetical protein [Ricinus communis]
Length = 561
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 511 DLKMGNREFELQLEAEIEDLERELRKQERKLLLEQDPDLEMITEEERQCLHKIGMKINSN 570
D K G + FE+ + + E+ K R++L + +T E + L K + N
Sbjct: 158 DAKEGVKYFEMPGDLQFGKFPEEV-KSRREILGKP------LTRWEIKQLVKPLLSDNRQ 210
Query: 571 LLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLK 630
+ LGR G+ ++E +H HW+ V +V K + + L +GG +I +
Sbjct: 211 VNLGRDGLTHNMLELIHSHWRRSPVCKVRCKGIPTVDMNNICRHLEERTGGKII----YR 266
Query: 631 EGHAIIIYRGKNY 643
G + ++ G+NY
Sbjct: 267 IGGVVYLFCGRNY 279
>gi|358374010|dbj|GAA90605.1| sodium P-type ATPase [Aspergillus kawachii IFO 4308]
Length = 1081
Score = 39.3 bits (90), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/127 (18%), Positives = 58/127 (45%), Gaps = 4/127 (3%)
Query: 394 NTDNEQMANELKASLAKWKPNFKFSDDGV----LLMQHLTGGVLLLRNKFLIILYRGKDF 449
N++ E K+ L KW PN D+G+ ++++ + ++L+ + + + + +
Sbjct: 37 NSEEGLSTQEAKSRLQKWGPNELEGDEGISLAKIIIRQVANAMMLVLIIAMAVSFGIESW 96
Query: 450 LPCGVENLIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDF 509
+ GV ++ + + Q++ + ++ P + + K GT+ + + D
Sbjct: 97 IEGGVIGAVIALNIIVGVYQDYAAEKTMDSLRGLSSPTGVVTRDGKTGTIPAMEIVVGDM 156
Query: 510 GDLKMGN 516
DLK+G+
Sbjct: 157 VDLKVGD 163
>gi|159469243|ref|XP_001692777.1| predicted protein [Chlamydomonas reinhardtii]
gi|158278030|gb|EDP03796.1| predicted protein [Chlamydomonas reinhardtii]
Length = 321
Score = 39.3 bits (90), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 146 VKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREI---LELKTGGLVIWTK 202
V++ +G+ SV+ + AWR +EL ++ + M ++ LE +TGGLV+W
Sbjct: 139 VRLGPSGLNASVLTSVASAWRNSELVKLRIVSRANKYMPYITQVCAALEQRTGGLVVWRA 198
Query: 203 KDAHVVYRGDG 213
+ ++RG G
Sbjct: 199 GGSIWLFRGAG 209
>gi|295656891|ref|XP_002789025.1| nuclear distribution protein nudE [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226285054|gb|EEH40620.1| nuclear distribution protein nudE [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 587
Score = 38.9 bits (89), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 9/66 (13%)
Query: 485 LPDEPLEKTSKAGTL---------SEFQNIQSDFGDLKMGNREFELQLEAEIEDLERELR 535
LPDEPL + T S+++ ++++ D + +RE E++LE +IE E+ R
Sbjct: 3 LPDEPLSSPPNSSTSAQDAIAYYKSQYEQLEAELADFQSSSRELEVELEKDIEASEKRER 62
Query: 536 KQERKL 541
K + KL
Sbjct: 63 KLKEKL 68
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,619,402,278
Number of Sequences: 23463169
Number of extensions: 501528785
Number of successful extensions: 1460073
Number of sequences better than 100.0: 352
Number of HSP's better than 100.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 143
Number of HSP's that attempted gapping in prelim test: 1458181
Number of HSP's gapped (non-prelim): 1127
length of query: 744
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 594
effective length of database: 8,839,720,017
effective search space: 5250793690098
effective search space used: 5250793690098
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (35.8 bits)