BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041736
(500 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 122/241 (50%), Gaps = 7/241 (2%)
Query: 123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLP-RSFNKLKLLFELDLSNNR 181
T+ G+DL+ +P G + + +++N F G LP + K++ L LDLS N
Sbjct: 292 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 351
Query: 182 FAGKFPYVVLGL-PKLKFLDLRYNEFEGKIPKALFDK---DLDAVFINNNRFSFELPDNI 237
F+G+ P + L L LDL N F G I L L +++ NN F+ ++P +
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 411
Query: 238 GN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDV 296
N S + L L+ N G +P S G++S+ L ++ L N L +P+E+ +K + +
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLIL 470
Query: 297 SYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC 356
+N L GE+P ++ T+L +++++N L+G +P + L NL N F+G P
Sbjct: 471 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 530
Query: 357 L 357
L
Sbjct: 531 L 531
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 116/261 (44%), Gaps = 32/261 (12%)
Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF 186
+D++ ++ + ++ L ++++N+F G +P LK L L L+ N+F G+
Sbjct: 225 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 282
Query: 187 PYVVLGL-PKLKFLDLRYNEFEGKIP--------------------------KALFDKDL 219
P + G L LDL N F G +P L + L
Sbjct: 283 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 342
Query: 220 DAVFINNNRFSFELPDNIGNSPVSVLVL--ANNKFHG-CLPLSFGNMSRTLNEVILTNNG 276
+ ++ N FS ELP+++ N S+L L ++N F G LP N TL E+ L NNG
Sbjct: 343 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 402
Query: 277 LHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSL 336
+P + + +S+N L G +P ++ ++ L+ L + NML G +P + +
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Query: 337 PNLRNFSFDYNFFTGESPVCL 357
L D+N TGE P L
Sbjct: 463 KTLETLILDFNDLTGEIPSGL 483
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 115/259 (44%), Gaps = 49/259 (18%)
Query: 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNN 180
++T+ + L+ D+ +P L ++ ++ NR G +P+ +L+ L L LSNN
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Query: 181 RFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDA----------VFINN---- 226
F+G P + L +LDL N F G IP A+F + V+I N
Sbjct: 522 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 581
Query: 227 --------------------NRFSFELPDNI--------------GNSPVSVLVLANNKF 252
NR S P NI N + L ++ N
Sbjct: 582 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 641
Query: 253 HGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEM 312
G +P G+M L + L +N + +P+E+G L+ + + D+S NKL G +P ++ +
Sbjct: 642 SGYIPKEIGSMPY-LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 313 TSLQQLNVAHNMLSGTVPD 331
T L ++++++N LSG +P+
Sbjct: 701 TMLTEIDLSNNNLSGPIPE 719
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 113/217 (52%), Gaps = 9/217 (4%)
Query: 147 DIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEF 206
++ V++N F +P L LD+S N+ +G F + +LK L++ N+F
Sbjct: 198 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 207 EGKIPKALFDKDLDAVFINNNRFSFELPDNIGNS--PVSVLVLANNKFHGCLPLSFGNMS 264
G IP L K L + + N+F+ E+PD + + ++ L L+ N F+G +P FG+ S
Sbjct: 257 VGPIP-PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 265 RTLNEVILTNNGLHSCLPEEIGL-LKNVTVFDVSYNKLMGELPDTIAEMT-SLQQLNVAH 322
+ + +NN LP + L ++ + V D+S+N+ GELP+++ ++ SL L+++
Sbjct: 316 LLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 374
Query: 323 NMLSGTVPDSVCSLP--NLRNFSFDYNFFTGESPVCL 357
N SG + ++C P L+ N FTG+ P L
Sbjct: 375 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 411
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 89/189 (47%), Gaps = 19/189 (10%)
Query: 39 AAFIKQRQLLYYRNRYGGRGEFGRIPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTSN 98
A FI ++ +Y +N G + E +F+ IRS + + +P N+TS
Sbjct: 564 ANFIAGKRYVYIKND-GMKKECHGAGNLLEFQG--IRS-----EQLNRLSTRNPCNITSR 615
Query: 99 WVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRF 158
G + + DN+ ++ +D+++ ++ Y+P+E+G + + + ++ N
Sbjct: 616 VYGGHT--------SPTFDNNG--SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 665
Query: 159 CGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPK-ALFDK 217
G++P L+ L LDLS+N+ G+ P + L L +DL N G IP+ F+
Sbjct: 666 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFET 725
Query: 218 DLDAVFINN 226
A F+NN
Sbjct: 726 FPPAKFLNN 734
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 122/241 (50%), Gaps = 7/241 (2%)
Query: 123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLP-RSFNKLKLLFELDLSNNR 181
T+ G+DL+ +P G + + +++N F G LP + K++ L LDLS N
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 182 FAGKFPYVVLGL-PKLKFLDLRYNEFEGKIPKALFDK---DLDAVFINNNRFSFELPDNI 237
F+G+ P + L L LDL N F G I L L +++ NN F+ ++P +
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 238 GN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDV 296
N S + L L+ N G +P S G++S+ L ++ L N L +P+E+ +K + +
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLIL 473
Query: 297 SYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC 356
+N L GE+P ++ T+L +++++N L+G +P + L NL N F+G P
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533
Query: 357 L 357
L
Sbjct: 534 L 534
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 116/261 (44%), Gaps = 32/261 (12%)
Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF 186
+D++ ++ + ++ L ++++N+F G +P LK L L L+ N+F G+
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 285
Query: 187 PYVVLGL-PKLKFLDLRYNEFEGKIP--------------------------KALFDKDL 219
P + G L LDL N F G +P L + L
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345
Query: 220 DAVFINNNRFSFELPDNIGNSPVSVLVL--ANNKFHG-CLPLSFGNMSRTLNEVILTNNG 276
+ ++ N FS ELP+++ N S+L L ++N F G LP N TL E+ L NNG
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405
Query: 277 LHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSL 336
+P + + +S+N L G +P ++ ++ L+ L + NML G +P + +
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 337 PNLRNFSFDYNFFTGESPVCL 357
L D+N TGE P L
Sbjct: 466 KTLETLILDFNDLTGEIPSGL 486
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 115/259 (44%), Gaps = 49/259 (18%)
Query: 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNN 180
++T+ + L+ D+ +P L ++ ++ NR G +P+ +L+ L L LSNN
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 181 RFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDA----------VFINN---- 226
F+G P + L +LDL N F G IP A+F + V+I N
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584
Query: 227 --------------------NRFSFELPDNI--------------GNSPVSVLVLANNKF 252
NR S P NI N + L ++ N
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644
Query: 253 HGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEM 312
G +P G+M L + L +N + +P+E+G L+ + + D+S NKL G +P ++ +
Sbjct: 645 SGYIPKEIGSMPY-LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 313 TSLQQLNVAHNMLSGTVPD 331
T L ++++++N LSG +P+
Sbjct: 704 TMLTEIDLSNNNLSGPIPE 722
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 113/217 (52%), Gaps = 9/217 (4%)
Query: 147 DIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEF 206
++ V++N F +P L LD+S N+ +G F + +LK L++ N+F
Sbjct: 201 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 207 EGKIPKALFDKDLDAVFINNNRFSFELPDNIGNS--PVSVLVLANNKFHGCLPLSFGNMS 264
G IP L K L + + N+F+ E+PD + + ++ L L+ N F+G +P FG+ S
Sbjct: 260 VGPIP-PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 265 RTLNEVILTNNGLHSCLPEEIGL-LKNVTVFDVSYNKLMGELPDTIAEMT-SLQQLNVAH 322
+ + +NN LP + L ++ + V D+S+N+ GELP+++ ++ SL L+++
Sbjct: 319 LLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377
Query: 323 NMLSGTVPDSVCSLP--NLRNFSFDYNFFTGESPVCL 357
N SG + ++C P L+ N FTG+ P L
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 89/189 (47%), Gaps = 19/189 (10%)
Query: 39 AAFIKQRQLLYYRNRYGGRGEFGRIPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTSN 98
A FI ++ +Y +N G + E +F+ IRS + + +P N+TS
Sbjct: 567 ANFIAGKRYVYIKND-GMKKECHGAGNLLEFQG--IRS-----EQLNRLSTRNPCNITSR 618
Query: 99 WVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRF 158
G + + DN+ ++ +D+++ ++ Y+P+E+G + + + ++ N
Sbjct: 619 VYGGHT--------SPTFDNNG--SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Query: 159 CGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPK-ALFDK 217
G++P L+ L LDLS+N+ G+ P + L L +DL N G IP+ F+
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFET 728
Query: 218 DLDAVFINN 226
A F+NN
Sbjct: 729 FPPAKFLNN 737
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 8/209 (3%)
Query: 124 VAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFA 183
+ GI+ ++ +P + L + ++ G +P +++K L LD S N +
Sbjct: 83 IGGIN----NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138
Query: 184 GKFPYVVLGLPKLKFLDLRYNEFEGKIPKAL--FDKDLDAVFINNNRFSFELPDNIGNSP 241
G P + LP L + N G IP + F K ++ I+ NR + ++P N
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198
Query: 242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKL 301
++ + L+ N G + FG+ T ++ L N L L ++GL KN+ D+ N++
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNT-QKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRI 256
Query: 302 MGELPDTIAEMTSLQQLNVAHNMLSGTVP 330
G LP + ++ L LNV+ N L G +P
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 34/204 (16%)
Query: 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLF-ELDLSN 179
I+T+ +D ++ ++ LP + L ++ + NR G +P S+ LF + +S
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 180 NRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALF--DKDLDAVFINNNRFSFELPDNI 237
NR GK P L L F+DL N EG LF DK+ + + N +F+L +
Sbjct: 184 NRLTGKIPPTFANL-NLAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDL-GKV 240
Query: 238 GNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVS 297
G +S+ LN + L NN ++ LP+ + LK + +VS
Sbjct: 241 G------------------------LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 298 YNKLMGELPDTIAEMTSLQQLNVA 321
+N L GE+P + +LQ+ +V+
Sbjct: 277 FNNLCGEIP----QGGNLQRFDVS 296
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 275 NGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVC 334
N L +P I L + +++ + G +PD ++++ +L L+ ++N LSGT+P S+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 335 SLPNLRNFSFDYNFFTGESP 354
SLPNL +FD N +G P
Sbjct: 147 SLPNLVGITFDGNRISGAIP 166
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 14/170 (8%)
Query: 214 LFDKDLDAVFINNNRFS-------FELPDNIGNSP-VSVLVLAN-NKFHGCLPLSFGNMS 264
L D D +NN S + +P ++ N P ++ L + N G +P + ++
Sbjct: 42 LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101
Query: 265 RTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNM 324
+ L+ + +T+ + +P+ + +K + D SYN L G LP +I+ + +L + N
Sbjct: 102 Q-LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Query: 325 LSGTVPDSVCSLPNL-RNFSFDYNFFTGESPVC---LDLQGFDDKRNCLR 370
+SG +PDS S L + + N TG+ P L+L D RN L
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 93/236 (39%), Gaps = 27/236 (11%)
Query: 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNN 180
+R V DL + LP D AL + N+ F LK L L L NN
Sbjct: 33 LRVVQCSDLGLEKVPKDLP------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 181 RFAGKFPYVVLGLPKLKFLDLRYN---EFEGKIPKALFDKDLDAVFINNNRFSF------ 231
+ + P L KL+ L L N E K+PK L + + I R S
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ 146
Query: 232 ELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNV 291
+ +G +P+ + N F G LS+ R + I T +P+ GL ++
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSY---IRIADTNITT-------IPQ--GLPPSL 194
Query: 292 TVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYN 347
T + NK+ ++ + +L +L ++ N +S S+ + P+LR + N
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 94/236 (39%), Gaps = 27/236 (11%)
Query: 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNN 180
+R V DL + LP D AL + N+ F LK L L L NN
Sbjct: 33 LRVVQCSDLGLEKVPKDLP------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 86
Query: 181 RFAGKFPYVVLGLPKLKFLDLRYN---EFEGKIPKALFDKDLDAVFINNNRFSF------ 231
+ + P L KL+ L L N E K+PK L + + I R S
Sbjct: 87 KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ 146
Query: 232 ELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNV 291
+ +G +P+ + N F G LS+ ++ T I T +P+ GL ++
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT---NITT-------IPQ--GLPPSL 194
Query: 292 TVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYN 347
T + NK+ ++ + +L +L ++ N +S S+ + P+LR + N
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 7/155 (4%)
Query: 197 KFLDLRYNEFEGKIPKALFDK--DLDAVFINNNRFSFELPDNIGNS--PVSVLVLANNKF 252
K LDL+ N+ +P F + L +++N+N+ LP I + L + +NK
Sbjct: 40 KKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKL 97
Query: 253 HGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEM 312
LP+ + L E+ L N L S P L +T + YN+L ++
Sbjct: 98 QA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156
Query: 313 TSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYN 347
TSL++L + +N L + L L+ D N
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 27/116 (23%)
Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRS--------------------- 165
+DL ++S + L + L ++N N+ TLP
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 166 ----FNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDK 217
F++L L EL L N+ P V L KL +L L YNE + +PK +FDK
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDK 155
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 107/273 (39%), Gaps = 27/273 (9%)
Query: 123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRF 182
+V +DL+HG + S L D+ + ++ N+ +F L L L+LS N
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Query: 183 AGKFPYVVLGLPKLKFLDLRYNEFE------GKIPKALFDKDLDAVFINNNRFSFELPDN 236
+ GLPK+ ++DL+ N K + L DL + F +PD
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDI 386
Query: 237 I--GNSPVS---------VLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEI 285
GN V+ ++ L+ N+ L F L +IL N SC ++
Sbjct: 387 FLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446
Query: 286 GLLKNVTVFDVSYNKLMGELP-------DTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPN 338
+N ++ + + M +L D ++ LQ L + HN L+ P L
Sbjct: 447 P-SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505
Query: 339 LRNFSFDYNFFT--GESPVCLDLQGFDDKRNCL 369
LR S + N T + + +L+ D RN L
Sbjct: 506 LRGLSLNSNRLTVLSHNDLPANLEILDISRNQL 538
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 103/261 (39%), Gaps = 54/261 (20%)
Query: 94 NLTSNWVG-CYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFH 152
NL+ N +G Y N+ G + VA IDL IA + L +
Sbjct: 320 NLSYNLLGELYSSNFYG-----------LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD 368
Query: 153 VNTN-----RFCGTLPRSF---NKLKLLFELDL-------SNNRFAG-KFPYVVLGLPKL 196
+ N F ++P F NKL L +++L S NR Y +L +P L
Sbjct: 369 LRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHL 428
Query: 197 KFLDLRYNEFEG----KIPKALFDKDLDAVFINNNRFSFELPDNI------GNSPVSVLV 246
+ L L N F + P + L+ +F+ N + G S + VL
Sbjct: 429 QILILNQNRFSSCSGDQTPSE--NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486
Query: 247 LANNKFHGCLPLSFGNMSRTLNEVILTNNGL----HSCLPEEIGLLKNVTVFDVSYNKLM 302
L +N + P F +++ L + L +N L H+ LP N+ + D+S N+L+
Sbjct: 487 LNHNYLNSLPPGVFSHLT-ALRGLSLNSNRLTVLSHNDLP------ANLEILDISRNQLL 539
Query: 303 GELPDTIAEMTSLQQLNVAHN 323
PD SL L++ HN
Sbjct: 540 APNPDV---FVSLSVLDITHN 557
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 31/194 (15%)
Query: 168 KLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYN--EFEGKIPKALFD----KDLDA 221
KLK L L ++N+ F V LP L+FLDL N F+G ++ F K LD
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380
Query: 222 VF-----INNNRFSFELPDNIGNSPVSVLVLAN-NKFHGCLPLSFGNMSRTLNEVILTN- 274
F +++N E +++ ++ ++ + F L + ++S T V
Sbjct: 381 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440
Query: 275 -NGLHSC--------------LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLN 319
NGL S LP+ L+N+T D+S +L P ++SLQ LN
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 320 VAHNMLSGTVPDSV 333
+A N L +VPD +
Sbjct: 501 MASNQLK-SVPDGI 513
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 24/154 (15%)
Query: 175 LDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELP 234
LDLS N Y P+L+ LDL E + + D ++
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-----TIEDGAYQSL------------ 75
Query: 235 DNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVF 294
S +S L+L N +F +S +L +++ L S IG LK +
Sbjct: 76 -----SHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKEL 129
Query: 295 DVSYNKLMG-ELPDTIAEMTSLQQLNVAHNMLSG 327
+V++N + +LP+ + +T+L+ L+++ N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 9/146 (6%)
Query: 191 LGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFIN----NNRFSFELPDNIGNSPVSVLV 246
LGL +L+ LD +++ + ++F + ++++ + R +F N G S + VL
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLK 451
Query: 247 LANNKFH-GCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGEL 305
+A N F LP F + R L + L+ L P L ++ V +++ N+L +
Sbjct: 452 MAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-V 509
Query: 306 PDTIAE-MTSLQQLNVAHNMLSGTVP 330
PD I + +TSLQ++ + N + P
Sbjct: 510 PDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 309 IAEMTSLQQLNVAHNML-SGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQ 360
I + +L++LNVAHN++ S +P+ +L NL + N +S C DL+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI--QSIYCTDLR 170
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 26/206 (12%)
Query: 149 ALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFE- 207
A F +N RF L +FNK+K + E DL N F GK + +L L + D+ NE+
Sbjct: 147 ASFFLNMRRF-HVLDLTFNKVKSICEEDLLN--FQGKH-FTLLRLSSITLQDM--NEYWL 200
Query: 208 --GKIPKALFDKDLDAVFINNNRFSFELP----DNIGNSPVSVLVLANNKFHGCLPLSFG 261
K + + + ++ N F + D I + + L+L+N+ G SFG
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS---SFG 257
Query: 262 NMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVA 321
+ + + T GL + V D+S +K+ L + T L+QL +A
Sbjct: 258 HTNFK-DPDNFTFKGLEA---------SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307
Query: 322 HNMLSGTVPDSVCSLPNLRNFSFDYN 347
N ++ ++ L +L+ + D N
Sbjct: 308 QNEINKIDDNAFWGLTHLKELALDTN 333
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 103/234 (44%), Gaps = 21/234 (8%)
Query: 128 DLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFP 187
D++ DI+S + + L ++ + ++ +RF +F L ELDL+ G P
Sbjct: 234 DIDDEDISSAMLKGLCEMS-VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LP 291
Query: 188 YVVLGLPKLKFLDLRYNEFEG--KIPKALFDKDLDAVFINNNRFSFELP----DNIGNSP 241
+ GL LK L L N F+ +I A F L ++I N L + +GN
Sbjct: 292 SGMKGLNLLKKLVLSVNHFDQLCQISAANF-PSLTHLYIRGNVKKLHLGVGCLEKLGN-- 348
Query: 242 VSVLVLANNKFHG--CLPLSFGNMSRTLNEVILTNN---GLHSCLPEEIGLLKNVTVFDV 296
+ L L++N C L N+S L + L++N GL S +E L+ + D+
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSH-LQTLNLSHNEPLGLQSQAFKECPQLE---LLDL 404
Query: 297 SYNKLMGELPDT-IAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFF 349
++ +L P + + LQ LN+ + L + + LP LR+ + N F
Sbjct: 405 AFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHF 458
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 2/169 (1%)
Query: 156 NRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALF 215
NR ++F L L EL L NN Y +P L+ LDL + I +A F
Sbjct: 93 NRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAF 152
Query: 216 DKDLDAVFINNNRFSF-ELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTN 274
+ ++ ++N + ++P+ + L L+ N+ P SF ++ +L ++ L +
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLT-SLRKLWLMH 211
Query: 275 NGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHN 323
+ + LK++ ++S+N LM D + L+++++ HN
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 280 CLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSV 333
CLP + V V D+ N++M +P + + +LQ+LNVA N L +VPD V
Sbjct: 447 CLPPK------VKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDGV 492
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 13/89 (14%)
Query: 246 VLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLL-KNVT---VFDVSYNKL 301
V ++ F GC L + L +IL NGL + ++ L+ KN++ DVS N L
Sbjct: 364 VFTDSVFQGCSTL------KRLQTLILQRNGLKNFF--KVALMTKNMSSLETLDVSLNSL 415
Query: 302 MGELPD-TIAEMTSLQQLNVAHNMLSGTV 329
D T A S+ LN++ NML+G+V
Sbjct: 416 NSHAYDRTCAWAESILVLNLSSNMLTGSV 444
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 34/185 (18%)
Query: 131 HGDIASYLPE-ELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNN--------- 180
HG+ SY+P ++ + +++N G +F L LL +LDLS+N
Sbjct: 39 HGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPT 98
Query: 181 --RFAGKF--------------PYVVLGLPKLKFLDLRYNEFEGKIPKALFDK--DLDAV 222
R G P + GL L++L L+ N + +P F +L +
Sbjct: 99 TFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFRDLGNLTHL 157
Query: 223 FINNNRFSFELPDNI--GNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC 280
F++ NR +P++ G + L+L N P +F ++ R + + NN S
Sbjct: 158 FLHGNRIP-SVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANN--LSM 214
Query: 281 LPEEI 285
LP E+
Sbjct: 215 LPAEV 219
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 132 GDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVL 191
G+ + +P+EL + L ++ NR +SF+ + L L LS NR P
Sbjct: 40 GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99
Query: 192 GLPKLKFLDLRYNEFEGKIPKALFDKDLDAV 222
GL L+ L L N+ +P+ F+ DL A+
Sbjct: 100 GLKSLRLLSLHGNDIS-VVPEGAFN-DLSAL 128
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 210 IPKALFDKDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLN 268
+PK + +D+ ++++ N+F+ +P + N ++++ L+NN+ SF NM++ L
Sbjct: 25 LPKGI-PRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82
Query: 269 EVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNML 325
+IL+ N L P LK++ + + N + ++++L L + N L
Sbjct: 83 -LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKL 301
+ +V +NK LP + R + E+ L N + +P+E+ K++T+ D+S N++
Sbjct: 11 LDTVVRCSNKGLKVLP---KGIPRDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRI 66
Query: 302 MGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYN 347
+ + MT L L +++N L P + L +LR S N
Sbjct: 67 STLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 2/169 (1%)
Query: 156 NRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALF 215
NR ++F L L EL L NN Y +P L+ LDL + I +A F
Sbjct: 93 NRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAF 152
Query: 216 DKDLDAVFINNNRFSF-ELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTN 274
+ ++ ++N + ++P+ + L L+ N+ P SF ++ +L ++ L +
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLT-SLRKLWLMH 211
Query: 275 NGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHN 323
+ + LK++ ++S+N LM D + L+++++ HN
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 106/254 (41%), Gaps = 39/254 (15%)
Query: 101 GCYVCNYTGVFCA----QALDNHSIRTVAGIDLNHGDIASYLPEEL-GLLADIALFHVNT 155
GC+ C+ V C+ +A+ +DL + DI+ ++ GL AL VN
Sbjct: 30 GCH-CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN- 87
Query: 156 NRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALF 215
N+ ++F+ L+ L +L +S N P + L +L+ D R K+PK +F
Sbjct: 88 NKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIR----KVPKGVF 143
Query: 216 D--KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILT 273
++++ + + N +N G P F G L L++ +S E LT
Sbjct: 144 SGLRNMNCIEMGGNPL-----ENSGFEP--------GAFDG-LKLNYLRIS----EAKLT 185
Query: 274 NNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSV 333
G+ LPE + L + +NK+ + + + L +L + HN + S+
Sbjct: 186 --GIPKDLPETLNELH------LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237
Query: 334 CSLPNLRNFSFDYN 347
LP LR D N
Sbjct: 238 SFLPTLRELHLDNN 251
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 143 GLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLR 202
G+ + ++ NR P F++L L LDL NN+ V L +L L L
Sbjct: 27 GIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 203 YNEFEGKIPKALFD--KDLDAVFINNNRFSFELPD 235
N+ + IP+ FD + L +++ NN + D
Sbjct: 87 DNQLK-SIPRGAFDNLRSLTHIWLLNNPWDCACSD 120
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 155 TNRFCGTL-PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKA 213
+ F G++ R F L L LDLS N LGLP LK L L N+ + +P
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDG 389
Query: 214 LFDK--DLDAVFINNNRFSFELP 234
+FD+ L ++++ N + P
Sbjct: 390 IFDRLTSLQKIWLHTNPWDCSCP 412
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 26/208 (12%)
Query: 149 ALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFE- 207
A F +N RF L +FNK+K + E DL N F GK + +L L + D+ NE+
Sbjct: 147 ASFFLNMRRF-HVLDLTFNKVKSICEEDLLN--FQGKH-FTLLRLSSITLQDM--NEYWL 200
Query: 208 --GKIPKALFDKDLDAVFINNNRFSFELP----DNIGNSPVSVLVLANNKFHGCLPLSFG 261
K + + + ++ N F + D I + + L+L+N+ G SFG
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS---SFG 257
Query: 262 NMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVA 321
+ + + T GL + V D+S +K+ L + T L+QL +A
Sbjct: 258 HTNFK-DPDNFTFKGLEA---------SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307
Query: 322 HNMLSGTVPDSVCSLPNLRNFSFDYNFF 349
N ++ ++ L +L + NF
Sbjct: 308 QNEINKIDDNAFWGLTHLLKLNLSQNFL 335
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 82/198 (41%), Gaps = 30/198 (15%)
Query: 143 GLLADIALFHVNTNRFCGTLPRS-FNKLKLLFELDLSNN--RFAGKFPYVVLGLPKLKFL 199
G+ + + +N+ +LP F+KL L +L LS+N F G G LK+L
Sbjct: 25 GIPSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83
Query: 200 DLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLS 259
DL +N G I + L+ + F+ + S SV + N + L +S
Sbjct: 84 DLSFN---GVITMSSNFLGLEQL----EHLDFQHSNLKQMSEFSVFLSLRNLIY--LDIS 134
Query: 260 FGNMSRTLNEVILTNNGLHSC--------------LPEEIGLLKNVTVFDVSYNKLMGEL 305
+ N + NGL S LP+ L+N+T D+S +L
Sbjct: 135 HTHTRVAFNGIF---NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 191
Query: 306 PDTIAEMTSLQQLNVAHN 323
P ++SLQ LN++HN
Sbjct: 192 PTAFNSLSSLQVLNMSHN 209
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 143 GLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLR 202
G+ + ++ N+ P F++L L LDL NN+ V L +L L L
Sbjct: 27 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 203 YNEFEGKIPKALFD--KDLDAVFINNNRFSFELPD 235
N+ + IP+ FD K L +++ NN + D
Sbjct: 87 DNQLK-SIPRGAFDNLKSLTHIWLLNNPWDCACSD 120
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 30/184 (16%)
Query: 168 KLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYN--EFEGKIPKALFD----KDLDA 221
KLK L L ++N+ F V LP L+FLDL N F+G ++ F K LD
Sbjct: 347 KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDL 404
Query: 222 VF-----INNNRFSFELPDNIGNSPVSVLVLAN-NKFHGCLPLSFGNMSRTLNEVILTN- 274
F +++N E +++ ++ ++ + F L + ++S T V
Sbjct: 405 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 464
Query: 275 -NGLHSC--------------LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLN 319
NGL S LP+ L+N+T D+S +L P ++SLQ LN
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524
Query: 320 VAHN 323
++HN
Sbjct: 525 MSHN 528
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 24/154 (15%)
Query: 175 LDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELP 234
LDLS N Y P+L+ LDL E + + D ++
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-----TIEDGAYQSL------------ 99
Query: 235 DNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVF 294
S +S L+L N +F +S +L +++ L S IG LK +
Sbjct: 100 -----SHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKEL 153
Query: 295 DVSYNKLMG-ELPDTIAEMTSLQQLNVAHNMLSG 327
+V++N + +LP+ + +T+L+ L+++ N +
Sbjct: 154 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 309 IAEMTSLQQLNVAHNML-SGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQ 360
I + +L++LNVAHN++ S +P+ +L NL + N +S C DL+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN--KIQSIYCTDLR 194
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 143 GLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLR 202
G+ + ++ N+ P F++L L LDL NN+ V L +L L L
Sbjct: 35 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 94
Query: 203 YNEFEGKIPKALFD--KDLDAVFINNNRFSFELPD 235
N+ + IP+ FD K L +++ NN + D
Sbjct: 95 DNQLK-SIPRGAFDNLKSLTHIWLLNNPWDCACSD 128
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 30/184 (16%)
Query: 168 KLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYN--EFEGKIPKALFD----KDLDA 221
KLK L L ++N+ F V LP L+FLDL N F+G ++ F K LD
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380
Query: 222 VF-----INNNRFSFELPDNIGNSPVSVLVLAN-NKFHGCLPLSFGNMSRTLNEVILTN- 274
F +++N E +++ ++ ++ + F L + ++S T V
Sbjct: 381 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440
Query: 275 -NGLHSC--------------LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLN 319
NGL S LP+ L+N+T D+S +L P ++SLQ LN
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 320 VAHN 323
++HN
Sbjct: 501 MSHN 504
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 24/154 (15%)
Query: 175 LDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELP 234
LDLS N Y P+L+ LDL E + + D ++
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-----TIEDGAYQSL------------ 75
Query: 235 DNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVF 294
S +S L+L N +F +S +L +++ L S IG LK +
Sbjct: 76 -----SHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKEL 129
Query: 295 DVSYNKLMG-ELPDTIAEMTSLQQLNVAHNMLSG 327
+V++N + +LP+ + +T+L+ L+++ N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 309 IAEMTSLQQLNVAHNML-SGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQ 360
I + +L++LNVAHN++ S +P+ +L NL + N +S C DL+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN--KIQSIYCTDLR 170
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNML- 325
L+ +ILT N + S P L ++ KL I ++ +L++LNVAHN +
Sbjct: 82 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141
Query: 326 SGTVPDSVCSLPNLRNFSFDYNF 348
S +P +L NL + YN+
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNY 164
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNML- 325
L+ +ILT N + S P L ++ KL I ++ +L++LNVAHN +
Sbjct: 77 LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 136
Query: 326 SGTVPDSVCSLPNLRNFSFDYNF 348
S +P +L NL + YN+
Sbjct: 137 SCKLPAYFSNLTNLVHVDLSYNY 159
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKL 301
V L L NK H +S L +ILT N L S L N+ + N+L
Sbjct: 65 VRYLALGGNKLHD---ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 302 MGELPDTI-AEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYN 347
LPD + ++T+L LN+AHN L L NL YN
Sbjct: 122 QS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 245 LVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGE 304
LVL N+ LP + L + L +N L S L N+T D+SYN+L
Sbjct: 114 LVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS- 171
Query: 305 LPDTI-AEMTSLQQLNVAHNMLSGTVPDSV 333
LP+ + ++T L+ L + N L +VPD V
Sbjct: 172 LPEGVFDKLTQLKDLRLYQNQLK-SVPDGV 200
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEI-GLLKNVTVFDVSYNK 300
++ L+L N+ LP + L E++L N L S LP+ + L N+T ++++N+
Sbjct: 87 LTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQ 144
Query: 301 LMGELPDTIAEMTSLQQLNVAHNMLSG---TVPDSVCSLPNLR 340
L ++T+L +L++++N L V D + L +LR
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 161 TLPRS-FNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDK-- 217
+LP+ F+KL L ELDLS N+ V L +LK L L N+ + +P +FD+
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLT 205
Query: 218 DLDAVFINNNRFSFELP 234
L +++++N + P
Sbjct: 206 SLQYIWLHDNPWDCTCP 222
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 166 FNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDK 217
F+KL L L+L++N+ V L L LDL YN+ + +P+ +FDK
Sbjct: 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDK 179
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 7/128 (5%)
Query: 273 TNNGLHSCLPEEIGLLKNVTVFDVSYNKL--MGELPDTIAEMTSLQQLNVAHNMLSGTVP 330
+NN L + E G L + + N+L + ++ + +M SLQQL+++ N +S
Sbjct: 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391
Query: 331 DSVCSL-PNLRNFSFDYNFFTGESPVCL--DLQGFDDKRNCLRDKPRQRSTLQCRMFLSR 387
CS +L + + N T CL ++ D N ++ P+Q L+ L+
Sbjct: 392 KGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELN- 450
Query: 388 LVYCNTLK 395
V N LK
Sbjct: 451 -VASNQLK 457
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 133 DIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLG 192
+I + LPE I + N P +F+ K L +DLSNN+ + P G
Sbjct: 25 EIPTNLPET------ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78
Query: 193 LPKLKFLDLRYNEFEGKIPKALFD 216
L L L L N+ ++PK+LF+
Sbjct: 79 LRSLNSLVLYGNKIT-ELPKSLFE 101
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 133 DIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLG 192
+I + LPE I + N P +F+ K L +DLSNN+ + P G
Sbjct: 25 EIPTNLPET------ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78
Query: 193 LPKLKFLDLRYNEFEGKIPKALFD 216
L L L L N+ ++PK+LF+
Sbjct: 79 LRSLNSLVLYGNKIT-ELPKSLFE 101
>pdb|4GGI|A Chain A, Structure Of Lpxi D225a Mutant
Length = 283
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 25/138 (18%)
Query: 136 SYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPK 195
++ +LGL+A V C R+F ++L D S +R+ G
Sbjct: 1 GHMMRKLGLIAGGGALPVELASHCEAAGRAFAVMRLRSFADPSLDRYPGA---------- 50
Query: 196 LKFLDLRYNEFEGKIPKALFDKDLDAVFINNN----RFSFELPDNIGNSPVSVLVLANNK 251
D+ EF GKI KAL + D V N FS +PD G + L++A K
Sbjct: 51 ----DVGIGEF-GKIFKALRAEGCDVVCFAGNVSRPDFSALMPDARGLKVLPSLIVAARK 105
Query: 252 FHGCLPLSFGNMSRTLNE 269
L + R L+E
Sbjct: 106 GDDAL------LRRVLDE 117
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 145 LADIALFHVNTNRFCGTLPRS-FNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRY 203
L + +++TN+ +LP F+KL L EL L+ N+ V L +LK L L
Sbjct: 75 LTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133
Query: 204 NEFEGKIPKALFDK--DLDAVFINNNRFSFELP 234
N+ + +P +FD+ L +++++N + P
Sbjct: 134 NQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 7/133 (5%)
Query: 174 ELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDK--DLDAVFINNNRFSF 231
+LDL + A GL KL +L+L YN+ + + +FD +L + + NN+ +
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA- 96
Query: 232 ELPDNIGN--SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLK 289
LP + + + + L L N+ LP + L E+ L N L S L
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 290 NVTVFDVSYNKLM 302
N+ +S N+L
Sbjct: 156 NLQTLSLSTNQLQ 168
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 7/133 (5%)
Query: 174 ELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDK--DLDAVFINNNRFSF 231
+LDL + A GL KL +L+L YN+ + + +FD +L + + NN+ +
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA- 96
Query: 232 ELPDNIGN--SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLK 289
LP + + + + L L N+ LP + L E+ L N L S L
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 290 NVTVFDVSYNKLM 302
N+ +S N+L
Sbjct: 156 NLQTLSLSTNQLQ 168
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 24/154 (15%)
Query: 175 LDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELP 234
LDLS N Y P+L+ LDL E + + D ++
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQ-----TIEDGAYQSL------------ 76
Query: 235 DNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVF 294
S +S L+L N +F +S +L +++ L S IG LK +
Sbjct: 77 -----SHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKEL 130
Query: 295 DVSYNKLMG-ELPDTIAEMTSLQQLNVAHNMLSG 327
+V++N + +LP+ + +T+L+ L+++ N +
Sbjct: 131 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 309 IAEMTSLQQLNVAHNML-SGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQ 360
I + +L++LNVAHN++ S +P+ +L NL + N +S C DL+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI--QSIYCTDLR 171
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 24/154 (15%)
Query: 175 LDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELP 234
LDLS N Y P+L+ LDL E + + D ++
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQ-----TIEDGAYQSL------------ 77
Query: 235 DNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVF 294
S +S L+L N +F +S +L +++ L S IG LK +
Sbjct: 78 -----SHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKEL 131
Query: 295 DVSYNKLMG-ELPDTIAEMTSLQQLNVAHNMLSG 327
+V++N + +LP+ + +T+L+ L+++ N +
Sbjct: 132 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 309 IAEMTSLQQLNVAHNML-SGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQ 360
I + +L++LNVAHN++ S +P+ +L NL + N +S C DL+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI--QSIYCTDLR 172
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 26/226 (11%)
Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF 186
++L H +++ + ++ H+ +N F K K L LDLS+N +
Sbjct: 83 LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-- 140
Query: 187 PYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLV 246
LG KI +AL ++LD NS + L
Sbjct: 141 --TKLGTQVQLENLQELLLSNNKI-QALKSEELDI---------------FANSSLKKLE 182
Query: 247 LANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGL-LKNVTVFDVSY-NKLMGE 304
L++N+ P F + R L + L N L L E++ L L N ++ ++S N +
Sbjct: 183 LSSNQIKEFSPGCFHAIGR-LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 241
Query: 305 LPDTI---AEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYN 347
+T + T+L L++++N L+ DS LP L F +YN
Sbjct: 242 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 287
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 68/179 (37%), Gaps = 29/179 (16%)
Query: 191 LGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPD----NIGNSPVSVL 245
LG L+ LDL N + P L A+ +NN + + L + + N+ + L
Sbjct: 168 LGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNL 227
Query: 246 VLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGEL 305
LANN+ +F + T N+T D+SYN L
Sbjct: 228 SLANNQLLATSESTFSGLKWT-----------------------NLTQLDLSYNNLHDVG 264
Query: 306 PDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDD 364
+ + + SL+ L++ +N + P S L NLR S FT +S DD
Sbjct: 265 NGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLK-RAFTKQSVSLASHPNIDD 322
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS 326
L + L++N L S LP L +TV DVS+N+L + + LQ+L + N L
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 327 GTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDD 364
P + P L S N T E P L L G ++
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLT-ELPAGL-LNGLEN 173
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 120 SIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSN 179
++ + +DL+H + S LP L + + V+ NR + L L EL L
Sbjct: 75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 180 NRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLDAVFINNNRF 229
N P ++ PKL+ L L N+ ++P L + ++LD + + N
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS 326
L + L++N L S LP L +TV DVS+N+L + + LQ+L + N L
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 327 GTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDD 364
P + P L S N T E P L L G ++
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLT-ELPAGL-LNGLEN 173
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 120 SIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSN 179
++ + +DL+H + S LP L + + V+ NR + L L EL L
Sbjct: 75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 180 NRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLDAVFINNNRF 229
N P ++ PKL+ L L N+ ++P L + ++LD + + N
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 161 TLPRS-FNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDK 217
+LP+ F+KL L LDL NN+ V L +LK L L N+ + +P +FD+
Sbjct: 147 SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS-VPDGVFDR 203
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 245 LVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGE 304
LVL N+ LP + L + L +N L S L N+T D+ N+L
Sbjct: 114 LVLVENQLQS-LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS- 171
Query: 305 LPDTI-AEMTSLQQLNVAHNMLSGTVPDSV 333
LP+ + ++T L+QL++ N L +VPD V
Sbjct: 172 LPEGVFDKLTQLKQLSLNDNQLK-SVPDGV 200
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 24/154 (15%)
Query: 175 LDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELP 234
LDLS N Y P+L+ LDL E + + D ++
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-----TIEDGAYQSL------------ 75
Query: 235 DNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVF 294
S +S L+L N +F +S +L +++ L S IG LK +
Sbjct: 76 -----SHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKEL 129
Query: 295 DVSYNKLMG-ELPDTIAEMTSLQQLNVAHNMLSG 327
+V++N + +LP+ + +T+L+ L+++ N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 309 IAEMTSLQQLNVAHNML-SGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQ 360
I + +L++LNVAHN++ S +P+ +L NL + N +S C DL+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI--QSIYCTDLR 170
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 24/154 (15%)
Query: 175 LDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELP 234
LDLS N Y P+L+ LDL E + + D ++
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-----TIEDGAYQSL------------ 76
Query: 235 DNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVF 294
S +S L+L N +F +S +L +++ L S IG LK +
Sbjct: 77 -----SHLSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKEL 130
Query: 295 DVSYNKLMG-ELPDTIAEMTSLQQLNVAHNMLSG 327
+V++N + +LP+ + +T+L+ L+++ N +
Sbjct: 131 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 309 IAEMTSLQQLNVAHNML-SGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQ 360
I + +L++LNVAHN++ S +P+ +L NL + N +S C DL+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI--QSIYCTDLR 171
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 26/226 (11%)
Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF 186
++L H +++ + ++ H+ +N F K K L LDLS+N +
Sbjct: 78 LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-- 135
Query: 187 PYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLV 246
LG KI +AL ++LD NS + L
Sbjct: 136 --TKLGTQVQLENLQELLLSNNKI-QALKSEELDI---------------FANSSLKKLE 177
Query: 247 LANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGL-LKNVTVFDVSY-NKLMGE 304
L++N+ P F + R L + L N L L E++ L L N ++ ++S N +
Sbjct: 178 LSSNQIKEFSPGCFHAIGR-LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236
Query: 305 LPDTI---AEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYN 347
+T + T+L L++++N L+ DS LP L F +YN
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKL--MGELPDTIAEMTSLQQLNVAHNM 324
L +I TNN + P +G+L N+ ++ N+L +G T+A +T+L L++A+N
Sbjct: 200 LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQ 253
Query: 325 LSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC 356
+S P + L L N + SP+
Sbjct: 254 ISNLAP--LSGLTKLTELKLGANQISNISPLA 283
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 26/226 (11%)
Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF 186
++L H +++ + ++ H+ +N F K K L LDLS+N +
Sbjct: 88 LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-- 145
Query: 187 PYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLV 246
LG KI +AL ++LD NS + L
Sbjct: 146 --TKLGTQVQLENLQELLLSNNKI-QALKSEELDI---------------FANSSLKKLE 187
Query: 247 LANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGL-LKNVTVFDVSY-NKLMGE 304
L++N+ P F + R L + L N L L E++ L L N ++ ++S N +
Sbjct: 188 LSSNQIKEFSPGCFHAIGR-LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 246
Query: 305 LPDTI---AEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYN 347
+T + T+L L++++N L+ DS LP L F +YN
Sbjct: 247 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 292
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKL--MGELPDTIAEMTSLQQLNVAHNM 324
L +I TNN + P +G+L N+ ++ N+L +G T+A +T+L L++A+N
Sbjct: 197 LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQ 250
Query: 325 LSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC 356
+S P + L L N + SP+
Sbjct: 251 ISNLAP--LSGLTKLTELKLGANQISNISPLA 280
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKL--MGELPDTIAEMTSLQQLNVAHNM 324
L +I TNN + P +G+L N+ ++ N+L +G T+A +T+L L++A+N
Sbjct: 201 LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQ 254
Query: 325 LSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC 356
+S P + L L N + SP+
Sbjct: 255 ISNLAP--LSGLTKLTELKLGANQISNISPLA 284
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKL--MGELPDTIAEMTSLQQLNVAHNM 324
L +I TNN + P +G+L N+ ++ N+L +G T+A +T+L L++A+N
Sbjct: 196 LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQ 249
Query: 325 LSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC 356
+S P + L L N + SP+
Sbjct: 250 ISNLAP--LSGLTKLTELKLGANQISNISPLA 279
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS 326
L + L++N L S LP L +TV DVS+N+L + + LQ+L + N L
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 327 GTVPDSVCSLPNLRNFSFDYNFFT 350
P + P L S N T
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLT 161
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 120 SIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSN 179
++ + +DL+H + S LP L + + V+ NR + L L EL L
Sbjct: 75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 180 NRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLDAVFINNNRF 229
N P ++ PKL+ L L N+ ++P L + ++LD + + N
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKL--MGELPDTIAEMTSLQQLNVAHNM 324
L +I TNN + P +G+L N+ ++ N+L +G T+A +T+L L++A+N
Sbjct: 197 LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQ 250
Query: 325 LSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC 356
+S P + L L N + SP+
Sbjct: 251 ISNLAP--LSGLTKLTELKLGANQISNISPLA 280
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKL--MGELPDTIAEMTSLQQLNVAHNM 324
L +I TNN + P +G+L N+ ++ N+L +G T+A +T+L L++A+N
Sbjct: 196 LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQ 249
Query: 325 LSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC 356
+S P + L L N + SP+
Sbjct: 250 ISNLAP--LSGLTKLTELKLGANQISNISPLA 279
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS 326
L + L++N L S LP L +TV DVS+N+L + + LQ+L + N L
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 327 GTVPDSVCSLPNLRNFSFDYNFFT 350
P + P L S N T
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLT 161
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 120 SIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSN 179
++ + +DL+H + S LP L + + V+ NR + L L EL L
Sbjct: 75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 180 NRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLDAVFINNNRF 229
N P ++ PKL+ L L N+ ++P L + ++LD + + N
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKL--MGELPDTIAEMTSLQQLNVAHNM 324
L +I TNN + P +G+L N+ ++ N+L +G T+A +T+L L++A+N
Sbjct: 197 LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQ 250
Query: 325 LSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC 356
+S P + L L N + SP+
Sbjct: 251 ISNLAP--LSGLTKLTELKLGANQISNISPLA 280
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS 326
L + L++N L S LP L +TV DVS+N+L + + LQ+L + N L
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 327 GTVPDSVCSLPNLRNFSFDYNFFT 350
P + P L S N T
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNDLT 161
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 120 SIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSN 179
++ + +DL+H + S LP L + + V+ NR + L L EL L
Sbjct: 75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 180 NRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLDAVFINNNRF 229
N P ++ PKL+ L L N+ ++P L + ++LD + + N
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 59/148 (39%), Gaps = 13/148 (8%)
Query: 209 KIPKALFDKDLDAVFINNNRFSFELPDNIG---NSPVSVLVLANNKFHGCLPLSFGNMSR 265
K+P AL D +N N E D + L + N P F N+
Sbjct: 65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP- 123
Query: 266 TLNEVILTNNGLHSCLPEEIGLLKN---VTVFDVSYNKLMGELPDTIAEMTSLQQLNVAH 322
L ++L N L S LP G+ N +T +S N L DT TSLQ L ++
Sbjct: 124 LLTVLVLERNDL-SSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180
Query: 323 NMLSGTVPDSVCSLPNLRNFSFDYNFFT 350
N L+ + +P+L + + YN +
Sbjct: 181 NRLTHV---DLSLIPSLFHANVSYNLLS 205
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS 326
L + L++N L S LP L +TV DVS+N+L + + LQ+L + N L
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 327 GTVPDSVCSLPNLRNFSFDYNFFT 350
P + P L S N T
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS 326
L + L++N L S LP L +TV DVS+N+L + + LQ+L + N L
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 327 GTVPDSVCSLPNLRNFSFDYNFFT 350
P + P L S N T
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 24/154 (15%)
Query: 175 LDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELP 234
LDLS N Y P+L+ LDL E + + D ++
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-----TIEDGAYQSL------------ 77
Query: 235 DNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVF 294
S +S L+L N +F +S +L +++ L S IG LK +
Sbjct: 78 -----SHLSTLILTGNPIQSLALGAFSGLS-SLQKLVALETNLASLENFPIGHLKTLKEL 131
Query: 295 DVSYNKLMG-ELPDTIAEMTSLQQLNVAHNMLSG 327
+V++N + +LP+ + +T+L+ L+++ N +
Sbjct: 132 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 309 IAEMTSLQQLNVAHNML-SGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQ 360
I + +L++LNVAHN++ S +P+ +L NL + N +S C DL+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI--QSIYCTDLR 172
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS 326
L + L++N L S LP L +TV DVS+N+L + + LQ+L + N L
Sbjct: 80 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 138
Query: 327 GTVPDSVCSLPNLRNFSFDYNFFT 350
P + P L S N T
Sbjct: 139 TLPPGLLTPTPKLEKLSLANNNLT 162
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS 326
L + L++N L S LP L +TV DVS+N+L + + LQ+L + N L
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 327 GTVPDSVCSLPNLRNFSFDYNFFT 350
P + P L S N T
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS 326
L + L++N L S LP L +TV DVS+N+L + + LQ+L + N L
Sbjct: 79 LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 327 GTVPDSVCSLPNLRNFSFDYNFFT 350
P + P L S N T
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 59/148 (39%), Gaps = 13/148 (8%)
Query: 209 KIPKALFDKDLDAVFINNNRFSFELPDNIG---NSPVSVLVLANNKFHGCLPLSFGNMSR 265
K+P AL D +N N E D + L + N P F N+
Sbjct: 59 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP- 117
Query: 266 TLNEVILTNNGLHSCLPEEIGLLKN---VTVFDVSYNKLMGELPDTIAEMTSLQQLNVAH 322
L ++L N L S LP G+ N +T +S N L DT TSLQ L ++
Sbjct: 118 LLTVLVLERNDL-SSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174
Query: 323 NMLSGTVPDSVCSLPNLRNFSFDYNFFT 350
N L+ + +P+L + + YN +
Sbjct: 175 NRLTHV---DLSLIPSLFHANVSYNLLS 199
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 92/229 (40%), Gaps = 51/229 (22%)
Query: 109 GVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNK 168
G C + L+N + +DL+H DI + +D C L
Sbjct: 341 GTRCLEKLEN-----LQKLDLSHSDIEA---------SD-----------CCNL--QLKN 373
Query: 169 LKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNR 228
L+ L L+LS N G P+L+ LD+ + K P + F ++L + + N
Sbjct: 374 LRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPF-QNLHLLRVLN-- 430
Query: 229 FSFELPDN------IGNSPVSVLVLANNKFHGCLPLSFGNMSRT--------LNEVILTN 274
S L D G + L L N F G++S+T L +IL++
Sbjct: 431 LSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQD------GSISKTNLLQMVGSLEILILSS 484
Query: 275 NGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHN 323
L S + L+NV D+S+N L G+ D ++ + L LN+A N
Sbjct: 485 CNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASN 532
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,131,328
Number of Sequences: 62578
Number of extensions: 511528
Number of successful extensions: 1462
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1136
Number of HSP's gapped (non-prelim): 235
length of query: 500
length of database: 14,973,337
effective HSP length: 103
effective length of query: 397
effective length of database: 8,527,803
effective search space: 3385537791
effective search space used: 3385537791
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)