Query 041729
Match_columns 744
No_of_seqs 284 out of 792
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 17:12:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rq8_A Conserved hypothetical 99.9 2E-27 6.9E-32 215.0 13.2 96 551-651 1-96 (104)
2 1jo0_A Hypothetical protein HI 99.9 3.9E-27 1.3E-31 211.0 12.5 88 125-212 1-88 (98)
3 1jo0_A Hypothetical protein HI 99.9 5.1E-27 1.7E-31 210.2 13.2 96 551-652 2-97 (98)
4 1rq8_A Conserved hypothetical 99.9 5.6E-27 1.9E-31 212.1 12.9 88 126-213 1-88 (104)
5 3ka5_A Ribosome-associated pro 66.5 13 0.00046 31.2 6.3 49 169-217 1-52 (65)
6 3k2t_A LMO2511 protein; lister 53.6 14 0.00046 30.3 4.1 48 169-216 1-51 (57)
7 3lyv_A Ribosome-associated fac 46.4 16 0.00055 30.8 3.5 49 169-217 2-53 (66)
8 1ydh_A AT5G11950; structural g 17.9 1.7E+02 0.0057 29.2 5.8 31 560-590 128-158 (216)
9 2e6x_A TT1592, hypothetical pr 17.6 56 0.0019 27.7 1.9 17 188-204 3-19 (69)
10 3ka5_A Ribosome-associated pro 17.0 2.8E+02 0.0097 23.2 6.0 50 594-644 1-50 (65)
No 1
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.95 E-value=2e-27 Score=214.98 Aligned_cols=96 Identities=22% Similarity=0.373 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHhhcccCcceeeeCCCCCCHHHHHHHHHHhhhCCeEEEEecCCCHHHHHHHHHHHHHHhCCEEEeecccC
Q 041729 551 MITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLK 630 (744)
Q Consensus 551 ~LT~eQR~~LRklghkLKPvV~IGKrGVtdgVIeeIh~aLk~hELVKVkv~~~~~~d~keiA~~Le~~SGg~LVqV~k~~ 630 (744)
|||++||+|||++||+|+|+|+||++||||+||++|+++|++||||||+|.+++.++++++|++||+.|||++||+
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~---- 76 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQV---- 76 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEE----
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEE----
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCcEEEEecCCCCCCCccccc
Q 041729 631 EGHAIIIYRGKNYRRPLKLMT 651 (744)
Q Consensus 631 IG~tiILYRgknY~rP~~l~p 651 (744)
||+++||||+++ ..|.+.+|
T Consensus 77 IG~~~VLYR~~~-~~~~i~~~ 96 (104)
T 1rq8_A 77 IGSMIVIYRESK-ENKEIELP 96 (104)
T ss_dssp ETTEEEEEECCC-SCCSCCCC
T ss_pred ECCEEEEEeCCC-CCCceecc
Confidence 899999999987 56666655
No 2
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.94 E-value=3.9e-27 Score=210.99 Aligned_cols=88 Identities=25% Similarity=0.184 Sum_probs=86.3
Q ss_pred cCCCHHHHHHHHHHhhcccceEEecCCCCCHHHHHHHHHHHHhCceEEEEecCCchhhHHHHHHHHHHHhCCeEEEEeCC
Q 041729 125 TMLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKD 204 (744)
Q Consensus 125 l~L~~~ElrrLR~lA~~LkpvV~VGK~GVT~~VV~~Iheawk~~ELIKVKv~~~~~~dmk~v~e~LEekTGg~VVqriG~ 204 (744)
.+||.+|+++||++||+|+|+|+|||+|||++|+++|++||++||||||||+++|.+|++++++.||++|||++||+||+
T Consensus 1 ~~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~ 80 (98)
T 1jo0_A 1 TTLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGH 80 (98)
T ss_dssp CCCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETT
T ss_pred CCCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECC
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecC
Q 041729 205 AHVVYRGD 212 (744)
Q Consensus 205 viVLYRg~ 212 (744)
++||||++
T Consensus 81 ~~vLyR~~ 88 (98)
T 1jo0_A 81 ILVLYRPS 88 (98)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999986
No 3
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.94 E-value=5.1e-27 Score=210.25 Aligned_cols=96 Identities=17% Similarity=0.322 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHhhcccCcceeeeCCCCCCHHHHHHHHHHhhhCCeEEEEecCCCHHHHHHHHHHHHHHhCCEEEeecccC
Q 041729 551 MITEEERQCLHKIGMKINSNLLLGRRGVFDGVIEGLHQHWKYREVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLK 630 (744)
Q Consensus 551 ~LT~eQR~~LRklghkLKPvV~IGKrGVtdgVIeeIh~aLk~hELVKVkv~~~~~~d~keiA~~Le~~SGg~LVqV~k~~ 630 (744)
+||++||+|||++||+|+|+|+||++||||+|+++|++||++||||||+|.+++.++++++|++||+.|||++||+
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~---- 77 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQT---- 77 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEE----
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEE----
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCcEEEEecCCCCCCCcccccc
Q 041729 631 EGHAIIIYRGKNYRRPLKLMTQ 652 (744)
Q Consensus 631 IG~tiILYRgknY~rP~~l~pk 652 (744)
||+++||||++.. |.+.+|+
T Consensus 78 IG~~~vLyR~~~~--~~i~lp~ 97 (98)
T 1jo0_A 78 IGHILVLYRPSEE--AKIQLPR 97 (98)
T ss_dssp ETTEEEEECCCSS--CCBCCCC
T ss_pred ECCEEEEEccCCC--CCcCCCC
Confidence 8999999999844 5555553
No 4
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.94 E-value=5.6e-27 Score=212.12 Aligned_cols=88 Identities=20% Similarity=0.232 Sum_probs=86.6
Q ss_pred CCCHHHHHHHHHHhhcccceEEecCCCCCHHHHHHHHHHHHhCceEEEEecCCchhhHHHHHHHHHHHhCCeEEEEeCCE
Q 041729 126 MLDGELLERLKDEARKMRKWVKVKKAGVTESVVFEIRLAWRRNELAMVKFDVPLCRNMDRAREILELKTGGLVIWTKKDA 205 (744)
Q Consensus 126 ~L~~~ElrrLR~lA~~LkpvV~VGK~GVT~~VV~~Iheawk~~ELIKVKv~~~~~~dmk~v~e~LEekTGg~VVqriG~v 205 (744)
|||.+|+++||++||+|+|+|+|||+|||++|+++|+++|++||||||||+++|..|++++++.||++|||++||+||++
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~ 80 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSM 80 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTE
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCC
Q 041729 206 HVVYRGDG 213 (744)
Q Consensus 206 iVLYRg~~ 213 (744)
+||||++.
T Consensus 81 ~VLYR~~~ 88 (104)
T 1rq8_A 81 IVIYRESK 88 (104)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99999974
No 5
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=66.54 E-value=13 Score=31.22 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=42.4
Q ss_pred ceEEEEecCCchhhHHHHHHHHHHHhCCeEEEEe---CCEEEEEecCCCCCC
Q 041729 169 ELAMVKFDVPLCRNMDRAREILELKTGGLVIWTK---KDAHVVYRGDGSKSS 217 (744)
Q Consensus 169 ELIKVKv~~~~~~dmk~v~e~LEekTGg~VVqri---G~viVLYRg~~Y~~p 217 (744)
++|+.|-....+.+.++++.+|+-.-.--.|.+. |.+-|+||.++.+|-
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~gh~F~vF~n~etg~~nVVYRR~dG~yG 52 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKDGNYG 52 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHHTCSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhCCCcEEEEEeCCCCCEEEEEEeCCCCEE
Confidence 5789998888999999999999988777777775 789999999988764
No 6
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=53.64 E-value=14 Score=30.29 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=37.4
Q ss_pred ceEEEEecCCchhhHHHHHHHHHHHhCCeEEEEe---CCEEEEEecCCCCC
Q 041729 169 ELAMVKFDVPLCRNMDRAREILELKTGGLVIWTK---KDAHVVYRGDGSKS 216 (744)
Q Consensus 169 ELIKVKv~~~~~~dmk~v~e~LEekTGg~VVqri---G~viVLYRg~~Y~~ 216 (744)
++|+.|-....+.+.++++.+|+..-.--+|.+. |.+-|+||.++.+|
T Consensus 1 ~ivr~K~~~~kpmsveEAv~qmel~gh~F~vF~n~~t~~~nVvYrR~dG~y 51 (57)
T 3k2t_A 1 EIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKDGKY 51 (57)
T ss_dssp CCCCCCC---CCBCHHHHHHHHHHHTCSEEEEEBSSSCCEEEEEECTTSCE
T ss_pred CeEEEEeccCCCCCHHHHHHHHHhCCCcEEEEEcCCCCCEEEEEEeCCCCE
Confidence 4567777777788999999999988777778774 88999999988875
No 7
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=46.44 E-value=16 Score=30.81 Aligned_cols=49 Identities=18% Similarity=0.256 Sum_probs=40.2
Q ss_pred ceEEEEecCCchhhHHHHHHHHHHHhCCeEEEEe---CCEEEEEecCCCCCC
Q 041729 169 ELAMVKFDVPLCRNMDRAREILELKTGGLVIWTK---KDAHVVYRGDGSKSS 217 (744)
Q Consensus 169 ELIKVKv~~~~~~dmk~v~e~LEekTGg~VVqri---G~viVLYRg~~Y~~p 217 (744)
++|+.|-....+.+.++++.+|+-.-.--.|.+. |.+-|+||.++.+|-
T Consensus 2 ~iVr~K~~~~kpMsveEAv~qMel~gh~F~vF~n~etg~~nVVYRR~dG~yG 53 (66)
T 3lyv_A 2 QVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDGATNILYRREDGNLG 53 (66)
T ss_dssp CCCCCCCCCCCEECHHHHHHHHHTTTCSEEEEEETTTCSEEEEEECTTSSEE
T ss_pred eEEEEEEccCCCCCHHHHHHHHHcCCCcEEEEEeCCCCCEEEEEEECCCCEE
Confidence 4677777777888999999999987767777775 889999999988764
No 8
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=17.87 E-value=1.7e+02 Score=29.21 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=25.3
Q ss_pred HHhhcccCcceeeeCCCCCCHHHHHHHHHHh
Q 041729 560 LHKIGMKINSNLLLGRRGVFDGVIEGLHQHW 590 (744)
Q Consensus 560 LRklghkLKPvV~IGKrGVtdgVIeeIh~aL 590 (744)
+..+|.+-+|++++|..|.++.+++-++...
T Consensus 128 ~~qlg~~~kPvvll~~~gfw~~l~~~l~~~~ 158 (216)
T 1ydh_A 128 WSQLGIHKKTVGLLNVDGYYNNLLALFDTGV 158 (216)
T ss_dssp HHHHTSCCCEEEEECGGGTTHHHHHHHHHHH
T ss_pred HHHhcccCCCEEEecCCccchHHHHHHHHHH
Confidence 4456678899999999999999999886433
No 9
>2e6x_A TT1592, hypothetical protein TTHA1281; unknown function protein, NPPSFA, national project on protei structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=17.55 E-value=56 Score=27.74 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.4
Q ss_pred HHHHHHhCCeEEEEeCC
Q 041729 188 EILELKTGGLVIWTKKD 204 (744)
Q Consensus 188 e~LEekTGg~VVqriG~ 204 (744)
+.+-++.|+.+|||||+
T Consensus 3 ~d~L~~LG~~LvWRiGk 19 (69)
T 2e6x_A 3 KDLLDKLGQHLVWRMGR 19 (69)
T ss_dssp HHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHhceeEEeecc
Confidence 35667899999999997
No 10
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=16.96 E-value=2.8e+02 Score=23.20 Aligned_cols=50 Identities=6% Similarity=-0.005 Sum_probs=37.3
Q ss_pred CeEEEEecCCCHHHHHHHHHHHHHHhCCEEEeecccCcCcEEEEecCCCCC
Q 041729 594 EVARVITKQKLFAQVIYTAKSLVAESGGILISVDKLKEGHAIIIYRGKNYR 644 (744)
Q Consensus 594 ELVKVkv~~~~~~d~keiA~~Le~~SGg~LVqV~k~~IG~tiILYRgknY~ 644 (744)
++|+.+...-.+-.+.+++.+++-.-.--+|=.+ -.-|.+-|+||.++..
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~gh~F~vF~n-~etg~~nVVYRR~dG~ 50 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELLGHNFFVFQN-GDSNEVNVVYKRKDGN 50 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHHTCSEEEEEE-TTTTEEEEEEECTTSC
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhCCCcEEEEEe-CCCCCEEEEEEeCCCC
Confidence 4677777777778889999999876555555543 3358999999998654
Done!