BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041729
(744 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os08g0360100 PE=2 SV=1
Length = 725
Score = 496 bits (1277), Expect = e-139, Method: Compositional matrix adjust.
Identities = 283/608 (46%), Positives = 363/608 (59%), Gaps = 64/608 (10%)
Query: 96 GFGGKVPWL----REDRFVFRRMKKERMVTKAETMLDGELLERLKDEARKMRKWVKVKKA 151
G VPW E + V RR KK R+ T+AET L+ LERL+ AR +W + KKA
Sbjct: 120 GIRRAVPWAAARDEETKVVLRREKKTRVPTRAETELEAGELERLRRAARGKERWARAKKA 179
Query: 152 GVTESVVFEIRLAWRR-NELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYR 210
G+T+ VV E+R W + ELA V+ PL R MDRAREILE+KTGGLV+WT+ H VYR
Sbjct: 180 GITDEVVEEVRGQWAKGQELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYR 239
Query: 211 GDGSKSSVKMCPRSADDQEAPLSKSTHLHLEKKVNVSWIKSNTATLDQNRSLKDGEENSL 270
G S ++ R D + +S + SN T KD +
Sbjct: 240 GS---SYLENAKRHRD------------FVNYNEELSPVTSNNPTSQGKYWSKDETLTND 284
Query: 271 PTSIFMDKNLRIDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFR 330
+ I +LYERE +RLLD LGPRF+DWW PLPVD DLLPEVVP FK PFR
Sbjct: 285 NDEADDKDDKPIKGTLYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPEVVPDFKTPFR 344
Query: 331 LSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKW 390
PP R L D+ELTYLRK A PLPTHFVLGRN LQGLA AILKLWEKSL+AK+ VK
Sbjct: 345 QCPPGVRPALADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKV 404
Query: 391 GIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFL 450
GI NT++EQMA LK LTGG ++LRNK II+YRGKDFL
Sbjct: 405 GIQNTNHEQMARNLK---------------------RLTGGTVILRNKDYIIIYRGKDFL 443
Query: 451 PCGVENLIVERERELQICQNHEEGARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFG 510
P GV ++ERE ++ Q EE ARLK ++ + + S GT E+Q+
Sbjct: 444 PGGVAESVIERESQVHDQQAKEEEARLKMADSLQMIVGLSSERSYVGTFREYQDFHDSHA 503
Query: 511 DLKMGNREFELQLEAEIEDLERELRKQERKLLL----------------------EQDPD 548
N F +QLEA+ LE+EL+ QE +L + ++D D
Sbjct: 504 RRTTEN-NFRIQLEAKKHRLEKELKDQEWRLSMLTKKIERSNQVLAKLHSSWSPSKKDGD 562
Query: 549 LEMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQV 608
E++TEEER+ KIG+K++ ++LLGRRGVF+GVIE +HQHWK++EV +VITKQ +Q+
Sbjct: 563 RELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQI 622
Query: 609 IYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYRRPLKLMTQNLLSKRQALRRSLEMQ 668
YT+ L E+GG LI++++ HAII+YRGKNYRRP K NLL+KR+AL+RS+E+Q
Sbjct: 623 TYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKSAPSNLLTKREALQRSIEVQ 682
Query: 669 RLGSLKFF 676
R GS+K+F
Sbjct: 683 RRGSMKYF 690
>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1
Length = 715
Score = 489 bits (1260), Expect = e-137, Method: Compositional matrix adjust.
Identities = 307/698 (43%), Positives = 392/698 (56%), Gaps = 98/698 (14%)
Query: 18 IIKPSKPKTKKSFKKTDKGLTAKESGVRGKQAMKKIIENIEKLQKDQILDETQKKVMEKF 77
I P +K+ K K LTA G R +A+ II + L+
Sbjct: 50 IDSPKPAPARKNTKTAAKPLTAGVPGGRTHRAVLGIIRRVRSLELSDAPSPNSVHTSNSG 109
Query: 78 EFKGCFE------------ENVSHEEDLRGGFGGKVPWL--RED--RFVFRRMKKERMVT 121
F + V +E R VPW R++ + RR KK R T
Sbjct: 110 AAAAAFHLTIELSPPREPGQYVVEKEKSRA-----VPWAAARDEGLKVALRREKKPREPT 164
Query: 122 KAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNE-LAMVKFDVPLC 180
+AET L+ L RL+ AR + +W + KKAGVT+ VV E+R W E LA V+ PL
Sbjct: 165 RAETELETHELRRLRRLARGIGRWARAKKAGVTDEVVKEVRREWASGEELAAVRIVEPLR 224
Query: 181 RNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSSVKMCPRSADDQEAPLSKSTHLHL 240
R+MDRAREILE+KTGGLV+WTK D H VYRG + + +K +H L
Sbjct: 225 RSMDRAREILEIKTGGLVVWTKGDMHFVYRGSKYQQN---------------AKHSHTFL 269
Query: 241 EKKVNVSWIKSNTATLDQNRSLKDGEENSLPTSIFMDKNLRIDKSLYEREGDRLLDGLGP 300
+ + A + ++S+ G+++ P + +LYERE +RLLD LGP
Sbjct: 270 TN------VHKDDAFQENDQSI-CGQKDEEP----------VKGTLYEREVNRLLDTLGP 312
Query: 301 RFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFV 360
RFVDWW PLPVD DLLPE VPG K P+RL PP R L D+ELTYLRKLA LPTHF
Sbjct: 313 RFVDWWWDTPLPVDADLLPEFVPGSKTPYRLCPPGVRPTLADEELTYLRKLARLLPTHFA 372
Query: 361 LGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKWKPNFKFSDD 420
LGRN LQGLA AILKLWEKSL+AKI VK GI NT+NEQMA LK
Sbjct: 373 LGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNLK--------------- 417
Query: 421 GVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEEGARLKAI 480
HLTGG ++LRNK IILYRGKDFLP GV +++RE ++ Q EE ARLKA+
Sbjct: 418 ------HLTGGTVILRNKDFIILYRGKDFLPGGVAQTVIQREAQVHDEQVKEEEARLKAV 471
Query: 481 ETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLERELRKQERK 540
++ + E L + S GT E+Q + F N ++LEAE LE+EL+ E K
Sbjct: 472 DSLQMVGE-LSEESSLGTFREYQGFHAKFVHENTENSNTMIELEAEKYRLEKELKDHEWK 530
Query: 541 LLL----------------------EQDPDLEMITEEERQCLHKIGMKINSNLLLGRRGV 578
L + EQ D E +TEEE+ +IG K++ +LLGRRG+
Sbjct: 531 LSVLNKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRRGI 590
Query: 579 FDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIY 638
FDGVIE +HQHWK++EV +VITKQ Q++Y A L E+GGILI+V+KL HAII+Y
Sbjct: 591 FDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAIILY 650
Query: 639 RGKNYRRPLKLMTQNLLSKRQALRRSLEMQRLGSLKFF 676
RGKNYRRP K NLL+KR+ALRRS+E+QR GS+K+F
Sbjct: 651 RGKNYRRPAKSSFSNLLTKREALRRSIEVQRRGSMKYF 688
>sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2
SV=2
Length = 720
Score = 461 bits (1187), Expect = e-129, Method: Compositional matrix adjust.
Identities = 239/420 (56%), Positives = 302/420 (71%), Gaps = 50/420 (11%)
Query: 282 IDKSLYEREGDRLLDGLGPRFVDWWMWKPLPVDGDLLPEVVPGFKPPFRLSPPDARSKLT 341
I SLYERE DRLLDGLGPR++DWWM +P PVD DLLPEVV G+ P R PP+ R+KLT
Sbjct: 303 ISSSLYEREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLT 362
Query: 342 DDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMA 401
D+ELTYLR +A PLP HFVLGRN GLQGLA+AI+KLWEK ++AKI +KWG NT+NE+MA
Sbjct: 363 DEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMA 422
Query: 402 NELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVER 461
+EL+ +LTGGVL+LRNK+LI+LYRGKDFL V +L+ +R
Sbjct: 423 DELR---------------------YLTGGVLILRNKYLIVLYRGKDFLSDEVADLVEDR 461
Query: 462 ERELQICQNHEEGARLKAIETFHLPD--EPLEKTSKAGTLSEFQNIQSDFGDLKMGNREF 519
ER L Q+ EE R IE + + L++T+K+GTL EFQ +Q FG++ N
Sbjct: 462 ERLLSRYQHFEETKRESDIELLEVVTNGKQLKETNKSGTLLEFQELQRKFGEMDPRN--- 518
Query: 520 ELQLEAEIEDLERELRKQERKLLL----------------------EQDPDLEMITEEER 557
L+ EAE LE+EL+ QE KL + E D D+E++T EER
Sbjct: 519 -LETEAEKARLEKELKSQEHKLSILKSKIEKSNMELFKLNSLWKPSEGDDDIEILTNEER 577
Query: 558 QCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVA 617
+CL +IG+K+NS+L+LGRRGVF GV+EGLHQHWK+REVA+VIT QKLF++V+YTAK+L
Sbjct: 578 ECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYTAKALET 637
Query: 618 ESGGILISVDKLKEGHAIIIYRGKNYRRP-LKLMTQNLLSKRQALRRSLEMQRLGSLKFF 676
ES G+LIS++KLKEGHAI+IYRGKNY+RP KLM QNLL+KR+AL+RS+ MQRLGSLKFF
Sbjct: 638 ESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRKALQRSVVMQRLGSLKFF 697
Score = 234 bits (597), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 125/219 (57%), Positives = 162/219 (73%), Gaps = 6/219 (2%)
Query: 1 MPTAPWMRSPIVLQPDEIIKPSK-PKTKKSFKKTDKGLTAKESGVRGKQAMKKIIENIEK 59
+PTAPWM+ P++L+PDEI+ K K +K +KT K L +ESGVRGK+AMKKI+ N+EK
Sbjct: 83 VPTAPWMKGPLLLRPDEILDTKKRNKPRKVEEKTFKALNRRESGVRGKKAMKKIVRNVEK 142
Query: 60 LQKDQILDETQKKVMEKFEFKGCFEENVSHEEDLRGGFGGKVPWLRED-RFVFRRMKKER 118
L +D +ETQ + +FE+ G EE V ++ FGGK+PW RE+ RF+ RRMKKE
Sbjct: 143 LDEDSDSEETQMDDLSEFEYLGRIEEKVESKDR----FGGKMPWEREEERFILRRMKKES 198
Query: 119 MVTKAETMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVP 178
+ T AE +LD LL RL+ EA KMRKWV V+KAGVTE VV +I+ W+ NELAMV+FDVP
Sbjct: 199 VPTTAELILDEGLLNRLRREASKMRKWVNVRKAGVTELVVNKIKSMWKLNELAMVRFDVP 258
Query: 179 LCRNMDRAREILELKTGGLVIWTKKDAHVVYRGDGSKSS 217
LCRNM+RA+EI+E+KTGGLV+ +KK+ VVYRG S SS
Sbjct: 259 LCRNMERAQEIIEMKTGGLVVLSKKEFLVVYRGGPSYSS 297
>sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440,
chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2
SV=1
Length = 444
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 100/185 (54%), Gaps = 18/185 (9%)
Query: 517 REFE-LQLEAEIEDLERELRKQERKLL-----------LEQDPDLEMITEEERQCLHKIG 564
+EFE + E +I + R+ RK+E +L+ E D E++T EE K+G
Sbjct: 130 KEFERMTSEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMG 189
Query: 565 MKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILI 624
+K + + +GRRG++ GVI +H HWK + +V+ K +V A L +GGI++
Sbjct: 190 LKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVL 249
Query: 625 SVDKLKEGHAIIIYRGKNY-RRPLKLMTQNL-LSKRQALRRSLEMQRLGSLKFFRIPETA 682
V EG+ II+YRGKNY + P ++M+ + L +++AL +S L +++ + IP
Sbjct: 250 DV---HEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKY-IPRLE 305
Query: 683 GHLQF 687
LQ
Sbjct: 306 QELQL 310
>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0495900 PE=2 SV=1
Length = 701
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T+EE L K +K L +GR G+ ++E +H HWK + V ++ K +
Sbjct: 183 EPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMD 242
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
+ L + GG +I +G I ++RG+NY
Sbjct: 243 NVCQQLEEKVGGKVIH----HQGGVIFLFRGRNY 272
Score = 34.7 bits (78), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%)
Query: 127 LDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRA 186
L E ++ L K ++ + + + G+T +++ I W+R + +K +MD
Sbjct: 185 LTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNV 244
Query: 187 REILELKTGGLVIWTKKDAHVVYRG 211
+ LE K GG VI + ++RG
Sbjct: 245 CQQLEEKVGGKVIHHQGGVIFLFRG 269
>sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1
SV=1
Length = 674
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T+EE L K +K L +GR G+ ++E +H HWK + V ++ K +
Sbjct: 183 EPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMD 242
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
L + GG +I ++G I ++RG+NY
Sbjct: 243 NICHQLEEKVGGKVIH----RQGGVIFLFRGRNY 272
>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0323300 PE=2 SV=1
Length = 607
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T E + L K + N L +GR G+ ++E +H HW+ +E+ +V + +
Sbjct: 228 EPLTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMK 287
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
L +SGG +I + G + +YRG+NY
Sbjct: 288 NLCYHLEEKSGGKVIH----RVGGVVFLYRGRNY 317
>sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana
GN=At1g23400 PE=2 SV=1
Length = 564
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 556 ERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSL 615
E+ L K M N + LGR G ++E +H HWK R V +V K + + L
Sbjct: 207 EKGMLIKPHMHDNRQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVL 266
Query: 616 VAESGGILISVDKLKEGHAIIIYRGKNY 643
++GG +I + G + ++RG+NY
Sbjct: 267 EEKTGGEIIH----RVGGVVYLFRGRNY 290
>sp|Q84N48|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1
SV=1
Length = 611
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T E + L K + N L +GR G+ ++E +H HW+ +E+ +V + +
Sbjct: 232 EPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMK 291
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
L +SGG +I + G + +YRG++Y
Sbjct: 292 NLCYHLEEKSGGKVIH----RVGGVVFLYRGRHY 321
>sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana
GN=At2g20020 PE=1 SV=2
Length = 701
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 550 EMITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
E +T+EE + L +K L +GR G+ ++ +H WK R V ++ K +
Sbjct: 241 EPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMD 300
Query: 610 YTAKSLVAESGGILISVDKLKEGHAIIIYRGKNY 643
+ L + GG +I + G + ++RG+NY
Sbjct: 301 NVCEQLEEKIGGKVI----YRRGGVLFLFRGRNY 330
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 111 FRRMKKERMVTKAETMLDGELLERLKDEAR-------KMRKWVKVKKAGVTESVVFEIRL 163
FR R V E +L GE L K+E R K + + + + G+T +++ I
Sbjct: 223 FRPGVGPRYVYSKEEIL-GEPL--TKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHD 279
Query: 164 AWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRG 211
W+R + +K +MD E LE K GG VI+ + ++RG
Sbjct: 280 LWKRRRVCKIKCKGVCTVDMDNVCEQLEEKIGGKVIYRRGGVLFLFRG 327
>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0174900 PE=2 SV=1
Length = 428
Score = 41.2 bits (95), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 573 LGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEG 632
LGR G+ ++ +H HWK E RV + L ++GG++I + G
Sbjct: 180 LGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIH----RHG 235
Query: 633 HAIIIYRGKNY---RRPL 647
+I+YRG++Y +RP+
Sbjct: 236 GQLILYRGRHYNPKKRPV 253
Score = 36.6 bits (83), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 136 KDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVK-FDVPLCRNMDRAREILELKT 194
K + + +K + + + G+T +++ +I W+ +E VK VP +M LE KT
Sbjct: 168 KCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTV-DMQNVCHQLEDKT 226
Query: 195 GGLVIWTKKDAHVVYRG 211
GGL+I ++YRG
Sbjct: 227 GGLIIHRHGGQLILYRG 243
>sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0188000 PE=2 SV=2
Length = 366
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 129 GELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVK-FDVPLCRNMDRAR 187
+L+ER + + + + K GVT +++ +I W+R E +K VP +MD
Sbjct: 151 AQLVERYRHS--DCSRQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTL-DMDNIC 207
Query: 188 EILELKTGGLVIWTKKDAHVVYRG 211
LE KTGG VI+ + ++YRG
Sbjct: 208 FHLEDKTGGKVIYRNINILILYRG 231
Score = 37.0 bits (84), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 573 LGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEG 632
LG+ GV +I+ +H HWK E R+ + L ++GG +I +
Sbjct: 168 LGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVI----YRNI 223
Query: 633 HAIIIYRGKNY 643
+ +I+YRG+NY
Sbjct: 224 NILILYRGRNY 234
>sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana
GN=At5g54890 PE=2 SV=1
Length = 358
Score = 37.4 bits (85), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 573 LGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEG 632
LG+ GV +I+ +H HWK E R+ + L +SGG ++ +
Sbjct: 166 LGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIV----YRNI 221
Query: 633 HAIIIYRGKNY 643
+ +++YRG+NY
Sbjct: 222 NILVLYRGRNY 232
Score = 37.4 bits (85), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 116 KERMVTKAETMLDGE---LLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAM 172
+ER ET+ + E L+ER + + + + K GVT +++ +I W++ E
Sbjct: 133 EERARVLGETLTEDEVTELIERYRHS--DCTRQINLGKGGVTHNMIDDIHNHWKKAEAVR 190
Query: 173 VK-FDVPLCRNMDRAREILELKTGGLVIWTKKDAHVVYRG 211
+K VP +MD LE K+GG +++ + V+YRG
Sbjct: 191 IKCLGVPTL-DMDNICFHLEEKSGGKIVYRNINILVLYRG 229
>sp|Q8VYD9|CAF1M_ARATH CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana
GN=At4g31010 PE=2 SV=1
Length = 405
Score = 37.0 bits (84), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 552 ITEEERQCLHKIGM--KINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVI 609
+TE ER+ L ++ K + LGR G+ ++ ++ HWK+ E RV K
Sbjct: 159 LTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRV----KCLGVPT 214
Query: 610 YTAKSLV----AESGGILISVDKLKEGHAIIIYRGKNY 643
K+++ ++ G ++S K +++YRG+NY
Sbjct: 215 LDMKNVIFHLEDKTFGQVVS----KHSGTLVLYRGRNY 248
>sp|Q8KGD4|MURG_CHLTE UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Chlorobium tepidum (strain ATCC 49652 /
DSM 12025 / TLS) GN=murG PE=3 SV=1
Length = 364
Score = 36.6 bits (83), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 328 PFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKIT 387
P R P ++R D L LPT V G +RG + + A+LKL + L +
Sbjct: 168 PAREFPAESRESCLD-----FFGLDRSLPTLLVFGGSRGARAINNAVLKLCHR-LEGTVN 221
Query: 388 VKWGIPNTDNEQMANELKASLAKW 411
+ W D ++M E+ S +W
Sbjct: 222 LIWQTGALDADRMRGEIGTSATRW 245
>sp|Q5ZJQ3|LIN52_CHICK Protein lin-52 homolog OS=Gallus gallus GN=LIN52 PE=3 SV=1
Length = 112
Score = 36.6 bits (83), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 316 DLLPEVVPG-------FKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQ 368
DL PE +PG FK P SPP ++L +D++ L++L L T ++ + RGLQ
Sbjct: 26 DLWPEQLPGVAEFAASFKSPITSSPPKWMAELENDDIDMLKELGS-LTTANLMEKVRGLQ 84
Query: 369 GLA 371
LA
Sbjct: 85 NLA 87
>sp|Q5NVP8|LIN52_PONAB Protein lin-52 homolog OS=Pongo abelii GN=LIN52 PE=3 SV=1
Length = 114
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 316 DLLPEVVPG-------FKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQ 368
DL PE +PG FK P SPP +++ D++ L++L L T ++ + RGLQ
Sbjct: 28 DLWPEQLPGVAEFAASFKSPITSSPPKWMAEIERDDIDMLKELGS-LTTANLMEKVRGLQ 86
Query: 369 GLA 371
LA
Sbjct: 87 NLA 89
>sp|Q8CD94|LIN52_MOUSE Protein lin-52 homolog OS=Mus musculus GN=Lin52 PE=2 SV=1
Length = 116
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 316 DLLPEVVPG-------FKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQ 368
DL PE +PG FK P SPP +++ D++ L++L L T ++ + RGLQ
Sbjct: 30 DLWPEQLPGVAEFAASFKSPITSSPPKWMAEIERDDIDMLKELGS-LTTANLMEKVRGLQ 88
Query: 369 GLA 371
LA
Sbjct: 89 NLA 91
>sp|Q52LA3|LIN52_HUMAN Protein lin-52 homolog OS=Homo sapiens GN=LIN52 PE=1 SV=1
Length = 116
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 316 DLLPEVVPG-------FKPPFRLSPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQ 368
DL PE +PG FK P SPP +++ D++ L++L L T ++ + RGLQ
Sbjct: 30 DLWPEQLPGVAEFAASFKSPITSSPPKWMAEIERDDIDMLKELGS-LTTANLMEKVRGLQ 88
Query: 369 GLA 371
LA
Sbjct: 89 NLA 91
>sp|B3QLW4|MURG_CHLP8 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Chlorobaculum parvum (strain NCIB 8327)
GN=murG PE=3 SV=1
Length = 364
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 355 LPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKW 411
LPT V G +RG + + A+L+ + L KI + W + D E++ E+ +S +W
Sbjct: 190 LPTLLVFGGSRGARAINNALLRFCGR-LEGKINLIWQTGSLDAERVTAEVSSSSTRW 245
>sp|A1BJX8|MURG_CHLPD UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Chlorobium phaeobacteroides (strain DSM
266) GN=murG PE=3 SV=1
Length = 364
Score = 34.7 bits (78), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 332 SPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWG 391
+P + S + D+ LA LPT V G +RG + + A+LK W + A + W
Sbjct: 167 NPSRSFSAIDPDQARLRFGLAESLPTLLVFGGSRGARSINNAVLK-WLDQITASANLIWQ 225
Query: 392 IPNTDNEQMANELKASLAKW 411
+ D E++ + +S W
Sbjct: 226 TGSLDYERIKAGVTSSARIW 245
>sp|Q70J99|UN13D_HUMAN Protein unc-13 homolog D OS=Homo sapiens GN=UNC13D PE=1 SV=1
Length = 1090
Score = 34.3 bits (77), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 316 DLLPEVVPGFKPPFRLSPPDARSKLTDDEL-TYLRKLAHPLPTH 358
D P++ P +PP P+ R+ L +D L T L +L HP P H
Sbjct: 31 DPPPQMAPEIQPPSHHFSPEQRALLYEDALYTVLHRLGHPEPNH 74
>sp|Q6CVG9|ATG11_KLULA Autophagy-related protein 11 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=ATG11 PE=3 SV=1
Length = 1046
Score = 34.3 bits (77), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 8/125 (6%)
Query: 414 NFKFSDDGVLLMQHLTGGVLLLRNKFLIILYRGKDFLPCGVENLIVERERELQICQNHEE 473
++ S D L+++ + L + L + D P G+ N + +Q+ +N
Sbjct: 500 DYALSKDSELIIEGYKARIKKLEHLLLDAQFHQYDSWPAGILN---KETAMVQMFRNSTV 556
Query: 474 GARLKAIETFHLPDEPLEKTSKAGTLSEFQNIQSDFGDLKMGNREFELQLEAEIEDLERE 533
+L+ TF LP + S T EFQN+Q D E LE E+ L+ +
Sbjct: 557 STKLQQSSTFDLPSSKQQHESNK-TFEEFQNLQKDISKYS----ELTKTLETELSTLKSQ 611
Query: 534 LRKQE 538
L E
Sbjct: 612 LSHME 616
>sp|B4S6Q9|MURG_PROA2 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Prosthecochloris aestuarii (strain DSM
271 / SK 413) GN=murG PE=3 SV=1
Length = 365
Score = 33.9 bits (76), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 355 LPTHFVLGRNRGLQGLATAILKLWEKSLVAKITVKWGIPNTDNEQMANELKASLAKW 411
LPT V G +RG + + A+ K W K + W + D+E++ E++ S W
Sbjct: 190 LPTLLVFGGSRGARSINNAV-KTWISGAAGKANIIWQTGSLDDERLRKEVEPSATLW 245
>sp|Q803Q2|NDL1B_DANRE Nuclear distribution protein nudE-like 1-B OS=Danio rerio GN=ndel1b
PE=2 SV=1
Length = 344
Score = 33.9 bits (76), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 25/148 (16%)
Query: 503 QNIQSDFGDLKMGNREFELQLEAEIEDLE---RELRKQERKLLLEQDPDLEMITEEERQC 559
+ Q + + + G+RE E +LEA++ E R+L+ + ++L E D E + ++ Q
Sbjct: 31 HDAQEELQEFQEGSRELEAELEAQLGQAEHRIRDLQSENQRLKSEVDILKEKLEQQYAQS 90
Query: 560 LHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVAR---------VITKQKLFAQVIY 610
+I M + +LL R G+ E LH++ + E A IT + F Q +
Sbjct: 91 YKQISM-LEDDLLQTR-----GIKEQLHKYVRELEQANDDLERAKRATITSLEDFEQRLN 144
Query: 611 TA-------KSLVAESGGILISVDKLKE 631
A +S + E +L+SV +LK+
Sbjct: 145 QAIERNAFLESELDEKESLLVSVQRLKD 172
>sp|Q99323|MYSN_DROME Myosin heavy chain, non-muscle OS=Drosophila melanogaster GN=zip PE=1
SV=2
Length = 2057
Score = 33.5 bits (75), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 18/124 (14%)
Query: 523 LEAEIEDLERELRKQERKLLLEQDPD---------LEMITEEERQCL--HKIGM-KINSN 570
LEA+I +LE +L + ++ LL+Q + L M E+ER+ + HK M K+NS
Sbjct: 1903 LEAKIANLEEQLENEGKERLLQQKANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSR 1962
Query: 571 LLLGRRGVFDGVIEGLH----QHWKY-REVARVITKQKLFAQVIYTAKSLVAESGGILIS 625
+ L +R D E L Q KY RE +I Q+ + I + K+ + +GGI +S
Sbjct: 1963 IKLLKRN-LDETEEELQKEKTQKRKYQRECEDMIESQEAMNREINSLKTKLRRTGGIGLS 2021
Query: 626 VDKL 629
+L
Sbjct: 2022 SSRL 2025
>sp|Q04449|PHR_BACPE Deoxyribodipyrimidine photo-lyase OS=Bacillus pseudofirmus (strain
OF4) GN=phr PE=3 SV=2
Length = 479
Score = 33.5 bits (75), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 15/94 (15%)
Query: 272 TSIFMDKNLRIDKSLYEREGDRLLDGLGPRF-VDWWMWKPLPVDGDLLPEVVPGFKPPFR 330
T+ F+ K+L ID L ER +R+L P + W W V D +P FR
Sbjct: 350 TASFLTKDLLIDWRLGERYFERMLIDYDPSSNIGGWQWAA-SVGTDAVPY--------FR 400
Query: 331 LSPPDARSKLTDDELTYLR----KLAHPLPTHFV 360
+ P +SK D+ TY+R +L H +P H++
Sbjct: 401 IFNPVTQSKRFDENGTYIRTYIPELNH-VPDHYI 433
>sp|Q9QYE6|GOGA5_MOUSE Golgin subfamily A member 5 OS=Mus musculus GN=Golga5 PE=1 SV=2
Length = 729
Score = 33.1 bits (74), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 35/189 (18%)
Query: 332 SPPDARSKLTDDELTYLRKLAHPLPTHFVLGRNRGLQGLATAILKLWEKSLVAKITV-KW 390
+P D S+ EL+ LR L + L + V N+ + L + E+ A++ V KW
Sbjct: 211 TPSDGSSR--SQELSNLR-LENQLLRNEVQSLNQEMASLLQRSKETQEELNKARVRVEKW 267
Query: 391 GIPNTDNEQMANELKASLAKWKPNFKFSDDGVLLMQHLTGGVLLLRNKFLII---LYRGK 447
+ N+ ++++ EL+A + DD LT V ++ ++ L
Sbjct: 268 NVDNSKSDRITRELRAQV----------DD-------LTEAVAAKDSQLAVLKVRLQEAD 310
Query: 448 DFLPCGVENLIVERERELQICQNHEEGARL--KAIET----FHLPDEPLEKTSKAGTLSE 501
L E L R + +I Q+H+EG+ L +A++T H D L++ ++
Sbjct: 311 QVLSSRTEALEALRSEKSRIMQDHKEGSSLQNQALQTLQERLHEADATLKREQES----- 365
Query: 502 FQNIQSDFG 510
++ +QS+F
Sbjct: 366 YKQMQSEFA 374
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 278,844,562
Number of Sequences: 539616
Number of extensions: 12263854
Number of successful extensions: 39516
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 39173
Number of HSP's gapped (non-prelim): 416
length of query: 744
length of database: 191,569,459
effective HSP length: 125
effective length of query: 619
effective length of database: 124,117,459
effective search space: 76828707121
effective search space used: 76828707121
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)