Query 041736
Match_columns 500
No_of_seqs 584 out of 5044
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 10:06:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041736.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041736hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 8.2E-36 1.8E-40 337.9 26.9 274 93-373 45-348 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.5E-29 5.3E-34 285.1 19.4 251 120-371 138-394 (968)
3 KOG4194 Membrane glycoprotein 99.9 3.6E-25 7.8E-30 218.9 2.8 249 122-372 173-431 (873)
4 KOG4194 Membrane glycoprotein 99.9 3.1E-24 6.8E-29 212.3 7.3 249 122-373 78-333 (873)
5 KOG0444 Cytoskeletal regulator 99.9 5.3E-24 1.1E-28 212.0 -0.5 243 122-371 32-282 (1255)
6 KOG0444 Cytoskeletal regulator 99.8 2.6E-23 5.7E-28 207.1 -5.0 264 122-394 55-351 (1255)
7 KOG0472 Leucine-rich repeat pr 99.8 1.7E-22 3.8E-27 192.1 -1.3 243 121-370 182-541 (565)
8 KOG0472 Leucine-rich repeat pr 99.8 5.9E-23 1.3E-27 195.2 -7.2 243 118-370 64-310 (565)
9 PRK15370 E3 ubiquitin-protein 99.8 9.7E-20 2.1E-24 195.7 15.6 223 123-371 179-402 (754)
10 KOG0618 Serine/threonine phosp 99.8 8E-21 1.7E-25 197.5 -2.2 238 122-368 241-487 (1081)
11 PRK15370 E3 ubiquitin-protein 99.8 1.4E-18 3.1E-23 186.7 12.7 224 122-371 199-429 (754)
12 PLN03210 Resistant to P. syrin 99.8 3.5E-17 7.6E-22 187.1 20.8 221 120-350 609-859 (1153)
13 PRK15387 E3 ubiquitin-protein 99.8 1.9E-17 4.1E-22 177.2 17.3 216 125-372 204-437 (788)
14 PLN03210 Resistant to P. syrin 99.7 5.3E-17 1.1E-21 185.7 20.1 239 119-368 631-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.7 2.8E-17 6.2E-22 175.8 14.6 221 122-375 222-463 (788)
16 cd00116 LRR_RI Leucine-rich re 99.7 1.5E-18 3.3E-23 171.9 2.5 229 122-351 23-292 (319)
17 cd00116 LRR_RI Leucine-rich re 99.7 1.5E-18 3.3E-23 172.0 2.4 246 126-372 2-293 (319)
18 KOG0617 Ras suppressor protein 99.7 4.4E-19 9.6E-24 150.6 -3.8 164 120-335 31-194 (264)
19 KOG4237 Extracellular matrix p 99.7 7.6E-19 1.7E-23 167.2 -4.8 249 122-370 67-359 (498)
20 KOG0617 Ras suppressor protein 99.7 7.8E-19 1.7E-23 149.2 -4.7 162 143-356 30-192 (264)
21 KOG0618 Serine/threonine phosp 99.6 9.8E-18 2.1E-22 174.8 -2.3 220 121-348 263-487 (1081)
22 PLN03150 hypothetical protein; 99.6 4.7E-15 1E-19 158.8 15.1 154 73-230 369-528 (623)
23 KOG4237 Extracellular matrix p 99.6 2.5E-17 5.4E-22 157.0 -2.5 244 147-392 68-361 (498)
24 KOG0532 Leucine-rich repeat (L 99.4 7E-15 1.5E-19 146.4 -3.9 194 145-348 74-271 (722)
25 KOG0532 Leucine-rich repeat (L 99.3 3.7E-14 8E-19 141.3 -3.7 192 122-323 75-270 (722)
26 COG4886 Leucine-rich repeat (L 99.3 1.7E-12 3.7E-17 132.7 7.8 195 126-330 97-294 (394)
27 PLN03150 hypothetical protein; 99.3 1.4E-11 3.1E-16 132.1 9.3 89 267-355 420-508 (623)
28 COG4886 Leucine-rich repeat (L 99.2 1.3E-11 2.9E-16 126.0 6.6 182 121-310 115-298 (394)
29 KOG1909 Ran GTPase-activating 99.2 5.6E-12 1.2E-16 119.2 0.8 87 121-207 29-133 (382)
30 KOG3207 Beta-tubulin folding c 99.2 4.6E-12 9.9E-17 122.9 -0.3 207 144-352 119-341 (505)
31 KOG1259 Nischarin, modulator o 99.1 5.1E-11 1.1E-15 110.4 2.8 128 241-375 285-417 (490)
32 KOG1909 Ran GTPase-activating 99.1 4.3E-11 9.2E-16 113.3 1.4 230 140-370 24-311 (382)
33 KOG1259 Nischarin, modulator o 99.0 1E-10 2.2E-15 108.5 2.5 208 138-355 206-417 (490)
34 KOG3207 Beta-tubulin folding c 99.0 7.2E-11 1.6E-15 114.7 0.9 203 167-372 118-341 (505)
35 KOG0531 Protein phosphatase 1, 98.9 6.5E-11 1.4E-15 121.5 -2.2 104 122-230 72-175 (414)
36 PF14580 LRR_9: Leucine-rich r 98.9 8.7E-10 1.9E-14 97.8 4.5 81 267-350 44-126 (175)
37 KOG0531 Protein phosphatase 1, 98.9 1.7E-10 3.7E-15 118.4 -2.2 82 121-207 94-175 (414)
38 PF14580 LRR_9: Leucine-rich r 98.9 2.8E-09 6.1E-14 94.6 5.7 137 202-345 5-148 (175)
39 PF13855 LRR_8: Leucine rich r 98.8 4.8E-09 1E-13 76.5 3.1 60 147-206 2-61 (61)
40 KOG1859 Leucine-rich repeat pr 98.8 1.4E-10 3.1E-15 118.9 -6.9 128 240-374 164-296 (1096)
41 PF13855 LRR_8: Leucine rich r 98.7 9.6E-09 2.1E-13 74.9 2.8 61 122-182 1-61 (61)
42 COG5238 RNA1 Ran GTPase-activa 98.6 1.5E-08 3.3E-13 93.0 1.1 109 122-230 30-170 (388)
43 KOG4658 Apoptotic ATPase [Sign 98.5 1.2E-07 2.5E-12 104.6 6.3 106 122-228 545-653 (889)
44 KOG4658 Apoptotic ATPase [Sign 98.5 1E-07 2.2E-12 105.1 5.1 126 122-250 523-652 (889)
45 COG5238 RNA1 Ran GTPase-activa 98.4 1.5E-07 3.2E-12 86.7 3.3 213 140-353 24-288 (388)
46 KOG2120 SCF ubiquitin ligase, 98.4 5.3E-09 1.1E-13 97.2 -6.4 59 286-346 310-372 (419)
47 KOG2120 SCF ubiquitin ligase, 98.4 8.2E-09 1.8E-13 96.0 -5.6 74 266-341 314-391 (419)
48 KOG1859 Leucine-rich repeat pr 98.3 6E-09 1.3E-13 107.3 -8.3 175 119-302 106-292 (1096)
49 KOG2982 Uncharacterized conser 98.2 3.5E-07 7.6E-12 85.3 0.2 77 267-343 201-285 (418)
50 KOG4579 Leucine-rich repeat (L 98.1 3.7E-07 8E-12 75.7 -0.4 108 120-231 51-160 (177)
51 KOG4579 Leucine-rich repeat (L 98.1 1.2E-07 2.7E-12 78.4 -3.5 78 269-348 57-134 (177)
52 PRK15386 type III secretion pr 98.0 2.9E-05 6.4E-10 77.5 8.8 137 140-299 46-187 (426)
53 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.5E-10 54.0 3.8 36 171-207 2-37 (44)
54 KOG2982 Uncharacterized conser 97.9 1.4E-06 3.1E-11 81.3 -0.9 210 123-353 46-265 (418)
55 PF08263 LRRNT_2: Leucine rich 97.9 2E-05 4.4E-10 52.6 4.0 38 76-113 3-43 (43)
56 PF12799 LRR_4: Leucine Rich r 97.8 2.2E-05 4.8E-10 52.6 3.6 35 291-326 3-37 (44)
57 PRK15386 type III secretion pr 97.7 0.00018 3.8E-09 72.1 9.1 132 122-276 52-188 (426)
58 KOG1644 U2-associated snRNP A' 97.5 0.00021 4.7E-09 63.5 5.9 90 260-352 37-128 (233)
59 KOG1644 U2-associated snRNP A' 97.3 0.00034 7.3E-09 62.3 5.0 82 123-207 43-126 (233)
60 KOG3665 ZYG-1-like serine/thre 97.3 0.0001 2.2E-09 79.7 1.8 110 240-352 148-265 (699)
61 KOG3665 ZYG-1-like serine/thre 97.0 0.00016 3.6E-09 78.1 0.2 132 122-255 122-265 (699)
62 KOG3671 Actin regulatory prote 96.6 0.022 4.8E-07 57.0 11.5 36 97-135 55-90 (569)
63 KOG2123 Uncharacterized conser 96.6 0.00015 3.2E-09 67.5 -3.6 89 121-213 18-107 (388)
64 KOG2739 Leucine-rich acidic nu 96.3 0.0029 6.2E-08 58.7 3.2 61 145-207 42-104 (260)
65 KOG2739 Leucine-rich acidic nu 96.3 0.0026 5.6E-08 59.0 2.7 82 241-326 44-129 (260)
66 KOG3671 Actin regulatory prote 96.3 0.05 1.1E-06 54.6 11.4 13 32-44 19-31 (569)
67 KOG2123 Uncharacterized conser 96.1 0.00047 1E-08 64.3 -3.0 96 242-343 21-123 (388)
68 PF13306 LRR_5: Leucine rich r 95.8 0.031 6.7E-07 46.9 7.0 54 123-178 13-66 (129)
69 KOG4308 LRR-containing protein 95.8 7.1E-05 1.5E-09 77.4 -11.1 83 124-206 89-184 (478)
70 KOG4308 LRR-containing protein 95.4 0.00017 3.7E-09 74.6 -10.2 84 147-230 88-185 (478)
71 PF00560 LRR_1: Leucine Rich R 95.2 0.0078 1.7E-07 33.6 0.8 17 291-308 2-18 (22)
72 PF00560 LRR_1: Leucine Rich R 95.1 0.0082 1.8E-07 33.5 0.7 18 172-190 2-19 (22)
73 PF13306 LRR_5: Leucine rich r 94.8 0.076 1.6E-06 44.5 6.1 105 140-249 6-112 (129)
74 KOG4341 F-box protein containi 94.4 0.0029 6.4E-08 62.3 -4.0 245 122-366 138-435 (483)
75 KOG0473 Leucine-rich repeat pr 93.5 0.0019 4.2E-08 58.7 -6.5 88 118-208 38-125 (326)
76 PF13504 LRR_7: Leucine rich r 91.6 0.11 2.5E-06 26.8 1.3 11 172-182 3-13 (17)
77 KOG0473 Leucine-rich repeat pr 91.4 0.0064 1.4E-07 55.5 -6.0 81 267-350 44-124 (326)
78 KOG1947 Leucine rich repeat pr 91.1 0.035 7.6E-07 58.0 -1.9 16 309-324 358-373 (482)
79 KOG1947 Leucine rich repeat pr 90.8 0.032 6.8E-07 58.3 -2.7 19 284-302 357-375 (482)
80 smart00370 LRR Leucine-rich re 90.0 0.29 6.2E-06 28.3 2.2 14 194-207 2-15 (26)
81 smart00369 LRR_TYP Leucine-ric 90.0 0.29 6.2E-06 28.3 2.2 14 194-207 2-15 (26)
82 KOG3864 Uncharacterized conser 87.8 0.1 2.2E-06 46.9 -1.2 82 123-204 102-186 (221)
83 smart00369 LRR_TYP Leucine-ric 85.9 0.74 1.6E-05 26.5 2.2 15 169-183 1-15 (26)
84 smart00370 LRR Leucine-rich re 85.9 0.74 1.6E-05 26.5 2.2 15 169-183 1-15 (26)
85 KOG4242 Predicted myosin-I-bin 84.3 2.3 5.1E-05 43.2 6.1 60 290-349 414-480 (553)
86 PF13516 LRR_6: Leucine Rich r 84.0 0.28 6.1E-06 27.7 -0.2 15 289-303 2-16 (24)
87 KOG4242 Predicted myosin-I-bin 81.6 4 8.7E-05 41.6 6.5 85 266-350 355-453 (553)
88 KOG3864 Uncharacterized conser 81.2 0.21 4.6E-06 44.9 -2.2 82 240-322 101-185 (221)
89 smart00365 LRR_SD22 Leucine-ri 77.8 1.7 3.6E-05 25.3 1.6 14 289-302 2-15 (26)
90 KOG0132 RNA polymerase II C-te 75.2 32 0.0007 37.3 11.1 6 315-320 448-453 (894)
91 smart00368 LRR_RI Leucine rich 67.3 4.5 9.7E-05 23.8 1.7 14 170-183 2-15 (28)
92 smart00364 LRR_BAC Leucine-ric 63.6 4.6 0.0001 23.4 1.2 16 195-211 3-18 (26)
93 KOG3763 mRNA export factor TAP 53.4 7.1 0.00015 40.7 1.5 59 267-327 220-284 (585)
94 KOG4341 F-box protein containi 51.4 7 0.00015 39.3 1.0 60 170-229 268-332 (483)
95 KOG3763 mRNA export factor TAP 41.5 17 0.00038 37.9 2.1 65 286-352 215-285 (585)
96 PRK15313 autotransport protein 38.9 99 0.0022 34.8 7.4 6 37-42 46-51 (955)
97 PRK09718 hypothetical protein; 31.0 87 0.0019 32.5 5.1 13 290-302 229-241 (512)
98 COG5353 Uncharacterized protei 27.5 71 0.0015 27.3 3.1 13 32-44 32-44 (161)
99 KOG1665 AFH1-interacting prote 26.6 96 0.0021 28.5 4.0 9 295-303 262-270 (302)
100 PRK09718 hypothetical protein; 24.5 1.3E+02 0.0027 31.4 4.9 13 267-279 230-242 (512)
101 TIGR00864 PCC polycystin catio 24.1 53 0.0011 41.4 2.5 32 152-183 1-32 (2740)
102 KOG0162 Myosin class I heavy c 23.5 4.2E+02 0.0092 29.1 8.5 16 66-81 405-420 (1106)
103 smart00367 LRR_CC Leucine-rich 22.8 59 0.0013 18.4 1.4 10 171-180 3-12 (26)
104 TIGR00864 PCC polycystin catio 20.0 71 0.0015 40.3 2.5 33 295-327 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.2e-36 Score=337.87 Aligned_cols=274 Identities=30% Similarity=0.481 Sum_probs=172.6
Q ss_pred CCCCCCCC-CCCCCCcCceecCCCCCCCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCcccc-CCC
Q 041736 93 WNLTSNWV-GCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFN-KLK 170 (500)
Q Consensus 93 ~~~~~~w~-~~~~c~~~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~ 170 (500)
.....+|. ..+||.|.||.|+.. .+|+.|||++|++.+.++..|..+++|++|+|++|.+++.+|..+. .+.
T Consensus 45 ~~~~~~w~~~~~~c~w~gv~c~~~------~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~ 118 (968)
T PLN00113 45 LKYLSNWNSSADVCLWQGITCNNS------SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSS 118 (968)
T ss_pred cccCCCCCCCCCCCcCcceecCCC------CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCC
Confidence 34456675 468999999999632 4677777777777777777777777777777777777766665543 566
Q ss_pred CCCEEeCcCCcCCC----------------------cCchhccCCCCCcEEeccCCcCCCCCchhhcC-CCCCeEEccCC
Q 041736 171 LLFELDLSNNRFAG----------------------KFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNN 227 (500)
Q Consensus 171 ~L~~L~Ls~n~l~~----------------------~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n 227 (500)
+|++|+|++|++++ .+|..++++++|++|+|++|.+.+.+|..+.. .+|++|++++|
T Consensus 119 ~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 198 (968)
T PLN00113 119 SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198 (968)
T ss_pred CCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC
Confidence 66666666665554 44444555555555555555555555544433 45555555555
Q ss_pred CccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCCh
Q 041736 228 RFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELP 306 (500)
Q Consensus 228 ~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 306 (500)
++++.+|..++. .+|++|++++|.+.+.+|..++++.+ |++|++++|++.+.+|..++++++|++|+|++|++++.+|
T Consensus 199 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 277 (968)
T PLN00113 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS-LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277 (968)
T ss_pred CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCC-CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc
Confidence 555555554443 45666666666666666666666654 6666666666666666666666666666666666666666
Q ss_pred hhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCC----ccCCEEEcCCCCCCCCC
Q 041736 307 DTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC----LDLQGFDDKRNCLRDKP 373 (500)
Q Consensus 307 ~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~----~~L~~l~l~~N~l~~~~ 373 (500)
..+.++.+|++|+|++|.+.+.+|..+.++++|++|++++|.+++.++.. .+|+.|++++|.+.+..
T Consensus 278 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 348 (968)
T PLN00113 278 PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348 (968)
T ss_pred hhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC
Confidence 66666666666666666666666666666666666666666666665542 35667777777766543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=2.5e-29 Score=285.08 Aligned_cols=251 Identities=26% Similarity=0.434 Sum_probs=177.9
Q ss_pred CcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEE
Q 041736 120 SIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFL 199 (500)
Q Consensus 120 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 199 (500)
.+.+|+.|+|++|.+.+.+|..++++.+|++|+|++|.+++.+|..++++++|++|+|++|++.+.+|..+.++++|++|
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 35566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred eccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCC
Q 041736 200 DLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGL 277 (500)
Q Consensus 200 ~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l 277 (500)
+|++|++++.+|..+.. .+|++|++++|++++.+|..++. .+|++|++++|.+.+.+|..+.++.+ |++|++++|.+
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l 296 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK-LISLDLSDNSL 296 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccC-cCEEECcCCee
Confidence 77777777777766655 67777777777777777766654 56777777777777777777777765 77777777777
Q ss_pred CCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCC-
Q 041736 278 HSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC- 356 (500)
Q Consensus 278 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~- 356 (500)
.+.+|..+.++++|++|++++|.+++.+|..+..+++|+.|+|++|.+.+.+|..+..+.+|+.|++++|++++.+|..
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 376 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH
Confidence 7777777777777777777777777777777777777777777777777777766767777777777777766655542
Q ss_pred ---ccCCEEEcCCCCCCC
Q 041736 357 ---LDLQGFDDKRNCLRD 371 (500)
Q Consensus 357 ---~~L~~l~l~~N~l~~ 371 (500)
..++.|++++|.+.+
T Consensus 377 ~~~~~L~~L~l~~n~l~~ 394 (968)
T PLN00113 377 CSSGNLFKLILFSNSLEG 394 (968)
T ss_pred hCcCCCCEEECcCCEecc
Confidence 134445555554443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=3.6e-25 Score=218.88 Aligned_cols=249 Identities=21% Similarity=0.271 Sum_probs=185.5
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL 201 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 201 (500)
.++++|+|++|.|+..--..|..+.+|.+|.|+.|+++..-...|.+|.+|+.|+|..|+|.-.---.|.+|.+|+.|.|
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 35666777777776655566666667777777777776444455666777777777777766222345666777777777
Q ss_pred cCCcCCCCCchhhcC--CCCCeEEccCCCccCCCCCc-cCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCC
Q 041736 202 RYNEFEGKIPKALFD--KDLDAVFINNNRFSFELPDN-IGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLH 278 (500)
Q Consensus 202 s~N~l~g~~p~~~~~--~~L~~L~l~~n~l~~~~p~~-~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~ 278 (500)
..|+++ .+.+..|- .++++|+|+.|++...-..+ ++.++|+.|+|++|.|.....+.+....+ |++|+|++|+|+
T Consensus 253 qrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk-L~~LdLs~N~i~ 330 (873)
T KOG4194|consen 253 QRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK-LKELDLSSNRIT 330 (873)
T ss_pred hhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccc-ceeEeccccccc
Confidence 777776 44443333 78888999999887544444 34578999999999998888888888776 999999999999
Q ss_pred CCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCch---hhcCCCCCcEEEccCCcCccCCCC
Q 041736 279 SCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPD---SVCSLPNLRNFSFDYNFFTGESPV 355 (500)
Q Consensus 279 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~---~l~~l~~L~~L~Ls~N~l~g~~p~ 355 (500)
...++.|..|..|++|+|++|.++..-...|..+.+|++|||++|.|+..|-+ .|..+++|+.|+|.+|++....-.
T Consensus 331 ~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr 410 (873)
T KOG4194|consen 331 RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR 410 (873)
T ss_pred cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchh
Confidence 88888899999999999999998865556788889999999999998876643 577889999999999998754433
Q ss_pred ----CccCCEEEcCCCCCCCC
Q 041736 356 ----CLDLQGFDDKRNCLRDK 372 (500)
Q Consensus 356 ----~~~L~~l~l~~N~l~~~ 372 (500)
...|+.||+.+|.+...
T Consensus 411 Afsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 411 AFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred hhccCcccceecCCCCcceee
Confidence 33688999999988643
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=3.1e-24 Score=212.27 Aligned_cols=249 Identities=19% Similarity=0.225 Sum_probs=187.0
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL 201 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 201 (500)
...+.||+++|.+..+-...|.++.+|+.++|..|.++ .||.......+|+.|+|.+|.|+..-...+..+..|+.|||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 34678999999999998899999999999999999998 88876666777999999999999877888999999999999
Q ss_pred cCCcCCCCCchhhcC--CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCC
Q 041736 202 RYNEFEGKIPKALFD--KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLH 278 (500)
Q Consensus 202 s~N~l~g~~p~~~~~--~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~ 278 (500)
|.|.|+ .++...+. .++++|+|++|+|+..--..+.. .+|..|.|+.|+++..-...|.++.+ |+.|+|..|.|.
T Consensus 157 SrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~-L~~LdLnrN~ir 234 (873)
T KOG4194|consen 157 SRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK-LESLDLNRNRIR 234 (873)
T ss_pred hhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch-hhhhhcccccee
Confidence 999998 77766655 69999999999998543333332 57889999999999655567777887 999999888887
Q ss_pred CCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC---
Q 041736 279 SCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV--- 355 (500)
Q Consensus 279 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~--- 355 (500)
-.--.+|.+|.+|+.|.|..|+|+..--..|..+.++++|+|..|+++..--.++.+++.|+.|+||+|.|...-..
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence 54345666777777777777766644444555666666666666666644445566666666666666666544433
Q ss_pred -CccCCEEEcCCCCCCCCC
Q 041736 356 -CLDLQGFDDKRNCLRDKP 373 (500)
Q Consensus 356 -~~~L~~l~l~~N~l~~~~ 373 (500)
+..|++|++++|.++...
T Consensus 315 ftqkL~~LdLs~N~i~~l~ 333 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLD 333 (873)
T ss_pred hcccceeEeccccccccCC
Confidence 334666666666665543
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=5.3e-24 Score=211.97 Aligned_cols=243 Identities=22% Similarity=0.367 Sum_probs=134.2
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCC-cCchhccCCCCCcEEe
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAG-KFPYVVLGLPKLKFLD 200 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~ 200 (500)
.+++.|.|....+.. +|++++.+.+|++|.+++|++. .+-.+++.|+.|+.+++.+|++.. -+|..+..|..|..||
T Consensus 32 t~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD 109 (1255)
T ss_pred hheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence 455555565555532 5666666666666666666665 344455566666666666666542 2555566666677777
Q ss_pred ccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCcc--CCCCcceEEeccccccccCchhhhcccccCcEEEeccCCC
Q 041736 201 LRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNI--GNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGL 277 (500)
Q Consensus 201 Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~--~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l 277 (500)
||+|+++ ..|..+-. +++-+|+|++|+|. .||..+ ....|-.|+|++|++. .+|..+..+.. |+.|+|++|-+
T Consensus 110 LShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~-LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 110 LSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSM-LQTLKLSNNPL 185 (1255)
T ss_pred cchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhh-hhhhhcCCChh
Confidence 7777666 55555443 56666777777665 344432 2255666677777666 56666666665 66666666654
Q ss_pred CCCCccccccCCCccEEeccCcccC-CCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccC---C
Q 041736 278 HSCLPEEIGLLKNVTVFDVSYNKLM-GELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGE---S 353 (500)
Q Consensus 278 ~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~---~ 353 (500)
.-.--..+-.+++|++|.+++.+-+ ..+|.++..+.+|..+||+.|.+. .+|+.+.++.+|+.|+||+|+|+.. +
T Consensus 186 ~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~ 264 (1255)
T KOG0444|consen 186 NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTE 264 (1255)
T ss_pred hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccH
Confidence 3221111222233333333333211 134555555566666666666665 5566666666666666666655422 1
Q ss_pred CCCccCCEEEcCCCCCCC
Q 041736 354 PVCLDLQGFDDKRNCLRD 371 (500)
Q Consensus 354 p~~~~L~~l~l~~N~l~~ 371 (500)
..+.++++|++|.|.++.
T Consensus 265 ~~W~~lEtLNlSrNQLt~ 282 (1255)
T KOG0444|consen 265 GEWENLETLNLSRNQLTV 282 (1255)
T ss_pred HHHhhhhhhccccchhcc
Confidence 223345555555555543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=2.6e-23 Score=207.05 Aligned_cols=264 Identities=30% Similarity=0.400 Sum_probs=150.2
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCC-ccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFC-GTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD 200 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 200 (500)
.+|++|.+++|++.. +..+++.|+.|+.+++.+|++. .-||..+..|..|.+||||+|++. ..|..+..-+++-+|+
T Consensus 55 qkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLN 132 (1255)
T ss_pred hhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEE
Confidence 445555555555533 2234445555555555555553 224444555555555555555555 4555555555555555
Q ss_pred ccCCcCCCCCchhhcC--CCCCeEEccCCCccCCCCCccCCCCcceEEecccccc-------------------------
Q 041736 201 LRYNEFEGKIPKALFD--KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFH------------------------- 253 (500)
Q Consensus 201 Ls~N~l~g~~p~~~~~--~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~------------------------- 253 (500)
||+|+|. .||..++. ..|-.|+|++|++...-|..-....|++|+|++|.+.
T Consensus 133 LS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 133 LSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred cccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence 5555554 45544443 4455555555555422222112234444444444432
Q ss_pred ccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhh
Q 041736 254 GCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSV 333 (500)
Q Consensus 254 ~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l 333 (500)
..+|.++..+.+ |..+|||.|++.. +|+.+.++.+|+.|+||+|+|+ .+-...+...+|++|+|++|+++ .+|..+
T Consensus 212 ~N~Ptsld~l~N-L~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~av 287 (1255)
T KOG0444|consen 212 DNIPTSLDDLHN-LRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAV 287 (1255)
T ss_pred hcCCCchhhhhh-hhhccccccCCCc-chHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHH
Confidence 235666666665 7777777777765 6677777777777777777776 44444455567777777777777 778888
Q ss_pred cCCCCCcEEEccCCcCccC-CCC----CccCCEEEcCCCCCCCCCCCCChhhhhhhcccccccCcc
Q 041736 334 CSLPNLRNFSFDYNFFTGE-SPV----CLDLQGFDDKRNCLRDKPRQRSTLQCRMFLSRLVYCNTL 394 (500)
Q Consensus 334 ~~l~~L~~L~Ls~N~l~g~-~p~----~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~c~~~ 394 (500)
+.++.|+.|.+.+|+++-+ +|. ..+|+.+...+|.+.-.+. ....|..+......|+-.
T Consensus 288 cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPE--glcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 288 CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPE--GLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCch--hhhhhHHHHHhcccccce
Confidence 8888888888888876522 232 3357777777887764432 223455555555555543
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=1.7e-22 Score=192.06 Aligned_cols=243 Identities=28% Similarity=0.443 Sum_probs=130.5
Q ss_pred cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhcc-CCCCCcEE
Q 041736 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVL-GLPKLKFL 199 (500)
Q Consensus 121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L 199 (500)
++++++||...|.+ +.+|..++.+.+|+.|+|.+|+|. .+| +|.++..|++|+++.|++. .+|.... ++.+|.+|
T Consensus 182 m~~L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLL-ETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHHhcccchhhh-hcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceee
Confidence 34455555555544 335666666666666666666665 444 4555555555555555554 3333332 55566666
Q ss_pred eccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCCCCcceEEecccccccc-----------------------
Q 041736 200 DLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGC----------------------- 255 (500)
Q Consensus 200 ~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~----------------------- 255 (500)
||..|+++ .+|+.++. .+|++||+++|.++ .+|..+++..|+.|.+.||.+...
T Consensus 258 DLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~d 335 (565)
T KOG0472|consen 258 DLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDD 335 (565)
T ss_pred eccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccC
Confidence 66666665 55555554 45666666666665 344445554555555555443100
Q ss_pred -----------------------------------------Cchhhhcccc--cCcEEEeccCCC---------------
Q 041736 256 -----------------------------------------LPLSFGNMSR--TLNEVILTNNGL--------------- 277 (500)
Q Consensus 256 -----------------------------------------~p~~l~~l~~--~L~~L~Ls~n~l--------------- 277 (500)
+|.+.....+ -...++++.|++
T Consensus 336 glS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT 415 (565)
T KOG0472|consen 336 GLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVT 415 (565)
T ss_pred CCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHH
Confidence 0100000000 011122222221
Q ss_pred --------CCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCC-----------------------C
Q 041736 278 --------HSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNML-----------------------S 326 (500)
Q Consensus 278 --------~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l-----------------------~ 326 (500)
.+.++..++.+++|..|+|++|-+. .+|.+++.+..|+.|++++|+| .
T Consensus 416 ~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~ 494 (565)
T KOG0472|consen 416 DLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIG 494 (565)
T ss_pred HHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccccc
Confidence 1224444555556666666665555 5555555555566666665554 3
Q ss_pred CCCchhhcCCCCCcEEEccCCcCccCCCC---CccCCEEEcCCCCCC
Q 041736 327 GTVPDSVCSLPNLRNFSFDYNFFTGESPV---CLDLQGFDDKRNCLR 370 (500)
Q Consensus 327 g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~---~~~L~~l~l~~N~l~ 370 (500)
..-++.+.++.+|+.|||.+|.+....|. +.++.+|++.+|.++
T Consensus 495 ~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 495 SVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 22233477888888999999988776664 557888899888887
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=5.9e-23 Score=195.23 Aligned_cols=243 Identities=23% Similarity=0.347 Sum_probs=197.7
Q ss_pred CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCc
Q 041736 118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLK 197 (500)
Q Consensus 118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 197 (500)
..++..++.|++.+|.+.. +|.+++.+..++.|+.++|+++ .+|.+++.+.+|+.|++++|++. .++..++.+..|+
T Consensus 64 l~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLE 140 (565)
T ss_pred hhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhh
Confidence 4456678888888888765 6777888888888888888887 78888888888888888888888 7777788888888
Q ss_pred EEeccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCC
Q 041736 198 FLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNG 276 (500)
Q Consensus 198 ~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~ 276 (500)
.|+..+|+++ .+|..++. .+|..+++.+|++....+..+..+.|+.|+...|.+. .+|..++.+.+ |..|+|..|+
T Consensus 141 dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~-L~~LyL~~Nk 217 (565)
T KOG0472|consen 141 DLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLES-LELLYLRRNK 217 (565)
T ss_pred hhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhh-hHHHHhhhcc
Confidence 8888888888 55555544 7788888888888866666666677888998888776 78999999987 9999999999
Q ss_pred CCCCCccccccCCCccEEeccCcccCCCChhhhh-CCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC
Q 041736 277 LHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIA-EMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV 355 (500)
Q Consensus 277 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~ 355 (500)
+.. +| +|.++..|++|.++.|.|. .+|.+.. ++.+|.+|||++|++. +.|+.++-+.+|.+||+|+|.+++..+.
T Consensus 218 i~~-lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~s 293 (565)
T KOG0472|consen 218 IRF-LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYS 293 (565)
T ss_pred ccc-CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcc
Confidence 886 55 7888999999999999998 7777765 8899999999999998 8889999999999999999999988776
Q ss_pred Ccc--CCEEEcCCCCCC
Q 041736 356 CLD--LQGFDDKRNCLR 370 (500)
Q Consensus 356 ~~~--L~~l~l~~N~l~ 370 (500)
..+ |..|.+.+|.+.
T Consensus 294 LgnlhL~~L~leGNPlr 310 (565)
T KOG0472|consen 294 LGNLHLKFLALEGNPLR 310 (565)
T ss_pred cccceeeehhhcCCchH
Confidence 544 455566666654
No 9
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=9.7e-20 Score=195.69 Aligned_cols=223 Identities=21% Similarity=0.369 Sum_probs=114.7
Q ss_pred cEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEecc
Q 041736 123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLR 202 (500)
Q Consensus 123 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 202 (500)
+.+.|++++++++. +|..+. .+|+.|+|++|.|+ .+|..+. .+|++|+|++|+|+ .+|..+. .+|+.|+|+
T Consensus 179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 34566666666554 343332 35666666666666 3444332 35666666666665 3444332 356666666
Q ss_pred CCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCc
Q 041736 203 YNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLP 282 (500)
Q Consensus 203 ~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p 282 (500)
+|++. .+|..+. .+|+.|++++|+++ .+|..+. .+|+.|++++|++++ +|..+. . +|++|++++|.++. +|
T Consensus 250 ~N~L~-~LP~~l~-s~L~~L~Ls~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp--~-sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 250 INRIT-ELPERLP-SALQSLDLFHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLP--S-GITHLNVQSNSLTA-LP 320 (754)
T ss_pred CCccC-cCChhHh-CCCCEEECcCCccC-ccccccC-CCCcEEECCCCcccc-Ccccch--h-hHHHHHhcCCcccc-CC
Confidence 66665 4554432 35666666666665 3444332 356666666666652 333332 1 25556666666554 33
Q ss_pred cccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCCc-cCCE
Q 041736 283 EEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL-DLQG 361 (500)
Q Consensus 283 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~~-~L~~ 361 (500)
..+ .++|+.|++++|.++ .+|..+. ++|+.|+|++|+|+ .+|..+. ++|++|+|++|+|+...+... .|+.
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~~sL~~ 392 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPENLPAALQI 392 (754)
T ss_pred ccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCCHhHHHHHHH
Confidence 322 235555666666555 2444332 45566666666555 3444332 355556666665553322211 3555
Q ss_pred EEcCCCCCCC
Q 041736 362 FDDKRNCLRD 371 (500)
Q Consensus 362 l~l~~N~l~~ 371 (500)
|++++|.+..
T Consensus 393 LdLs~N~L~~ 402 (754)
T PRK15370 393 MQASRNNLVR 402 (754)
T ss_pred HhhccCCccc
Confidence 5555555543
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=8e-21 Score=197.53 Aligned_cols=238 Identities=27% Similarity=0.440 Sum_probs=150.0
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL 201 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 201 (500)
.+++.+|+++|++++ +|+.++.+.+|+.|+..+|.|+ .+|..+..+++|++|++.+|.+. .+|..+.+++.|++|+|
T Consensus 241 ~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 567788888888766 5577788888888888888885 67777777888888888888887 67777778888899999
Q ss_pred cCCcCCCCCchhhcC---CCCCeEEccCCCccCCCCCccCC--CCcceEEeccccccccCchhhhcccccCcEEEeccCC
Q 041736 202 RYNEFEGKIPKALFD---KDLDAVFINNNRFSFELPDNIGN--SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNG 276 (500)
Q Consensus 202 s~N~l~g~~p~~~~~---~~L~~L~l~~n~l~~~~p~~~~~--~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~ 276 (500)
..|++. .+|+.++. ..|+.|+.+.|.+. ..|..-+. ..|+.|++.+|.+++..-..+-++.. |+.|+|++|.
T Consensus 318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h-LKVLhLsyNr 394 (1081)
T KOG0618|consen 318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH-LKVLHLSYNR 394 (1081)
T ss_pred hhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccc-eeeeeecccc
Confidence 888887 67765544 23444444444443 12211111 33566666666666655555555554 6666666666
Q ss_pred CCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCC-CC
Q 041736 277 LHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGES-PV 355 (500)
Q Consensus 277 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~-p~ 355 (500)
+.......+.++..|++|+||+|+++ .+|..+.++..|++|...+|++. .+| .+..++.|+.+|++.|+++... +.
T Consensus 395 L~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~ 471 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPE 471 (1081)
T ss_pred cccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhh
Confidence 65544445566666666666666666 55566666666666666666555 444 4555566666666666554321 11
Q ss_pred ---CccCCEEEcCCCC
Q 041736 356 ---CLDLQGFDDKRNC 368 (500)
Q Consensus 356 ---~~~L~~l~l~~N~ 368 (500)
..+|+.||+++|.
T Consensus 472 ~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 472 ALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hCCCcccceeeccCCc
Confidence 1345555555554
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.4e-18 Score=186.68 Aligned_cols=224 Identities=25% Similarity=0.403 Sum_probs=179.1
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL 201 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 201 (500)
.+++.|+|++|+|+. +|..+. .+|++|+|++|.|+ .+|..+. .+|+.|+|++|++. .+|..+. .+|+.|+|
T Consensus 199 ~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 468999999999985 565543 58999999999998 5676554 47999999999998 7777664 58999999
Q ss_pred cCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCC
Q 041736 202 RYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCL 281 (500)
Q Consensus 202 s~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~ 281 (500)
++|+++ .+|..+. .+|+.|++++|+++. +|..+. ..|+.|++++|.++. +|..+. . +|++|++++|.+++ +
T Consensus 270 s~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp-~sL~~L~Ls~N~Lt~-LP~~l~--~-sL~~L~Ls~N~Lt~-L 340 (754)
T PRK15370 270 FHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLP-SGITHLNVQSNSLTA-LPETLP--P-GLKTLEAGENALTS-L 340 (754)
T ss_pred cCCccC-ccccccC-CCCcEEECCCCcccc-Ccccch-hhHHHHHhcCCcccc-CCcccc--c-cceeccccCCcccc-C
Confidence 999998 6777654 589999999999984 555443 478999999999984 565443 3 49999999999987 6
Q ss_pred ccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCC---CCC--
Q 041736 282 PEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGES---PVC-- 356 (500)
Q Consensus 282 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~---p~~-- 356 (500)
|..+. ++|+.|+|++|+|+ .+|..+. .+|++|+|++|.|+ .+|..+. .+|+.|++++|+|++.. +.+
T Consensus 341 P~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~ 412 (754)
T PRK15370 341 PASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPHFRG 412 (754)
T ss_pred Chhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHHHhh
Confidence 66553 69999999999998 6777663 68999999999999 6776664 37999999999998532 122
Q ss_pred --ccCCEEEcCCCCCCC
Q 041736 357 --LDLQGFDDKRNCLRD 371 (500)
Q Consensus 357 --~~L~~l~l~~N~l~~ 371 (500)
..+..+++.+|.+..
T Consensus 413 ~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 413 EGPQPTRIIVEYNPFSE 429 (754)
T ss_pred cCCCccEEEeeCCCccH
Confidence 346789999998874
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.75 E-value=3.5e-17 Score=187.10 Aligned_cols=221 Identities=18% Similarity=0.214 Sum_probs=126.0
Q ss_pred CcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEE
Q 041736 120 SIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFL 199 (500)
Q Consensus 120 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 199 (500)
...+|+.|+|.+|.+.. ++..+..+.+|++|+|+++...+.+|. +..+++|++|+|++|.....+|..+.++.+|+.|
T Consensus 609 ~~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred CccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 34567777777777653 455566777777777777654445653 6677777777777776555777777777777777
Q ss_pred eccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccc--------------
Q 041736 200 DLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSR-------------- 265 (500)
Q Consensus 200 ~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~-------------- 265 (500)
++++|...+.+|..+...+|++|++++|.....+|... .+|++|++++|.+. .+|..+ .+.+
T Consensus 687 ~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~--~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 687 DMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIS--TNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKL 762 (1153)
T ss_pred eCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccccc--CCcCeeecCCCccc-cccccc-cccccccccccccchhhc
Confidence 77776544466665555677777777776555554332 35667777777654 344322 1221
Q ss_pred ----------------cCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCC
Q 041736 266 ----------------TLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTV 329 (500)
Q Consensus 266 ----------------~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i 329 (500)
+|++|+|++|...+.+|.+++++++|+.|+|++|..-+.+|..+ .+++|+.|+|++|.....+
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc
Confidence 24444444444444445455555555555555443322444333 3445555555544333333
Q ss_pred chhhcCCCCCcEEEccCCcCc
Q 041736 330 PDSVCSLPNLRNFSFDYNFFT 350 (500)
Q Consensus 330 p~~l~~l~~L~~L~Ls~N~l~ 350 (500)
|.. ..+|++|+|++|.++
T Consensus 842 p~~---~~nL~~L~Ls~n~i~ 859 (1153)
T PLN03210 842 PDI---STNISDLNLSRTGIE 859 (1153)
T ss_pred ccc---ccccCEeECCCCCCc
Confidence 321 234555555555554
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=1.9e-17 Score=177.18 Aligned_cols=216 Identities=25% Similarity=0.323 Sum_probs=107.3
Q ss_pred EEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCC
Q 041736 125 AGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYN 204 (500)
Q Consensus 125 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N 204 (500)
..|||++++++ .+|..+. .+|+.|++.+|+|+ .+|. .+++|++|+|++|+|+ .+|.. ..+|+.|+|++|
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSN 272 (788)
T ss_pred cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCC
Confidence 34566666665 3454443 25666666666665 3443 2345666666666665 33322 234455555555
Q ss_pred cCCCCCchhh------------------cCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhccccc
Q 041736 205 EFEGKIPKAL------------------FDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRT 266 (500)
Q Consensus 205 ~l~g~~p~~~------------------~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~ 266 (500)
.++ .++... ...+|++|++++|++++ +|... ..|+.|++++|.+++ +|. +..+
T Consensus 273 ~L~-~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~-Lp~lp--~~L~~L~Ls~N~L~~-LP~----lp~~ 343 (788)
T PRK15387 273 PLT-HLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPALP--SELCKLWAYNNQLTS-LPT----LPSG 343 (788)
T ss_pred chh-hhhhchhhcCEEECcCCccccccccccccceeECCCCcccc-CCCCc--ccccccccccCcccc-ccc----cccc
Confidence 444 233211 11345555555555543 22211 234455555555542 332 1113
Q ss_pred CcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccC
Q 041736 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDY 346 (500)
Q Consensus 267 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~ 346 (500)
|++|+|++|+|++ +|.. ..+|+.|++++|+|+ .+|.. ..+|+.|+|++|.|+ .+|.. ..+|+.|++++
T Consensus 344 Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~ 411 (788)
T PRK15387 344 LQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSG 411 (788)
T ss_pred cceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccC
Confidence 6666666666654 3322 234555666666665 34432 235666666666666 34432 24566667777
Q ss_pred CcCccCCCCCccCCEEEcCCCCCCCC
Q 041736 347 NFFTGESPVCLDLQGFDDKRNCLRDK 372 (500)
Q Consensus 347 N~l~g~~p~~~~L~~l~l~~N~l~~~ 372 (500)
|.|++.......|+.|++++|.++..
T Consensus 412 N~LssIP~l~~~L~~L~Ls~NqLt~L 437 (788)
T PRK15387 412 NRLTSLPMLPSGLLSLSVYRNQLTRL 437 (788)
T ss_pred CcCCCCCcchhhhhhhhhccCccccc
Confidence 76665322223466666677766643
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=5.3e-17 Score=185.68 Aligned_cols=239 Identities=21% Similarity=0.258 Sum_probs=185.8
Q ss_pred CCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcE
Q 041736 119 HSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKF 198 (500)
Q Consensus 119 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 198 (500)
..+.+|+.|+|+++...+.+|. ++.+++|++|+|++|.....+|..+.++.+|++|+|++|.....+|..+ ++++|++
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~ 708 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYR 708 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCE
Confidence 3467899999998876666764 8889999999999987767899999999999999999976555777655 7889999
Q ss_pred EeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccC-------------------------------CCCcceEEe
Q 041736 199 LDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIG-------------------------------NSPVSVLVL 247 (500)
Q Consensus 199 L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~-------------------------------~~~L~~L~l 247 (500)
|+|++|...+.+|.. ..+|++|++++|.+. .+|..+. ..+|+.|++
T Consensus 709 L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~L 785 (1153)
T PLN03210 709 LNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL 785 (1153)
T ss_pred EeCCCCCCccccccc--cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeC
Confidence 999988765566542 357888888888765 3443221 136788899
Q ss_pred ccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCC
Q 041736 248 ANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSG 327 (500)
Q Consensus 248 ~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g 327 (500)
++|...+.+|..++++.+ |++|++++|...+.+|..+ ++++|+.|+|++|.....+|.. ..+|+.|+|++|.++
T Consensus 786 s~n~~l~~lP~si~~L~~-L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~- 859 (1153)
T PLN03210 786 SDIPSLVELPSSIQNLHK-LEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE- 859 (1153)
T ss_pred CCCCCccccChhhhCCCC-CCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-
Confidence 999888889999999997 9999999987666677766 7899999999998665555543 368999999999998
Q ss_pred CCchhhcCCCCCcEEEccC-CcCccCCC---CCccCCEEEcCCCC
Q 041736 328 TVPDSVCSLPNLRNFSFDY-NFFTGESP---VCLDLQGFDDKRNC 368 (500)
Q Consensus 328 ~ip~~l~~l~~L~~L~Ls~-N~l~g~~p---~~~~L~~l~l~~N~ 368 (500)
.+|.++..+++|+.|++++ |++.+... ....|+.++++++.
T Consensus 860 ~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 860 EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 7899999999999999998 45554322 23356677776553
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.73 E-value=2.8e-17 Score=175.82 Aligned_cols=221 Identities=24% Similarity=0.298 Sum_probs=161.0
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccC-----------------CCCCCEEeCcCCcCCC
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNK-----------------LKLLFELDLSNNRFAG 184 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-----------------l~~L~~L~Ls~n~l~~ 184 (500)
.+++.|++.+|+++. +|. .+++|++|+|++|+|+ .+|..+.+ ..+|+.|+|++|+++
T Consensus 222 ~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt- 295 (788)
T PRK15387 222 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT- 295 (788)
T ss_pred cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-
Confidence 357888888888875 443 2467888888888887 34432211 123455566666655
Q ss_pred cCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhccc
Q 041736 185 KFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMS 264 (500)
Q Consensus 185 ~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~ 264 (500)
.+|. .+++|++|+|++|++++ +|.. ..+|+.|++++|++++ +|... .+|++|+|++|++++ +|...
T Consensus 296 ~LP~---~p~~L~~LdLS~N~L~~-Lp~l--p~~L~~L~Ls~N~L~~-LP~lp--~~Lq~LdLS~N~Ls~-LP~lp---- 361 (788)
T PRK15387 296 SLPV---LPPGLQELSVSDNQLAS-LPAL--PSELCKLWAYNNQLTS-LPTLP--SGLQELSVSDNQLAS-LPTLP---- 361 (788)
T ss_pred cccc---cccccceeECCCCcccc-CCCC--cccccccccccCcccc-ccccc--cccceEecCCCccCC-CCCCC----
Confidence 3343 23689999999999984 5542 2578999999999984 56432 479999999999994 55432
Q ss_pred ccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEc
Q 041736 265 RTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSF 344 (500)
Q Consensus 265 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~L 344 (500)
.+|+.|++++|.|++ +|.. ..+|+.|+|++|+|+ .+|.. ..+|+.|++++|.|+ .+|... .+|+.|++
T Consensus 362 ~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~L 429 (788)
T PRK15387 362 SELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSV 429 (788)
T ss_pred cccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhh
Confidence 248899999999997 6653 357999999999999 46653 368999999999998 477543 46889999
Q ss_pred cCCcCccCCCC----CccCCEEEcCCCCCCCCCCC
Q 041736 345 DYNFFTGESPV----CLDLQGFDDKRNCLRDKPRQ 375 (500)
Q Consensus 345 s~N~l~g~~p~----~~~L~~l~l~~N~l~~~~~~ 375 (500)
++|+|+ .+|. +..+..|++++|.+++...+
T Consensus 430 s~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 430 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 999998 4554 34689999999999986543
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=1.5e-18 Score=171.90 Aligned_cols=229 Identities=22% Similarity=0.227 Sum_probs=118.5
Q ss_pred CcEEEEECCCCCCccc----CchhhcCCCCCCEEEcCCCCCCc------cCCccccCCCCCCEEeCcCCcCCCcCchhcc
Q 041736 122 RTVAGIDLNHGDIASY----LPEELGLLADIALFHVNTNRFCG------TLPRSFNKLKLLFELDLSNNRFAGKFPYVVL 191 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 191 (500)
.+++.|+++++.++.. +...+...++|++|+++++.+.+ .++..+..+.+|++|+|++|.+.+..+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 4466777777766332 34445556667777777766652 2234455566777777777776654444444
Q ss_pred CCCC---CcEEeccCCcCCCCCchh----hc-C-CCCCeEEccCCCccCCCCC----cc-CCCCcceEEecccccccc--
Q 041736 192 GLPK---LKFLDLRYNEFEGKIPKA----LF-D-KDLDAVFINNNRFSFELPD----NI-GNSPVSVLVLANNKFHGC-- 255 (500)
Q Consensus 192 ~l~~---L~~L~Ls~N~l~g~~p~~----~~-~-~~L~~L~l~~n~l~~~~p~----~~-~~~~L~~L~l~~n~l~~~-- 255 (500)
.+.+ |++|++++|++++..... +. . .+|++|++++|.+++.... .+ ...+|++|++++|.+++.
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 4443 777777777665311111 11 1 4566666666666532111 11 113466666666665532
Q ss_pred --CchhhhcccccCcEEEeccCCCCCC----CccccccCCCccEEeccCcccCCCChhhhhC-----CCCCcEEEcccCC
Q 041736 256 --LPLSFGNMSRTLNEVILTNNGLHSC----LPEEIGLLKNVTVFDVSYNKLMGELPDTIAE-----MTSLQQLNVAHNM 324 (500)
Q Consensus 256 --~p~~l~~l~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~L~~N~ 324 (500)
+...+..+.. |++|++++|.+++. +...+..+++|++|++++|.+++.....+.. ...|++|++++|.
T Consensus 183 ~~l~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 183 RALAEGLKANCN-LEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHhCCC-CCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 1222333333 66666666665532 2233445555666666666655422222211 2456666666666
Q ss_pred CCC----CCchhhcCCCCCcEEEccCCcCcc
Q 041736 325 LSG----TVPDSVCSLPNLRNFSFDYNFFTG 351 (500)
Q Consensus 325 l~g----~ip~~l~~l~~L~~L~Ls~N~l~g 351 (500)
+++ .+...+..+++|+++++++|.++.
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 541 222334444556666666666653
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=1.5e-18 Score=171.97 Aligned_cols=246 Identities=24% Similarity=0.225 Sum_probs=161.4
Q ss_pred EEECCCCCCc-ccCchhhcCCCCCCEEEcCCCCCCcc----CCccccCCCCCCEEeCcCCcCCC------cCchhccCCC
Q 041736 126 GIDLNHGDIA-SYLPEELGLLADIALFHVNTNRFCGT----LPRSFNKLKLLFELDLSNNRFAG------KFPYVVLGLP 194 (500)
Q Consensus 126 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~------~~p~~l~~l~ 194 (500)
.|+|+++++. ......+..+.+|++|+++++.++.. ++..+...++|++|+++++.+.+ .++..+..+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4677777776 33445566777788888888887532 44556667778888888887762 2344566778
Q ss_pred CCcEEeccCCcCCCCCchhhcC-C---CCCeEEccCCCccCCC----CCccC-C-CCcceEEecccccccc----Cchhh
Q 041736 195 KLKFLDLRYNEFEGKIPKALFD-K---DLDAVFINNNRFSFEL----PDNIG-N-SPVSVLVLANNKFHGC----LPLSF 260 (500)
Q Consensus 195 ~L~~L~Ls~N~l~g~~p~~~~~-~---~L~~L~l~~n~l~~~~----p~~~~-~-~~L~~L~l~~n~l~~~----~p~~l 260 (500)
+|++|++++|.+.+..+..+.. . +|++|++++|++++.. ...+. . .+|+.|++++|.+++. +...+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 8888888888887544444332 2 3888888888876321 11121 2 4678888888888743 23344
Q ss_pred hcccccCcEEEeccCCCCCC----CccccccCCCccEEeccCcccCCC----ChhhhhCCCCCcEEEcccCCCCCCCchh
Q 041736 261 GNMSRTLNEVILTNNGLHSC----LPEEIGLLKNVTVFDVSYNKLMGE----LPDTIAEMTSLQQLNVAHNMLSGTVPDS 332 (500)
Q Consensus 261 ~~l~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~ip~~ 332 (500)
..+.+ |++|++++|.+++. +...+..+++|++|+|++|.+++. +...+..+++|++|++++|.+++.....
T Consensus 162 ~~~~~-L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 162 RANRD-LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HhCCC-cCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 45554 88888888888742 233445566888888888887643 2334556778888888888887522222
Q ss_pred hc-----CCCCCcEEEccCCcCcc--------CCCCCccCCEEEcCCCCCCCC
Q 041736 333 VC-----SLPNLRNFSFDYNFFTG--------ESPVCLDLQGFDDKRNCLRDK 372 (500)
Q Consensus 333 l~-----~l~~L~~L~Ls~N~l~g--------~~p~~~~L~~l~l~~N~l~~~ 372 (500)
+. ....|++|++++|.++. .++....|+.+++++|.+...
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 21 23678888888888862 233345688888888888754
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=4.4e-19 Score=150.65 Aligned_cols=164 Identities=27% Similarity=0.529 Sum_probs=117.4
Q ss_pred CcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEE
Q 041736 120 SIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFL 199 (500)
Q Consensus 120 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 199 (500)
.+.++++|.|++|.++. +|..++.+.+|+.|++.+|++. .+|.+++.+++|+.|+++.|++. .+|..|+.++.|++|
T Consensus 31 ~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 34677888888888765 5666788888888888888887 77778888888888888888887 778888888888888
Q ss_pred eccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCC
Q 041736 200 DLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS 279 (500)
Q Consensus 200 ~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~ 279 (500)
||.+|++... .+|..|..++. |+.|+|++|.+.-
T Consensus 108 dltynnl~e~---------------------------------------------~lpgnff~m~t-lralyl~dndfe~ 141 (264)
T KOG0617|consen 108 DLTYNNLNEN---------------------------------------------SLPGNFFYMTT-LRALYLGDNDFEI 141 (264)
T ss_pred hccccccccc---------------------------------------------cCCcchhHHHH-HHHHHhcCCCccc
Confidence 8888876521 23334444554 6666666666654
Q ss_pred CCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcC
Q 041736 280 CLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCS 335 (500)
Q Consensus 280 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~ 335 (500)
+|..++++++|+.|.+..|.+- .+|.+++.+..|++|++++|+++ .+|..+++
T Consensus 142 -lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 142 -LPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred -CChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 5666677777777777777666 66777777777777777777776 55555544
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.68 E-value=7.6e-19 Score=167.20 Aligned_cols=249 Identities=21% Similarity=0.221 Sum_probs=180.6
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcC-CcCCCcCchhccCCCCCcEEe
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSN-NRFAGKFPYVVLGLPKLKFLD 200 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~ 200 (500)
...+.|+|..|+|+.+-+..|+.+.+|+.|||++|.|+.+-|++|.++.+|..|-+.+ |+|+..--..|.+|.+|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3568999999999998888999999999999999999999999999999987776666 999966667889999999999
Q ss_pred ccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccC-CCCcceEEecccccc------------ccCchhhhcccc-
Q 041736 201 LRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIG-NSPVSVLVLANNKFH------------GCLPLSFGNMSR- 265 (500)
Q Consensus 201 Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~~n~l~------------~~~p~~l~~l~~- 265 (500)
+.-|++.-.....+.. .+|..|.+.+|.+...--..+. ...++.+.+..|.+. ...+.+++....
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 9999888333333333 6788888888877632221222 244555555555411 011111111110
Q ss_pred --------------------cCcEE---EeccCCCCCCCc-cccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcc
Q 041736 266 --------------------TLNEV---ILTNNGLHSCLP-EEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVA 321 (500)
Q Consensus 266 --------------------~L~~L---~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 321 (500)
+++.+ -.+.+...+.-| ..|+.|++|+.|+|++|+|++.-..+|.++.++++|.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 11111 123333444333 357889999999999999998888999999999999999
Q ss_pred cCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCCc----cCCEEEcCCCCCC
Q 041736 322 HNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL----DLQGFDDKRNCLR 370 (500)
Q Consensus 322 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~~----~L~~l~l~~N~l~ 370 (500)
.|+|...--..|.++..|+.|+|.+|+|+...|..+ .|.+|++-.|.+.
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 999985555678899999999999999987766544 5778887777443
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=7.8e-19 Score=149.18 Aligned_cols=162 Identities=28% Similarity=0.441 Sum_probs=135.5
Q ss_pred cCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeE
Q 041736 143 GLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAV 222 (500)
Q Consensus 143 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L 222 (500)
-++++++.|.|++|+++ .+|..++.+.+|+.|++++|++. .+|..+..+++|+.|+++-|++.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~--------------- 92 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN--------------- 92 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh---------------
Confidence 35566777777777777 56666777777777777777777 66777777777777777666654
Q ss_pred EccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCC-CCccccccCCCccEEeccCccc
Q 041736 223 FINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS-CLPEEIGLLKNVTVFDVSYNKL 301 (500)
Q Consensus 223 ~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l 301 (500)
.+|..|+.+.. |+.|||..|++.. .+|..|..++.|+.|.|++|.+
T Consensus 93 --------------------------------~lprgfgs~p~-levldltynnl~e~~lpgnff~m~tlralyl~dndf 139 (264)
T KOG0617|consen 93 --------------------------------ILPRGFGSFPA-LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF 139 (264)
T ss_pred --------------------------------cCccccCCCch-hhhhhccccccccccCCcchhHHHHHHHHHhcCCCc
Confidence 56778888887 9999999999975 5788899999999999999999
Q ss_pred CCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCC
Q 041736 302 MGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC 356 (500)
Q Consensus 302 ~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~ 356 (500)
. .+|..++++++|+.|.+++|.+. .+|..++.++.|++|.+.+|+++-..|..
T Consensus 140 e-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 140 E-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred c-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhh
Confidence 9 89999999999999999999998 88999999999999999999999877763
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.64 E-value=9.8e-18 Score=174.82 Aligned_cols=220 Identities=21% Similarity=0.341 Sum_probs=175.7
Q ss_pred cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhc-cCCC-CCcE
Q 041736 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVV-LGLP-KLKF 198 (500)
Q Consensus 121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~-~L~~ 198 (500)
+.+|+.|+..+|.+ ..++..+....+|+.|.+..|.+. .+|..+.+++.|++|||..|+|. .+|..+ ..+. +|..
T Consensus 263 ~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ 339 (1081)
T KOG0618|consen 263 CANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNT 339 (1081)
T ss_pred cccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHH
Confidence 46899999999999 458888999999999999999998 78888888999999999999998 555533 3332 3777
Q ss_pred EeccCCcCCCCCchhhc--CCCCCeEEccCCCccCCCCCcc-CCCCcceEEeccccccccCchhhhcccccCcEEEeccC
Q 041736 199 LDLRYNEFEGKIPKALF--DKDLDAVFINNNRFSFELPDNI-GNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNN 275 (500)
Q Consensus 199 L~Ls~N~l~g~~p~~~~--~~~L~~L~l~~n~l~~~~p~~~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n 275 (500)
|+.+.|++. ..|..-. ...|+.|++.+|.++......+ +..+|++|+|++|++...-...+.++.. |++|+||+|
T Consensus 340 ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~-LeeL~LSGN 417 (1081)
T KOG0618|consen 340 LNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEE-LEELNLSGN 417 (1081)
T ss_pred Hhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHH-hHHHhcccc
Confidence 888888876 4552211 1678899999999987654444 4488999999999998555567788886 999999999
Q ss_pred CCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCc
Q 041736 276 GLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNF 348 (500)
Q Consensus 276 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 348 (500)
+++. +|.++.++..|++|...+|++. ..| .+..++.|+.+|++.|+|+...-..-...++|++|||++|.
T Consensus 418 kL~~-Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 418 KLTT-LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhh-hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 9987 7888999999999999999998 777 78889999999999999875332222233789999999986
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.62 E-value=4.7e-15 Score=158.76 Aligned_cols=154 Identities=23% Similarity=0.377 Sum_probs=126.0
Q ss_pred hhHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC----CcCceecCCCCCCCCcCcEEEEECCCCCCcccCchhhcCCCCC
Q 041736 73 RIRSAYIALQAWKKAIISDPWNLTSNWVGCYVC----NYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADI 148 (500)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~c----~~~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L 148 (500)
+...+..||..+|..+. ++. ..+|.+..|| .|.||.|..... .....++.|+|++|.+.|.+|..++.+.+|
T Consensus 369 t~~~~~~aL~~~k~~~~-~~~--~~~W~g~~C~p~~~~w~Gv~C~~~~~-~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L 444 (623)
T PLN03150 369 TLLEEVSALQTLKSSLG-LPL--RFGWNGDPCVPQQHPWSGADCQFDST-KGKWFIDGLGLDNQGLRGFIPNDISKLRHL 444 (623)
T ss_pred cCchHHHHHHHHHHhcC-Ccc--cCCCCCCCCCCcccccccceeeccCC-CCceEEEEEECCCCCccccCCHHHhCCCCC
Confidence 45567889999998763 222 2378765442 799999963211 112369999999999999999999999999
Q ss_pred CEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcC--CCCCeEEccC
Q 041736 149 ALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLDAVFINN 226 (500)
Q Consensus 149 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~--~~L~~L~l~~ 226 (500)
+.|+|++|.|+|.+|..++.+++|++|+|++|+++|.+|..+.++++|++|+|++|+++|.+|..+.. .++..+++.+
T Consensus 445 ~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 445 QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999987654 3445566666
Q ss_pred CCcc
Q 041736 227 NRFS 230 (500)
Q Consensus 227 n~l~ 230 (500)
|...
T Consensus 525 N~~l 528 (623)
T PLN03150 525 NAGL 528 (623)
T ss_pred Cccc
Confidence 5443
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.62 E-value=2.5e-17 Score=156.98 Aligned_cols=244 Identities=20% Similarity=0.248 Sum_probs=178.5
Q ss_pred CCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccC-CcCCCCCchhhcC--CCCCeEE
Q 041736 147 DIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRY-NEFEGKIPKALFD--KDLDAVF 223 (500)
Q Consensus 147 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~g~~p~~~~~--~~L~~L~ 223 (500)
.-..|+|..|.|+..-+.+|..+.+|+.|||++|+|+.+-|+.|.++.+|..|-+.+ |+|+ .++...|. ..|+.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence 567899999999977778999999999999999999988999999999998887776 9998 88888776 7888899
Q ss_pred ccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCC------------CCccccccCCC
Q 041736 224 INNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS------------CLPEEIGLLKN 290 (500)
Q Consensus 224 l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~------------~~p~~~~~l~~ 290 (500)
+.-|++.-...+.+.. .++..|.+..|.+...--..|..+.. ++.+.+..|.+-. ..+.+++....
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~-i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAA-IKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhc-cchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 9888887555544433 56788888999887433347778876 8999888877321 11222232222
Q ss_pred ccEEec-------------------------cCcccCCCCh-hhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEc
Q 041736 291 VTVFDV-------------------------SYNKLMGELP-DTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSF 344 (500)
Q Consensus 291 L~~L~L-------------------------s~n~l~~~~p-~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~L 344 (500)
..-..+ +.+...+.-| ..|.++++|++|+|++|+|++.-..+|.....+++|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 111111 1122222333 34788999999999999999888889999999999999
Q ss_pred cCCcCccC----CCCCccCCEEEcCCCCCCCCCCC-C---ChhhhhhhcccccccC
Q 041736 345 DYNFFTGE----SPVCLDLQGFDDKRNCLRDKPRQ-R---STLQCRMFLSRLVYCN 392 (500)
Q Consensus 345 s~N~l~g~----~p~~~~L~~l~l~~N~l~~~~~~-~---~~~~~~~~~~~~~~c~ 392 (500)
..|+|... +-....|+.|++++|+|+...+- + .......+.+|++.|+
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 99998633 33344799999999999765331 1 1112345567777775
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.41 E-value=7e-15 Score=146.36 Aligned_cols=194 Identities=29% Similarity=0.483 Sum_probs=146.2
Q ss_pred CCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEc
Q 041736 145 LADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFI 224 (500)
Q Consensus 145 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l 224 (500)
+..-...||+.|++. ++|..+..+..|+.|.|++|.+. .+|..+.++..|++|||+.|+++ .+|..++.--|+.|-+
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIV 150 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEE
Confidence 444556778888887 77777777778888888888887 77888888888888888888887 7777777777888888
Q ss_pred cCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCC
Q 041736 225 NNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMG 303 (500)
Q Consensus 225 ~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 303 (500)
++|+++ .+|..++. ..|..|+.+.|.+. .+|..++.+.+ |+.|.+..|++.. +|+.+..| .|..||+++|+++
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~s-lr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis- 224 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTS-LRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKIS- 224 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHH-HHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCcee-
Confidence 888777 56666664 56778888888887 67888888886 8888888888877 56666644 6788888888888
Q ss_pred CChhhhhCCCCCcEEEcccCCCCCCCchhhcC---CCCCcEEEccCCc
Q 041736 304 ELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCS---LPNLRNFSFDYNF 348 (500)
Q Consensus 304 ~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~---l~~L~~L~Ls~N~ 348 (500)
.||..|.+|..|++|-|.+|.+. .-|..++. ..-.++|+..-.+
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 78888888888888888888887 44444432 2233556655553
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.35 E-value=3.7e-14 Score=141.29 Aligned_cols=192 Identities=21% Similarity=0.268 Sum_probs=160.8
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL 201 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 201 (500)
.-.+..||+.|.+.. +|..+..+..|+.+.|+.|.|. .||..+.++..|.+|||+.|+++ .+|..+..| -|+.|-+
T Consensus 75 tdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIV 150 (722)
T ss_pred cchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEE
Confidence 345678999999865 7888889999999999999998 89999999999999999999999 788888776 4999999
Q ss_pred cCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCC
Q 041736 202 RYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC 280 (500)
Q Consensus 202 s~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~ 280 (500)
++|+++ .+|..+.. ..|..|+.+.|++....+...+..+|+.|.+..|++. .+|.++..+. |..||+++|++..
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp--Li~lDfScNkis~- 225 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP--LIRLDFSCNKISY- 225 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc--eeeeecccCceee-
Confidence 999998 78877765 7889999999999844444444578999999999998 6888888775 9999999999987
Q ss_pred CccccccCCCccEEeccCcccCCCChhhhhCCCC---CcEEEcccC
Q 041736 281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTS---LQQLNVAHN 323 (500)
Q Consensus 281 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~---L~~L~L~~N 323 (500)
+|-.|.+|++|++|-|.+|.+. .-|..++..-+ .++|+.+-+
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 8999999999999999999998 66666654333 356666655
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.34 E-value=1.7e-12 Score=132.66 Aligned_cols=195 Identities=34% Similarity=0.534 Sum_probs=120.9
Q ss_pred EEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCC-CCCEEeCcCCcCCCcCchhccCCCCCcEEeccCC
Q 041736 126 GIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLK-LLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYN 204 (500)
Q Consensus 126 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N 204 (500)
.+++..+.+...+ ..+..++.++.|++.+|.++ .++.....+. +|++|++++|++. .++..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4677777664433 23455678888888888887 5666666664 8888888888887 56566778888888888888
Q ss_pred cCCCCCchhh-cCCCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCc
Q 041736 205 EFEGKIPKAL-FDKDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLP 282 (500)
Q Consensus 205 ~l~g~~p~~~-~~~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p 282 (500)
+++ .++... ...+|+.|++++|++. .++..++. ..|++|.+++|.+. .++..+.++.. +..|.+.+|++.. ++
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~-l~~l~l~~n~~~~-~~ 248 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKN-LSGLELSNNKLED-LP 248 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccc-ccccccCCceeee-cc
Confidence 887 666555 4467777777777776 44444322 33566666666432 23344555554 5555555555544 23
Q ss_pred cccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCc
Q 041736 283 EEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVP 330 (500)
Q Consensus 283 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip 330 (500)
..++.+.+|++|++++|.++ .++. ++.+.+|+.|++++|.+...++
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred chhccccccceecccccccc-cccc-ccccCccCEEeccCccccccch
Confidence 44555555666666666655 3322 5555556666666655554433
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.25 E-value=1.4e-11 Score=132.13 Aligned_cols=89 Identities=28% Similarity=0.584 Sum_probs=51.6
Q ss_pred CcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccC
Q 041736 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDY 346 (500)
Q Consensus 267 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~ 346 (500)
++.|+|++|.+.|.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|+.+.++++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CcCccCCCC
Q 041736 347 NFFTGESPV 355 (500)
Q Consensus 347 N~l~g~~p~ 355 (500)
|+|+|.+|.
T Consensus 500 N~l~g~iP~ 508 (623)
T PLN03150 500 NSLSGRVPA 508 (623)
T ss_pred CcccccCCh
Confidence 555555554
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.22 E-value=1.3e-11 Score=126.03 Aligned_cols=182 Identities=30% Similarity=0.442 Sum_probs=148.4
Q ss_pred cCcEEEEECCCCCCcccCchhhcCCC-CCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEE
Q 041736 121 IRTVAGIDLNHGDIASYLPEELGLLA-DIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFL 199 (500)
Q Consensus 121 ~~~l~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 199 (500)
+..++.|++.+|.++. ++.....+. +|+.|++++|.+. .++..+..+++|+.|++++|+++ .++.....+.+|+.|
T Consensus 115 ~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 4579999999999976 555667774 9999999999998 66677899999999999999999 677666688999999
Q ss_pred eccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCC
Q 041736 200 DLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLH 278 (500)
Q Consensus 200 ~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~ 278 (500)
++++|+++ .++..... ..|++|.+++|.+...+...-....+..+.+.+|.+.. ++..++.+.. +++|++++|.++
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~-l~~L~~s~n~i~ 268 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSN-LETLDLSNNQIS 268 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-ccchhccccc-cceecccccccc
Confidence 99999999 88877644 56999999999644233323333667888888888873 4677888886 999999999999
Q ss_pred CCCccccccCCCccEEeccCcccCCCChhhhh
Q 041736 279 SCLPEEIGLLKNVTVFDVSYNKLMGELPDTIA 310 (500)
Q Consensus 279 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 310 (500)
.... ++.+.+|+.||+++|.++...+....
T Consensus 269 ~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 269 SISS--LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred cccc--ccccCccCEEeccCccccccchhhhc
Confidence 8533 89999999999999999976665443
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.17 E-value=5.6e-12 Score=119.22 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=63.5
Q ss_pred cCcEEEEECCCCCCccc----CchhhcCCCCCCEEEcCCCC---CCccCCcc-------ccCCCCCCEEeCcCCcCCCcC
Q 041736 121 IRTVAGIDLNHGDIASY----LPEELGLLADIALFHVNTNR---FCGTLPRS-------FNKLKLLFELDLSNNRFAGKF 186 (500)
Q Consensus 121 ~~~l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~---l~~~~p~~-------l~~l~~L~~L~Ls~n~l~~~~ 186 (500)
+..++.|+|++|.|... +...+.+.++|+..++++-. +...+|.. +....+|++||||+|.|.-..
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 45789999999998443 45567788899999988642 22234433 345668999999999987443
Q ss_pred c----hhccCCCCCcEEeccCCcCC
Q 041736 187 P----YVVLGLPKLKFLDLRYNEFE 207 (500)
Q Consensus 187 p----~~l~~l~~L~~L~Ls~N~l~ 207 (500)
. ..+..+..|++|.|.+|.+.
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCC
Confidence 3 34566889999999999875
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=4.6e-12 Score=122.95 Aligned_cols=207 Identities=21% Similarity=0.234 Sum_probs=115.1
Q ss_pred CCCCCCEEEcCCCCCCccCC--ccccCCCCCCEEeCcCCcCCCc--CchhccCCCCCcEEeccCCcCCCCCchhhc--CC
Q 041736 144 LLADIALFHVNTNRFCGTLP--RSFNKLKLLFELDLSNNRFAGK--FPYVVLGLPKLKFLDLRYNEFEGKIPKALF--DK 217 (500)
Q Consensus 144 ~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~--~~ 217 (500)
++.+|+.+.|.+..+. ... .....|++++.|||++|-|... +.....+|++|+.|+|+.|++.--+....- ..
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 4555666666665553 111 2344566666666666655531 223444566666666666665422221111 15
Q ss_pred CCCeEEccCCCccCCCCCc--cCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCC-ccccccCCCccEE
Q 041736 218 DLDAVFINNNRFSFELPDN--IGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCL-PEEIGLLKNVTVF 294 (500)
Q Consensus 218 ~L~~L~l~~n~l~~~~p~~--~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L 294 (500)
.|+.|.|+.|.++-.--.. ....+|+.|+|.+|.....--.....+.. |++|||++|++-... -..++.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~-L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT-LQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH-HhhccccCCcccccccccccccccchhhh
Confidence 5666666666665211111 12245667777766422222223333443 888888888876521 1456778888888
Q ss_pred eccCcccCCC-Chhh-----hhCCCCCcEEEcccCCCCCCC-chhhcCCCCCcEEEccCCcCccC
Q 041736 295 DVSYNKLMGE-LPDT-----IAEMTSLQQLNVAHNMLSGTV-PDSVCSLPNLRNFSFDYNFFTGE 352 (500)
Q Consensus 295 ~Ls~n~l~~~-~p~~-----l~~l~~L~~L~L~~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~ 352 (500)
+++.+.+... +|.. ...+.+|++|++..|++...- -..+..+.+|+.|.+..|+|+-+
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 8888877631 1211 245678888888888885311 12345566777777778877644
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=5.1e-11 Score=110.41 Aligned_cols=128 Identities=19% Similarity=0.196 Sum_probs=83.3
Q ss_pred CcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEc
Q 041736 241 PVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNV 320 (500)
Q Consensus 241 ~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 320 (500)
.|+.+||++|.|+ .+.++..-+++ ++.|+++.|.+... ..+..+.+|+.|||++|.++ .+-.|-.++-++++|.|
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pk-ir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPK-LRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccc-eeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 4667777777776 45566666665 77777777777653 23666777777777777777 44455566777777777
Q ss_pred ccCCCCCCCchhhcCCCCCcEEEccCCcCcc-----CCCCCccCCEEEcCCCCCCCCCCC
Q 041736 321 AHNMLSGTVPDSVCSLPNLRNFSFDYNFFTG-----ESPVCLDLQGFDDKRNCLRDKPRQ 375 (500)
Q Consensus 321 ~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-----~~p~~~~L~~l~l~~N~l~~~~~~ 375 (500)
++|.|.. + ..+..+-+|..||+++|+|.. .|-...+|+.+.+.+|.+.+.+..
T Consensus 360 a~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 360 AQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred hhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 7777652 1 345556667777777777642 122344677777777777766543
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.05 E-value=4.3e-11 Score=113.33 Aligned_cols=230 Identities=25% Similarity=0.341 Sum_probs=165.2
Q ss_pred hhhcCCCCCCEEEcCCCCCCcc----CCccccCCCCCCEEeCcCC---cCCCcCch-------hccCCCCCcEEeccCCc
Q 041736 140 EELGLLADIALFHVNTNRFCGT----LPRSFNKLKLLFELDLSNN---RFAGKFPY-------VVLGLPKLKFLDLRYNE 205 (500)
Q Consensus 140 ~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n---~l~~~~p~-------~l~~l~~L~~L~Ls~N~ 205 (500)
..+..+..++.|+|++|.|... +...+.+.++|+..++++- ++...+|. .+..++.|++|+||.|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 4466788999999999999633 4556777889999999863 22223443 44566799999999999
Q ss_pred CCCCCchhhc-----CCCCCeEEccCCCccCCCCCc-------------cC-CCCcceEEeccccccccC----chhhhc
Q 041736 206 FEGKIPKALF-----DKDLDAVFINNNRFSFELPDN-------------IG-NSPVSVLVLANNKFHGCL----PLSFGN 262 (500)
Q Consensus 206 l~g~~p~~~~-----~~~L~~L~l~~n~l~~~~p~~-------------~~-~~~L~~L~l~~n~l~~~~----p~~l~~ 262 (500)
|.-.....+. ..+|++|+|.+|.+.-.--.. .+ ..+|+++..+.|++...- -..|..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 8755444332 279999999999886211111 11 156999999999987532 334455
Q ss_pred ccccCcEEEeccCCCCCC----CccccccCCCccEEeccCcccCCC----ChhhhhCCCCCcEEEcccCCCCCCCchh--
Q 041736 263 MSRTLNEVILTNNGLHSC----LPEEIGLLKNVTVFDVSYNKLMGE----LPDTIAEMTSLQQLNVAHNMLSGTVPDS-- 332 (500)
Q Consensus 263 l~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~ip~~-- 332 (500)
... |+.+.++.|.|... +-..+..+++|++|||..|-|+.. +...+..+++|+.|++++|.+...-...
T Consensus 184 ~~~-leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 184 HPT-LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred ccc-cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 554 99999999998632 345678899999999999999743 3345667889999999999987533222
Q ss_pred --h-cCCCCCcEEEccCCcCccC--------CCCCccCCEEEcCCCCCC
Q 041736 333 --V-CSLPNLRNFSFDYNFFTGE--------SPVCLDLQGFDDKRNCLR 370 (500)
Q Consensus 333 --l-~~l~~L~~L~Ls~N~l~g~--------~p~~~~L~~l~l~~N~l~ 370 (500)
+ ...++|++|++.+|.++-. +-....|..|++++|.+.
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 2 3468999999999998733 111335888999999984
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.02 E-value=1e-10 Score=108.46 Aligned_cols=208 Identities=15% Similarity=0.155 Sum_probs=127.3
Q ss_pred CchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccC-CcCCCCCchhhcC
Q 041736 138 LPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRY-NEFEGKIPKALFD 216 (500)
Q Consensus 138 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~g~~p~~~~~ 216 (500)
++-.+.-+++|+.+.++.+.-. .|-+....-+.|+++...+..++.. + .+--+..+..+.-+. .-.+|..-..+-.
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~~-~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dT 282 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQDV-P-SLLPETILADPSGSEPSTSNGSALVSADT 282 (490)
T ss_pred cccchHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccccc-c-cccchhhhcCccCCCCCccCCceEEecch
Confidence 4444555677777777766433 2222222234577777666554421 1 111111111111111 1111222111111
Q ss_pred -CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEE
Q 041736 217 -KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVF 294 (500)
Q Consensus 217 -~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 294 (500)
..|++++|++|.++ .+..+... .+++.|++++|++... ..+..+.+ |++|||++|.++. +-.+-..+-+++.|
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~-L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQ-LQLLDLSGNLLAE-CVGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhccc-ceEeecccchhHh-hhhhHhhhcCEeee
Confidence 45677777777776 33333333 5678888888888732 33777776 9999999999886 34555678899999
Q ss_pred eccCcccCCCChhhhhCCCCCcEEEcccCCCCCCC-chhhcCCCCCcEEEccCCcCccCCCC
Q 041736 295 DVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTV-PDSVCSLPNLRNFSFDYNFFTGESPV 355 (500)
Q Consensus 295 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~~p~ 355 (500)
.|+.|.|. .+ +.+.++-+|..||+++|+|...- -..+++++-|+++.|.+|.+.+.+..
T Consensus 358 ~La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 358 KLAQNKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred ehhhhhHh-hh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 99999987 32 46778888999999999987321 23578899999999999999877653
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=7.2e-11 Score=114.74 Aligned_cols=203 Identities=22% Similarity=0.231 Sum_probs=143.1
Q ss_pred cCCCCCCEEeCcCCcCCCcCc--hhccCCCCCcEEeccCCcCCCCCchhhc---CCCCCeEEccCCCccCCCCCccC--C
Q 041736 167 NKLKLLFELDLSNNRFAGKFP--YVVLGLPKLKFLDLRYNEFEGKIPKALF---DKDLDAVFINNNRFSFELPDNIG--N 239 (500)
Q Consensus 167 ~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~N~l~g~~p~~~~---~~~L~~L~l~~n~l~~~~p~~~~--~ 239 (500)
.++.+|++..|.+..+.. .. .....|++++.|||+.|-|..-.+..-+ .++|+.|+++.|++..-...... .
T Consensus 118 sn~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 567889999999988762 23 4667899999999999988732222111 18999999999998743322221 2
Q ss_pred CCcceEEeccccccccCc-hhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCCh--hhhhCCCCCc
Q 041736 240 SPVSVLVLANNKFHGCLP-LSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELP--DTIAEMTSLQ 316 (500)
Q Consensus 240 ~~L~~L~l~~n~l~~~~p-~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~ 316 (500)
..++.|.|+.|+++...- ..+..++. |+.|+|..|..-..-......++.|+.|||++|++-. .+ ...+.++.|+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPs-l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPS-LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLN 274 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCc-HHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchh
Confidence 679999999999985322 23334554 9999999996433333445678899999999999873 33 4567899999
Q ss_pred EEEcccCCCCCC-Cchh-----hcCCCCCcEEEccCCcCccC-----CCCCccCCEEEcCCCCCCCC
Q 041736 317 QLNVAHNMLSGT-VPDS-----VCSLPNLRNFSFDYNFFTGE-----SPVCLDLQGFDDKRNCLRDK 372 (500)
Q Consensus 317 ~L~L~~N~l~g~-ip~~-----l~~l~~L~~L~Ls~N~l~g~-----~p~~~~L~~l~l~~N~l~~~ 372 (500)
.|+++.+.+... +++. ...+++|++|+++.|++... +-...+|..|.+..|.+...
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 999999988742 2332 45678999999999998533 22233566666666666543
No 35
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.94 E-value=6.5e-11 Score=121.50 Aligned_cols=104 Identities=23% Similarity=0.194 Sum_probs=50.1
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL 201 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 201 (500)
..+..+++..|.+.. +-..+..+.+|+.|++.+|.|.+. ...+..+.+|++|+|++|.|+... .+..+..|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhee
Confidence 344444555555543 222345555566666666655522 222445555666666666655331 2344445555666
Q ss_pred cCCcCCCCCchhhcCCCCCeEEccCCCcc
Q 041736 202 RYNEFEGKIPKALFDKDLDAVFINNNRFS 230 (500)
Q Consensus 202 s~N~l~g~~p~~~~~~~L~~L~l~~n~l~ 230 (500)
++|.++ .+...-....|+.+++++|++.
T Consensus 148 ~~N~i~-~~~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 148 SGNLIS-DISGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred ccCcch-hccCCccchhhhcccCCcchhh
Confidence 666555 3332222344444455544444
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=8.7e-10 Score=97.84 Aligned_cols=81 Identities=26% Similarity=0.397 Sum_probs=20.5
Q ss_pred CcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhh-hCCCCCcEEEcccCCCCCCC-chhhcCCCCCcEEEc
Q 041736 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTI-AEMTSLQQLNVAHNMLSGTV-PDSVCSLPNLRNFSF 344 (500)
Q Consensus 267 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~N~l~g~i-p~~l~~l~~L~~L~L 344 (500)
|+.|+|++|.|+.. +.+..+.+|++|++++|+|+ .+...+ ..+++|+.|+|++|+|...- -..+..+++|++|+|
T Consensus 44 L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L 120 (175)
T PF14580_consen 44 LEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSL 120 (175)
T ss_dssp --EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-
T ss_pred CCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeec
Confidence 44444444444432 23344444555555555554 222222 23444555555555443210 123344445555555
Q ss_pred cCCcCc
Q 041736 345 DYNFFT 350 (500)
Q Consensus 345 s~N~l~ 350 (500)
.+|.++
T Consensus 121 ~~NPv~ 126 (175)
T PF14580_consen 121 EGNPVC 126 (175)
T ss_dssp TT-GGG
T ss_pred cCCccc
Confidence 555444
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.87 E-value=1.7e-10 Score=118.38 Aligned_cols=82 Identities=27% Similarity=0.392 Sum_probs=36.9
Q ss_pred cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD 200 (500)
Q Consensus 121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 200 (500)
+.+++.|++.+|.|..... .+..+.+|++|+|++|.|+... .+..+..|+.|++++|.++.. ..+..+.+|+.++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLD 168 (414)
T ss_pred ccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhccc
Confidence 3445555555555544211 1344455555555555554222 234444455555555555421 1223344555555
Q ss_pred ccCCcCC
Q 041736 201 LRYNEFE 207 (500)
Q Consensus 201 Ls~N~l~ 207 (500)
+++|++.
T Consensus 169 l~~n~i~ 175 (414)
T KOG0531|consen 169 LSYNRIV 175 (414)
T ss_pred CCcchhh
Confidence 5555544
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=2.8e-09 Score=94.61 Aligned_cols=137 Identities=23% Similarity=0.271 Sum_probs=48.9
Q ss_pred cCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccC--CCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCC
Q 041736 202 RYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIG--NSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS 279 (500)
Q Consensus 202 s~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~--~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~ 279 (500)
..+.|. .++......++++|+|++|.++. +. .++ ..+|+.|++++|.++.. +.+..+.+ |++|++++|.|+.
T Consensus 5 t~~~i~-~~~~~~n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~-L~~L~L~~N~I~~ 78 (175)
T PF14580_consen 5 TANMIE-QIAQYNNPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPR-LKTLDLSNNRISS 78 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS--S----TT----TT---EEE--SS---S
T ss_pred cccccc-ccccccccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccChhh-hhhcccCCCCCCc
Confidence 334443 34444444678899999998873 32 233 35789999999998843 46777776 9999999999987
Q ss_pred CCcccc-ccCCCccEEeccCcccCCC-ChhhhhCCCCCcEEEcccCCCCCCC---chhhcCCCCCcEEEcc
Q 041736 280 CLPEEI-GLLKNVTVFDVSYNKLMGE-LPDTIAEMTSLQQLNVAHNMLSGTV---PDSVCSLPNLRNFSFD 345 (500)
Q Consensus 280 ~~p~~~-~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~N~l~g~i---p~~l~~l~~L~~L~Ls 345 (500)
. .+.+ ..+++|++|+|++|+|... .-..+..+++|+.|+|.+|.+...- ...+..+++|+.||-.
T Consensus 79 i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 79 I-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp --CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred c-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 3 3344 4688999999999998742 1245677889999999999887431 1245678888887643
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=4.8e-09 Score=76.52 Aligned_cols=60 Identities=33% Similarity=0.537 Sum_probs=37.8
Q ss_pred CCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcC
Q 041736 147 DIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEF 206 (500)
Q Consensus 147 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 206 (500)
+|++|++++|+|+..-+..|.++++|++|+|++|.++...+..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 566666666666644445666666666666666666655555666666666666666653
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.76 E-value=1.4e-10 Score=118.93 Aligned_cols=128 Identities=21% Similarity=0.271 Sum_probs=98.4
Q ss_pred CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEE
Q 041736 240 SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLN 319 (500)
Q Consensus 240 ~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 319 (500)
.+|...+.+.|.+. .+..++.-+.. |+.|+|++|++... ..+..++.|++|||++|.+. .+|..-..-.+|..|.
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~a-le~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPA-LESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHH-hhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeee
Confidence 45777788888877 56677777776 99999999999986 37899999999999999998 5554322234599999
Q ss_pred cccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC-----CccCCEEEcCCCCCCCCCC
Q 041736 320 VAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV-----CLDLQGFDDKRNCLRDKPR 374 (500)
Q Consensus 320 L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-----~~~L~~l~l~~N~l~~~~~ 374 (500)
|++|.++.. ..+.++.+|+.||+++|.|.+---. ...|..|++.+|.+...+.
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence 999998732 3578899999999999988764322 2257788888888866544
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.69 E-value=9.6e-09 Score=74.89 Aligned_cols=61 Identities=25% Similarity=0.459 Sum_probs=56.5
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcC
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRF 182 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 182 (500)
++|+.|++++|.+...-+..|..+++|++|+|++|.++...+..|.++++|++|+|++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3688999999999987778999999999999999999988888999999999999999985
No 42
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.57 E-value=1.5e-08 Score=93.05 Aligned_cols=109 Identities=26% Similarity=0.392 Sum_probs=71.1
Q ss_pred CcEEEEECCCCCCccc----CchhhcCCCCCCEEEcCCCCCC---ccCC-------ccccCCCCCCEEeCcCCcCCCcCc
Q 041736 122 RTVAGIDLNHGDIASY----LPEELGLLADIALFHVNTNRFC---GTLP-------RSFNKLKLLFELDLSNNRFAGKFP 187 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~---~~~p-------~~l~~l~~L~~L~Ls~n~l~~~~p 187 (500)
..++.+|||+|.|... +...+++-.+|+..++++-... ..++ ..+.++++|+..+||+|.|....+
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 5688999999998554 3345566678888888764322 1222 245678889999999998876655
Q ss_pred h----hccCCCCCcEEeccCCcCC----CCCchhhcC----------CCCCeEEccCCCcc
Q 041736 188 Y----VVLGLPKLKFLDLRYNEFE----GKIPKALFD----------KDLDAVFINNNRFS 230 (500)
Q Consensus 188 ~----~l~~l~~L~~L~Ls~N~l~----g~~p~~~~~----------~~L~~L~l~~n~l~ 230 (500)
. .+..-+.|++|.|++|.+. |.|...+++ +.|+.+.+..|++.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 4 4456678888888888764 122222221 45666666666654
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.52 E-value=1.2e-07 Score=104.61 Aligned_cols=106 Identities=22% Similarity=0.251 Sum_probs=86.6
Q ss_pred CcEEEEECCCCC--CcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEE
Q 041736 122 RTVAGIDLNHGD--IASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFL 199 (500)
Q Consensus 122 ~~l~~L~L~~n~--l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 199 (500)
..++.|-+.+|. +.......|..++.|++|||++|.=-+.+|..+++|-+||+|+|++..+. .+|..+.+|..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 468888888886 55545556888999999999998766789999999999999999999998 889999999999999
Q ss_pred eccCCcCCCCCchhhc-CCCCCeEEccCCC
Q 041736 200 DLRYNEFEGKIPKALF-DKDLDAVFINNNR 228 (500)
Q Consensus 200 ~Ls~N~l~g~~p~~~~-~~~L~~L~l~~n~ 228 (500)
++.++.....++.... ..+|++|.+....
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 9998876555555444 4889998886554
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.49 E-value=1e-07 Score=105.06 Aligned_cols=126 Identities=22% Similarity=0.245 Sum_probs=69.7
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCC--CCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEE
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNR--FCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFL 199 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 199 (500)
..++++.+-+|.+... +.. ...++|++|-+.+|. +.....+.|..++.|++|||++|.--+.+|..+++|-+|++|
T Consensus 523 ~~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 3445555555554321 111 122356666666664 332333345566667777777665555666666666677777
Q ss_pred eccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccC-CCCcceEEeccc
Q 041736 200 DLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIG-NSPVSVLVLANN 250 (500)
Q Consensus 200 ~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~~n 250 (500)
+|++..++ .+|..+.. ..|.+|++..+.....++.... ..+|++|.+...
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 77766666 66666555 5666666666554444433333 355666665443
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.42 E-value=1.5e-07 Score=86.67 Aligned_cols=213 Identities=23% Similarity=0.297 Sum_probs=145.4
Q ss_pred hhhcCCCCCCEEEcCCCCCCcc----CCccccCCCCCCEEeCcCCcCC---CcC-------chhccCCCCCcEEeccCCc
Q 041736 140 EELGLLADIALFHVNTNRFCGT----LPRSFNKLKLLFELDLSNNRFA---GKF-------PYVVLGLPKLKFLDLRYNE 205 (500)
Q Consensus 140 ~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~---~~~-------p~~l~~l~~L~~L~Ls~N~ 205 (500)
..+..+..++.++|++|.|... +...+.+-.+|+..+++.-... ..+ -..+.+++.|+..+||.|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 3456689999999999999754 3344566678888888764221 222 2456788999999999999
Q ss_pred CCCCCchhhcC-----CCCCeEEccCCCccCCCCCccC--------------CCCcceEEeccccccccCchh----hhc
Q 041736 206 FEGKIPKALFD-----KDLDAVFINNNRFSFELPDNIG--------------NSPVSVLVLANNKFHGCLPLS----FGN 262 (500)
Q Consensus 206 l~g~~p~~~~~-----~~L~~L~l~~n~l~~~~p~~~~--------------~~~L~~L~l~~n~l~~~~p~~----l~~ 262 (500)
|....+..+.. +.|++|.+++|.+.-.--.-++ ...|+++....|++...-... +..
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence 98777766543 7999999999987532222222 156899999999887432222 222
Q ss_pred ccccCcEEEeccCCCCCC-----CccccccCCCccEEeccCcccCCC----ChhhhhCCCCCcEEEcccCCCCCCCchh-
Q 041736 263 MSRTLNEVILTNNGLHSC-----LPEEIGLLKNVTVFDVSYNKLMGE----LPDTIAEMTSLQQLNVAHNMLSGTVPDS- 332 (500)
Q Consensus 263 l~~~L~~L~Ls~n~l~~~-----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~ip~~- 332 (500)
-. .|+++.+..|.|.-. +-..+..+.+|+.|||..|-++-. +...+...+.|+.|.+.+|.++..--..
T Consensus 184 h~-~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 184 HE-NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred hc-CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence 22 488999999988632 112345678999999999988742 2233455677899999999886432221
Q ss_pred ---h--cCCCCCcEEEccCCcCccCC
Q 041736 333 ---V--CSLPNLRNFSFDYNFFTGES 353 (500)
Q Consensus 333 ---l--~~l~~L~~L~Ls~N~l~g~~ 353 (500)
| ...++|..|-+.+|.+.|.+
T Consensus 263 ~~~f~e~~~p~l~~L~~~Yne~~~~~ 288 (388)
T COG5238 263 LRRFNEKFVPNLMPLPGDYNERRGGI 288 (388)
T ss_pred HHHhhhhcCCCccccccchhhhcCce
Confidence 1 23567888888898887654
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=5.3e-09 Score=97.23 Aligned_cols=59 Identities=19% Similarity=0.190 Sum_probs=33.9
Q ss_pred ccCCCccEEeccCcc-cCCCChhhhhCCCCCcEEEcccCCCCCCCch---hhcCCCCCcEEEccC
Q 041736 286 GLLKNVTVFDVSYNK-LMGELPDTIAEMTSLQQLNVAHNMLSGTVPD---SVCSLPNLRNFSFDY 346 (500)
Q Consensus 286 ~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~---~l~~l~~L~~L~Ls~ 346 (500)
..+++|..|||++|. ++...-..|.+++.|++|.|+.|.. .+|+ .+...++|.+||+.+
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 456667777776653 3333444556666777777766643 3333 244556677776554
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=8.2e-09 Score=95.97 Aligned_cols=74 Identities=19% Similarity=0.098 Sum_probs=46.9
Q ss_pred cCcEEEeccCC-CCCCCccccccCCCccEEeccCcccCCCChhh---hhCCCCCcEEEcccCCCCCCCchhhcCCCCCcE
Q 041736 266 TLNEVILTNNG-LHSCLPEEIGLLKNVTVFDVSYNKLMGELPDT---IAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRN 341 (500)
Q Consensus 266 ~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~ 341 (500)
+|.+|||++|. ++......|-+++.|++|.++.|.. .+|.. +...++|.+|++.++--.+..--....+++|+.
T Consensus 314 ~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI 391 (419)
T ss_pred ceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence 48888888765 4444456677888899998888863 45554 456788888888765333222222334555543
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.34 E-value=6e-09 Score=107.26 Aligned_cols=175 Identities=19% Similarity=0.193 Sum_probs=97.5
Q ss_pred CCcCcEEEEECCCCCCcccCchhhcCC-CCCCEEEcCCCCCC---ccCCccccC------CCCCCEEeCcCCcCCCcCch
Q 041736 119 HSIRTVAGIDLNHGDIASYLPEELGLL-ADIALFHVNTNRFC---GTLPRSFNK------LKLLFELDLSNNRFAGKFPY 188 (500)
Q Consensus 119 ~~~~~l~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~---~~~p~~l~~------l~~L~~L~Ls~n~l~~~~p~ 188 (500)
..++.|++|.|.++++... ..+..+ ..|++|...+. +. ..+....+. --.|.+.+.+.|++. .+-.
T Consensus 106 fpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD~ 181 (1096)
T KOG1859|consen 106 FPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNS-LDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMDE 181 (1096)
T ss_pred ccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHHH
Confidence 3456778888888777431 111111 23444443322 11 011111111 124667777778777 5556
Q ss_pred hccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCc-cCCCCcceEEeccccccccCchhhhcccccC
Q 041736 189 VVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDN-IGNSPVSVLVLANNKFHGCLPLSFGNMSRTL 267 (500)
Q Consensus 189 ~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~-~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L 267 (500)
++.-++.|+.|||++|+++ .........+|++|||+.|.+.. +|.. ....+|+.|++++|.++.. ..+.++.+ |
T Consensus 182 SLqll~ale~LnLshNk~~-~v~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lrnN~l~tL--~gie~Lks-L 256 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFT-KVDNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLRNNALTTL--RGIENLKS-L 256 (1096)
T ss_pred HHHHHHHhhhhccchhhhh-hhHHHHhcccccccccccchhcc-ccccchhhhhheeeeecccHHHhh--hhHHhhhh-h
Confidence 6777778888888888887 33333334677777777777762 3321 2224577777777766532 34555654 7
Q ss_pred cEEEeccCCCCCCC-ccccccCCCccEEeccCcccC
Q 041736 268 NEVILTNNGLHSCL-PEEIGLLKNVTVFDVSYNKLM 302 (500)
Q Consensus 268 ~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~ 302 (500)
+.||++.|-|.+.- -.-++.|..|+.|+|.+|.+-
T Consensus 257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 77777777666531 122345566666777776654
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=3.5e-07 Score=85.30 Aligned_cols=77 Identities=16% Similarity=0.236 Sum_probs=41.7
Q ss_pred CcEEEeccCCCCCCC-ccccccCCCccEEeccCcccCCC-ChhhhhCCCCCcEEEcccCCCCCCCch------hhcCCCC
Q 041736 267 LNEVILTNNGLHSCL-PEEIGLLKNVTVFDVSYNKLMGE-LPDTIAEMTSLQQLNVAHNMLSGTVPD------SVCSLPN 338 (500)
Q Consensus 267 L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~N~l~g~ip~------~l~~l~~ 338 (500)
+..+.+..|-+...- -.....++.+..|+|+.|+|... --..+.+++.|..|.+++|.+.+.+.. -++.+++
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~ 280 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTK 280 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccc
Confidence 555555656443321 12233455566677777776531 113456677777777777766543322 2455666
Q ss_pred CcEEE
Q 041736 339 LRNFS 343 (500)
Q Consensus 339 L~~L~ 343 (500)
++.|+
T Consensus 281 v~vLN 285 (418)
T KOG2982|consen 281 VQVLN 285 (418)
T ss_pred eEEec
Confidence 66654
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.15 E-value=3.7e-07 Score=75.67 Aligned_cols=108 Identities=20% Similarity=0.272 Sum_probs=76.8
Q ss_pred CcCcEEEEECCCCCCcccCchhh-cCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcE
Q 041736 120 SIRTVAGIDLNHGDIASYLPEEL-GLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKF 198 (500)
Q Consensus 120 ~~~~l~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 198 (500)
+..+++.++|++|.+.. +|..| ..++.++.|+|++|.|+ .+|.++..++.|+.|++++|.+. ..|..+..|.+|..
T Consensus 51 ~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM 127 (177)
T ss_pred CCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence 34678888888888866 44444 45668888888888887 77888888888888888888887 67777777888888
Q ss_pred EeccCCcCCCCCchhhcCCCC-CeEEccCCCccC
Q 041736 199 LDLRYNEFEGKIPKALFDKDL-DAVFINNNRFSF 231 (500)
Q Consensus 199 L~Ls~N~l~g~~p~~~~~~~L-~~L~l~~n~l~~ 231 (500)
|+..+|.+. .++..++...+ -...++++.+.+
T Consensus 128 Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 128 LDSPENARA-EIDVDLFYSSLPALIKLGNEPLGD 160 (177)
T ss_pred hcCCCCccc-cCcHHHhccccHHHHHhcCCcccc
Confidence 888888776 66655554322 223344444443
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.13 E-value=1.2e-07 Score=78.43 Aligned_cols=78 Identities=22% Similarity=0.356 Sum_probs=33.6
Q ss_pred EEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCc
Q 041736 269 EVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNF 348 (500)
Q Consensus 269 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 348 (500)
..+|++|.+....+.....++.++.|+|++|.|+ .+|.++..++.|+.|+++.|.|. ..|..+..+.+|..||..+|.
T Consensus 57 ~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 57 KISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred EEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCc
Confidence 3344444444422222222334444444444444 44444444444444444444444 333333334444444444443
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.96 E-value=2.9e-05 Score=77.53 Aligned_cols=137 Identities=15% Similarity=0.193 Sum_probs=80.2
Q ss_pred hhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCC-cCCCCCchhhcCCC
Q 041736 140 EELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYN-EFEGKIPKALFDKD 218 (500)
Q Consensus 140 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~g~~p~~~~~~~ 218 (500)
..+..+.++++|++++|.|+ .+|. + -.+|++|+++++.--..+|..+. .+|++|++++| .+. .+| ..
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP-----~s 113 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP-----ES 113 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc-----cc
Confidence 34556789999999999887 5552 1 23699999988443336665553 58999999988 444 444 45
Q ss_pred CCeEEccCCCcc--CCCCCccCCCCcceEEecccccc--ccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEE
Q 041736 219 LDAVFINNNRFS--FELPDNIGNSPVSVLVLANNKFH--GCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVF 294 (500)
Q Consensus 219 L~~L~l~~n~l~--~~~p~~~~~~~L~~L~l~~n~l~--~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 294 (500)
|+.|++..+... +.+|. +|+.|.+.+++.. ..++ ..++.+|++|++++|.... +|..+- .+|+.|
T Consensus 114 Le~L~L~~n~~~~L~~LPs-----sLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L 182 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVPN-----GLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNII-LPEKLP--ESLQSI 182 (426)
T ss_pred cceEEeCCCCCcccccCcc-----hHhheeccccccccccccc---cccCCcccEEEecCCCccc-Cccccc--ccCcEE
Confidence 777777655442 23333 3555555432211 0111 1233357777777766542 222222 367777
Q ss_pred eccCc
Q 041736 295 DVSYN 299 (500)
Q Consensus 295 ~Ls~n 299 (500)
+++.+
T Consensus 183 ~ls~n 187 (426)
T PRK15386 183 TLHIE 187 (426)
T ss_pred Eeccc
Confidence 77665
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=1.1e-05 Score=54.02 Aligned_cols=36 Identities=42% Similarity=0.556 Sum_probs=16.0
Q ss_pred CCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCC
Q 041736 171 LLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFE 207 (500)
Q Consensus 171 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 207 (500)
+|++|+|++|+|+ .++..+.+|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 33334444555555555555444
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=1.4e-06 Score=81.32 Aligned_cols=210 Identities=20% Similarity=0.227 Sum_probs=114.1
Q ss_pred cEEEEECCCCCCccc-Cchhhc-CCCCCCEEEcCCCCCCc--cCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcE
Q 041736 123 TVAGIDLNHGDIASY-LPEELG-LLADIALFHVNTNRFCG--TLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKF 198 (500)
Q Consensus 123 ~l~~L~L~~n~l~~~-~p~~l~-~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 198 (500)
.++-|.+.++.|... .-..|+ ..++++.|||.+|.|+. +|-..+.+|+.|++|+|+.|.+...|-..-..+.+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 344555666655322 112233 45677888888887762 33344567777888888888777443322134567777
Q ss_pred EeccCCcCCCCCchhhcC--CCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCc--hhhhcccccCcEEEecc
Q 041736 199 LDLRYNEFEGKIPKALFD--KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLP--LSFGNMSRTLNEVILTN 274 (500)
Q Consensus 199 L~Ls~N~l~g~~p~~~~~--~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p--~~l~~l~~~L~~L~Ls~ 274 (500)
|.|.+..+.-.--.++.. +.+++|+++.|++. .+++..|.+....+ ..+..... +..+.++-
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r-------------q~n~Dd~c~e~~s~~v~tlh~~~c-~~~~w~~~ 191 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR-------------QLNLDDNCIEDWSTEVLTLHQLPC-LEQLWLNK 191 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhh-------------hhccccccccccchhhhhhhcCCc-HHHHHHHH
Confidence 777776654221111111 45566666666443 22223332221110 00011111 22222333
Q ss_pred CCCCCCCccccccCCCccEEeccCcccCCCC-hhhhhCCCCCcEEEcccCCCCCCC-chhhcCCCCCcEEEccCCcCccC
Q 041736 275 NGLHSCLPEEIGLLKNVTVFDVSYNKLMGEL-PDTIAEMTSLQQLNVAHNMLSGTV-PDSVCSLPNLRNFSFDYNFFTGE 352 (500)
Q Consensus 275 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~ 352 (500)
|++.. .++++..+-+..|.+...- -.....++.+.-|+|+.|+|...- -+.+..+++|+.|.+++|.+...
T Consensus 192 ~~l~r-------~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 192 NKLSR-------IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred HhHHh-------hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 33333 3456777777777665321 123345667778899999886421 24578889999999999988654
Q ss_pred C
Q 041736 353 S 353 (500)
Q Consensus 353 ~ 353 (500)
+
T Consensus 265 l 265 (418)
T KOG2982|consen 265 L 265 (418)
T ss_pred c
Confidence 3
No 55
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.87 E-value=2e-05 Score=52.63 Aligned_cols=38 Identities=34% Similarity=0.626 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCC---CCCCCcCceecC
Q 041736 76 SAYIALQAWKKAIISDPWNLTSNWVG---CYVCNYTGVFCA 113 (500)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~~~~~~w~~---~~~c~~~gv~c~ 113 (500)
++..||++||..+..++...+.+|.. .++|+|.||+|+
T Consensus 3 ~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 3 QDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred HHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 46778888888877677788999974 599999999994
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.82 E-value=2.2e-05 Score=52.62 Aligned_cols=35 Identities=29% Similarity=0.598 Sum_probs=13.6
Q ss_pred ccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCC
Q 041736 291 VTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS 326 (500)
Q Consensus 291 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 326 (500)
|++|++++|+|+ .++..++++++|++|++++|.|+
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444444 23333444444444444444443
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=0.00018 Score=72.06 Aligned_cols=132 Identities=19% Similarity=0.281 Sum_probs=85.5
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCC-cCCCcCchhccCCCCCcEEe
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNN-RFAGKFPYVVLGLPKLKFLD 200 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~ 200 (500)
.+++.|++++|.++. +|. --.+|++|.++++.--..+|+.+ ..+|++|++++| .+. .+| .+|+.|+
T Consensus 52 ~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccceEE
Confidence 568899999998765 342 23479999999853323666655 257999999998 554 444 3577888
Q ss_pred ccCCcCC--CCCchhhcCCCCCeEEccCCCccC--CCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCC
Q 041736 201 LRYNEFE--GKIPKALFDKDLDAVFINNNRFSF--ELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNG 276 (500)
Q Consensus 201 Ls~N~l~--g~~p~~~~~~~L~~L~l~~n~l~~--~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~ 276 (500)
++.+... +.+| .+|+.|.+.+++... .++. .--.+|++|++++|... .+|..+. .+|++|+++.+.
T Consensus 119 L~~n~~~~L~~LP-----ssLk~L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i-~LP~~LP---~SLk~L~ls~n~ 188 (426)
T PRK15386 119 IKGSATDSIKNVP-----NGLTSLSINSYNPENQARIDN-LISPSLKTLSLTGCSNI-ILPEKLP---ESLQSITLHIEQ 188 (426)
T ss_pred eCCCCCcccccCc-----chHhheecccccccccccccc-ccCCcccEEEecCCCcc-cCccccc---ccCcEEEecccc
Confidence 8776643 2344 467788775433211 1111 11157999999998865 3444333 359999998764
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.49 E-value=0.00021 Score=63.49 Aligned_cols=90 Identities=19% Similarity=0.276 Sum_probs=63.2
Q ss_pred hhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCC--CCchhhcCCC
Q 041736 260 FGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSG--TVPDSVCSLP 337 (500)
Q Consensus 260 l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g--~ip~~l~~l~ 337 (500)
++....+...+||++|.+... ..|..+..|.+|.|++|+|+..-|..-.-+++|+.|.|.+|+|.. .+ +-+..++
T Consensus 37 lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p 113 (233)
T KOG1644|consen 37 LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCP 113 (233)
T ss_pred ccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCC
Confidence 444444577888888887653 456677888888888888885555544556778888888888762 12 2366778
Q ss_pred CCcEEEccCCcCccC
Q 041736 338 NLRNFSFDYNFFTGE 352 (500)
Q Consensus 338 ~L~~L~Ls~N~l~g~ 352 (500)
.|++|.+-+|..+..
T Consensus 114 ~L~~Ltll~Npv~~k 128 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEHK 128 (233)
T ss_pred ccceeeecCCchhcc
Confidence 888888888877643
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.31 E-value=0.00034 Score=62.27 Aligned_cols=82 Identities=28% Similarity=0.322 Sum_probs=53.0
Q ss_pred cEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCc--hhccCCCCCcEEe
Q 041736 123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFP--YVVLGLPKLKFLD 200 (500)
Q Consensus 123 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~ 200 (500)
....+||++|++... +.|..+.+|++|.|++|+|+.+-|.--.-+.+|+.|.|.+|+|. .+- .-+..++.|++|.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence 445677888777543 34666777888888888887554443344566778888877776 211 1245567777777
Q ss_pred ccCCcCC
Q 041736 201 LRYNEFE 207 (500)
Q Consensus 201 Ls~N~l~ 207 (500)
+-+|..+
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 7777665
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.29 E-value=0.0001 Score=79.68 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=63.9
Q ss_pred CCcceEEecccccccc-CchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCC-CChhhhhCCCCCcE
Q 041736 240 SPVSVLVLANNKFHGC-LPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMG-ELPDTIAEMTSLQQ 317 (500)
Q Consensus 240 ~~L~~L~l~~n~l~~~-~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~ 317 (500)
..|+.|.+.+-.+... .-....++++ |..||+|+++++.. ..+++|++|+.|.+.+=.+.. ..-..+.++++|+.
T Consensus 148 PsL~sL~i~~~~~~~~dF~~lc~sFpN-L~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQLCASFPN-LRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred cccceEEecCceecchhHHHHhhccCc-cceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 3466666665444321 1122334454 77777777777653 556777777777776665553 22234566777777
Q ss_pred EEcccCCCCCCC--c----hhhcCCCCCcEEEccCCcCccC
Q 041736 318 LNVAHNMLSGTV--P----DSVCSLPNLRNFSFDYNFFTGE 352 (500)
Q Consensus 318 L~L~~N~l~g~i--p----~~l~~l~~L~~L~Ls~N~l~g~ 352 (500)
||+|........ . +.-..+++|+.||.|++.+++.
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 777766544211 1 1223567777777777766654
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.03 E-value=0.00016 Score=78.10 Aligned_cols=132 Identities=15% Similarity=0.238 Sum_probs=79.4
Q ss_pred CcEEEEECCCCCCc-ccCchhhc-CCCCCCEEEcCCCCCCc-cCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcE
Q 041736 122 RTVAGIDLNHGDIA-SYLPEELG-LLADIALFHVNTNRFCG-TLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKF 198 (500)
Q Consensus 122 ~~l~~L~L~~n~l~-~~~p~~l~-~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 198 (500)
.+|++||+++...- ..-+..++ .|+.|+.|.+.+-.+.. ..-....++++|..||+|+.+++.. ..++.|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 56788888876542 22233343 57888888888876642 2233446778888888888888744 56778888888
Q ss_pred EeccCCcCCC--CCchhhcCCCCCeEEccCCCccCCC--CC-----ccCCCCcceEEecccccccc
Q 041736 199 LDLRYNEFEG--KIPKALFDKDLDAVFINNNRFSFEL--PD-----NIGNSPVSVLVLANNKFHGC 255 (500)
Q Consensus 199 L~Ls~N~l~g--~~p~~~~~~~L~~L~l~~n~l~~~~--p~-----~~~~~~L~~L~l~~n~l~~~ 255 (500)
|.+.+=.|.. .+-+.+..++|++||++........ .. .....+|+.||.+++.+.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 8877766652 2222223378888888766554211 00 00113466666666655543
No 62
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=96.64 E-value=0.022 Score=56.99 Aligned_cols=36 Identities=14% Similarity=0.376 Sum_probs=18.2
Q ss_pred CCCCCCCCCCcCceecCCCCCCCCcCcEEEEECCCCCCc
Q 041736 97 SNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIA 135 (500)
Q Consensus 97 ~~w~~~~~c~~~gv~c~~~~~~~~~~~l~~L~L~~n~l~ 135 (500)
..|.-..+| |+.|-..-...+..-++..||.++.|.
T Consensus 55 ~~W~~~~~~---Gal~lVkD~~~rsyFlrl~di~~~rli 90 (569)
T KOG3671|consen 55 NHWNKTGLC---GALCLVKDNAQRSYFLRLVDIVNNRLI 90 (569)
T ss_pred hhhccccCc---eeEEEeeccccceeeeEEeeecCceee
Confidence 346654444 455532111223345677777777653
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.00015 Score=67.51 Aligned_cols=89 Identities=16% Similarity=0.137 Sum_probs=63.4
Q ss_pred cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcC-chhccCCCCCcEE
Q 041736 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF-PYVVLGLPKLKFL 199 (500)
Q Consensus 121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L 199 (500)
+.+++.|++-+++|..+ ....+++.|++|.|+-|.|+..- .|..+++|++|+|..|.|...- -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34567777777777654 23457888888888888887443 4677888888888888887321 1256788888888
Q ss_pred eccCCcCCCCCchh
Q 041736 200 DLRYNEFEGKIPKA 213 (500)
Q Consensus 200 ~Ls~N~l~g~~p~~ 213 (500)
.|..|.-.|.-+..
T Consensus 94 WL~ENPCc~~ag~n 107 (388)
T KOG2123|consen 94 WLDENPCCGEAGQN 107 (388)
T ss_pred hhccCCcccccchh
Confidence 88888877665543
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.35 E-value=0.0029 Score=58.74 Aligned_cols=61 Identities=30% Similarity=0.438 Sum_probs=32.0
Q ss_pred CCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCC--cCCCcCchhccCCCCCcEEeccCCcCC
Q 041736 145 LADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNN--RFAGKFPYVVLGLPKLKFLDLRYNEFE 207 (500)
Q Consensus 145 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 207 (500)
+..|+.|++.+..++.. ..|-.|++|++|+++.| ++++.+.-....+++|++|+|++|++.
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 34444444544444411 12344556666666666 444444444444566666666666664
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.31 E-value=0.0026 Score=59.04 Aligned_cols=82 Identities=20% Similarity=0.308 Sum_probs=38.3
Q ss_pred CcceEEeccccccccCchhhhcccccCcEEEeccC--CCCCCCccccccCCCccEEeccCcccCC--CChhhhhCCCCCc
Q 041736 241 PVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNN--GLHSCLPEEIGLLKNVTVFDVSYNKLMG--ELPDTIAEMTSLQ 316 (500)
Q Consensus 241 ~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~ 316 (500)
.|+.|.+.+..++.. ..|-.+++ |++|+++.| .+.+-+.-....+++|++|++++|+|.. ++ ..+..+.+|.
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~-LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL~ 119 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPK-LKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENLK 119 (260)
T ss_pred chhhhhhhccceeec--ccCCCcch-hhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcchh
Confidence 344444444444421 23344444 666666666 3333333333444566666666665552 01 1123344455
Q ss_pred EEEcccCCCC
Q 041736 317 QLNVAHNMLS 326 (500)
Q Consensus 317 ~L~L~~N~l~ 326 (500)
.|++.+|..+
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 5555555444
No 66
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=96.27 E-value=0.05 Score=54.62 Aligned_cols=13 Identities=8% Similarity=0.097 Sum_probs=8.8
Q ss_pred ccCCHHHHHHHHH
Q 041736 32 GVFLEAEAAFIKQ 44 (500)
Q Consensus 32 ~~~~~~~~~~l~~ 44 (500)
..|+..|-++|.+
T Consensus 19 ~lLt~~ene~lf~ 31 (569)
T KOG3671|consen 19 TLLTSEENETLFK 31 (569)
T ss_pred cccchhHHHHHHH
Confidence 4477888888544
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.00047 Score=64.25 Aligned_cols=96 Identities=19% Similarity=0.195 Sum_probs=45.5
Q ss_pred cceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCCh--hhhhCCCCCcEEE
Q 041736 242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELP--DTIAEMTSLQQLN 319 (500)
Q Consensus 242 L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~ 319 (500)
++.|++.+++++++ .-..+|.. |+.|.|+-|+|+.. ..+..+++|++|.|..|.|.. +- .-+.++++|+.|.
T Consensus 21 vkKLNcwg~~L~DI--sic~kMp~-lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDI--SICEKMPL-LEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLW 94 (388)
T ss_pred hhhhcccCCCccHH--HHHHhccc-ceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHh
Confidence 44555555555432 11223333 55555555555543 334555555555555555552 21 1234555555555
Q ss_pred cccCCCCCCCch-----hhcCCCCCcEEE
Q 041736 320 VAHNMLSGTVPD-----SVCSLPNLRNFS 343 (500)
Q Consensus 320 L~~N~l~g~ip~-----~l~~l~~L~~L~ 343 (500)
|..|.-.|.-+. .+..+++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 555544443322 234445555443
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.83 E-value=0.031 Score=46.87 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=17.8
Q ss_pred cEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCc
Q 041736 123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLS 178 (500)
Q Consensus 123 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 178 (500)
+|+.+.+.. .+...-...|..+.+|+.+++.++ +...--..|.++.+|+++.+.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 344444442 233333334444444444444443 322222334444444444443
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.82 E-value=7.1e-05 Score=77.41 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=36.4
Q ss_pred EEEEECCCCCCcccCc----hhhcCCCCCCEEEcCCCCCCccCC----ccccCC-CCCCEEeCcCCcCCCc----Cchhc
Q 041736 124 VAGIDLNHGDIASYLP----EELGLLADIALFHVNTNRFCGTLP----RSFNKL-KLLFELDLSNNRFAGK----FPYVV 190 (500)
Q Consensus 124 l~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l-~~L~~L~Ls~n~l~~~----~p~~l 190 (500)
+..|+|.+|.+..... ..+..+..|+.|++++|.+.+.-- ..+... ..|++|++..|.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 4555566665543322 223444555555555555542211 111111 3344455555554432 22333
Q ss_pred cCCCCCcEEeccCCcC
Q 041736 191 LGLPKLKFLDLRYNEF 206 (500)
Q Consensus 191 ~~l~~L~~L~Ls~N~l 206 (500)
.....|+.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 3344455555555544
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.38 E-value=0.00017 Score=74.65 Aligned_cols=84 Identities=18% Similarity=0.126 Sum_probs=52.3
Q ss_pred CCCEEEcCCCCCCccC----CccccCCCCCCEEeCcCCcCCCcCc----hhccCC-CCCcEEeccCCcCCCCCchhh---
Q 041736 147 DIALFHVNTNRFCGTL----PRSFNKLKLLFELDLSNNRFAGKFP----YVVLGL-PKLKFLDLRYNEFEGKIPKAL--- 214 (500)
Q Consensus 147 ~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l-~~L~~L~Ls~N~l~g~~p~~~--- 214 (500)
.+..|.|.+|.+.... -..+..+..|+.|++++|.+.+.-- ..+... ..|++|++..|.+++.--..+
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 3778888888886432 3345567788888888888874322 223333 557778888887764332222
Q ss_pred -cC-CCCCeEEccCCCcc
Q 041736 215 -FD-KDLDAVFINNNRFS 230 (500)
Q Consensus 215 -~~-~~L~~L~l~~n~l~ 230 (500)
.. ..+++++++.|.+.
T Consensus 168 L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HhcccchhHHHHHhcccc
Confidence 11 56677777777664
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.25 E-value=0.0078 Score=33.56 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=7.5
Q ss_pred ccEEeccCcccCCCChhh
Q 041736 291 VTVFDVSYNKLMGELPDT 308 (500)
Q Consensus 291 L~~L~Ls~n~l~~~~p~~ 308 (500)
|++|||++|+|+ .+|.+
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 444444444444 34433
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.14 E-value=0.0082 Score=33.47 Aligned_cols=18 Identities=39% Similarity=0.469 Sum_probs=8.3
Q ss_pred CCEEeCcCCcCCCcCchhc
Q 041736 172 LFELDLSNNRFAGKFPYVV 190 (500)
Q Consensus 172 L~~L~Ls~n~l~~~~p~~l 190 (500)
|++|||++|+|+ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555444 444333
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.82 E-value=0.076 Score=44.45 Aligned_cols=105 Identities=10% Similarity=0.116 Sum_probs=58.7
Q ss_pred hhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcC--C
Q 041736 140 EELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--K 217 (500)
Q Consensus 140 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~--~ 217 (500)
..|.++.+|+.+.+.. .+...-...|.++.+|+.+++.++ +...-...|.++.+|+.+.+.. .+. .+....+. .
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence 3577778899999885 566455567888888999998875 6645556778887899999865 433 44444444 7
Q ss_pred CCCeEEccCCCccCCCCCccCCCCcceEEecc
Q 041736 218 DLDAVFINNNRFSFELPDNIGNSPVSVLVLAN 249 (500)
Q Consensus 218 ~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~ 249 (500)
+|+.+.+..+ +...-...+...+++.+.+..
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNCNLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT-T--EEE-TT
T ss_pred cccccccCcc-ccEEchhhhcCCCceEEEECC
Confidence 8888888665 432223344445777777664
No 74
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.37 E-value=0.0029 Score=62.33 Aligned_cols=245 Identities=16% Similarity=0.152 Sum_probs=132.7
Q ss_pred CcEEEEECCCCCCcccCc--hhhcCCCCCCEEEcCCCC-CCccCCccc-cCCCCCCEEeCcCC-cCCCcCch-hccCCCC
Q 041736 122 RTVAGIDLNHGDIASYLP--EELGLLADIALFHVNTNR-FCGTLPRSF-NKLKLLFELDLSNN-RFAGKFPY-VVLGLPK 195 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~Ls~n-~l~~~~p~-~l~~l~~ 195 (500)
..++.|.|.++.-.+.-+ ....+++++++|++.++. ++...-..+ ..+.+|++|+|..+ .++...-. ....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 457788888765444322 234577888888888774 333222223 24677888888773 34432222 2345778
Q ss_pred CcEEeccCC-cCCCCCchhhcC--CC--------------------------CCeEEccCCC-ccCCCC--CccCCCCcc
Q 041736 196 LKFLDLRYN-EFEGKIPKALFD--KD--------------------------LDAVFINNNR-FSFELP--DNIGNSPVS 243 (500)
Q Consensus 196 L~~L~Ls~N-~l~g~~p~~~~~--~~--------------------------L~~L~l~~n~-l~~~~p--~~~~~~~L~ 243 (500)
|++|+++++ +++|.--..+.. .. +..+++.++. ++..-- -.-+...|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 888888876 344311111111 11 2223332331 111100 001124577
Q ss_pred eEEeccccc-cccCchhhhcccccCcEEEeccCCC-CCCCcccc-ccCCCccEEeccCcccC--CCChhhhhCCCCCcEE
Q 041736 244 VLVLANNKF-HGCLPLSFGNMSRTLNEVILTNNGL-HSCLPEEI-GLLKNVTVFDVSYNKLM--GELPDTIAEMTSLQQL 318 (500)
Q Consensus 244 ~L~l~~n~l-~~~~p~~l~~l~~~L~~L~Ls~n~l-~~~~p~~~-~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L 318 (500)
+|..+++.. +...-..++.-..+|+.|.++.++. +..-...+ .+...|+.+|+..+... +++-..-.+++.|++|
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 777776543 2223344554444699999998873 33222222 35678999999887653 1232333467889999
Q ss_pred EcccCCCCCCC-----chhhcCCCCCcEEEccCCcCccCC-----CCCccCCEEEcCC
Q 041736 319 NVAHNMLSGTV-----PDSVCSLPNLRNFSFDYNFFTGES-----PVCLDLQGFDDKR 366 (500)
Q Consensus 319 ~L~~N~l~g~i-----p~~l~~l~~L~~L~Ls~N~l~g~~-----p~~~~L~~l~l~~ 366 (500)
.|+++.+.... ...-+.+..|..+.|++....-+. ..|.+|+.+++.+
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence 99988653221 223355667888888887654321 2244566665543
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.54 E-value=0.0019 Score=58.74 Aligned_cols=88 Identities=17% Similarity=0.235 Sum_probs=74.3
Q ss_pred CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCc
Q 041736 118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLK 197 (500)
Q Consensus 118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 197 (500)
...+.+++.||++.|.+.. +-..|+.++.|..|+++.|.+. ..|..++.+..++.+++.+|+++ ..|.++..++.++
T Consensus 38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 3456889999999998754 3345677888999999999987 78888999999999999999998 8899999999999
Q ss_pred EEeccCCcCCC
Q 041736 198 FLDLRYNEFEG 208 (500)
Q Consensus 198 ~L~Ls~N~l~g 208 (500)
++++..|.|..
T Consensus 115 ~~e~k~~~~~~ 125 (326)
T KOG0473|consen 115 KNEQKKTEFFR 125 (326)
T ss_pred hhhhccCcchH
Confidence 99999998763
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.64 E-value=0.11 Score=26.79 Aligned_cols=11 Identities=73% Similarity=0.905 Sum_probs=3.4
Q ss_pred CCEEeCcCCcC
Q 041736 172 LFELDLSNNRF 182 (500)
Q Consensus 172 L~~L~Ls~n~l 182 (500)
|++|+|++|+|
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.38 E-value=0.0064 Score=55.45 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=52.0
Q ss_pred CcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccC
Q 041736 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDY 346 (500)
Q Consensus 267 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~ 346 (500)
.+.||++.|++.. .-..|+.++.|+.||++.|.+. .+|..++.+..+..+++.+|..+ ..|.++...+.++++++-.
T Consensus 44 ~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 44 VTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhcc
Confidence 6666666666543 3345556666677777777766 56666666666666666666665 5666677777777777666
Q ss_pred CcCc
Q 041736 347 NFFT 350 (500)
Q Consensus 347 N~l~ 350 (500)
|.|.
T Consensus 121 ~~~~ 124 (326)
T KOG0473|consen 121 TEFF 124 (326)
T ss_pred Ccch
Confidence 6653
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.11 E-value=0.035 Score=57.97 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=8.3
Q ss_pred hhCCCCCcEEEcccCC
Q 041736 309 IAEMTSLQQLNVAHNM 324 (500)
Q Consensus 309 l~~l~~L~~L~L~~N~ 324 (500)
+..+.+|+.+.|.++.
T Consensus 358 ~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG 373 (482)
T ss_pred HhcCCCcchhhhhhhh
Confidence 3445555555555554
No 79
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.78 E-value=0.032 Score=58.32 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=12.3
Q ss_pred ccccCCCccEEeccCcccC
Q 041736 284 EIGLLKNVTVFDVSYNKLM 302 (500)
Q Consensus 284 ~~~~l~~L~~L~Ls~n~l~ 302 (500)
.+..+.+|+.+.+.++.++
T Consensus 357 ~~~~~~~l~~~~l~~~~~~ 375 (482)
T KOG1947|consen 357 ILRSCPKLTDLSLSYCGIS 375 (482)
T ss_pred HHhcCCCcchhhhhhhhcc
Confidence 3456677777777777643
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.98 E-value=0.29 Score=28.28 Aligned_cols=14 Identities=43% Similarity=0.714 Sum_probs=6.7
Q ss_pred CCCcEEeccCCcCC
Q 041736 194 PKLKFLDLRYNEFE 207 (500)
Q Consensus 194 ~~L~~L~Ls~N~l~ 207 (500)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34445555555444
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.98 E-value=0.29 Score=28.28 Aligned_cols=14 Identities=43% Similarity=0.714 Sum_probs=6.7
Q ss_pred CCCcEEeccCCcCC
Q 041736 194 PKLKFLDLRYNEFE 207 (500)
Q Consensus 194 ~~L~~L~Ls~N~l~ 207 (500)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34445555555444
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.76 E-value=0.1 Score=46.86 Aligned_cols=82 Identities=21% Similarity=0.169 Sum_probs=56.3
Q ss_pred cEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCC-cccc-CCCCCCEEeCcCC-cCCCcCchhccCCCCCcEE
Q 041736 123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLP-RSFN-KLKLLFELDLSNN-RFAGKFPYVVLGLPKLKFL 199 (500)
Q Consensus 123 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~-~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L 199 (500)
.|+.+|-++..|.+.--+.+..++.|+.|.+.++.--+.-. +.++ -..+|+.|+|++| +|+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 58899999998877666677888888888888774332211 1122 3467999999976 4665444566777888888
Q ss_pred eccCC
Q 041736 200 DLRYN 204 (500)
Q Consensus 200 ~Ls~N 204 (500)
.|.+=
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 77653
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.93 E-value=0.74 Score=26.51 Aligned_cols=15 Identities=60% Similarity=0.709 Sum_probs=9.7
Q ss_pred CCCCCEEeCcCCcCC
Q 041736 169 LKLLFELDLSNNRFA 183 (500)
Q Consensus 169 l~~L~~L~Ls~n~l~ 183 (500)
|++|++|+|++|+|.
T Consensus 1 L~~L~~L~L~~N~l~ 15 (26)
T smart00369 1 LPNLRELDLSNNQLS 15 (26)
T ss_pred CCCCCEEECCCCcCC
Confidence 345666777777666
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.93 E-value=0.74 Score=26.51 Aligned_cols=15 Identities=60% Similarity=0.709 Sum_probs=9.7
Q ss_pred CCCCCEEeCcCCcCC
Q 041736 169 LKLLFELDLSNNRFA 183 (500)
Q Consensus 169 l~~L~~L~Ls~n~l~ 183 (500)
|++|++|+|++|+|.
T Consensus 1 L~~L~~L~L~~N~l~ 15 (26)
T smart00370 1 LPNLRELDLSNNQLS 15 (26)
T ss_pred CCCCCEEECCCCcCC
Confidence 345666777777666
No 85
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=84.32 E-value=2.3 Score=43.20 Aligned_cols=60 Identities=18% Similarity=0.248 Sum_probs=37.2
Q ss_pred CccEEeccCcccCCCCh---hhhhCCCCCcEEEcccCCCCC----CCchhhcCCCCCcEEEccCCcC
Q 041736 290 NVTVFDVSYNKLMGELP---DTIAEMTSLQQLNVAHNMLSG----TVPDSVCSLPNLRNFSFDYNFF 349 (500)
Q Consensus 290 ~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~L~~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l 349 (500)
-++.+.++.|.+....- ..+..-+.+..|++++|.... .+|..+.....++.+..+.|..
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 36677778887763322 223445788999999997643 3444554555666666666654
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.02 E-value=0.28 Score=27.72 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=6.7
Q ss_pred CCccEEeccCcccCC
Q 041736 289 KNVTVFDVSYNKLMG 303 (500)
Q Consensus 289 ~~L~~L~Ls~n~l~~ 303 (500)
++|++|+|++|+|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555543
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=81.62 E-value=4 Score=41.56 Aligned_cols=85 Identities=11% Similarity=0.057 Sum_probs=49.7
Q ss_pred cCcEEEeccCCCCCCCccc--cccCCCccEEeccCcccC-----CCChhhh----hCCCCCcEEEcccCCCCCCCc---h
Q 041736 266 TLNEVILTNNGLHSCLPEE--IGLLKNVTVFDVSYNKLM-----GELPDTI----AEMTSLQQLNVAHNMLSGTVP---D 331 (500)
Q Consensus 266 ~L~~L~Ls~n~l~~~~p~~--~~~l~~L~~L~Ls~n~l~-----~~~p~~l----~~l~~L~~L~L~~N~l~g~ip---~ 331 (500)
.+++|+.+.|++.|..-.. +..-+.++.+++.+..-. +..-..+ ....-+..+.++.|.+.-..- .
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 3788888888887654332 233456777777654331 1111111 112346677888887754332 2
Q ss_pred hhcCCCCCcEEEccCCcCc
Q 041736 332 SVCSLPNLRNFSFDYNFFT 350 (500)
Q Consensus 332 ~l~~l~~L~~L~Ls~N~l~ 350 (500)
.+..-+.+..||+++|...
T Consensus 435 ~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred hhccCcccccccccCCCcc
Confidence 3445567899999999764
No 88
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.16 E-value=0.21 Score=44.87 Aligned_cols=82 Identities=11% Similarity=0.131 Sum_probs=48.1
Q ss_pred CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCC-ccccc-cCCCccEEeccCc-ccCCCChhhhhCCCCCc
Q 041736 240 SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCL-PEEIG-LLKNVTVFDVSYN-KLMGELPDTIAEMTSLQ 316 (500)
Q Consensus 240 ~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~-p~~~~-~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~ 316 (500)
..++.++.++..|...--+.+..+.. ++.|.+.+|.--+.. -+-++ -..+|+.|+|++| +||..--..+..+++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~-i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRS-IKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccch-hhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 45777787777777655566666665 777777776533210 01111 2356777777755 56544445566666666
Q ss_pred EEEccc
Q 041736 317 QLNVAH 322 (500)
Q Consensus 317 ~L~L~~ 322 (500)
.|.|.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 666543
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.79 E-value=1.7 Score=25.27 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=7.8
Q ss_pred CCccEEeccCcccC
Q 041736 289 KNVTVFDVSYNKLM 302 (500)
Q Consensus 289 ~~L~~L~Ls~n~l~ 302 (500)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45555555555554
No 90
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=75.17 E-value=32 Score=37.28 Aligned_cols=6 Identities=17% Similarity=0.418 Sum_probs=2.2
Q ss_pred CcEEEc
Q 041736 315 LQQLNV 320 (500)
Q Consensus 315 L~~L~L 320 (500)
.+.++|
T Consensus 448 iqSi~l 453 (894)
T KOG0132|consen 448 IQSIIL 453 (894)
T ss_pred ceeEee
Confidence 333333
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=67.30 E-value=4.5 Score=23.81 Aligned_cols=14 Identities=57% Similarity=0.700 Sum_probs=8.9
Q ss_pred CCCCEEeCcCCcCC
Q 041736 170 KLLFELDLSNNRFA 183 (500)
Q Consensus 170 ~~L~~L~Ls~n~l~ 183 (500)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666665
No 92
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.65 E-value=4.6 Score=23.42 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=8.5
Q ss_pred CCcEEeccCCcCCCCCc
Q 041736 195 KLKFLDLRYNEFEGKIP 211 (500)
Q Consensus 195 ~L~~L~Ls~N~l~g~~p 211 (500)
+|++|++++|+++ .+|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 4555555555555 444
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.40 E-value=7.1 Score=40.67 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=26.2
Q ss_pred CcEEEeccCCCCCC--CccccccCCCccEEeccCc--ccCCCChhhhhC--CCCCcEEEcccCCCCC
Q 041736 267 LNEVILTNNGLHSC--LPEEIGLLKNVTVFDVSYN--KLMGELPDTIAE--MTSLQQLNVAHNMLSG 327 (500)
Q Consensus 267 L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~n--~l~~~~p~~l~~--l~~L~~L~L~~N~l~g 327 (500)
+..+.|++|++... +-.--...++|+.|+|++| .+.. -.++.+ ...|++|.|.+|.+..
T Consensus 220 i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 220 ILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred eeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 44555555555432 1111123355666666666 3221 112222 2345566666665543
No 94
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=51.40 E-value=7 Score=39.32 Aligned_cols=60 Identities=13% Similarity=0.038 Sum_probs=33.4
Q ss_pred CCCCEEeCcCCc-CCCcC-chhccCCCCCcEEeccCCcCCCCCc-hhhcC--CCCCeEEccCCCc
Q 041736 170 KLLFELDLSNNR-FAGKF-PYVVLGLPKLKFLDLRYNEFEGKIP-KALFD--KDLDAVFINNNRF 229 (500)
Q Consensus 170 ~~L~~L~Ls~n~-l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~~p-~~~~~--~~L~~L~l~~n~l 229 (500)
..+..+++.++. +++.- -..-..+..|++|+.+++...+... ..+.. .+|++|-+..++-
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~ 332 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ 332 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccch
Confidence 345666665653 44221 1122346789999998875432222 12222 6888888887763
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.53 E-value=17 Score=37.91 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=43.5
Q ss_pred ccCCCccEEeccCcccCC--CChhhhhCCCCCcEEEcccC--CCCCCCchhhcC--CCCCcEEEccCCcCccC
Q 041736 286 GLLKNVTVFDVSYNKLMG--ELPDTIAEMTSLQQLNVAHN--MLSGTVPDSVCS--LPNLRNFSFDYNFFTGE 352 (500)
Q Consensus 286 ~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~N--~l~g~ip~~l~~--l~~L~~L~Ls~N~l~g~ 352 (500)
.+...+..+.|++|++.. .+-..-...++|+.|+|++| .+.. -.++.. ...|++|-+.+|.+...
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccc
Confidence 355678889999998863 12222345689999999999 4432 122322 23578999999988654
No 96
>PRK15313 autotransport protein MisL; Provisional
Probab=38.92 E-value=99 Score=34.81 Aligned_cols=6 Identities=33% Similarity=0.235 Sum_probs=2.6
Q ss_pred HHHHHH
Q 041736 37 AEAAFI 42 (500)
Q Consensus 37 ~~~~~l 42 (500)
-|.+||
T Consensus 46 ~~~~~~ 51 (955)
T PRK15313 46 PELQAI 51 (955)
T ss_pred hhHhhh
Confidence 344443
No 97
>PRK09718 hypothetical protein; Validated
Probab=31.00 E-value=87 Score=32.48 Aligned_cols=13 Identities=0% Similarity=-0.199 Sum_probs=7.3
Q ss_pred CccEEeccCcccC
Q 041736 290 NVTVFDVSYNKLM 302 (500)
Q Consensus 290 ~L~~L~Ls~n~l~ 302 (500)
.|+..|++.+.+.
T Consensus 229 ~LkgVDFSdC~Le 241 (512)
T PRK09718 229 RISTGNFKDCITE 241 (512)
T ss_pred cCCCccccccccc
Confidence 4555566555554
No 98
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.48 E-value=71 Score=27.28 Aligned_cols=13 Identities=31% Similarity=0.266 Sum_probs=9.1
Q ss_pred ccCCHHHHHHHHH
Q 041736 32 GVFLEAEAAFIKQ 44 (500)
Q Consensus 32 ~~~~~~~~~~l~~ 44 (500)
...+.+|.+|+++
T Consensus 32 ~P~~~~~~qA~~~ 44 (161)
T COG5353 32 KPYHEAEEQAIDL 44 (161)
T ss_pred CccchhHHHHHHH
Confidence 3478888888644
No 99
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=26.61 E-value=96 Score=28.54 Aligned_cols=9 Identities=33% Similarity=0.501 Sum_probs=3.6
Q ss_pred eccCcccCC
Q 041736 295 DVSYNKLMG 303 (500)
Q Consensus 295 ~Ls~n~l~~ 303 (500)
||++++++|
T Consensus 262 dLencnlsG 270 (302)
T KOG1665|consen 262 DLENCNLSG 270 (302)
T ss_pred ccccCCCCC
Confidence 344444443
No 100
>PRK09718 hypothetical protein; Validated
Probab=24.47 E-value=1.3e+02 Score=31.35 Aligned_cols=13 Identities=0% Similarity=-0.130 Sum_probs=8.1
Q ss_pred CcEEEeccCCCCC
Q 041736 267 LNEVILTNNGLHS 279 (500)
Q Consensus 267 L~~L~Ls~n~l~~ 279 (500)
|+.+|++.|.+.+
T Consensus 230 LkgVDFSdC~Le~ 242 (512)
T PRK09718 230 ISTGNFKDCITEQ 242 (512)
T ss_pred CCCcccccccccc
Confidence 6666666666654
No 101
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.07 E-value=53 Score=41.40 Aligned_cols=32 Identities=28% Similarity=0.329 Sum_probs=27.6
Q ss_pred EcCCCCCCccCCccccCCCCCCEEeCcCCcCC
Q 041736 152 HVNTNRFCGTLPRSFNKLKLLFELDLSNNRFA 183 (500)
Q Consensus 152 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 183 (500)
||++|+|+..-...|..|.+|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 58899999666678889999999999999876
No 102
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=23.50 E-value=4.2e+02 Score=29.11 Aligned_cols=16 Identities=25% Similarity=0.636 Sum_probs=9.8
Q ss_pred CCcccchhhHHHHHHH
Q 041736 66 SFKFENSRIRSAYIAL 81 (500)
Q Consensus 66 ~~~~~~~~~~~~~~~l 81 (500)
||+|.|+++.+-...|
T Consensus 405 CINfVNEKLQQIFIeL 420 (1106)
T KOG0162|consen 405 CINFVNEKLQQIFIEL 420 (1106)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666655443
No 103
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=22.78 E-value=59 Score=18.38 Aligned_cols=10 Identities=60% Similarity=0.497 Sum_probs=5.1
Q ss_pred CCCEEeCcCC
Q 041736 171 LLFELDLSNN 180 (500)
Q Consensus 171 ~L~~L~Ls~n 180 (500)
+|++|+|+++
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 4555555554
No 104
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.00 E-value=71 Score=40.35 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=27.1
Q ss_pred eccCcccCCCChhhhhCCCCCcEEEcccCCCCC
Q 041736 295 DVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSG 327 (500)
Q Consensus 295 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g 327 (500)
||++|+|+..-...|..+.+|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 688999996556677888999999999998763
Done!