Query 041736
Match_columns 500
No_of_seqs 584 out of 5044
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 17:18:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041736.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041736hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 4.8E-40 1.6E-44 323.9 19.4 288 73-368 3-302 (313)
2 4eco_A Uncharacterized protein 100.0 1.3E-36 4.4E-41 327.7 17.7 288 73-372 27-448 (636)
3 3rgz_A Protein brassinosteroid 100.0 6.1E-35 2.1E-39 321.4 23.1 272 121-393 393-743 (768)
4 3rgz_A Protein brassinosteroid 100.0 3.5E-35 1.2E-39 323.4 18.7 289 74-374 10-360 (768)
5 4ecn_A Leucine-rich repeat pro 100.0 7E-35 2.4E-39 320.7 19.9 288 73-372 266-688 (876)
6 4fcg_A Uncharacterized protein 100.0 3.7E-34 1.3E-38 283.5 16.2 269 76-350 27-314 (328)
7 1ogq_A PGIP-2, polygalacturona 100.0 1.4E-33 4.8E-38 277.6 12.6 232 118-352 72-307 (313)
8 3v47_A TOLL-like receptor 5B a 100.0 2.2E-30 7.4E-35 268.0 24.8 131 242-373 277-411 (455)
9 3v47_A TOLL-like receptor 5B a 100.0 1.9E-30 6.6E-35 268.4 24.0 253 122-374 30-388 (455)
10 4eco_A Uncharacterized protein 100.0 2.6E-31 9.1E-36 286.2 17.0 233 134-372 195-472 (636)
11 2id5_A Lingo-1, leucine rich r 100.0 6.9E-29 2.4E-33 258.5 21.6 252 122-374 32-313 (477)
12 4ecn_A Leucine-rich repeat pro 100.0 1.8E-29 6.1E-34 277.8 17.3 227 138-371 440-711 (876)
13 1xku_A Decorin; proteoglycan, 100.0 6.1E-28 2.1E-32 239.1 25.5 261 104-372 30-308 (330)
14 2z66_A Variable lymphocyte rec 100.0 7.5E-29 2.6E-33 243.0 18.4 246 105-352 7-263 (306)
15 2ft3_A Biglycan; proteoglycan, 100.0 3.6E-28 1.2E-32 241.0 23.3 259 105-371 33-308 (332)
16 2id5_A Lingo-1, leucine rich r 100.0 3.3E-28 1.1E-32 253.4 23.1 243 126-373 15-288 (477)
17 3o6n_A APL1; leucine-rich repe 100.0 3.8E-28 1.3E-32 246.2 20.4 248 121-373 44-334 (390)
18 2z80_A TOLL-like receptor 2, v 100.0 1.9E-28 6.6E-33 245.1 17.3 270 101-373 26-317 (353)
19 3oja_B Anopheles plasmodium-re 100.0 5.2E-28 1.8E-32 258.8 21.7 248 122-373 51-340 (597)
20 4fcg_A Uncharacterized protein 100.0 5.9E-28 2E-32 239.0 20.3 223 144-372 79-316 (328)
21 3t6q_A CD180 antigen; protein- 100.0 5.3E-28 1.8E-32 259.3 21.5 251 121-374 277-540 (606)
22 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-27 4E-32 251.9 20.3 246 120-371 43-435 (520)
23 3o6n_A APL1; leucine-rich repe 100.0 2.3E-27 7.9E-32 240.5 21.5 245 122-371 69-353 (390)
24 2z7x_B TOLL-like receptor 1, v 100.0 2E-27 6.8E-32 250.1 21.2 107 122-231 21-129 (520)
25 2z81_A CD282 antigen, TOLL-lik 100.0 9.7E-28 3.3E-32 254.1 18.4 174 105-279 4-210 (549)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.1E-27 7.3E-32 252.4 21.0 249 119-373 73-466 (562)
27 3t6q_A CD180 antigen; protein- 100.0 4.1E-27 1.4E-31 252.4 23.4 249 123-373 255-516 (606)
28 3oja_B Anopheles plasmodium-re 100.0 2.4E-27 8.1E-32 253.7 20.4 246 121-371 74-359 (597)
29 3zyi_A Leucine-rich repeat-con 100.0 4E-27 1.4E-31 243.5 21.2 227 122-352 75-305 (452)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.5E-27 1.5E-31 249.8 21.8 105 123-230 53-159 (562)
31 1xku_A Decorin; proteoglycan, 99.9 1.3E-26 4.4E-31 229.5 23.5 244 118-368 72-330 (330)
32 3vq2_A TLR4, TOLL-like recepto 99.9 7E-27 2.4E-31 250.5 22.5 92 118-209 76-168 (606)
33 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-26 3.7E-31 230.4 21.4 244 118-368 74-331 (332)
34 3j0a_A TOLL-like receptor 5; m 99.9 1.2E-26 4.2E-31 257.8 23.5 254 118-371 69-376 (844)
35 2z66_A Variable lymphocyte rec 99.9 5.6E-27 1.9E-31 229.6 18.3 244 125-373 10-264 (306)
36 3zyj_A Leucine-rich repeat-con 99.9 1.4E-26 4.9E-31 238.5 21.6 226 122-351 64-293 (440)
37 3j0a_A TOLL-like receptor 5; m 99.9 1.3E-26 4.6E-31 257.5 21.9 253 122-374 24-355 (844)
38 1ozn_A Reticulon 4 receptor; N 99.9 3E-26 1E-30 222.1 21.4 224 126-353 15-241 (285)
39 1ziw_A TOLL-like receptor 3; i 99.9 4E-26 1.4E-30 248.0 24.7 251 122-373 25-345 (680)
40 1wwl_A Monocyte differentiatio 99.9 1.8E-28 6.3E-33 241.0 4.8 242 121-372 42-311 (312)
41 1ziw_A TOLL-like receptor 3; i 99.9 2E-26 7E-31 250.3 21.4 252 121-372 72-368 (680)
42 2z81_A CD282 antigen, TOLL-lik 99.9 1.7E-26 5.7E-31 244.6 20.0 109 262-372 332-446 (549)
43 3zyi_A Leucine-rich repeat-con 99.9 5.7E-26 1.9E-30 234.8 22.4 240 126-372 58-305 (452)
44 3zyj_A Leucine-rich repeat-con 99.9 8.1E-26 2.8E-30 232.9 22.2 240 125-371 46-293 (440)
45 1ozn_A Reticulon 4 receptor; N 99.9 1.8E-26 6.2E-31 223.6 16.4 233 121-355 31-266 (285)
46 2o6q_A Variable lymphocyte rec 99.9 1.3E-25 4.3E-30 216.0 21.4 220 102-353 2-221 (270)
47 4g8a_A TOLL-like receptor 4; l 99.9 1.3E-25 4.5E-30 241.3 23.0 131 122-252 52-185 (635)
48 2z63_A TOLL-like receptor 4, v 99.9 1.5E-25 5.1E-30 238.3 22.5 131 240-372 373-509 (570)
49 3vq2_A TLR4, TOLL-like recepto 99.9 3.5E-26 1.2E-30 245.1 17.3 246 121-371 284-559 (606)
50 1wwl_A Monocyte differentiatio 99.9 5.3E-27 1.8E-31 230.5 7.9 222 124-352 65-311 (312)
51 4g8a_A TOLL-like receptor 4; l 99.9 6.5E-25 2.2E-29 235.9 23.7 113 118-230 72-186 (635)
52 4fmz_A Internalin; leucine ric 99.9 1.1E-24 3.8E-29 217.0 23.4 241 118-374 84-328 (347)
53 3o53_A Protein LRIM1, AGAP0063 99.9 4.4E-26 1.5E-30 224.5 12.8 214 123-350 35-250 (317)
54 3oja_A Leucine-rich immune mol 99.9 1.5E-25 5.3E-30 233.4 15.6 216 121-350 33-250 (487)
55 3o53_A Protein LRIM1, AGAP0063 99.9 1.7E-25 5.9E-30 220.2 14.4 237 122-370 10-250 (317)
56 4fmz_A Internalin; leucine ric 99.9 8E-24 2.7E-28 210.8 24.8 238 120-373 64-303 (347)
57 3bz5_A Internalin-J, INLJ; leu 99.9 6.8E-24 2.3E-28 219.2 25.0 225 121-369 41-266 (457)
58 2z80_A TOLL-like receptor 2, v 99.9 6.3E-25 2.1E-29 219.5 16.3 234 118-354 72-318 (353)
59 2z62_A TOLL-like receptor 4, v 99.9 2.7E-24 9.2E-29 207.3 19.3 209 122-354 28-241 (276)
60 2z63_A TOLL-like receptor 4, v 99.9 2.5E-24 8.7E-29 228.8 20.9 245 122-372 28-362 (570)
61 3oja_A Leucine-rich immune mol 99.9 3.5E-25 1.2E-29 230.7 13.8 215 144-370 32-250 (487)
62 1o6v_A Internalin A; bacterial 99.9 1E-23 3.5E-28 218.8 24.0 80 122-207 68-147 (466)
63 1o6v_A Internalin A; bacterial 99.9 9.6E-24 3.3E-28 219.0 23.7 239 118-372 86-346 (466)
64 3bz5_A Internalin-J, INLJ; leu 99.9 5.8E-24 2E-28 219.7 21.5 187 120-328 62-248 (457)
65 1jl5_A Outer protein YOPM; leu 99.9 1.1E-24 3.7E-29 225.0 13.8 229 122-372 11-272 (454)
66 2z62_A TOLL-like receptor 4, v 99.9 8.5E-24 2.9E-28 203.8 18.3 188 118-329 48-240 (276)
67 1p9a_G Platelet glycoprotein I 99.9 3.2E-23 1.1E-27 201.3 20.8 202 121-352 9-210 (290)
68 3rfs_A Internalin B, repeat mo 99.9 2.9E-24 9.8E-29 206.7 11.8 199 122-355 41-240 (272)
69 3m19_A Variable lymphocyte rec 99.9 2.7E-23 9.1E-28 197.5 17.3 192 103-352 3-194 (251)
70 3rfs_A Internalin B, repeat mo 99.9 2.1E-23 7.2E-28 200.7 16.6 188 119-338 60-247 (272)
71 1jl5_A Outer protein YOPM; leu 99.9 1.4E-22 4.7E-27 209.2 23.1 217 123-371 132-351 (454)
72 3goz_A Leucine-rich repeat-con 99.9 5.4E-24 1.8E-28 213.5 9.8 247 126-372 2-299 (362)
73 2ca6_A RAN GTPase-activating p 99.9 1.6E-24 5.6E-29 219.2 4.0 232 122-354 32-320 (386)
74 4glp_A Monocyte differentiatio 99.9 2.8E-23 9.4E-28 203.8 12.0 223 122-351 64-308 (310)
75 1p9a_G Platelet glycoprotein I 99.9 3.3E-22 1.1E-26 194.1 19.4 180 121-327 30-209 (290)
76 2ast_B S-phase kinase-associat 99.9 4.1E-24 1.4E-28 211.9 5.4 259 104-375 36-311 (336)
77 3goz_A Leucine-rich repeat-con 99.9 1.6E-23 5.4E-28 210.1 8.7 230 122-352 22-299 (362)
78 3cvr_A Invasion plasmid antige 99.9 2.3E-22 7.9E-27 211.8 16.0 198 106-337 49-254 (571)
79 2o6q_A Variable lymphocyte rec 99.9 3E-21 1E-25 185.3 22.3 201 146-372 16-220 (270)
80 3g06_A SSPH2 (leucine-rich rep 99.9 1.8E-21 6.1E-26 207.4 22.7 214 122-370 61-274 (622)
81 1h6u_A Internalin H; cell adhe 99.9 1.2E-21 4E-26 191.9 18.9 193 121-352 40-232 (308)
82 4glp_A Monocyte differentiatio 99.9 2.1E-22 7E-27 197.6 13.5 222 145-371 63-308 (310)
83 2ca6_A RAN GTPase-activating p 99.9 1.3E-23 4.3E-28 212.7 4.5 235 138-373 24-319 (386)
84 2xwt_C Thyrotropin receptor; s 99.9 6.4E-22 2.2E-26 186.4 15.0 196 123-347 32-236 (239)
85 1z7x_W Ribonuclease inhibitor; 99.9 1.7E-23 5.7E-28 216.6 -0.6 249 122-371 113-412 (461)
86 1h6u_A Internalin H; cell adhe 99.9 6.7E-21 2.3E-25 186.6 17.5 172 119-327 60-231 (308)
87 2ast_B S-phase kinase-associat 99.9 1.5E-22 5E-27 200.6 5.4 231 122-357 70-313 (336)
88 1z7x_W Ribonuclease inhibitor; 99.9 2.4E-23 8.3E-28 215.4 -1.0 248 123-371 86-384 (461)
89 3g06_A SSPH2 (leucine-rich rep 99.9 1.7E-20 5.8E-25 199.9 20.8 218 120-373 79-300 (622)
90 2xwt_C Thyrotropin receptor; s 99.9 5.9E-21 2E-25 179.8 15.4 196 146-367 31-236 (239)
91 3cvr_A Invasion plasmid antige 99.8 9.1E-21 3.1E-25 199.6 17.2 183 146-355 59-248 (571)
92 4ay9_X Follicle-stimulating ho 99.8 1.8E-20 6.1E-25 186.9 16.5 237 105-348 9-257 (350)
93 2o6s_A Variable lymphocyte rec 99.8 2.9E-20 1E-24 171.2 13.9 190 105-329 7-201 (208)
94 3m19_A Variable lymphocyte rec 99.8 1.3E-19 4.6E-24 171.9 18.6 176 171-373 15-195 (251)
95 4ay9_X Follicle-stimulating ho 99.8 1.5E-19 5.2E-24 180.2 15.2 235 125-367 12-256 (350)
96 2o6s_A Variable lymphocyte rec 99.8 2.9E-19 9.7E-24 164.5 14.9 174 125-355 10-183 (208)
97 1h6t_A Internalin B; cell adhe 99.8 3.4E-19 1.2E-23 172.9 15.6 81 121-207 45-125 (291)
98 3e6j_A Variable lymphocyte rec 99.8 7.9E-19 2.7E-23 164.2 16.3 164 97-328 11-174 (229)
99 1h6t_A Internalin B; cell adhe 99.8 1E-18 3.6E-23 169.5 15.5 189 124-351 26-214 (291)
100 1m9s_A Internalin B; cell inva 99.8 2.2E-19 7.4E-24 191.0 10.6 103 121-230 42-144 (605)
101 4b8c_D Glucose-repressible alc 99.8 3.9E-20 1.3E-24 201.5 4.4 253 78-350 134-404 (727)
102 1dce_A Protein (RAB geranylger 99.8 9.5E-22 3.3E-26 207.9 -8.7 191 143-355 346-551 (567)
103 1m9s_A Internalin B; cell inva 99.8 2E-18 7E-23 183.5 15.5 190 124-328 23-212 (605)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 3.1E-18 1.1E-22 159.1 14.6 156 173-353 14-169 (220)
105 2xot_A Amphoterin-induced prot 99.8 2.5E-18 8.7E-23 172.1 14.0 175 126-326 22-202 (361)
106 2v9t_B SLIT homolog 2 protein 99.8 5.8E-18 2E-22 157.2 14.9 153 173-352 14-167 (220)
107 1xeu_A Internalin C; cellular 99.8 1E-18 3.6E-23 166.9 9.4 168 121-326 18-185 (263)
108 2v9t_B SLIT homolog 2 protein 99.8 9.5E-18 3.3E-22 155.8 15.1 151 126-326 15-165 (220)
109 3e6j_A Variable lymphocyte rec 99.7 1.9E-17 6.7E-22 154.7 16.3 155 172-353 21-175 (229)
110 4ezg_A Putative uncharacterize 99.7 6E-18 2.1E-22 154.3 11.4 153 143-350 41-194 (197)
111 1dce_A Protein (RAB geranylger 99.7 4.8E-21 1.6E-25 202.5 -11.0 203 120-344 347-567 (567)
112 2v70_A SLIT-2, SLIT homolog 2 99.7 1.6E-17 5.3E-22 154.3 13.8 156 149-330 14-170 (220)
113 2xot_A Amphoterin-induced prot 99.7 1.2E-17 4E-22 167.2 12.8 175 105-303 18-203 (361)
114 1xeu_A Internalin C; cellular 99.7 6.1E-18 2.1E-22 161.6 8.9 172 144-353 17-188 (263)
115 3ogk_B Coronatine-insensitive 99.7 8.1E-19 2.8E-23 187.2 1.3 133 240-373 378-529 (592)
116 4b8c_D Glucose-repressible alc 99.7 8.2E-18 2.8E-22 183.1 7.3 193 124-326 193-404 (727)
117 3ogk_B Coronatine-insensitive 99.7 2E-18 6.7E-23 184.2 0.2 247 122-370 164-501 (592)
118 4ezg_A Putative uncharacterize 99.7 1.2E-16 4.1E-21 145.6 11.9 152 121-303 43-195 (197)
119 1w8a_A SLIT protein; signaling 99.7 1.4E-16 4.8E-21 144.6 11.9 113 241-354 30-143 (192)
120 2ell_A Acidic leucine-rich nuc 99.6 1.4E-15 4.7E-20 134.7 12.5 132 146-326 24-160 (168)
121 1w8a_A SLIT protein; signaling 99.6 1.3E-15 4.3E-20 138.2 11.6 133 173-330 11-143 (192)
122 2wfh_A SLIT homolog 2 protein 99.6 4.1E-15 1.4E-19 135.0 13.8 128 221-352 14-141 (193)
123 2je0_A Acidic leucine-rich nuc 99.6 1.4E-15 4.8E-20 131.8 9.1 82 123-206 18-100 (149)
124 2o6r_A Variable lymphocyte rec 99.6 7.5E-15 2.6E-19 131.2 14.1 114 240-354 28-141 (177)
125 2ell_A Acidic leucine-rich nuc 99.6 3.1E-15 1.1E-19 132.4 11.1 107 241-350 50-160 (168)
126 2je0_A Acidic leucine-rich nuc 99.6 2.7E-15 9.1E-20 130.1 8.2 101 242-345 44-148 (149)
127 2o6r_A Variable lymphocyte rec 99.6 2.3E-14 7.8E-19 128.0 12.4 103 105-207 7-113 (177)
128 2p1m_B Transport inhibitor res 99.6 2.2E-16 7.6E-21 168.3 -1.1 199 168-369 287-518 (594)
129 1ds9_A Outer arm dynein; leuci 99.5 6.6E-17 2.3E-21 147.5 -4.9 62 144-207 16-83 (198)
130 2p1m_B Transport inhibitor res 99.5 1.3E-15 4.4E-20 162.4 1.2 104 267-371 374-495 (594)
131 3sb4_A Hypothetical leucine ri 99.5 2.7E-14 9.3E-19 140.8 10.1 189 169-363 100-327 (329)
132 1ds9_A Outer arm dynein; leuci 99.5 1.4E-16 4.8E-21 145.3 -6.1 81 124-207 20-106 (198)
133 2wfh_A SLIT homolog 2 protein 99.5 8.5E-14 2.9E-18 126.2 12.3 128 173-327 13-140 (193)
134 1a9n_A U2A', U2A'; complex (nu 99.5 9.1E-14 3.1E-18 124.0 10.4 57 267-325 90-152 (176)
135 1a9n_A U2A', U2A'; complex (nu 99.5 3.2E-14 1.1E-18 127.0 7.4 133 190-350 15-153 (176)
136 3g39_A Variable lymphocyte rec 99.5 2.2E-13 7.5E-18 120.9 11.1 109 242-354 11-119 (170)
137 2r9u_A Variable lymphocyte rec 99.4 5.1E-13 1.7E-17 118.9 11.2 108 242-353 14-121 (174)
138 3sb4_A Hypothetical leucine ri 99.4 2.8E-13 9.5E-18 133.5 9.6 218 122-344 49-328 (329)
139 3g39_A Variable lymphocyte rec 99.4 1.4E-12 4.9E-17 115.5 11.3 107 220-329 12-118 (170)
140 2r9u_A Variable lymphocyte rec 99.4 3E-12 1E-16 113.9 11.1 106 220-328 15-120 (174)
141 4fdw_A Leucine rich hypothetic 99.4 2.5E-11 8.5E-16 122.6 18.7 193 147-349 158-357 (401)
142 3un9_A NLR family member X1; l 99.3 5.9E-14 2E-18 140.5 -2.9 164 145-328 71-254 (372)
143 2ifg_A High affinity nerve gro 99.2 1.8E-11 6.2E-16 121.3 10.1 104 244-351 12-117 (347)
144 3un9_A NLR family member X1; l 99.2 4.7E-13 1.6E-17 134.0 -1.8 162 169-352 71-254 (372)
145 4fdw_A Leucine rich hypothetic 99.2 1.3E-10 4.4E-15 117.4 16.0 217 122-348 157-381 (401)
146 2ifg_A High affinity nerve gro 99.2 3.4E-11 1.1E-15 119.4 11.1 101 128-231 14-117 (347)
147 2ra8_A Uncharacterized protein 98.9 7.1E-10 2.4E-14 110.1 6.4 203 122-348 107-341 (362)
148 2ra8_A Uncharacterized protein 98.9 2.9E-09 9.9E-14 105.7 7.5 197 146-368 107-341 (362)
149 1io0_A Tropomodulin; LRR prote 98.5 3.7E-08 1.3E-12 88.1 3.2 87 122-208 36-137 (185)
150 1io0_A Tropomodulin; LRR prote 98.5 2.6E-08 8.8E-13 89.2 1.7 84 267-350 67-164 (185)
151 4fs7_A Uncharacterized protein 98.4 2.3E-06 8E-11 85.9 14.9 214 141-366 157-375 (394)
152 4gt6_A Cell surface protein; l 98.4 3.4E-06 1.2E-10 84.7 15.8 104 259-367 260-367 (394)
153 4fs7_A Uncharacterized protein 98.4 2.4E-06 8.1E-11 85.9 14.4 217 118-347 158-376 (394)
154 3rw6_A Nuclear RNA export fact 98.4 1E-07 3.4E-12 90.0 3.1 80 261-343 167-257 (267)
155 3rw6_A Nuclear RNA export fact 98.3 6.5E-07 2.2E-11 84.4 5.1 95 127-223 148-257 (267)
156 4gt6_A Cell surface protein; l 98.2 2.8E-05 9.7E-10 77.9 17.2 77 124-202 66-145 (394)
157 4h09_A Hypothetical leucine ri 98.0 0.00034 1.2E-08 69.4 19.4 87 258-347 234-320 (379)
158 3e4g_A ATP synthase subunit S, 97.9 3.5E-06 1.2E-10 73.8 2.8 84 122-205 61-150 (176)
159 3e4g_A ATP synthase subunit S, 97.8 8.4E-06 2.9E-10 71.4 3.0 81 267-347 63-149 (176)
160 1pgv_A TMD-1, tropomodulin TMD 97.6 2.1E-05 7.2E-10 70.2 3.1 82 267-348 72-168 (197)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 2.6E-05 8.9E-10 69.6 3.7 83 122-204 41-136 (197)
162 4h09_A Hypothetical leucine ri 97.6 0.0019 6.5E-08 64.0 16.5 105 239-347 239-343 (379)
163 3rfe_A Platelet glycoprotein I 96.5 0.0049 1.7E-07 51.0 6.5 55 126-182 12-67 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.0054 1.8E-07 50.8 5.6 56 269-326 12-68 (130)
165 2lz0_A Uncharacterized protein 34.2 51 0.0017 25.0 4.5 38 140-178 14-51 (100)
166 2lz0_A Uncharacterized protein 33.5 50 0.0017 25.1 4.4 48 156-204 6-53 (100)
167 2w7z_A EFSQNR, pentapeptide re 27.0 1.2E+02 0.0042 26.2 6.5 13 314-326 151-163 (214)
168 2w7z_A EFSQNR, pentapeptide re 26.1 1E+02 0.0035 26.7 5.8 94 267-372 92-185 (214)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.8e-40 Score=323.88 Aligned_cols=288 Identities=25% Similarity=0.397 Sum_probs=256.9
Q ss_pred hhHHHHHHHHHHHHhccCCCCCCCCCCC-CCCCCC--cCceecCCCCCCCCcCcEEEEECCCCCCcc--cCchhhcCCCC
Q 041736 73 RIRSAYIALQAWKKAIISDPWNLTSNWV-GCYVCN--YTGVFCAQALDNHSIRTVAGIDLNHGDIAS--YLPEELGLLAD 147 (500)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~-~~~~c~--~~gv~c~~~~~~~~~~~l~~L~L~~n~l~~--~~p~~l~~l~~ 147 (500)
|..++..||++||..+ .++. ...+|. +.+||. |.||.|+.. ....+|+.|+|++|.+.+ .++..|+++++
T Consensus 3 c~~~~~~aL~~~k~~~-~~~~-~l~~W~~~~~~C~~~w~gv~C~~~---~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~ 77 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDL-GNPT-TLSSWLPTTDCCNRTWLGVLCDTD---TQTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77 (313)
T ss_dssp SCHHHHHHHHHHHHHT-TCCG-GGTTCCTTSCTTTTCSTTEEECCS---SSCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred CCHHHHHHHHHHHHhc-CCcc-cccCCCCCCCCCcCCCcceEeCCC---CCCceEEEEECCCCCccCCcccChhHhCCCC
Confidence 3456777888888876 3554 567885 468898 999999642 112589999999999999 89999999999
Q ss_pred CCEEEcCC-CCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcC-CCCCeEEcc
Q 041736 148 IALFHVNT-NRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFIN 225 (500)
Q Consensus 148 L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~ 225 (500)
|++|+|++ |.+++.+|..|+++++|++|+|++|++++.+|..+.++++|++|+|++|++++.+|..+.. ++|++|+++
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 99999995 9999999999999999999999999999999999999999999999999999989887765 899999999
Q ss_pred CCCccCCCCCccCC-C-CcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCC
Q 041736 226 NNRFSFELPDNIGN-S-PVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMG 303 (500)
Q Consensus 226 ~n~l~~~~p~~~~~-~-~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 303 (500)
+|++++.+|..++. . +|++|++++|.+++.++..+..+. |++|++++|.+++.++..+..+++|++|+|++|++++
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC--CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc--ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence 99999999988876 3 799999999999999999999985 9999999999999999999999999999999999997
Q ss_pred CChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCCc---cCCEEEcCCCC
Q 041736 304 ELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL---DLQGFDDKRNC 368 (500)
Q Consensus 304 ~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~~---~L~~l~l~~N~ 368 (500)
.++. +..+++|++|+|++|.+++.+|..+..+++|++|+|++|+++|.+|... .|+.+++++|.
T Consensus 236 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred ecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 7765 8889999999999999999999999999999999999999999998753 46667777664
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.3e-36 Score=327.69 Aligned_cols=288 Identities=19% Similarity=0.324 Sum_probs=239.1
Q ss_pred hhHHHHHHHHHHHHhccCCCCCCCC-------CCC-CCCCCCc---CceecCCCCCCCCcCcEEEEECCCCCCcccCchh
Q 041736 73 RIRSAYIALQAWKKAIISDPWNLTS-------NWV-GCYVCNY---TGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEE 141 (500)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~~~~~-------~w~-~~~~c~~---~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~ 141 (500)
....|+.||.+++.++.++.|...+ +|. +.++|.| .||+|+.. .+|+.|+|+++++.|.+|.+
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~------~~V~~L~L~~~~l~g~lp~~ 100 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN------GRVTGLSLEGFGASGRVPDA 100 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT------CCEEEEECTTSCCEEEECGG
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC------CCEEEEEecCcccCCcCChH
Confidence 3445666777776666555565444 796 5689999 99999642 68999999999999999999
Q ss_pred hcCCCCCCEEEcCCCC----------------------------------------------------------------
Q 041736 142 LGLLADIALFHVNTNR---------------------------------------------------------------- 157 (500)
Q Consensus 142 l~~l~~L~~L~L~~n~---------------------------------------------------------------- 157 (500)
|++|++|++|+|++|.
T Consensus 101 l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 180 (636)
T 4eco_A 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180 (636)
T ss_dssp GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCC
T ss_pred HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccc
Confidence 9999999999999884
Q ss_pred --------------CCccCCccccCCCCCCEEeCcCCcCCCc-----------------Cchhcc--CCCCCcEEeccCC
Q 041736 158 --------------FCGTLPRSFNKLKLLFELDLSNNRFAGK-----------------FPYVVL--GLPKLKFLDLRYN 204 (500)
Q Consensus 158 --------------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L~~L~Ls~N 204 (500)
++| +|..|+++++|++|+|++|++++. +|..+. ++++|++|+|++|
T Consensus 181 ~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n 259 (636)
T 4eco_A 181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259 (636)
T ss_dssp CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC
T ss_pred cchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC
Confidence 334 788899999999999999999985 899988 9999999999999
Q ss_pred cCCCCCchhhcC-CCCCeEEccCCC-ccC-CCCCccCC-------CCcceEEeccccccccCch--hhhcccccCcEEEe
Q 041736 205 EFEGKIPKALFD-KDLDAVFINNNR-FSF-ELPDNIGN-------SPVSVLVLANNKFHGCLPL--SFGNMSRTLNEVIL 272 (500)
Q Consensus 205 ~l~g~~p~~~~~-~~L~~L~l~~n~-l~~-~~p~~~~~-------~~L~~L~l~~n~l~~~~p~--~l~~l~~~L~~L~L 272 (500)
++.|.+|..+.. ++|++|++++|+ ++| .+|..++. .+|++|++++|.++ .+|. .++++.+ |++|++
T Consensus 260 ~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~-L~~L~L 337 (636)
T 4eco_A 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKK-LGMLEC 337 (636)
T ss_dssp TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTT-CCEEEC
T ss_pred cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCC-CCEEeC
Confidence 999999988776 799999999998 888 78877765 68999999999998 7888 8999887 999999
Q ss_pred ccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCC-CcEEEcccCCCCCCCchhhcCCC--CCcEEEccCCcC
Q 041736 273 TNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTS-LQQLNVAHNMLSGTVPDSVCSLP--NLRNFSFDYNFF 349 (500)
Q Consensus 273 s~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~L~~N~l~g~ip~~l~~l~--~L~~L~Ls~N~l 349 (500)
++|.++|.+| .++.+++|++|+|++|+++ .+|..+..+++ |++|+|++|.++ .+|..+..+. +|++|++++|.+
T Consensus 338 ~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 338 LYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp CSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred cCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcC
Confidence 9999998888 8888888888899888888 78888888888 888888888888 7777766654 788888888888
Q ss_pred ccCCCC-----------CccCCEEEcCCCCCCCC
Q 041736 350 TGESPV-----------CLDLQGFDDKRNCLRDK 372 (500)
Q Consensus 350 ~g~~p~-----------~~~L~~l~l~~N~l~~~ 372 (500)
++.+|. ..+|+.|++++|.+...
T Consensus 415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l 448 (636)
T 4eco_A 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF 448 (636)
T ss_dssp TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC
T ss_pred CCcchhhhcccccccccCCCCCEEECcCCccCcC
Confidence 876653 22567777777777743
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.1e-35 Score=321.44 Aligned_cols=272 Identities=28% Similarity=0.453 Sum_probs=242.7
Q ss_pred cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD 200 (500)
Q Consensus 121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 200 (500)
+.+|+.|+|++|.+++.+|..|+++++|++|+|++|.+++.+|..|.++++|++|+|++|++++.+|..+..+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 46788999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCC
Q 041736 201 LRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLH 278 (500)
Q Consensus 201 Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~ 278 (500)
|++|+++|.+|..+.. ++|++|++++|++++.+|..++. .+|++|++++|.+++.+|..++.+.+ |++|++++|.++
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFN 551 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT-CCEEECCSSEEE
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCC-CCEEECCCCccC
Confidence 9999999988887765 89999999999999999988765 78999999999999999999999987 999999999988
Q ss_pred CCCcccc----------------------------------------------------------------------ccC
Q 041736 279 SCLPEEI----------------------------------------------------------------------GLL 288 (500)
Q Consensus 279 ~~~p~~~----------------------------------------------------------------------~~l 288 (500)
|.+|..+ +.+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 7776543 335
Q ss_pred CCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCCc----cCCEEEc
Q 041736 289 KNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL----DLQGFDD 364 (500)
Q Consensus 289 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~~----~L~~l~l 364 (500)
++|++|||++|+++|.+|..++.+++|+.|+|++|.++|.+|..++++++|++|||++|+++|.+|..+ .|+.|++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 779999999999999999999999999999999999999999999999999999999999999999743 6999999
Q ss_pred CCCCCCCCCCCCC---hhhhhhhcccccccCc
Q 041736 365 KRNCLRDKPRQRS---TLQCRMFLSRLVYCNT 393 (500)
Q Consensus 365 ~~N~l~~~~~~~~---~~~~~~~~~~~~~c~~ 393 (500)
++|.++|.++... .+....+.+++..|+.
T Consensus 712 s~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp CSSEEEEECCSSSSGGGSCGGGGCSCTEEEST
T ss_pred cCCcccccCCCchhhccCCHHHhcCCchhcCC
Confidence 9999999887543 3344567777777764
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.5e-35 Score=323.37 Aligned_cols=289 Identities=23% Similarity=0.305 Sum_probs=200.4
Q ss_pred hHHHHHHHHHHHHhccCCCCCCCCCCC-CCCCCCcCceecCCCCCCCCcCcEEEEECCCCCCccc---Cc----------
Q 041736 74 IRSAYIALQAWKKAIISDPWNLTSNWV-GCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASY---LP---------- 139 (500)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~~~~~~w~-~~~~c~~~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~---~p---------- 139 (500)
...++.||++||+.+. |+. .+++|. +.+||+|+||+|+. .+|+.|||+++.+.|. ++
T Consensus 10 ~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~~-------~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 10 LYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCRD-------DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp HHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEET-------TEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred CHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEECC-------CcEEEEECCCCCcCCccCccChhHhccCccc
Confidence 3456667777777664 666 778895 67899999999962 5788888888877765 33
Q ss_pred -------------hhhcCCCCCCEEEcCCCCCCccCCc--cccCCCCCCEEeCcCCcCCCcCchhc-cCCCCCcEEeccC
Q 041736 140 -------------EELGLLADIALFHVNTNRFCGTLPR--SFNKLKLLFELDLSNNRFAGKFPYVV-LGLPKLKFLDLRY 203 (500)
Q Consensus 140 -------------~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~ 203 (500)
..|+.+++|++|+|++|.++|.++. .++++++|++|+|++|.+.+.++..+ .++++|++|+|++
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence 3566667777777777777777776 77777777777777777776666544 5666666666666
Q ss_pred CcCCCCCchh---h-----------------------cCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCc
Q 041736 204 NEFEGKIPKA---L-----------------------FDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLP 257 (500)
Q Consensus 204 N~l~g~~p~~---~-----------------------~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p 257 (500)
|++++..+.. + ...+|++|++++|++++.++..-...+|++|++++|.+++.++
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 240 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS 240 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHH
T ss_pred CccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCccc
Confidence 6666554433 1 1145555666666665555552223556666666666666666
Q ss_pred hhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCC-CCCcEEEcccCCCCCCCchhhcCC
Q 041736 258 LSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEM-TSLQQLNVAHNMLSGTVPDSVCSL 336 (500)
Q Consensus 258 ~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~L~~N~l~g~ip~~l~~l 336 (500)
..++.+.+ |++|++++|.+.+.++.. .+++|++|+|++|+++|.+|..+... ++|++|+|++|.+++.+|..+.++
T Consensus 241 ~~l~~l~~-L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l 317 (768)
T 3rgz_A 241 RAISTCTE-LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317 (768)
T ss_dssp HHTTTCSS-CCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC
T ss_pred HHHhcCCC-CCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC
Confidence 66666665 666666666666655543 66677777777777777777777664 788888888888888888888888
Q ss_pred CCCcEEEccCCcCccCCCC-----CccCCEEEcCCCCCCCCCC
Q 041736 337 PNLRNFSFDYNFFTGESPV-----CLDLQGFDDKRNCLRDKPR 374 (500)
Q Consensus 337 ~~L~~L~Ls~N~l~g~~p~-----~~~L~~l~l~~N~l~~~~~ 374 (500)
++|++|++++|.++|.+|. ..+|+.|++++|.+.+..+
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p 360 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCC
T ss_pred CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcccc
Confidence 8888888888888877764 3468888888888875544
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7e-35 Score=320.67 Aligned_cols=288 Identities=19% Similarity=0.297 Sum_probs=245.4
Q ss_pred hhHHHHHHHHHHHHhccCCCCCCCCCCCCCCC--CCc------------CceecCCCCCCCCcCcEEEEECCCCCCcccC
Q 041736 73 RIRSAYIALQAWKKAIISDPWNLTSNWVGCYV--CNY------------TGVFCAQALDNHSIRTVAGIDLNHGDIASYL 138 (500)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~--c~~------------~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~ 138 (500)
....++.||++||.++....|....+|...++ |+| .||.|+.. .+|+.|+|+++++.|.+
T Consensus 266 ~~~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~------~~V~~L~Ls~~~L~G~i 339 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN------GRVTGLSLAGFGAKGRV 339 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT------SCEEEEECTTTCCEEEE
T ss_pred cchHHHHHHHHHHHHcCCCCCCcCCCcccccCCccccccccccccccCcCceEecCC------CCEEEEECccCCCCCcC
Confidence 45567888888888874433544444544455 999 99999742 68999999999999999
Q ss_pred chhhcCCCCCCEEEc-CCCCCCcc--------------------------------------------------------
Q 041736 139 PEELGLLADIALFHV-NTNRFCGT-------------------------------------------------------- 161 (500)
Q Consensus 139 p~~l~~l~~L~~L~L-~~n~l~~~-------------------------------------------------------- 161 (500)
|..|++|++|++|+| ++|.++|.
T Consensus 340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~ 419 (876)
T 4ecn_A 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419 (876)
T ss_dssp CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence 999999999999999 77755443
Q ss_pred --------------------CCccccCCCCCCEEeCcCCcCCC-----------------cCchhcc--CCCCCcEEecc
Q 041736 162 --------------------LPRSFNKLKLLFELDLSNNRFAG-----------------KFPYVVL--GLPKLKFLDLR 202 (500)
Q Consensus 162 --------------------~p~~l~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~--~l~~L~~L~Ls 202 (500)
+|..|+++++|++|+|++|+|++ .+|..++ ++++|++|+|+
T Consensus 420 ~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls 499 (876)
T 4ecn_A 420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499 (876)
T ss_dssp CCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred ccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc
Confidence 78889999999999999999998 3898887 99999999999
Q ss_pred CCcCCCCCchhhcC-CCCCeEEccCCC-ccC-CCCCccCC--------CCcceEEeccccccccCch--hhhcccccCcE
Q 041736 203 YNEFEGKIPKALFD-KDLDAVFINNNR-FSF-ELPDNIGN--------SPVSVLVLANNKFHGCLPL--SFGNMSRTLNE 269 (500)
Q Consensus 203 ~N~l~g~~p~~~~~-~~L~~L~l~~n~-l~~-~~p~~~~~--------~~L~~L~l~~n~l~~~~p~--~l~~l~~~L~~ 269 (500)
+|++.+.+|..+.. .+|++|++++|+ ++| .+|..++. .+|++|++++|.+. .+|. .|+++.+ |++
T Consensus 500 ~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~-L~~ 577 (876)
T 4ecn_A 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK-LGL 577 (876)
T ss_dssp SCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT-CCE
T ss_pred CCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC-CCE
Confidence 99999999987776 899999999998 888 77765543 37999999999999 8888 8999997 999
Q ss_pred EEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCC-CcEEEcccCCCCCCCchhhcCCCC--CcEEEccC
Q 041736 270 VILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTS-LQQLNVAHNMLSGTVPDSVCSLPN--LRNFSFDY 346 (500)
Q Consensus 270 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~L~~N~l~g~ip~~l~~l~~--L~~L~Ls~ 346 (500)
|+|++|.++ .+| .++.+++|+.|+|++|+++ .+|..+..+++ |++|+|++|.++ .+|..+..+.. |++|+|++
T Consensus 578 L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~ 653 (876)
T 4ecn_A 578 LDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSY 653 (876)
T ss_dssp EECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCS
T ss_pred EECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcC
Confidence 999999999 677 8999999999999999999 89988999999 999999999998 88888776654 99999999
Q ss_pred CcCccCCCCCc---------cCCEEEcCCCCCCCC
Q 041736 347 NFFTGESPVCL---------DLQGFDDKRNCLRDK 372 (500)
Q Consensus 347 N~l~g~~p~~~---------~L~~l~l~~N~l~~~ 372 (500)
|+++|.++... +|+.|++++|.+...
T Consensus 654 N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~l 688 (876)
T 4ecn_A 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688 (876)
T ss_dssp SCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSC
T ss_pred CcCCCccccchhhhccccCCCcCEEEccCCcCCcc
Confidence 99988776432 577888888888743
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=3.7e-34 Score=283.55 Aligned_cols=269 Identities=17% Similarity=0.226 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCC-----CCCCCCcCceecCCCC---CCCCcCcEEEEECCCCCCcccCchhhcCCCC
Q 041736 76 SAYIALQAWKKAIISDPWNLTSNWV-----GCYVCNYTGVFCAQAL---DNHSIRTVAGIDLNHGDIASYLPEELGLLAD 147 (500)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~~~~~~w~-----~~~~c~~~gv~c~~~~---~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~ 147 (500)
.++.||.+||..+..|+.+..+.|. ..++|.|.|+.|.... ......+|+.|+|++|.+. .+|..+.++++
T Consensus 27 ~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~ 105 (328)
T 4fcg_A 27 PYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSH 105 (328)
T ss_dssp CHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTT
T ss_pred hHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCC
Confidence 4678899999887677777777783 4678999999994210 0112468999999999998 67888999999
Q ss_pred CCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhc----------CC
Q 041736 148 IALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALF----------DK 217 (500)
Q Consensus 148 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~----------~~ 217 (500)
|++|+|++|.++ .+|..++++++|++|+|++|+++ .+|..+.++++|++|+|++|++.+.+|..+. ..
T Consensus 106 L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~ 183 (328)
T 4fcg_A 106 LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183 (328)
T ss_dssp CSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEEST
T ss_pred CCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCC
Confidence 999999999999 89999999999999999999999 8899999999999999999999989988764 36
Q ss_pred CCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEec
Q 041736 218 DLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDV 296 (500)
Q Consensus 218 ~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 296 (500)
+|++|++++|+++ .+|..++. .+|++|++++|.+++ ++..++.+.+ |++|+|++|++.+.+|..++.+++|++|+|
T Consensus 184 ~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~-L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPK-LEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp TCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTT-CCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred CCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCC-CCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 7777777777776 55555443 567777777777773 5556677765 777777777777777777777777777777
Q ss_pred cCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCc
Q 041736 297 SYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFT 350 (500)
Q Consensus 297 s~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 350 (500)
++|++.+.+|..+.++++|++|+|++|.+.+.+|..+.++++|+.+++..|.+.
T Consensus 261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 777777777777777777777777777777777777777777777777665543
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.4e-33 Score=277.65 Aligned_cols=232 Identities=23% Similarity=0.409 Sum_probs=216.9
Q ss_pred CCCcCcEEEEECCC-CCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCC
Q 041736 118 NHSIRTVAGIDLNH-GDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKL 196 (500)
Q Consensus 118 ~~~~~~l~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 196 (500)
...+.+|+.|+|++ |.+.+.+|..|+++++|++|+|++|.+++.+|..|.++++|++|+|++|++++.+|..+..+++|
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 151 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence 44578899999995 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeccCCcCCCCCchhhcC-C-CCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEecc
Q 041736 197 KFLDLRYNEFEGKIPKALFD-K-DLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTN 274 (500)
Q Consensus 197 ~~L~Ls~N~l~g~~p~~~~~-~-~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~ 274 (500)
++|+|++|+++|.+|..+.. . +|++|++++|++++.++..+...+|++|++++|.+++.++..|..+.+ |++|+|++
T Consensus 152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~ 230 (313)
T 1ogq_A 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN-TQKIHLAK 230 (313)
T ss_dssp CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSC-CSEEECCS
T ss_pred CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCC-CCEEECCC
Confidence 99999999999999988876 4 899999999999999999888877999999999999999999999997 99999999
Q ss_pred CCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCc-CccC
Q 041736 275 NGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNF-FTGE 352 (500)
Q Consensus 275 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~ 352 (500)
|.+++.++. +..+++|++|+|++|+|++.+|..+..+++|++|+|++|.++|.+|.. ..+++|+++++++|. +.|.
T Consensus 231 N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 231 NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp SEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred CceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 999986665 888999999999999999999999999999999999999999999986 889999999999998 5553
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=2.2e-30 Score=268.04 Aligned_cols=131 Identities=19% Similarity=0.180 Sum_probs=62.9
Q ss_pred cceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcc
Q 041736 242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVA 321 (500)
Q Consensus 242 L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 321 (500)
|++|++++|.+.+.++..++.+.+ |++|+|++|.+++..+..+..+++|++|+|++|++++..+..+..+++|++|+|+
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHFTD-LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred ceEEEecCccccccchhhcccCCC-CCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 333344444444334444444443 5555555555554444445555555555555555544444445555555555555
Q ss_pred cCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC----CccCCEEEcCCCCCCCCC
Q 041736 322 HNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV----CLDLQGFDDKRNCLRDKP 373 (500)
Q Consensus 322 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~----~~~L~~l~l~~N~l~~~~ 373 (500)
+|.+++..+..+..+++|++|++++|++++..+. +..|+.|++++|.+.+..
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 5555544444455555555555555555443332 123455555555554443
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=1.9e-30 Score=268.44 Aligned_cols=253 Identities=19% Similarity=0.234 Sum_probs=165.7
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccC-CccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTL-PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD 200 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 200 (500)
.+|++|||++|.+.+..+..|+++++|++|+|++|.+.+.+ +..|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 45666666666666655555666666666666666555333 34455556666666666665555555555555555555
Q ss_pred ccCCcCCCCCchh--hcC-CCCCeEEccCCCccCCCCCc-c-CCCCcceEEeccccccccCchhhhcc------------
Q 041736 201 LRYNEFEGKIPKA--LFD-KDLDAVFINNNRFSFELPDN-I-GNSPVSVLVLANNKFHGCLPLSFGNM------------ 263 (500)
Q Consensus 201 Ls~N~l~g~~p~~--~~~-~~L~~L~l~~n~l~~~~p~~-~-~~~~L~~L~l~~n~l~~~~p~~l~~l------------ 263 (500)
|++|++++.++.. +.. .+|++|++++|++++..+.. + ...+|++|++++|.+.+..+..+..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 5555555433322 111 45555555555555444432 1 22344444444444444333322221
Q ss_pred ----------------------c---------------------------------------------------------
Q 041736 264 ----------------------S--------------------------------------------------------- 264 (500)
Q Consensus 264 ----------------------~--------------------------------------------------------- 264 (500)
.
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 1
Q ss_pred -----ccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCC
Q 041736 265 -----RTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNL 339 (500)
Q Consensus 265 -----~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L 339 (500)
.+|++|++++|.+.+.++..++.+++|++|+|++|++++..+..+..+++|++|+|++|.+++..+..+..+++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 126667777777777777888899999999999999998888889999999999999999988888889999999
Q ss_pred cEEEccCCcCccCCCC----CccCCEEEcCCCCCCCCCC
Q 041736 340 RNFSFDYNFFTGESPV----CLDLQGFDDKRNCLRDKPR 374 (500)
Q Consensus 340 ~~L~Ls~N~l~g~~p~----~~~L~~l~l~~N~l~~~~~ 374 (500)
++|+|++|++++..+. +.+|+.|++++|.+++.+.
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCccccCCH
Confidence 9999999999888665 3469999999999987654
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=2.6e-31 Score=286.20 Aligned_cols=233 Identities=17% Similarity=0.286 Sum_probs=196.2
Q ss_pred CcccCchhhcCCCCCCEEEcCCCCCCcc-----------------CCcccc--CCCCCCEEeCcCCcCCCcCchhccCCC
Q 041736 134 IASYLPEELGLLADIALFHVNTNRFCGT-----------------LPRSFN--KLKLLFELDLSNNRFAGKFPYVVLGLP 194 (500)
Q Consensus 134 l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 194 (500)
++| +|..|+++++|++|+|++|.|++. +|..++ ++++|++|+|++|++.+.+|..+.+++
T Consensus 195 l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 195 ITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred Ccc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence 335 788899999999999999999986 999999 999999999999999999999999999
Q ss_pred CCcEEeccCCc-CCC-CCchhhcC-------CCCCeEEccCCCccCCCCC--ccCC-CCcceEEeccccccccCchhhhc
Q 041736 195 KLKFLDLRYNE-FEG-KIPKALFD-------KDLDAVFINNNRFSFELPD--NIGN-SPVSVLVLANNKFHGCLPLSFGN 262 (500)
Q Consensus 195 ~L~~L~Ls~N~-l~g-~~p~~~~~-------~~L~~L~l~~n~l~~~~p~--~~~~-~~L~~L~l~~n~l~~~~p~~l~~ 262 (500)
+|++|+|++|+ ++| .+|..+.. .+|++|++++|+++ .+|. .++. .+|++|++++|.+.|.+| .|+.
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~ 351 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS 351 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCC
Confidence 99999999998 998 88887765 79999999999999 7887 6655 689999999999998888 8888
Q ss_pred ccccCcEEEeccCCCCCCCccccccCCC-ccEEeccCcccCCCChhhhhCCC--CCcEEEcccCCCCCCCchhhc-----
Q 041736 263 MSRTLNEVILTNNGLHSCLPEEIGLLKN-VTVFDVSYNKLMGELPDTIAEMT--SLQQLNVAHNMLSGTVPDSVC----- 334 (500)
Q Consensus 263 l~~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~L~~N~l~g~ip~~l~----- 334 (500)
+.+ |++|++++|.++ .+|..+..+++ |++|++++|+++ .+|..+..+. +|++|+|++|.+++.+|..+.
T Consensus 352 l~~-L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 352 EIK-LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp EEE-ESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred CCC-CCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence 886 999999999888 57888888888 888888888888 7777776654 788888888888887777777
Q ss_pred --CCCCCcEEEccCCcCccCCCC----CccCCEEEcCCCCCCCC
Q 041736 335 --SLPNLRNFSFDYNFFTGESPV----CLDLQGFDDKRNCLRDK 372 (500)
Q Consensus 335 --~l~~L~~L~Ls~N~l~g~~p~----~~~L~~l~l~~N~l~~~ 372 (500)
.+.+|++|++++|++++.... +.+|+.|++++|.+...
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i 472 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence 677888888888888743321 34677788888877743
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=6.9e-29 Score=258.46 Aligned_cols=252 Identities=17% Similarity=0.164 Sum_probs=158.9
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL 201 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 201 (500)
.+++.|||++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 45666777777776666666667777777777777776666666667777777777777766544455666667777777
Q ss_pred cCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCC
Q 041736 202 RYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS 279 (500)
Q Consensus 202 s~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~ 279 (500)
++|++++..+..+.. .+|++|++++|.+++..+..+.. .+|+.|++++|.+++..+..|..+.+ |++|+|++|.+.+
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~i~~ 190 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG-LIVLRLRHLNINA 190 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT-CCEEEEESCCCCE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC-CcEEeCCCCcCcE
Confidence 777666444444333 56666666666666544444433 45666666666665444444555554 5555555555554
Q ss_pred CCccccccCC------------------------CccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcC
Q 041736 280 CLPEEIGLLK------------------------NVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCS 335 (500)
Q Consensus 280 ~~p~~~~~l~------------------------~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~ 335 (500)
..+..+..++ +|++|+|++|++++.....+..+++|++|+|++|.+++..+..+..
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 4333333333 4555555556666443456777777888888888777666666777
Q ss_pred CCCCcEEEccCCcCccCCCCC----ccCCEEEcCCCCCCCCCC
Q 041736 336 LPNLRNFSFDYNFFTGESPVC----LDLQGFDDKRNCLRDKPR 374 (500)
Q Consensus 336 l~~L~~L~Ls~N~l~g~~p~~----~~L~~l~l~~N~l~~~~~ 374 (500)
+++|++|+|++|++++..+.. ..|+.|++++|.+++...
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 313 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE 313 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCH
Confidence 778888888888777765543 357788888887776543
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.8e-29 Score=277.76 Aligned_cols=227 Identities=17% Similarity=0.278 Sum_probs=178.2
Q ss_pred CchhhcCCCCCCEEEcCCCCCCc-----------------cCCcccc--CCCCCCEEeCcCCcCCCcCchhccCCCCCcE
Q 041736 138 LPEELGLLADIALFHVNTNRFCG-----------------TLPRSFN--KLKLLFELDLSNNRFAGKFPYVVLGLPKLKF 198 (500)
Q Consensus 138 ~p~~l~~l~~L~~L~L~~n~l~~-----------------~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 198 (500)
+|..|+++++|++|+|++|.|++ .+|..++ ++++|++|+|++|++.+.+|..|.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 77788999999999999999998 3888877 9999999999999999999999999999999
Q ss_pred EeccCCc-CCC-CCchhhcC--------CCCCeEEccCCCccCCCCC--ccCC-CCcceEEeccccccccCchhhhcccc
Q 041736 199 LDLRYNE-FEG-KIPKALFD--------KDLDAVFINNNRFSFELPD--NIGN-SPVSVLVLANNKFHGCLPLSFGNMSR 265 (500)
Q Consensus 199 L~Ls~N~-l~g-~~p~~~~~--------~~L~~L~l~~n~l~~~~p~--~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~ 265 (500)
|+|++|+ ++| .+|..+.. ++|++|++++|+++ .+|. .++. .+|+.|+|++|.+. .+| .|+.+.+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 9999998 887 78876553 38999999999998 7887 5554 77999999999988 777 8888886
Q ss_pred cCcEEEeccCCCCCCCccccccCCC-ccEEeccCcccCCCChhhhhCCCC--CcEEEcccCCCCCCCchhh---c--CCC
Q 041736 266 TLNEVILTNNGLHSCLPEEIGLLKN-VTVFDVSYNKLMGELPDTIAEMTS--LQQLNVAHNMLSGTVPDSV---C--SLP 337 (500)
Q Consensus 266 ~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~L~~N~l~g~ip~~l---~--~l~ 337 (500)
|++|+|++|.++ .+|..+..+++ |++|+|++|+++ .+|..+..+.. |+.|+|++|.+.|.+|... . .+.
T Consensus 597 -L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 597 -LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp -ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred -ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 999999999988 58888888888 888999888888 77777665543 7778888887776554321 1 233
Q ss_pred CCcEEEccCCcCccCCCC-----CccCCEEEcCCCCCCC
Q 041736 338 NLRNFSFDYNFFTGESPV-----CLDLQGFDDKRNCLRD 371 (500)
Q Consensus 338 ~L~~L~Ls~N~l~g~~p~-----~~~L~~l~l~~N~l~~ 371 (500)
+|++|+|++|.++. +|. +..|+.|++++|.+..
T Consensus 674 ~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~~ 711 (876)
T 4ecn_A 674 NASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTS 711 (876)
T ss_dssp CEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCSC
T ss_pred CcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCCc
Confidence 66666666666663 332 2356666666666653
No 13
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=6.1e-28 Score=239.10 Aligned_cols=261 Identities=17% Similarity=0.209 Sum_probs=218.0
Q ss_pred CCCcCceecCCCC----CCCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcC
Q 041736 104 VCNYTGVFCAQAL----DNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSN 179 (500)
Q Consensus 104 ~c~~~gv~c~~~~----~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 179 (500)
.|.++.+.|.... ...-..+++.|+|++|.+++..+..|+++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 4678888885321 111235789999999999998887899999999999999999988899999999999999999
Q ss_pred CcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcC-CCCCeEEccCCCccC--CCCCccCC-CCcceEEecccccccc
Q 041736 180 NRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSF--ELPDNIGN-SPVSVLVLANNKFHGC 255 (500)
Q Consensus 180 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~--~~p~~~~~-~~L~~L~l~~n~l~~~ 255 (500)
|+++ .++..+. ++|++|++++|++++..+..+.. .+|++|++++|.+.. ..+..+.. .+|++|++++|.++.
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 185 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT- 185 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence 9998 5665554 79999999999999554444443 899999999999963 44544443 789999999999984
Q ss_pred CchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcC
Q 041736 256 LPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCS 335 (500)
Q Consensus 256 ~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~ 335 (500)
++..+. . +|++|++++|.+++..+..+..+++|++|+|++|.+++..+..+..+++|++|+|++|.++ .+|..+..
T Consensus 186 l~~~~~--~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 IPQGLP--P-SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp CCSSCC--T-TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred CCcccc--c-cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 565554 4 4999999999999988899999999999999999999877778999999999999999999 88889999
Q ss_pred CCCCcEEEccCCcCccCCCCC----------ccCCEEEcCCCCCCCC
Q 041736 336 LPNLRNFSFDYNFFTGESPVC----------LDLQGFDDKRNCLRDK 372 (500)
Q Consensus 336 l~~L~~L~Ls~N~l~g~~p~~----------~~L~~l~l~~N~l~~~ 372 (500)
+++|++|++++|+|++..... ..+..+++++|.+...
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc
Confidence 999999999999998765542 2467899999987643
No 14
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=7.5e-29 Score=242.96 Aligned_cols=246 Identities=20% Similarity=0.235 Sum_probs=181.3
Q ss_pred CCcCceecCCCC----CCCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCc--cCCccccCCCCCCEEeCc
Q 041736 105 CNYTGVFCAQAL----DNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCG--TLPRSFNKLKLLFELDLS 178 (500)
Q Consensus 105 c~~~gv~c~~~~----~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls 178 (500)
|.|+++.|.... ......++++|+|++|.+.......|.++++|++|+|++|.++. .++..+..+++|++|+|+
T Consensus 7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred eCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 788888886421 11223578899999998886555567889999999999998873 335667788899999999
Q ss_pred CCcCCCcCchhccCCCCCcEEeccCCcCCCCCc-hhhcC-CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccc-
Q 041736 179 NNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIP-KALFD-KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHG- 254 (500)
Q Consensus 179 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p-~~~~~-~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~- 254 (500)
+|.++ .++..+..+++|++|++++|++++... ..+.. .+|++|++++|.+.+..+..+.. .+|++|++++|.+.+
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 99888 566678888999999999998874433 12222 67888888888877666665543 667777777777775
Q ss_pred cCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhc
Q 041736 255 CLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVC 334 (500)
Q Consensus 255 ~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~ 334 (500)
.++..+..+.+ |++|++++|.+++..+..+..+++|++|+|++|++++..+..+..+++|++|+|++|.+++..+..+.
T Consensus 166 ~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 166 FLPDIFTELRN-LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp EECSCCTTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred cchhHHhhCcC-CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 46667777775 77777777777776677777777777777777777766666677777777777777777777777777
Q ss_pred CCC-CCcEEEccCCcCccC
Q 041736 335 SLP-NLRNFSFDYNFFTGE 352 (500)
Q Consensus 335 ~l~-~L~~L~Ls~N~l~g~ 352 (500)
.++ +|++|++++|.|++.
T Consensus 245 ~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCTTCCEEECTTCCEECS
T ss_pred hhhccCCEEEccCCCeecc
Confidence 763 777777777777654
No 15
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=3.6e-28 Score=240.98 Aligned_cols=259 Identities=18% Similarity=0.223 Sum_probs=219.8
Q ss_pred CCcCceecCCCC----CCCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCC
Q 041736 105 CNYTGVFCAQAL----DNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNN 180 (500)
Q Consensus 105 c~~~gv~c~~~~----~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 180 (500)
|.|+.+.|.... ...-..+++.|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 678888885321 1122367999999999999888889999999999999999999888999999999999999999
Q ss_pred cCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcC-CCCCeEEccCCCcc--CCCCCccCCCCcceEEeccccccccCc
Q 041736 181 RFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFS--FELPDNIGNSPVSVLVLANNKFHGCLP 257 (500)
Q Consensus 181 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~--~~~p~~~~~~~L~~L~l~~n~l~~~~p 257 (500)
+++ .++..+. ++|++|++++|++++..+..+.. .+|++|++++|.++ +..+..+...+|++|++++|.+++ ++
T Consensus 113 ~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~ 188 (332)
T 2ft3_A 113 HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IP 188 (332)
T ss_dssp CCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CC
T ss_pred cCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-cC
Confidence 998 6666554 89999999999998444333433 89999999999996 356666666699999999999985 66
Q ss_pred hhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCC
Q 041736 258 LSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLP 337 (500)
Q Consensus 258 ~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~ 337 (500)
..+. . +|++|++++|.+++..+..+..+++|++|+|++|++++..+..+..+++|++|+|++|.++ .+|..+..++
T Consensus 189 ~~~~--~-~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~ 264 (332)
T 2ft3_A 189 KDLP--E-TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK 264 (332)
T ss_dssp SSSC--S-SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCT
T ss_pred cccc--C-CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCc
Confidence 6554 4 4999999999999988889999999999999999999888888999999999999999999 8888899999
Q ss_pred CCcEEEccCCcCccCCCCC----------ccCCEEEcCCCCCCC
Q 041736 338 NLRNFSFDYNFFTGESPVC----------LDLQGFDDKRNCLRD 371 (500)
Q Consensus 338 ~L~~L~Ls~N~l~g~~p~~----------~~L~~l~l~~N~l~~ 371 (500)
+|++|++++|++++..... ..++.+++++|.+..
T Consensus 265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence 9999999999998775542 247789999998763
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=3.3e-28 Score=253.38 Aligned_cols=243 Identities=20% Similarity=0.228 Sum_probs=197.5
Q ss_pred EEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCc
Q 041736 126 GIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNE 205 (500)
Q Consensus 126 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 205 (500)
.++.++++++. +|..+ ..+|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|+
T Consensus 15 ~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCc-CCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 34555555543 45443 3689999999999998888999999999999999999998889999999999999999999
Q ss_pred CCCCCchhhcC--CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCc
Q 041736 206 FEGKIPKALFD--KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLP 282 (500)
Q Consensus 206 l~g~~p~~~~~--~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p 282 (500)
++ .++...+. .+|++|++++|++.+..+..+.. .+|++|++++|.+.+..+..|..+.+ |++|+|++|++++..+
T Consensus 92 l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 92 LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS-LEQLTLEKCNLTSIPT 169 (477)
T ss_dssp CC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT-CCEEEEESCCCSSCCH
T ss_pred CC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCC-CCEEECCCCcCcccCh
Confidence 98 55554433 89999999999999877776655 78999999999999888889999997 9999999999999777
Q ss_pred cccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEccc------------------------CCCCCCCchhhcCCCC
Q 041736 283 EEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAH------------------------NMLSGTVPDSVCSLPN 338 (500)
Q Consensus 283 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~------------------------N~l~g~ip~~l~~l~~ 338 (500)
..+..+++|+.|+|++|.+++..+..+..+.+|++|+|++ |.+++.....+..+++
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence 7899999999999999999876666666666555555554 5555333346777888
Q ss_pred CcEEEccCCcCccCCCC----CccCCEEEcCCCCCCCCC
Q 041736 339 LRNFSFDYNFFTGESPV----CLDLQGFDDKRNCLRDKP 373 (500)
Q Consensus 339 L~~L~Ls~N~l~g~~p~----~~~L~~l~l~~N~l~~~~ 373 (500)
|++|+|++|.+++..+. +..|+.|++++|.+.+..
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 288 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceEC
Confidence 88888888888766553 346888888888887653
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=3.8e-28 Score=246.22 Aligned_cols=248 Identities=17% Similarity=0.198 Sum_probs=154.8
Q ss_pred cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD 200 (500)
Q Consensus 121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 200 (500)
+.+++.|+++++.+...-...|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+.++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 35566666666666554444456666666666666666655555666666666666666666655555666666666666
Q ss_pred ccCCcCCCCCchhhc--CCCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcc--------------
Q 041736 201 LRYNEFEGKIPKALF--DKDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNM-------------- 263 (500)
Q Consensus 201 Ls~N~l~g~~p~~~~--~~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l-------------- 263 (500)
|++|+++ .++..++ ..+|++|++++|++++..+..+.. .+|++|++++|.+++.....+.++
T Consensus 124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~ 202 (390)
T 3o6n_A 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202 (390)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence 6666666 4444432 256666666666666554444433 556666666666554311111111
Q ss_pred -----------------------cccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEc
Q 041736 264 -----------------------SRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNV 320 (500)
Q Consensus 264 -----------------------~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 320 (500)
. +|++|++++|.+++. ..+..+++|++|+|++|.+++..+..+..+++|++|+|
T Consensus 203 ~~~~L~~L~l~~n~l~~~~~~~~~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (390)
T 3o6n_A 203 IPIAVEELDASHNSINVVRGPVNV-ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279 (390)
T ss_dssp CCSSCSEEECCSSCCCEEECCCCS-SCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred CCCcceEEECCCCeeeeccccccc-cccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence 1 266666666666653 45677777888888888877766777777778888888
Q ss_pred ccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC---CccCCEEEcCCCCCCCCC
Q 041736 321 AHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV---CLDLQGFDDKRNCLRDKP 373 (500)
Q Consensus 321 ~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~---~~~L~~l~l~~N~l~~~~ 373 (500)
++|.+++ ++..+..+++|++|++++|++++.... +..|+.|++++|.+....
T Consensus 280 ~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 280 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp CSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred CCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC
Confidence 8887773 555566777788888888877744322 236778888888776653
No 18
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.9e-28 Score=245.05 Aligned_cols=270 Identities=16% Similarity=0.171 Sum_probs=218.7
Q ss_pred CCCCCCcCceecCCCCC------CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCE
Q 041736 101 GCYVCNYTGVFCAQALD------NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFE 174 (500)
Q Consensus 101 ~~~~c~~~gv~c~~~~~------~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 174 (500)
....|.|.++ |+.... ..-..+|+.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++
T Consensus 26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 3456888877 543211 122358999999999999877778999999999999999999888888999999999
Q ss_pred EeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCch--hhc-CCCCCeEEccCCC-ccCCCCCccCC-CCcceEEecc
Q 041736 175 LDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPK--ALF-DKDLDAVFINNNR-FSFELPDNIGN-SPVSVLVLAN 249 (500)
Q Consensus 175 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~--~~~-~~~L~~L~l~~n~-l~~~~p~~~~~-~~L~~L~l~~ 249 (500)
|+|++|++++..+..+.++++|++|+|++|+++ .++. .+. .++|++|++++|+ +....+..+.. .+|++|++++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 999999999666666999999999999999998 5655 332 3899999999995 55444555544 7899999999
Q ss_pred ccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhh---hCCCCCcEEEcccCCCC
Q 041736 250 NKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTI---AEMTSLQQLNVAHNMLS 326 (500)
Q Consensus 250 n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~L~~N~l~ 326 (500)
|.+.+..+..+..+.+ |++|++++|.+.......+..+++|++|++++|++++.....+ .....++.++|+++.+.
T Consensus 184 n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~ 262 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQN-VSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262 (353)
T ss_dssp TTCCEECTTTTTTCSE-EEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC
T ss_pred CCcCccCHHHHhcccc-CCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccccc
Confidence 9999988999999997 9999999999976444445678999999999999997554433 34677899999999988
Q ss_pred C----CCchhhcCCCCCcEEEccCCcCccCCCC----CccCCEEEcCCCCCCCCC
Q 041736 327 G----TVPDSVCSLPNLRNFSFDYNFFTGESPV----CLDLQGFDDKRNCLRDKP 373 (500)
Q Consensus 327 g----~ip~~l~~l~~L~~L~Ls~N~l~g~~p~----~~~L~~l~l~~N~l~~~~ 373 (500)
+ .+|..+..+++|++|++++|+++..... +.+|+.|++++|.+.+..
T Consensus 263 ~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 263 DESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 6 4678889999999999999999854433 336899999999988754
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=5.2e-28 Score=258.79 Aligned_cols=248 Identities=17% Similarity=0.194 Sum_probs=145.1
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL 201 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 201 (500)
.+++.|++++|.+....+..|..+++|++|+|++|.+++..+..|+.+++|++|+|++|.+++..+..|.++++|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 44555555555555544444555556666666666555555555555556666666666655555555555556666666
Q ss_pred cCCcCCCCCchhhc--CCCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcc---------------
Q 041736 202 RYNEFEGKIPKALF--DKDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNM--------------- 263 (500)
Q Consensus 202 s~N~l~g~~p~~~~--~~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l--------------- 263 (500)
++|.++ .++..++ ..+|++|++++|.+++..+..++. .+|++|++++|.+++.....+.++
T Consensus 131 ~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 131 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred eCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence 666555 3333322 145555666655555554444433 455555555555543221111111
Q ss_pred ---------------------cccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEccc
Q 041736 264 ---------------------SRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAH 322 (500)
Q Consensus 264 ---------------------~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 322 (500)
..+|++|+|++|.+++. ..+..+++|++|+|++|.+++.++..++.+++|++|+|++
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred CchhheeeccCCcccccccccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence 01256666666666652 5567777777777777777777777777777777777777
Q ss_pred CCCCCCCchhhcCCCCCcEEEccCCcCccCCCC---CccCCEEEcCCCCCCCCC
Q 041736 323 NMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV---CLDLQGFDDKRNCLRDKP 373 (500)
Q Consensus 323 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~---~~~L~~l~l~~N~l~~~~ 373 (500)
|.+++ ++..+..+++|++|+|++|.+++.... +..|+.|++++|.+.+..
T Consensus 288 N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 288 NRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp SCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred CCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC
Confidence 77774 455666677777777777777743222 235777777777776653
No 20
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=5.9e-28 Score=239.00 Aligned_cols=223 Identities=16% Similarity=0.171 Sum_probs=203.9
Q ss_pred CCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcC-CCCCeE
Q 041736 144 LLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAV 222 (500)
Q Consensus 144 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L 222 (500)
...++++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..+.++++|++|+|++|+++ .+|..+.. .+|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4689999999999998 88888999999999999999999 89999999999999999999999 88877665 899999
Q ss_pred EccCCCccCCCCCccC----------CCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCcc
Q 041736 223 FINNNRFSFELPDNIG----------NSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVT 292 (500)
Q Consensus 223 ~l~~n~l~~~~p~~~~----------~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 292 (500)
++++|++.+.+|..++ ..+|++|++++|.++ .+|..++.+.+ |++|+|++|.+++ ++..++.+++|+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~-L~~L~L~~N~l~~-l~~~l~~l~~L~ 232 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQN-LKSLKIRNSPLSA-LGPAIHHLPKLE 232 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTT-CCEEEEESSCCCC-CCGGGGGCTTCC
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCC-CCEEEccCCCCCc-CchhhccCCCCC
Confidence 9999999999998775 578999999999999 88999999997 9999999999997 667899999999
Q ss_pred EEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCCc----cCCEEEcCCCC
Q 041736 293 VFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL----DLQGFDDKRNC 368 (500)
Q Consensus 293 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~~----~L~~l~l~~N~ 368 (500)
+|+|++|++.+.+|..++.+++|++|+|++|.+.+.+|..+.++++|++|+|++|.+.+.+|..+ .++.+++..|.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999743 57788887776
Q ss_pred CCCC
Q 041736 369 LRDK 372 (500)
Q Consensus 369 l~~~ 372 (500)
+...
T Consensus 313 ~~~l 316 (328)
T 4fcg_A 313 QAQL 316 (328)
T ss_dssp SCC-
T ss_pred HHHH
Confidence 6543
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=5.3e-28 Score=259.30 Aligned_cols=251 Identities=17% Similarity=0.140 Sum_probs=144.5
Q ss_pred cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCch-hccCCCCCcEE
Q 041736 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPY-VVLGLPKLKFL 199 (500)
Q Consensus 121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L 199 (500)
+.+|+.|+|++|.++ .+|..+..+++|++|++++|.+++..+..+.++++|++|+|++|.+.+.++. .+..+++|++|
T Consensus 277 l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 277 FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp CTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred ccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 344555555555554 3444455555555555555555544444555555555555555555443332 24555555555
Q ss_pred eccCCcCCCCC--chhhcC-CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchh-hhcccccCcEEEecc
Q 041736 200 DLRYNEFEGKI--PKALFD-KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLS-FGNMSRTLNEVILTN 274 (500)
Q Consensus 200 ~Ls~N~l~g~~--p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~-l~~l~~~L~~L~Ls~ 274 (500)
++++|++++.. +..+.. .+|++|++++|++.+..+..+.. .+|++|++++|.+.+..+.. +..+.+ |++|++++
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~ 434 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL-LKVLNLSH 434 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT-CCEEECTT
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc-CCEEECCC
Confidence 55555554322 222222 45666666666655554444433 45666666666666554433 556664 66777777
Q ss_pred CCCCCCCccccccCCCccEEeccCcccCCC---ChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCcc
Q 041736 275 NGLHSCLPEEIGLLKNVTVFDVSYNKLMGE---LPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTG 351 (500)
Q Consensus 275 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~---~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 351 (500)
|.+++..+..++.+++|++|+|++|++++. .+..+..+++|++|+|++|.+++..+..+..+++|++|++++|++++
T Consensus 435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence 766666666666677777777777766652 22456666777777777777776666667777777777777777776
Q ss_pred CCCCC----ccCCEEEcCCCCCCCCCC
Q 041736 352 ESPVC----LDLQGFDDKRNCLRDKPR 374 (500)
Q Consensus 352 ~~p~~----~~L~~l~l~~N~l~~~~~ 374 (500)
..+.. ..| .|++++|.+++..+
T Consensus 515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 515 SSIEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp GGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred CChhHhCccccc-EEECcCCcccccCH
Confidence 65432 245 67777777776543
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=251.87 Aligned_cols=246 Identities=20% Similarity=0.249 Sum_probs=145.9
Q ss_pred CcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCC-cCchhccCCCCCcE
Q 041736 120 SIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAG-KFPYVVLGLPKLKF 198 (500)
Q Consensus 120 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~ 198 (500)
.+.+|+.|+|++|.+++..+..|+++++|++|+|++|.++ .+|.. .+++|++|+|++|++++ .+|..++++++|++
T Consensus 43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~ 119 (520)
T 2z7x_B 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119 (520)
T ss_dssp TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCE
T ss_pred ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceE
Confidence 4456666666666666666666666666666666666666 44443 56666666666666665 35566666667777
Q ss_pred EeccCCcCCCCCchhhcCCCC--CeEEccCCCc--cCCCCCccCC-----------------------------------
Q 041736 199 LDLRYNEFEGKIPKALFDKDL--DAVFINNNRF--SFELPDNIGN----------------------------------- 239 (500)
Q Consensus 199 L~Ls~N~l~g~~p~~~~~~~L--~~L~l~~n~l--~~~~p~~~~~----------------------------------- 239 (500)
|+|++|++++.. .....+| ++|++++|++ .+..+..+..
T Consensus 120 L~L~~n~l~~~~--~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l 197 (520)
T 2z7x_B 120 LGLSTTHLEKSS--VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197 (520)
T ss_dssp EEEEESSCCGGG--GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCE
T ss_pred EEecCcccchhh--ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccc
Confidence 777766665411 1111455 7777777776 4444443322
Q ss_pred -------------------------------------------------CCcceEEeccccccccCchhh----------
Q 041736 240 -------------------------------------------------SPVSVLVLANNKFHGCLPLSF---------- 260 (500)
Q Consensus 240 -------------------------------------------------~~L~~L~l~~n~l~~~~p~~l---------- 260 (500)
.+|++|++++|.+.|.+|..+
T Consensus 198 ~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~ 277 (520)
T 2z7x_B 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA 277 (520)
T ss_dssp EECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCE
T ss_pred cccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCce
Confidence 157777777777777666655
Q ss_pred -------------------------------------------hcccccCcEEEeccCCCCCCCccccccCCCccEEecc
Q 041736 261 -------------------------------------------GNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVS 297 (500)
Q Consensus 261 -------------------------------------------~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 297 (500)
..+.+ |++|++++|.+++.++..++.+++|++|+|+
T Consensus 278 L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 356 (520)
T 2z7x_B 278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP-FLHLDFSNNLLTDTVFENCGHLTELETLILQ 356 (520)
T ss_dssp EEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC-CCEEECCSSCCCTTTTTTCCCCSSCCEEECC
T ss_pred eEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCc-ccEEEeECCccChhhhhhhccCCCCCEEEcc
Confidence 23333 5556666666665555556666666666666
Q ss_pred CcccCC--CChhhhhCCCCCcEEEcccCCCCCCCchh-hcCCCCCcEEEccCCcCccCCCCC--ccCCEEEcCCCCCCC
Q 041736 298 YNKLMG--ELPDTIAEMTSLQQLNVAHNMLSGTVPDS-VCSLPNLRNFSFDYNFFTGESPVC--LDLQGFDDKRNCLRD 371 (500)
Q Consensus 298 ~n~l~~--~~p~~l~~l~~L~~L~L~~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~~p~~--~~L~~l~l~~N~l~~ 371 (500)
+|++++ .++..+..+++|++|+|++|.+++.+|.. +..+++|++|++++|.+++.++.. ..|+.|++++|.++.
T Consensus 357 ~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ 435 (520)
T 2z7x_B 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS 435 (520)
T ss_dssp SSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCC
T ss_pred CCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccc
Confidence 666654 34455556666666666666666544443 455566666666666665555443 256666666666653
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=2.3e-27 Score=240.49 Aligned_cols=245 Identities=20% Similarity=0.179 Sum_probs=164.2
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL 201 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 201 (500)
++|+.|+|++|.+.+..+..|+.+++|++|+|++|.+++..+..|.++++|++|+|++|+++......|.++++|++|+|
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 44555555555555444445555555555555555555444444555555555555555555322223445555555555
Q ss_pred cCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCc--------------------------------------cCCCCc
Q 041736 202 RYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDN--------------------------------------IGNSPV 242 (500)
Q Consensus 202 s~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~--------------------------------------~~~~~L 242 (500)
++|++++..+..+.. .+|++|++++|++++.-... ....+|
T Consensus 149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L 228 (390)
T 3o6n_A 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 228 (390)
T ss_dssp CSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSC
T ss_pred CCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccc
Confidence 555554333322222 44555555544443211000 011357
Q ss_pred ceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEccc
Q 041736 243 SVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAH 322 (500)
Q Consensus 243 ~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 322 (500)
+.|++++|.+++. ..+..+.+ |++|++++|.+++..+..+..+++|++|+|++|++++ ++..+..+++|++|+|++
T Consensus 229 ~~L~l~~n~l~~~--~~l~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 229 TILKLQHNNLTDT--AWLLNYPG-LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH 304 (390)
T ss_dssp CEEECCSSCCCCC--GGGGGCTT-CSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCS
T ss_pred cEEECCCCCCccc--HHHcCCCC-ccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCC
Confidence 8888888888754 57888887 9999999999999889999999999999999999994 666778899999999999
Q ss_pred CCCCCCCchhhcCCCCCcEEEccCCcCccCCCC-CccCCEEEcCCCCCCC
Q 041736 323 NMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV-CLDLQGFDDKRNCLRD 371 (500)
Q Consensus 323 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-~~~L~~l~l~~N~l~~ 371 (500)
|.++ .++..+..+++|++|++++|.+++.... ...|+.|++++|.+.+
T Consensus 305 n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 305 NHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEH
T ss_pred Ccce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccc
Confidence 9998 6777788899999999999999876433 4579999999998764
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=2e-27 Score=250.11 Aligned_cols=107 Identities=21% Similarity=0.260 Sum_probs=52.0
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL 201 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 201 (500)
.+|+.|+|++|.+.+..+..|.++++|++|+|++|++++..+..|+++++|++|+|++|+++ .+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 34455555555555444444555555555555555555444445555555555555555554 33333 4455555555
Q ss_pred cCCcCCC-CCchhhcC-CCCCeEEccCCCccC
Q 041736 202 RYNEFEG-KIPKALFD-KDLDAVFINNNRFSF 231 (500)
Q Consensus 202 s~N~l~g-~~p~~~~~-~~L~~L~l~~n~l~~ 231 (500)
++|++++ .+|..+.. .+|++|++++|++++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch
Confidence 5555543 23333332 455555555555443
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=9.7e-28 Score=254.12 Aligned_cols=174 Identities=18% Similarity=0.247 Sum_probs=136.7
Q ss_pred CCcCceecCCCC------CCCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCc
Q 041736 105 CNYTGVFCAQAL------DNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLS 178 (500)
Q Consensus 105 c~~~gv~c~~~~------~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 178 (500)
|.|.|+ |+... ...-..+|++|+|++|.+++..+..|+++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 4 C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 4 CDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82 (549)
T ss_dssp ECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC
Confidence 777776 65321 01123579999999999999888899999999999999999998888899999999999999
Q ss_pred CCcCCCcCchhccCCCCCcEEeccCCcCCC-CCchhhcC-CCCCeEEccCCCccCCCC-CccC-CCCcceEEeccccccc
Q 041736 179 NNRFAGKFPYVVLGLPKLKFLDLRYNEFEG-KIPKALFD-KDLDAVFINNNRFSFELP-DNIG-NSPVSVLVLANNKFHG 254 (500)
Q Consensus 179 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g-~~p~~~~~-~~L~~L~l~~n~l~~~~p-~~~~-~~~L~~L~l~~n~l~~ 254 (500)
+|++++..+..|.++++|++|+|++|++++ .++..+.. .+|++|++++|++.+.++ ..+. ..+|++|++++|.+.+
T Consensus 83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 999998888889999999999999999985 23444433 789999999998665665 3343 3678999999999888
Q ss_pred cCchhhhcccc-----------------------cCcEEEeccCCCCC
Q 041736 255 CLPLSFGNMSR-----------------------TLNEVILTNNGLHS 279 (500)
Q Consensus 255 ~~p~~l~~l~~-----------------------~L~~L~Ls~n~l~~ 279 (500)
.++..++.+.+ +|++|++++|++++
T Consensus 163 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 163 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp ECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred cChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 77777655432 26667777776665
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=2.1e-27 Score=252.36 Aligned_cols=249 Identities=20% Similarity=0.212 Sum_probs=158.4
Q ss_pred CCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCC-cCchhccCCCCCc
Q 041736 119 HSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAG-KFPYVVLGLPKLK 197 (500)
Q Consensus 119 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~ 197 (500)
..+.+|++|+|++|.+++..+..|+.+++|++|+|++|.|+ .+|.. .+++|++|+|++|++++ .+|..|.++++|+
T Consensus 73 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~ 149 (562)
T 3a79_B 73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLT 149 (562)
T ss_dssp TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCC
T ss_pred ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCccc
Confidence 34556666666666666665666666666666666666666 44443 56666666666666664 2345666666666
Q ss_pred EEeccCCcCCCCCchhhcCCCC--CeEEccCCCc--cCCCCCccCC----------------------------------
Q 041736 198 FLDLRYNEFEGKIPKALFDKDL--DAVFINNNRF--SFELPDNIGN---------------------------------- 239 (500)
Q Consensus 198 ~L~Ls~N~l~g~~p~~~~~~~L--~~L~l~~n~l--~~~~p~~~~~---------------------------------- 239 (500)
+|+|++|++++.....+ .+| ++|++++|++ ++..+..+..
T Consensus 150 ~L~L~~n~l~~~~~~~l--~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~ 227 (562)
T 3a79_B 150 FLGLSAAKFRQLDLLPV--AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227 (562)
T ss_dssp EEEEECSBCCTTTTGGG--TTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEE
T ss_pred EEecCCCccccCchhhh--hhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEec
Confidence 66666666654211111 334 6777777666 4443332211
Q ss_pred ------------------------------------------------CCcceEEeccccccccCchhh-----------
Q 041736 240 ------------------------------------------------SPVSVLVLANNKFHGCLPLSF----------- 260 (500)
Q Consensus 240 ------------------------------------------------~~L~~L~l~~n~l~~~~p~~l----------- 260 (500)
.+|++|++++|.+.|.+|..+
T Consensus 228 l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L 307 (562)
T 3a79_B 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL 307 (562)
T ss_dssp EECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEE
T ss_pred ccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhe
Confidence 156667777777776666544
Q ss_pred ------------------------------------------hcccccCcEEEeccCCCCCCCccccccCCCccEEeccC
Q 041736 261 ------------------------------------------GNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSY 298 (500)
Q Consensus 261 ------------------------------------------~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 298 (500)
..+.+ |++|++++|.+++.++..++++++|++|+|++
T Consensus 308 ~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 386 (562)
T 3a79_B 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS-FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386 (562)
T ss_dssp EEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC-CCEEECCSSCCCTTTTTTCCSCSSCCEEECCS
T ss_pred ehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCC-ceEEECCCCccccchhhhhcccCCCCEEECCC
Confidence 34444 77777777777777777777777777777777
Q ss_pred cccCC--CChhhhhCCCCCcEEEcccCCCCCCCch-hhcCCCCCcEEEccCCcCccCCCCCc--cCCEEEcCCCCCCCCC
Q 041736 299 NKLMG--ELPDTIAEMTSLQQLNVAHNMLSGTVPD-SVCSLPNLRNFSFDYNFFTGESPVCL--DLQGFDDKRNCLRDKP 373 (500)
Q Consensus 299 n~l~~--~~p~~l~~l~~L~~L~L~~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~~p~~~--~L~~l~l~~N~l~~~~ 373 (500)
|++++ .++..+..+++|++|+|++|.+++.++. .+..+++|++|++++|++++.++... .|+.|++++|.++..+
T Consensus 387 N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip 466 (562)
T 3a79_B 387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIP 466 (562)
T ss_dssp SCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCC
T ss_pred CCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccC
Confidence 77775 2345567777777777777777765554 36667777777777777777666543 6778888888776443
No 27
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=4.1e-27 Score=252.36 Aligned_cols=249 Identities=16% Similarity=0.176 Sum_probs=223.5
Q ss_pred cEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEecc
Q 041736 123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLR 202 (500)
Q Consensus 123 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 202 (500)
+++.|++++|.+.+..+..|+.+++|++|+|++|.++ .+|..+.++++|++|+|++|++++..+..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 7999999999999988888999999999999999998 788899999999999999999998888899999999999999
Q ss_pred CCcCCCCCchhhcC--CCCCeEEccCCCccCCC--CCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCC
Q 041736 203 YNEFEGKIPKALFD--KDLDAVFINNNRFSFEL--PDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGL 277 (500)
Q Consensus 203 ~N~l~g~~p~~~~~--~~L~~L~l~~n~l~~~~--p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l 277 (500)
+|.+.+.++...+. .+|++|++++|++++.. +..++. .+|++|++++|.+.+..+..|..+.+ |++|++++|.+
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l 412 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ-LELLDLAFTRL 412 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT-CSEEECTTCCE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc-CCeEECCCCcC
Confidence 99999888776443 89999999999998754 444444 78999999999999988999999997 99999999999
Q ss_pred CCCCcc-ccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCC---CchhhcCCCCCcEEEccCCcCccCC
Q 041736 278 HSCLPE-EIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGT---VPDSVCSLPNLRNFSFDYNFFTGES 353 (500)
Q Consensus 278 ~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~---ip~~l~~l~~L~~L~Ls~N~l~g~~ 353 (500)
.+..+. .+..+++|++|++++|.+++..+..+..+++|++|+|++|.+++. .+..+..+++|++|++++|++++..
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 987654 489999999999999999998899999999999999999999873 2357889999999999999999887
Q ss_pred CCC----ccCCEEEcCCCCCCCCC
Q 041736 354 PVC----LDLQGFDDKRNCLRDKP 373 (500)
Q Consensus 354 p~~----~~L~~l~l~~N~l~~~~ 373 (500)
+.. ..|+.|++++|.+.+..
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~~~ 516 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTSSS 516 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCGGG
T ss_pred hhhhccccCCCEEECCCCccCcCC
Confidence 653 47999999999998754
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=2.4e-27 Score=253.71 Aligned_cols=246 Identities=21% Similarity=0.192 Sum_probs=199.5
Q ss_pred cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD 200 (500)
Q Consensus 121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 200 (500)
+.+|+.|+|++|.+.+..+..|+.+++|++|+|++|.+++..+..|+++++|++|+|++|.+++..+..|.++++|++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 46788888888888887777888888888888888888877777788888888888888888855555668888888888
Q ss_pred ccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccC--------------------------------------CCC
Q 041736 201 LRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIG--------------------------------------NSP 241 (500)
Q Consensus 201 Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~--------------------------------------~~~ 241 (500)
|++|.+++..+..+.. .+|++|++++|.+++.....+. ..+
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~ 233 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 233 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCC
Confidence 8888888666655544 6788888888877653211110 124
Q ss_pred cceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcc
Q 041736 242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVA 321 (500)
Q Consensus 242 L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 321 (500)
|+.|++++|.+++ +..++.+.. |++|+|++|.+++.++..|+.+++|++|+|++|.+++ ++..+..+++|+.|+|+
T Consensus 234 L~~L~L~~n~l~~--~~~l~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 234 LTILKLQHNNLTD--TAWLLNYPG-LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLS 309 (597)
T ss_dssp CCEEECCSSCCCC--CGGGGGCTT-CSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECC
T ss_pred CCEEECCCCCCCC--ChhhccCCC-CCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECC
Confidence 6777777777775 367888887 9999999999999889999999999999999999995 67777889999999999
Q ss_pred cCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC-CccCCEEEcCCCCCCC
Q 041736 322 HNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV-CLDLQGFDDKRNCLRD 371 (500)
Q Consensus 322 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-~~~L~~l~l~~N~l~~ 371 (500)
+|.++ .+|..+..+++|++|+|++|.|++.... +..|+.|++++|.+.+
T Consensus 310 ~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 310 HNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp SSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEH
T ss_pred CCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCC
Confidence 99999 7888889999999999999999876443 4479999999998764
No 29
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4e-27 Score=243.46 Aligned_cols=227 Identities=20% Similarity=0.190 Sum_probs=166.9
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL 201 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 201 (500)
.+++.|+|++|+|.+..+..|.++++|++|+|++|.|++..+..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57889999999998888888999999999999999998888888899999999999999998776777888999999999
Q ss_pred cCCcCCCCCchhhcC--CCCCeEEccCCCccCCCCCc-cC-CCCcceEEeccccccccCchhhhcccccCcEEEeccCCC
Q 041736 202 RYNEFEGKIPKALFD--KDLDAVFINNNRFSFELPDN-IG-NSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGL 277 (500)
Q Consensus 202 s~N~l~g~~p~~~~~--~~L~~L~l~~n~l~~~~p~~-~~-~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l 277 (500)
++|+++ .++...+. .+|++|++++|+..+.++.. +. ..+|++|++++|++++. + .+..+.+ |++|+|++|.+
T Consensus 155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~-L~~L~Ls~N~l 230 (452)
T 3zyi_A 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVG-LEELEMSGNHF 230 (452)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTT-CCEEECTTSCC
T ss_pred CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-ccccccc-ccEEECcCCcC
Confidence 999988 44443332 67888888875544444432 22 25677777777777643 2 4556665 77777777777
Q ss_pred CCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccC
Q 041736 278 HSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGE 352 (500)
Q Consensus 278 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 352 (500)
++..+..|.++++|++|+|++|++++..+..+..+++|++|+|++|.|++..+..+..+++|++|+|++|.+...
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 776666777777777777777777766666677777777777777777755555566677777777777766543
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=4.5e-27 Score=249.84 Aligned_cols=105 Identities=20% Similarity=0.330 Sum_probs=48.9
Q ss_pred cEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEecc
Q 041736 123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLR 202 (500)
Q Consensus 123 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 202 (500)
+++.|+|++|.+.+..+..|+++++|++|+|++|.+++..+..|.++++|++|+|++|+++ .+|.. .+++|++|+|+
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLS 129 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECC
T ss_pred CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECC
Confidence 4444555555554444444455555555555555554444444445555555555555544 33333 44455555555
Q ss_pred CCcCCC-CCchhhcC-CCCCeEEccCCCcc
Q 041736 203 YNEFEG-KIPKALFD-KDLDAVFINNNRFS 230 (500)
Q Consensus 203 ~N~l~g-~~p~~~~~-~~L~~L~l~~n~l~ 230 (500)
+|++++ .++..+.. .+|++|++++|+++
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCCccccCchHhhcccCcccEEecCCCccc
Confidence 554442 12222222 44555555555444
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=1.3e-26 Score=229.55 Aligned_cols=244 Identities=17% Similarity=0.222 Sum_probs=206.4
Q ss_pred CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCc
Q 041736 118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLK 197 (500)
Q Consensus 118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 197 (500)
...+.+|+.|+|++|.+.+..+..|+.+++|++|+|++|.++ .++..+. ++|++|++++|++++..+..+.++++|+
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 148 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI 148 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCcccc
Confidence 456789999999999999988999999999999999999998 5666554 7899999999999988888899999999
Q ss_pred EEeccCCcCCC--CCchhhcC-CCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEecc
Q 041736 198 FLDLRYNEFEG--KIPKALFD-KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTN 274 (500)
Q Consensus 198 ~L~Ls~N~l~g--~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~ 274 (500)
+|++++|.++. ..+..+.. .+|++|++++|+++. ++..+. .+|++|++++|.+++..+..|..+.+ |++|++++
T Consensus 149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~ 225 (330)
T 1xku_A 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP-PSLTELHLDGNKITKVDAASLKGLNN-LAKLGLSF 225 (330)
T ss_dssp EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC-TTCSEEECTTSCCCEECTGGGTTCTT-CCEEECCS
T ss_pred EEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc-ccCCEEECCCCcCCccCHHHhcCCCC-CCEEECCC
Confidence 99999999963 34444433 899999999999984 555544 78999999999999888899999997 99999999
Q ss_pred CCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcC------CCCCcEEEccCCc
Q 041736 275 NGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCS------LPNLRNFSFDYNF 348 (500)
Q Consensus 275 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~------l~~L~~L~Ls~N~ 348 (500)
|.+++..+..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|.|++.....|+. ...|+.|++++|.
T Consensus 226 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp SCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence 9999988888999999999999999999 88889999999999999999999765555543 3788999999999
Q ss_pred Ccc--CCCC----CccCCEEEcCCCC
Q 041736 349 FTG--ESPV----CLDLQGFDDKRNC 368 (500)
Q Consensus 349 l~g--~~p~----~~~L~~l~l~~N~ 368 (500)
+.. ..+. +..++.+++++|.
T Consensus 305 ~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 305 VQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccCccccccccceeEEEecccC
Confidence 863 2222 3357888888873
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=7e-27 Score=250.53 Aligned_cols=92 Identities=20% Similarity=0.284 Sum_probs=74.8
Q ss_pred CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCC-cCchhccCCCCC
Q 041736 118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAG-KFPYVVLGLPKL 196 (500)
Q Consensus 118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L 196 (500)
...+.+|+.|+|++|.+.+..|..|+++.+|++|+|++|.+++..+..|+++.+|++|+|++|++++ .+|..+.++++|
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 155 (606)
T 3vq2_A 76 WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155 (606)
T ss_dssp TTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTC
T ss_pred hhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCC
Confidence 4566788888888888888778888888888888888888886666778888888888888888875 568888888899
Q ss_pred cEEeccCCcCCCC
Q 041736 197 KFLDLRYNEFEGK 209 (500)
Q Consensus 197 ~~L~Ls~N~l~g~ 209 (500)
++|+|++|++++.
T Consensus 156 ~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 156 VHVDLSYNYIQTI 168 (606)
T ss_dssp CEEECCSSCCCEE
T ss_pred CEEEccCCcceec
Confidence 9888888887653
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=1.1e-26 Score=230.36 Aligned_cols=244 Identities=17% Similarity=0.226 Sum_probs=207.2
Q ss_pred CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCc
Q 041736 118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLK 197 (500)
Q Consensus 118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 197 (500)
...+.+|+.|+|++|.+++..+..|+.+++|++|+|++|.++ .++..+. ++|++|+|++|++++..+..+.++++|+
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN 150 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCC
Confidence 556789999999999999988999999999999999999998 6666554 7999999999999977777899999999
Q ss_pred EEeccCCcCCC--CCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccC
Q 041736 198 FLDLRYNEFEG--KIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNN 275 (500)
Q Consensus 198 ~L~Ls~N~l~g--~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n 275 (500)
+|++++|.++. ..+..+...+|++|++++|++++ ++..+. .+|++|++++|.+++..+..|..+.+ |++|++++|
T Consensus 151 ~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~-L~~L~L~~N 227 (332)
T 2ft3_A 151 CIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLP-ETLNELHLDHNKIQAIELEDLLRYSK-LYRLGLGHN 227 (332)
T ss_dssp EEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCSSSC-SSCSCCBCCSSCCCCCCTTSSTTCTT-CSCCBCCSS
T ss_pred EEECCCCccccCCCCcccccCCccCEEECcCCCCCc-cCcccc-CCCCEEECCCCcCCccCHHHhcCCCC-CCEEECCCC
Confidence 99999999962 44444444599999999999985 565554 68999999999999888889999997 999999999
Q ss_pred CCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcC------CCCCcEEEccCCcC
Q 041736 276 GLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCS------LPNLRNFSFDYNFF 349 (500)
Q Consensus 276 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~------l~~L~~L~Ls~N~l 349 (500)
.+++..+..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|.+++..+..+.. ..+|+.|++++|.+
T Consensus 228 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred cCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 999988889999999999999999999 88889999999999999999999765565654 36789999999998
Q ss_pred c--cCCCC----CccCCEEEcCCCC
Q 041736 350 T--GESPV----CLDLQGFDDKRNC 368 (500)
Q Consensus 350 ~--g~~p~----~~~L~~l~l~~N~ 368 (500)
. +..+. +..|+.+++++|.
T Consensus 307 ~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 307 PYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccCcccccccchhhhhhccccc
Confidence 7 33333 3468888888774
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=1.2e-26 Score=257.82 Aligned_cols=254 Identities=20% Similarity=0.227 Sum_probs=166.9
Q ss_pred CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCcc--ccCCCCCCEEeCcCCcCCCcCc-hhccCCC
Q 041736 118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRS--FNKLKLLFELDLSNNRFAGKFP-YVVLGLP 194 (500)
Q Consensus 118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~ 194 (500)
...+.+|+.|+|++|.+.+..+..|+++.+|++|+|++|.+++.++.. |.++++|++|+|++|.+++..+ ..|.+++
T Consensus 69 f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~ 148 (844)
T 3j0a_A 69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN 148 (844)
T ss_dssp TSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS
T ss_pred hcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC
Confidence 455677888888888888777778888888888888888887766554 7788888888888888876544 4677888
Q ss_pred CCcEEeccCCcCCCCCchhhcC---CCCCeEEccCCCccCCCCCccCC-------CCcceEEeccccccccCchhhhcc-
Q 041736 195 KLKFLDLRYNEFEGKIPKALFD---KDLDAVFINNNRFSFELPDNIGN-------SPVSVLVLANNKFHGCLPLSFGNM- 263 (500)
Q Consensus 195 ~L~~L~Ls~N~l~g~~p~~~~~---~~L~~L~l~~n~l~~~~p~~~~~-------~~L~~L~l~~n~l~~~~p~~l~~l- 263 (500)
+|++|+|++|.+++..+..+.. .+|+.|+++.|.+.+..+..++. ..|++|++++|.+++.++..+...
T Consensus 149 ~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l 228 (844)
T 3j0a_A 149 SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI 228 (844)
T ss_dssp SCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS
T ss_pred CCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhc
Confidence 8888888888887666655432 56666666666666555443322 236666666666555444333221
Q ss_pred ------------------------------------cccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChh
Q 041736 264 ------------------------------------SRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPD 307 (500)
Q Consensus 264 ------------------------------------~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~ 307 (500)
..+|++|++++|.+.+..+..+..+++|+.|+|++|++++..+.
T Consensus 229 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 308 (844)
T 3j0a_A 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308 (844)
T ss_dssp CSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT
T ss_pred CcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH
Confidence 01366666666666666666666666666666666666666666
Q ss_pred hhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC----CccCCEEEcCCCCCCC
Q 041736 308 TIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV----CLDLQGFDDKRNCLRD 371 (500)
Q Consensus 308 ~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~----~~~L~~l~l~~N~l~~ 371 (500)
.+..+++|++|+|++|.+++..+..+..+++|++|++++|++++..+. +.+|+.|++++|.+.+
T Consensus 309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 666666666666666666655566666666666666666666555443 2346666666666554
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=5.6e-27 Score=229.57 Aligned_cols=244 Identities=20% Similarity=0.251 Sum_probs=209.4
Q ss_pred EEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCc--CchhccCCCCCcEEecc
Q 041736 125 AGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGK--FPYVVLGLPKLKFLDLR 202 (500)
Q Consensus 125 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls 202 (500)
+.+++++++++. +|..+ .++|++|+|++|.++......|.++++|++|+|++|+++.. .+..+..+++|++|+|+
T Consensus 10 ~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 478999998866 45433 36899999999999955455689999999999999999833 36677789999999999
Q ss_pred CCcCCCCCchhhcC-CCCCeEEccCCCccCCCC-Ccc-CCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCC
Q 041736 203 YNEFEGKIPKALFD-KDLDAVFINNNRFSFELP-DNI-GNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS 279 (500)
Q Consensus 203 ~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p-~~~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~ 279 (500)
+|.++ .++..+.. .+|++|++++|++++... ..+ ...+|++|++++|.+.+..+..+..+.+ |++|++++|.+.+
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQE 164 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTT-CCEEECTTCEEGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcC-CCEEECCCCcccc
Confidence 99998 56655444 899999999999986544 233 3478999999999999988889999997 9999999999987
Q ss_pred -CCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCC--
Q 041736 280 -CLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC-- 356 (500)
Q Consensus 280 -~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~-- 356 (500)
.++..+..+++|++|+|++|++++..+..+..+++|++|+|++|.+++..+..+..+++|++|++++|++++..+..
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 57889999999999999999999888899999999999999999999877778999999999999999999987652
Q ss_pred ---ccCCEEEcCCCCCCCCC
Q 041736 357 ---LDLQGFDDKRNCLRDKP 373 (500)
Q Consensus 357 ---~~L~~l~l~~N~l~~~~ 373 (500)
..|+.|++++|.+.+..
T Consensus 245 ~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CCCTTCCEEECTTCCEECSG
T ss_pred hhhccCCEEEccCCCeeccc
Confidence 26899999999998753
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=238.53 Aligned_cols=226 Identities=21% Similarity=0.225 Sum_probs=166.2
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL 201 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 201 (500)
.+++.|+|++|.+.+..+..|.++++|++|+|++|.|++..+..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 56788888888888887788888888888888888888777788888888888888888888666667888888888888
Q ss_pred cCCcCCCCCchhhcC--CCCCeEEccCCCccCCCCC-ccC-CCCcceEEeccccccccCchhhhcccccCcEEEeccCCC
Q 041736 202 RYNEFEGKIPKALFD--KDLDAVFINNNRFSFELPD-NIG-NSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGL 277 (500)
Q Consensus 202 s~N~l~g~~p~~~~~--~~L~~L~l~~n~l~~~~p~-~~~-~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l 277 (500)
++|+++ .++...+. .+|++|++++|+..+.++. .+. ..+|++|++++|.++ .++ .+..+.+ |++|+|++|.+
T Consensus 144 ~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~-L~~L~Ls~N~l 219 (440)
T 3zyj_A 144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIK-LDELDLSGNHL 219 (440)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSS-CCEEECTTSCC
T ss_pred CCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcc-cCEEECCCCcc
Confidence 888887 44443332 6788888877554444443 222 356777777777776 333 3666665 77777777777
Q ss_pred CCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCcc
Q 041736 278 HSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTG 351 (500)
Q Consensus 278 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 351 (500)
++..+..|.++++|++|+|++|+|++..+..+..+++|++|+|++|.|++..+..+..+++|++|+|++|.+..
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 77667777777777777777777776666667777777777777777776555666677777777777777654
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=257.53 Aligned_cols=253 Identities=17% Similarity=0.187 Sum_probs=173.9
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccC-CccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTL-PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD 200 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 200 (500)
.+++.|||++|.|++..+..|.++++|++|+|++|.+.+.+ +..|.++++|++|+|++|++++..|..|.++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 56777788887777777777777777777777777555555 56677777777777777777766677777777777777
Q ss_pred ccCCcCCCCCchh--hcC-CCCCeEEccCCCccCCCC-CccC-CCCcceEEeccccccccCchhhhcc--cc--------
Q 041736 201 LRYNEFEGKIPKA--LFD-KDLDAVFINNNRFSFELP-DNIG-NSPVSVLVLANNKFHGCLPLSFGNM--SR-------- 265 (500)
Q Consensus 201 Ls~N~l~g~~p~~--~~~-~~L~~L~l~~n~l~~~~p-~~~~-~~~L~~L~l~~n~l~~~~p~~l~~l--~~-------- 265 (500)
|++|.+++.++.. +.. .+|++|++++|.+++..+ ..++ ..+|++|++++|.+.+..+..+..+ .+
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 7777777655543 222 677777777777765543 2333 3667777777777766666655554 32
Q ss_pred ---------------------cCcEEEeccCCCCCCCcccccc-------------------------------------
Q 041736 266 ---------------------TLNEVILTNNGLHSCLPEEIGL------------------------------------- 287 (500)
Q Consensus 266 ---------------------~L~~L~Ls~n~l~~~~p~~~~~------------------------------------- 287 (500)
+|++|++++|.+++.++..+..
T Consensus 184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l 263 (844)
T 3j0a_A 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263 (844)
T ss_dssp SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence 1455555555544433322211
Q ss_pred -CCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC----CccCCEE
Q 041736 288 -LKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV----CLDLQGF 362 (500)
Q Consensus 288 -l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~----~~~L~~l 362 (500)
..+|+.|+|++|.+++..+..+..+++|+.|+|++|.+++..+..|..+++|++|+|++|.+++..+. ..+|+.|
T Consensus 264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 343 (844)
T 3j0a_A 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343 (844)
T ss_dssp TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence 14577777777777766667777788888888888888877777888888888888888888776554 3368888
Q ss_pred EcCCCCCCCCCC
Q 041736 363 DDKRNCLRDKPR 374 (500)
Q Consensus 363 ~l~~N~l~~~~~ 374 (500)
++++|.+.+...
T Consensus 344 ~L~~N~i~~~~~ 355 (844)
T 3j0a_A 344 DLQKNHIAIIQD 355 (844)
T ss_dssp ECCSCCCCCCCS
T ss_pred ECCCCCCCccCh
Confidence 888888876543
No 38
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=3e-26 Score=222.09 Aligned_cols=224 Identities=18% Similarity=0.211 Sum_probs=139.8
Q ss_pred EEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCc
Q 041736 126 GIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNE 205 (500)
Q Consensus 126 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 205 (500)
.++.++++++. +|.. ..++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.
T Consensus 15 ~~~c~~~~l~~-ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQA-VPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCSS-CCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCccc-CCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 44555555443 2322 13455566666665555444555555566666666665555445555555566666666554
Q ss_pred -CCCCCchhhcC-CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCc
Q 041736 206 -FEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLP 282 (500)
Q Consensus 206 -l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p 282 (500)
++...+..+.. .+|++|++++|++++..+..+.. .+|++|++++|.+.+..+..|..+.+ |++|+|++|++++..+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN-LTHLFLHGNRISSVPE 170 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCEECT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC-ccEEECCCCcccccCH
Confidence 44222332222 45555555555555544444433 56777777777776555555677775 7888888887777555
Q ss_pred cccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCC
Q 041736 283 EEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGES 353 (500)
Q Consensus 283 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~ 353 (500)
..+..+++|++|+|++|.+++..+..+..+++|++|+|++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 56777778888888888877776777777778888888888877666666777778888888888776543
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=4e-26 Score=248.04 Aligned_cols=251 Identities=20% Similarity=0.196 Sum_probs=153.9
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL 201 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 201 (500)
.+++.|+|++|.+.+..+..|+++++|++|+|++|.+++..+..|+++++|++|+|++|++++..+..|.++++|++|+|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 46777777777777766666777777777777777777766777777777777777777777444445777777777777
Q ss_pred cCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhc--ccccCcEEEeccCCC
Q 041736 202 RYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGN--MSRTLNEVILTNNGL 277 (500)
Q Consensus 202 s~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~--l~~~L~~L~Ls~n~l 277 (500)
++|++++..+..+.. .+|++|++++|++++..+..++. .+|++|++++|.+++..+..+.. +.+ |++|++++|.+
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~-L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS-LKKLELSSNQI 183 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE-ESEEECTTCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccc-ccEEECCCCcc
Confidence 777776444344433 67777777777776665555433 55666666666666555444432 233 66666666655
Q ss_pred CCCCcc---------------------------------------------------ccccCCC--ccEEeccCcccCCC
Q 041736 278 HSCLPE---------------------------------------------------EIGLLKN--VTVFDVSYNKLMGE 304 (500)
Q Consensus 278 ~~~~p~---------------------------------------------------~~~~l~~--L~~L~Ls~n~l~~~ 304 (500)
++..+. ++..++. |++|+|++|++++.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 554443 3333332 55555555555555
Q ss_pred ChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccC-----CC--------CCccCCEEEcCCCCCCC
Q 041736 305 LPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGE-----SP--------VCLDLQGFDDKRNCLRD 371 (500)
Q Consensus 305 ~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-----~p--------~~~~L~~l~l~~N~l~~ 371 (500)
.+..++.+++|++|+|++|.+++..+..+..+++|++|++++|...+. +| .+.+|+.|++++|.+.+
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 555555555566666666655555555555555666666655544331 11 23457777777777776
Q ss_pred CC
Q 041736 372 KP 373 (500)
Q Consensus 372 ~~ 373 (500)
..
T Consensus 344 ~~ 345 (680)
T 1ziw_A 344 IK 345 (680)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 40
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.8e-28 Score=240.99 Aligned_cols=242 Identities=19% Similarity=0.168 Sum_probs=198.1
Q ss_pred cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCC-CccCCcccc-------CCCCCCEEeCcCCcCCCcCchhc--
Q 041736 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRF-CGTLPRSFN-------KLKLLFELDLSNNRFAGKFPYVV-- 190 (500)
Q Consensus 121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~p~~l~-------~l~~L~~L~Ls~n~l~~~~p~~l-- 190 (500)
..+++.|++++|.+ .+|..+... |++|+|++|.+ .+.++..+. ++++|++|+|++|++++.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 35788899999999 677766654 89999999999 456776665 79999999999999998888876
Q ss_pred cCCCCCcEEeccCCcCCCCCchhhcC------CCCCeEEccCCCccCCCCCccCC-CCcceEEecccccccc--Cchhh-
Q 041736 191 LGLPKLKFLDLRYNEFEGKIPKALFD------KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGC--LPLSF- 260 (500)
Q Consensus 191 ~~l~~L~~L~Ls~N~l~g~~p~~~~~------~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~--~p~~l- 260 (500)
..+++|++|+|++|++++. +..+.. .+|++|++++|++++..+..++. .+|++|++++|++.+. ++..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 8899999999999999976 654432 78999999999999877676655 7899999999998765 33444
Q ss_pred -hcccccCcEEEeccCCCCCC--Cc-cccccCCCccEEeccCcccCCCCh-hhhhCCCCCcEEEcccCCCCCCCchhhcC
Q 041736 261 -GNMSRTLNEVILTNNGLHSC--LP-EEIGLLKNVTVFDVSYNKLMGELP-DTIAEMTSLQQLNVAHNMLSGTVPDSVCS 335 (500)
Q Consensus 261 -~~l~~~L~~L~Ls~n~l~~~--~p-~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~N~l~g~ip~~l~~ 335 (500)
+.+.+ |++|+|++|++++. ++ ..+..+++|++|+|++|++++.++ ..+..+++|++|+|++|.|+ .+|..+.
T Consensus 197 ~~~l~~-L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 197 PLKFPT-LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp TTSCTT-CCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred hccCCC-CCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 77886 99999999999842 22 344678999999999999998764 45667899999999999998 7888776
Q ss_pred CCCCcEEEccCCcCccCCCC---CccCCEEEcCCCCCCCC
Q 041736 336 LPNLRNFSFDYNFFTGESPV---CLDLQGFDDKRNCLRDK 372 (500)
Q Consensus 336 l~~L~~L~Ls~N~l~g~~p~---~~~L~~l~l~~N~l~~~ 372 (500)
++|++|||++|+|++. |. ...|+.|++++|.+++.
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTCC
T ss_pred -CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCCC
Confidence 7999999999999987 43 33688999999998763
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=2e-26 Score=250.33 Aligned_cols=252 Identities=17% Similarity=0.232 Sum_probs=195.0
Q ss_pred cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD 200 (500)
Q Consensus 121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 200 (500)
+.+|+.|+|++|.+.+..+..|+++++|++|+|++|.+++..+..|+++++|++|+|++|.+++..+..+.++++|++|+
T Consensus 72 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 151 (680)
T 1ziw_A 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL 151 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE
T ss_pred ccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEE
Confidence 45677777777777665445677777777777777777766666677777777777777777776666777777777777
Q ss_pred ccCCcCCCCCchhhc---CCCCCeEEccCCCccCCCCCccCC----------------------------CCcceEEecc
Q 041736 201 LRYNEFEGKIPKALF---DKDLDAVFINNNRFSFELPDNIGN----------------------------SPVSVLVLAN 249 (500)
Q Consensus 201 Ls~N~l~g~~p~~~~---~~~L~~L~l~~n~l~~~~p~~~~~----------------------------~~L~~L~l~~ 249 (500)
+++|++++..+..+. ..+|++|++++|++++..+..+.. .+|+.|++++
T Consensus 152 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~ 231 (680)
T 1ziw_A 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231 (680)
T ss_dssp CCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTT
T ss_pred ccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccC
Confidence 777777755554332 267888888888777665543321 4577888888
Q ss_pred ccccccCchhhhcccc-cCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCC-
Q 041736 250 NKFHGCLPLSFGNMSR-TLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSG- 327 (500)
Q Consensus 250 n~l~~~~p~~l~~l~~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g- 327 (500)
|.+.+..+..|..+.. +|++|++++|++++..+..++.+++|++|+|++|++++..+..+..+.+|++|+|++|...+
T Consensus 232 n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 311 (680)
T 1ziw_A 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311 (680)
T ss_dssp SCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-
T ss_pred CcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcc
Confidence 8888877778877642 39999999999999888899999999999999999999999999999999999999887664
Q ss_pred ----CCch----hhcCCCCCcEEEccCCcCccCCCC----CccCCEEEcCCCCCCCC
Q 041736 328 ----TVPD----SVCSLPNLRNFSFDYNFFTGESPV----CLDLQGFDDKRNCLRDK 372 (500)
Q Consensus 328 ----~ip~----~l~~l~~L~~L~Ls~N~l~g~~p~----~~~L~~l~l~~N~l~~~ 372 (500)
.+|. .+..+++|++|++++|.+++..+. +.+|+.|++++|.+...
T Consensus 312 ~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~ 368 (680)
T 1ziw_A 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368 (680)
T ss_dssp -----CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCC
T ss_pred cccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhh
Confidence 2333 678899999999999999987665 44799999999987554
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=1.7e-26 Score=244.59 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=59.2
Q ss_pred cccccCcEEEeccCCCCCCCc---cccccCCCccEEeccCcccCCCCh--hhhhCCCCCcEEEcccCCCCCCCchhhcCC
Q 041736 262 NMSRTLNEVILTNNGLHSCLP---EEIGLLKNVTVFDVSYNKLMGELP--DTIAEMTSLQQLNVAHNMLSGTVPDSVCSL 336 (500)
Q Consensus 262 ~l~~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l 336 (500)
.+.+ |++|++++|.+++.++ ..++.+++|++|+|++|++++..+ ..+..+++|++|+|++|.++ .+|..+..+
T Consensus 332 ~l~~-L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~ 409 (549)
T 2z81_A 332 HLKS-LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409 (549)
T ss_dssp HCTT-CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC
T ss_pred cCcc-ccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc
Confidence 3443 6666666666655442 224555666666666666653221 33556666666666666666 455555566
Q ss_pred CCCcEEEccCCcCccCCCCC-ccCCEEEcCCCCCCCC
Q 041736 337 PNLRNFSFDYNFFTGESPVC-LDLQGFDDKRNCLRDK 372 (500)
Q Consensus 337 ~~L~~L~Ls~N~l~g~~p~~-~~L~~l~l~~N~l~~~ 372 (500)
++|++|++++|.+++..... ..|+.|++++|.+++.
T Consensus 410 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~ 446 (549)
T 2z81_A 410 EKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF 446 (549)
T ss_dssp TTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCC
T ss_pred ccccEEECCCCCcccccchhcCCceEEECCCCChhhh
Confidence 66666666666654322111 2455555555555543
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=5.7e-26 Score=234.85 Aligned_cols=240 Identities=17% Similarity=0.170 Sum_probs=203.3
Q ss_pred EEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCc
Q 041736 126 GIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNE 205 (500)
Q Consensus 126 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 205 (500)
.++.++.+++. +|..+. .+|++|+|++|.|++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|+
T Consensus 58 ~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 58 KVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 34555555544 554443 689999999999998889999999999999999999998888999999999999999999
Q ss_pred CCCCCchhhcC--CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCc-hhhhcccccCcEEEeccCCCCCCC
Q 041736 206 FEGKIPKALFD--KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLP-LSFGNMSRTLNEVILTNNGLHSCL 281 (500)
Q Consensus 206 l~g~~p~~~~~--~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p-~~l~~l~~~L~~L~Ls~n~l~~~~ 281 (500)
++ .++...+. .+|++|++++|+++...+..+.. .+|++|++++|...+.++ ..|..+.+ |++|+|++|++++.
T Consensus 135 l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~-L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 135 LT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN-LKYLNLGMCNIKDM- 211 (452)
T ss_dssp CS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT-CCEEECTTSCCSSC-
T ss_pred CC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC-CCEEECCCCccccc-
Confidence 99 45444333 89999999999998654444543 789999999965544554 46888887 99999999999984
Q ss_pred ccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCC----c
Q 041736 282 PEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC----L 357 (500)
Q Consensus 282 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~----~ 357 (500)
+ .+..+++|++|+|++|+|++..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++|+|++..+.. .
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 4 5889999999999999999988999999999999999999999888899999999999999999999776653 3
Q ss_pred cCCEEEcCCCCCCCC
Q 041736 358 DLQGFDDKRNCLRDK 372 (500)
Q Consensus 358 ~L~~l~l~~N~l~~~ 372 (500)
.|+.|++++|.+...
T Consensus 291 ~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 291 YLVELHLHHNPWNCD 305 (452)
T ss_dssp TCCEEECCSSCEECS
T ss_pred CCCEEEccCCCcCCC
Confidence 699999999977543
No 44
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=8.1e-26 Score=232.87 Aligned_cols=240 Identities=19% Similarity=0.205 Sum_probs=204.3
Q ss_pred EEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCC
Q 041736 125 AGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYN 204 (500)
Q Consensus 125 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N 204 (500)
..++.++++++. +|..+. .++++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 46 ~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 345666666654 555443 78999999999999888899999999999999999999888889999999999999999
Q ss_pred cCCCCCchh-hcC-CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCc-hhhhcccccCcEEEeccCCCCCC
Q 041736 205 EFEGKIPKA-LFD-KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLP-LSFGNMSRTLNEVILTNNGLHSC 280 (500)
Q Consensus 205 ~l~g~~p~~-~~~-~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p-~~l~~l~~~L~~L~Ls~n~l~~~ 280 (500)
+++ .++.. +.. .+|++|++++|+++...+..+.. .+|++|++++|...+.++ ..|.++.+ |++|+|++|+++.
T Consensus 123 ~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~-L~~L~L~~n~l~~- 199 (440)
T 3zyj_A 123 RLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN-LRYLNLAMCNLRE- 199 (440)
T ss_dssp CCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS-CCEEECTTSCCSS-
T ss_pred cCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc-cCeecCCCCcCcc-
Confidence 999 45543 333 89999999999998655545544 789999999965544554 47888887 9999999999997
Q ss_pred CccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCC----
Q 041736 281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC---- 356 (500)
Q Consensus 281 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~---- 356 (500)
++ .+..+++|++|+|++|+|++..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++|+|++..+..
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 44 5889999999999999999888999999999999999999999888889999999999999999999876653
Q ss_pred ccCCEEEcCCCCCCC
Q 041736 357 LDLQGFDDKRNCLRD 371 (500)
Q Consensus 357 ~~L~~l~l~~N~l~~ 371 (500)
..|+.|++++|.+..
T Consensus 279 ~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 279 HHLERIHLHHNPWNC 293 (440)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred cCCCEEEcCCCCccC
Confidence 468999999998754
No 45
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.8e-26 Score=223.63 Aligned_cols=233 Identities=18% Similarity=0.211 Sum_probs=199.7
Q ss_pred cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCc-CCCcCchhccCCCCCcEE
Q 041736 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNR-FAGKFPYVVLGLPKLKFL 199 (500)
Q Consensus 121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L 199 (500)
..+++.|+|++|.+.+..+..|..+++|++|+|++|.+++..+..|.++++|++|+|++|. +....+..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4689999999999999888889999999999999999998889999999999999999997 876668899999999999
Q ss_pred eccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCC
Q 041736 200 DLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGL 277 (500)
Q Consensus 200 ~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l 277 (500)
+|++|++++..+..+.. .+|++|++++|++++..+..++. .+|++|++++|.+++..+..|..+.+ |++|++++|.+
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS-LDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT-CCEEECCSSCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccc-cCEEECCCCcc
Confidence 99999999766655554 89999999999999766665544 78999999999999776677999987 99999999999
Q ss_pred CCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC
Q 041736 278 HSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV 355 (500)
Q Consensus 278 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~ 355 (500)
++..+..+..+++|++|+|++|++++..+..+..+++|++|+|++|.+....... .....++.+..+.|.+.+..|.
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCch
Confidence 9988999999999999999999999877788999999999999999998654321 0111244455667777766664
No 46
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.3e-25 Score=216.03 Aligned_cols=220 Identities=20% Similarity=0.293 Sum_probs=170.6
Q ss_pred CCCCCcCceecCCCCCCCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCc
Q 041736 102 CYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNR 181 (500)
Q Consensus 102 ~~~c~~~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 181 (500)
.++|.|.|+.|.+. .+++.+++++++++. +|..+. .+|++|+|++|.+++..+..|.++++|++|+|++|+
T Consensus 2 ~~~C~~~~~~C~c~------~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 72 (270)
T 2o6q_A 2 EALCKKDGGVCSCN------NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72 (270)
T ss_dssp CCCBGGGTCSBEEE------TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC
T ss_pred CccCCCCCCCCEeC------CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc
Confidence 37899999999763 346789999999986 565443 689999999999997777789999999999999999
Q ss_pred CCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhh
Q 041736 182 FAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFG 261 (500)
Q Consensus 182 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~ 261 (500)
++...+..|.++++|++|+|++|++++ ++...+. ...+|++|++++|.+++..+..|.
T Consensus 73 l~~i~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~---------------------~l~~L~~L~l~~n~l~~~~~~~~~ 130 (270)
T 2o6q_A 73 LQTLPAGIFKELKNLETLWVTDNKLQA-LPIGVFD---------------------QLVNLAELRLDRNQLKSLPPRVFD 130 (270)
T ss_dssp CSCCCTTTTSSCTTCCEEECCSSCCCC-CCTTTTT---------------------TCSSCCEEECCSSCCCCCCTTTTT
T ss_pred cCeeChhhhcCCCCCCEEECCCCcCCc-CCHhHcc---------------------cccCCCEEECCCCccCeeCHHHhC
Confidence 996666677889999999999999883 3322211 113455555555555555555667
Q ss_pred cccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcE
Q 041736 262 NMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRN 341 (500)
Q Consensus 262 ~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~ 341 (500)
.+.+ |++|+|++|.+++..+..+..+++|++|+|++|++++..+..+..+++|++|+|++|.+++..+..+..+++|++
T Consensus 131 ~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 209 (270)
T 2o6q_A 131 SLTK-LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209 (270)
T ss_dssp TCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCcC-CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCE
Confidence 7776 888888888888866666888888888888888888766666888888888888888888655566788888888
Q ss_pred EEccCCcCccCC
Q 041736 342 FSFDYNFFTGES 353 (500)
Q Consensus 342 L~Ls~N~l~g~~ 353 (500)
|+|++|.+...-
T Consensus 210 L~l~~N~~~c~c 221 (270)
T 2o6q_A 210 LQLQENPWDCTC 221 (270)
T ss_dssp EECCSSCBCCSS
T ss_pred EEecCCCeeCCC
Confidence 888888876553
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=1.3e-25 Score=241.30 Aligned_cols=131 Identities=16% Similarity=0.156 Sum_probs=84.2
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL 201 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 201 (500)
.++++|||++|.|++..+..|.++++|++|+|++|.|++..+.+|.++++|++|+|++|+|++..+..|.++++|++|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 35777777777777766667777777777777777777666667777777777777777777655566777777777777
Q ss_pred cCCcCCCCCchhhcC-CCCCeEEccCCCccC-CCCCccCC-CCcceEEeccccc
Q 041736 202 RYNEFEGKIPKALFD-KDLDAVFINNNRFSF-ELPDNIGN-SPVSVLVLANNKF 252 (500)
Q Consensus 202 s~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~-~~p~~~~~-~~L~~L~l~~n~l 252 (500)
++|++++..+..+.. .+|++|++++|++++ .++..++. .+|++|++++|.+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 777776432222222 566666666666543 23333332 4455555554443
No 48
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.5e-25 Score=238.27 Aligned_cols=131 Identities=20% Similarity=0.220 Sum_probs=66.3
Q ss_pred CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCc-cccccCCCccEEeccCcccCCCChhhhhCCCCCcEE
Q 041736 240 SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLP-EEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQL 318 (500)
Q Consensus 240 ~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 318 (500)
.+|++|++++|.+.+..+ .+..+.+ |++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+.++++|++|
T Consensus 373 ~~L~~L~l~~n~l~~~~~-~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 450 (570)
T 2z63_A 373 TSLKYLDLSFNGVITMSS-NFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450 (570)
T ss_dssp SCCCEEECCSCSEEEEEE-EEETCTT-CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred CccCEEECCCCccccccc-cccccCC-CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence 345666666666654322 2555554 5555555555554433 344555555555555555555445555555555555
Q ss_pred EcccCCCC-CCCchhhcCCCCCcEEEccCCcCccCCCCC----ccCCEEEcCCCCCCCC
Q 041736 319 NVAHNMLS-GTVPDSVCSLPNLRNFSFDYNFFTGESPVC----LDLQGFDDKRNCLRDK 372 (500)
Q Consensus 319 ~L~~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~----~~L~~l~l~~N~l~~~ 372 (500)
+|++|.++ +.+|..+..+++|++|++++|++++..+.. .+|+.|++++|.+++.
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 509 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC
Confidence 55555554 344444555555555555555555443321 2345555555555443
No 49
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=3.5e-26 Score=245.13 Aligned_cols=246 Identities=18% Similarity=0.168 Sum_probs=120.3
Q ss_pred cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCc--------------------cccCCCCCCEEeCcCC
Q 041736 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPR--------------------SFNKLKLLFELDLSNN 180 (500)
Q Consensus 121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--------------------~l~~l~~L~~L~Ls~n 180 (500)
+.+++.|++++|.+.. ++ .+..+++|++|++++|.+ +.+|. .+..+++|++|+|++|
T Consensus 284 l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n 360 (606)
T 3vq2_A 284 LANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN 360 (606)
T ss_dssp GTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSS
T ss_pred CCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCC
Confidence 3445555555555533 22 444555555555555555 34442 2344445555555555
Q ss_pred cCCCc--CchhccCCCCCcEEeccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCC-CccC-CCCcceEEecccccccc
Q 041736 181 RFAGK--FPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELP-DNIG-NSPVSVLVLANNKFHGC 255 (500)
Q Consensus 181 ~l~~~--~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p-~~~~-~~~L~~L~l~~n~l~~~ 255 (500)
++++. ++..+..+++|++|+|++|.+++ ++..+.. .+|++|++++|++.+..+ ..+. ..+|++|++++|.+.+.
T Consensus 361 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 439 (606)
T 3vq2_A 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439 (606)
T ss_dssp CEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred ccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc
Confidence 54433 24444455555555555555442 2222222 455555555555554443 2222 24455555555555555
Q ss_pred CchhhhcccccCcEEEeccCCCCC-CCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhc
Q 041736 256 LPLSFGNMSRTLNEVILTNNGLHS-CLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVC 334 (500)
Q Consensus 256 ~p~~l~~l~~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~ 334 (500)
.+..+..+.+ |++|++++|.+++ .++..++.+++|++|+|++|++++..+..+..+++|++|+|++|.+++.+|..+.
T Consensus 440 ~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 518 (606)
T 3vq2_A 440 FDGIFLGLTS-LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518 (606)
T ss_dssp CTTTTTTCTT-CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT
T ss_pred chhhhcCCCC-CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHcc
Confidence 5555555554 5555555555554 2444555555555555555555555555555555555555555555555455555
Q ss_pred CCCCCcEEEccCCcCccCCCC---Cc-cCCEEEcCCCCCCC
Q 041736 335 SLPNLRNFSFDYNFFTGESPV---CL-DLQGFDDKRNCLRD 371 (500)
Q Consensus 335 ~l~~L~~L~Ls~N~l~g~~p~---~~-~L~~l~l~~N~l~~ 371 (500)
.+++|++|++++|+|+..... .. .|+.|++++|.+.+
T Consensus 519 ~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 519 QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp TCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred CCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCccc
Confidence 555555555555555522221 11 25555555555543
No 50
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=5.3e-27 Score=230.54 Aligned_cols=222 Identities=18% Similarity=0.211 Sum_probs=187.6
Q ss_pred EEEEECCCCCC-cccCchhhc-------CCCCCCEEEcCCCCCCccCCccc--cCCCCCCEEeCcCCcCCCcCchhccCC
Q 041736 124 VAGIDLNHGDI-ASYLPEELG-------LLADIALFHVNTNRFCGTLPRSF--NKLKLLFELDLSNNRFAGKFPYVVLGL 193 (500)
Q Consensus 124 l~~L~L~~n~l-~~~~p~~l~-------~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~l~~l 193 (500)
++.|+|++|.+ .+.++..+. ++++|++|+|++|.+++.+|..+ ..+++|++|+|++|++++. +..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 78899999999 556777665 79999999999999999999886 8999999999999999976 7777776
Q ss_pred -----CCCcEEeccCCcCCCCCchhhcC-CCCCeEEccCCCccCCC--CCcc---CCCCcceEEeccccccc--cCc-hh
Q 041736 194 -----PKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFEL--PDNI---GNSPVSVLVLANNKFHG--CLP-LS 259 (500)
Q Consensus 194 -----~~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~--p~~~---~~~~L~~L~l~~n~l~~--~~p-~~ 259 (500)
++|++|+|++|++++..+..+.. ++|++|++++|++.+.+ +..+ ...+|++|++++|.+++ .++ ..
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 89999999999999766666655 89999999999987642 2222 34789999999999983 223 33
Q ss_pred hhcccccCcEEEeccCCCCCCCc-cccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCC
Q 041736 260 FGNMSRTLNEVILTNNGLHSCLP-EEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPN 338 (500)
Q Consensus 260 l~~l~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~ 338 (500)
+..+.+ |++|+|++|.+++.++ ..+..+++|++|+|++|+|+ .+|..+. ++|++|+|++|+|++. |. +..+++
T Consensus 224 ~~~l~~-L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~ 297 (312)
T 1wwl_A 224 AAARVQ-LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQ 297 (312)
T ss_dssp HHTTCC-CSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCE
T ss_pred HhcCCC-CCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCC
Confidence 346676 9999999999999775 56677899999999999999 7888776 8999999999999966 65 899999
Q ss_pred CcEEEccCCcCccC
Q 041736 339 LRNFSFDYNFFTGE 352 (500)
Q Consensus 339 L~~L~Ls~N~l~g~ 352 (500)
|++|++++|.|++.
T Consensus 298 L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 298 VGNLSLKGNPFLDS 311 (312)
T ss_dssp EEEEECTTCTTTCC
T ss_pred CCEEeccCCCCCCC
Confidence 99999999999864
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=6.5e-25 Score=235.91 Aligned_cols=113 Identities=18% Similarity=0.217 Sum_probs=83.6
Q ss_pred CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCc
Q 041736 118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLK 197 (500)
Q Consensus 118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 197 (500)
+.++++|+.|||++|.|++..+..|.++++|++|+|++|+|++..+..|.++++|++|+|++|++++..+..|+++++|+
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~ 151 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 151 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccC
Confidence 45667888888888888877777788888888888888888866666788888888888888888866666677888888
Q ss_pred EEeccCCcCCC-CCchhhcC-CCCCeEEccCCCcc
Q 041736 198 FLDLRYNEFEG-KIPKALFD-KDLDAVFINNNRFS 230 (500)
Q Consensus 198 ~L~Ls~N~l~g-~~p~~~~~-~~L~~L~l~~n~l~ 230 (500)
+|+|++|.+++ .++..+.. .+|++|++++|+++
T Consensus 152 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 152 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred eeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 88888887764 23444333 56666666666543
No 52
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.1e-24 Score=217.02 Aligned_cols=241 Identities=17% Similarity=0.264 Sum_probs=178.1
Q ss_pred CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCc
Q 041736 118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLK 197 (500)
Q Consensus 118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 197 (500)
...+.+|+.|+|++|.+.+. ..+..+++|++|++++|.+++. +. +..+++|++|++++|.....++ .+..+++|+
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~ 158 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLN 158 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCC
T ss_pred hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCc
Confidence 44678899999999998773 4688999999999999999854 33 8889999999999996664444 378888999
Q ss_pred EEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCC
Q 041736 198 FLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGL 277 (500)
Q Consensus 198 ~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l 277 (500)
+|++++|.+.+ ++......+|++|++++|.+.+. +......+|++|++++|.+.+..+ +..+.+ |++|++++|.+
T Consensus 159 ~L~l~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~-L~~L~l~~n~l 233 (347)
T 4fmz_A 159 YLTVTESKVKD-VTPIANLTDLYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQITDITP--VANMTR-LNSLKIGNNKI 233 (347)
T ss_dssp EEECCSSCCCC-CGGGGGCTTCSEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCCGG--GGGCTT-CCEEECCSSCC
T ss_pred EEEecCCCcCC-chhhccCCCCCEEEccCCccccc-ccccCCCccceeecccCCCCCCch--hhcCCc-CCEEEccCCcc
Confidence 99999998874 33333347888888888888753 333344678888888887775433 666765 88888888888
Q ss_pred CCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC--
Q 041736 278 HSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV-- 355 (500)
Q Consensus 278 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-- 355 (500)
++..+ +..+++|++|++++|.+++ + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+.
T Consensus 234 ~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l 307 (347)
T 4fmz_A 234 TDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVI 307 (347)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred CCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHh
Confidence 76433 7777888888888888774 3 3577777888888888877753 3467777888888888877766543
Q ss_pred --CccCCEEEcCCCCCCCCCC
Q 041736 356 --CLDLQGFDDKRNCLRDKPR 374 (500)
Q Consensus 356 --~~~L~~l~l~~N~l~~~~~ 374 (500)
+.+|+.|++++|.+.+..+
T Consensus 308 ~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp HTCTTCSEEECCSSSCCCCGG
T ss_pred hccccCCEEEccCCccccccC
Confidence 4467788888887776543
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=4.4e-26 Score=224.50 Aligned_cols=214 Identities=20% Similarity=0.232 Sum_probs=95.6
Q ss_pred cEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEecc
Q 041736 123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLR 202 (500)
Q Consensus 123 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 202 (500)
+|+.|+|++|.+.+..+..|..+++|++|+|++|.+++..+ +..+++|++|+|++|++++. ...++|++|+++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEEECC
Confidence 44555555555554444445555555555555555543332 44455555555555554421 122445555555
Q ss_pred CCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhh-cccccCcEEEeccCCCCCC
Q 041736 203 YNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFG-NMSRTLNEVILTNNGLHSC 280 (500)
Q Consensus 203 ~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~-~l~~~L~~L~Ls~n~l~~~ 280 (500)
+|++++..+.. ..+|++|++++|++++..+..++. .+|++|++++|.+.+..+..+. .+.. |++|+|++|.+++.
T Consensus 108 ~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~-L~~L~L~~N~l~~~ 184 (317)
T 3o53_A 108 NNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT-LEHLNLQYNFIYDV 184 (317)
T ss_dssp SSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT-CCEEECTTSCCCEE
T ss_pred CCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc-CCEEECCCCcCccc
Confidence 55544222211 134455555555544433323222 3444555555544444333332 3333 45555555544442
Q ss_pred CccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCc
Q 041736 281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFT 350 (500)
Q Consensus 281 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 350 (500)
+ ....+++|++|+|++|++++ ++..+..+++|++|+|++|.++ .+|..+..+++|++|++++|.++
T Consensus 185 -~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 185 -K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp -E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred -c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 1 12234445555555554442 2223444444555555555444 33444444444555555554444
No 54
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.5e-25 Score=233.44 Aligned_cols=216 Identities=19% Similarity=0.209 Sum_probs=168.4
Q ss_pred cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD 200 (500)
Q Consensus 121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 200 (500)
..+|+.|+|++|.+.+..+..|+.+++|++|+|++|.+++..+ |..+++|++|+|++|.+++.. ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 3578899999999988878888899999999999999886655 888889999999999888432 237889999
Q ss_pred ccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhh-cccccCcEEEeccCCCC
Q 041736 201 LRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFG-NMSRTLNEVILTNNGLH 278 (500)
Q Consensus 201 Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~-~l~~~L~~L~Ls~n~l~ 278 (500)
|++|.+++..+.. ..+|++|++++|.+++..+..++. .+|++|+|++|.+++.++..+. .+.. |++|+|++|.++
T Consensus 106 L~~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~-L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT-LEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEECC--CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT-CCEEECTTSCCC
T ss_pred CcCCcCCCCCccc--cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc-ccEEecCCCccc
Confidence 9999888654432 267888888888888776666554 6788888888888887777776 5665 888888888888
Q ss_pred CCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCc
Q 041736 279 SCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFT 350 (500)
Q Consensus 279 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 350 (500)
+. ..+..+++|++|+|++|.|++.. ..+..+++|+.|+|++|.|++ +|..+..+++|+.|++++|.+.
T Consensus 183 ~~--~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 183 DV--KGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EE--ECCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred cc--cccccCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 75 23445788888888888888544 447788888888888888884 6777778888888888888877
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.7e-25 Score=220.23 Aligned_cols=237 Identities=17% Similarity=0.148 Sum_probs=202.4
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL 201 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 201 (500)
.+++.++++.+.+.......+..+++|++|+|++|.+++..+..|.++++|++|+|++|++++..+ +..+++|++|+|
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 457788899988877666677788899999999999998888899999999999999999997655 899999999999
Q ss_pred cCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCC
Q 041736 202 RYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCL 281 (500)
Q Consensus 202 s~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~ 281 (500)
++|++++ ++ ...+|++|++++|++++..+.. ..+|++|++++|.+++..+..++.+.+ |++|++++|.+++..
T Consensus 88 s~n~l~~-l~---~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 88 NNNYVQE-LL---VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVN 160 (317)
T ss_dssp CSSEEEE-EE---ECTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSS-EEEEECTTSCCCEEE
T ss_pred cCCcccc-cc---CCCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCC-CCEEECCCCCCCccc
Confidence 9999883 33 2289999999999998755443 367999999999999887888999987 999999999999977
Q ss_pred cccc-ccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC---Cc
Q 041736 282 PEEI-GLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV---CL 357 (500)
Q Consensus 282 p~~~-~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~---~~ 357 (500)
+..+ ..+++|++|+|++|.+++. + ....+++|++|+|++|.+++ ++..+..+++|++|++++|++++.... ..
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~ 237 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCT
T ss_pred HHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhcCC
Confidence 7766 4799999999999999854 3 33458999999999999995 555688999999999999999864332 34
Q ss_pred cCCEEEcCCCCCC
Q 041736 358 DLQGFDDKRNCLR 370 (500)
Q Consensus 358 ~L~~l~l~~N~l~ 370 (500)
.|+.|++++|.+.
T Consensus 238 ~L~~L~l~~N~~~ 250 (317)
T 3o53_A 238 NLEHFDLRGNGFH 250 (317)
T ss_dssp TCCEEECTTCCCB
T ss_pred CCCEEEccCCCcc
Confidence 7999999999987
No 56
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=8e-24 Score=210.81 Aligned_cols=238 Identities=17% Similarity=0.226 Sum_probs=188.0
Q ss_pred CcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEE
Q 041736 120 SIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFL 199 (500)
Q Consensus 120 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 199 (500)
.+.+|+.|++++|.+++. +. +..+++|++|++++|.+++ + ..+.++++|++|+|++|++++. +. +..+++|++|
T Consensus 64 ~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L 137 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSL 137 (347)
T ss_dssp GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEE
T ss_pred hcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEE
Confidence 457899999999988764 33 8889999999999998885 4 3688899999999999998854 33 8889999999
Q ss_pred eccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCC
Q 041736 200 DLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS 279 (500)
Q Consensus 200 ~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~ 279 (500)
++++|.....++......+|++|++++|.+.+..+ .....+|++|++++|.+.+..+ +..+.+ |++|++++|.+.+
T Consensus 138 ~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~-L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 138 NLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTS-LHYFTAYVNQITD 213 (347)
T ss_dssp ECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTT-CCEEECCSSCCCC
T ss_pred ECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc--ccCCCc-cceeecccCCCCC
Confidence 99999766566654444889999999998875433 3344789999999998885433 777776 9999999999887
Q ss_pred CCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCC--CCCc
Q 041736 280 CLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGES--PVCL 357 (500)
Q Consensus 280 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~--p~~~ 357 (500)
..+ +..+++|++|++++|++++. +. +..+++|++|++++|.+++. ..+..+++|++|++++|.+++.. ..+.
T Consensus 214 ~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~l~ 287 (347)
T 4fmz_A 214 ITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDISVLNNLS 287 (347)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred Cch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCChhhcCCC
Confidence 543 78889999999999999854 33 88889999999999988853 46888899999999999888752 1244
Q ss_pred cCCEEEcCCCCCCCCC
Q 041736 358 DLQGFDDKRNCLRDKP 373 (500)
Q Consensus 358 ~L~~l~l~~N~l~~~~ 373 (500)
+|+.|++++|.+.+..
T Consensus 288 ~L~~L~L~~n~l~~~~ 303 (347)
T 4fmz_A 288 QLNSLFLNNNQLGNED 303 (347)
T ss_dssp TCSEEECCSSCCCGGG
T ss_pred CCCEEECcCCcCCCcC
Confidence 7889999999887643
No 57
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=6.8e-24 Score=219.17 Aligned_cols=225 Identities=17% Similarity=0.157 Sum_probs=122.5
Q ss_pred cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD 200 (500)
Q Consensus 121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 200 (500)
+.+|+.|++++|.+++. + .++.+++|++|+|++|.+++. + ++.+++|++|+|++|++++. + +.++++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 34566666666666553 3 456666666666666666643 2 55666666666666666643 2 55666666666
Q ss_pred ccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCC
Q 041736 201 LRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC 280 (500)
Q Consensus 201 Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~ 280 (500)
+++|++++ ++ .....+|++|++++|++++. + .-...+|++|++++|...+.+ .++.+.+ |++|++++|++++
T Consensus 113 L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~l-~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~-L~~L~ls~n~l~~- 184 (457)
T 3bz5_A 113 CDTNKLTK-LD-VSQNPLLTYLNCARNTLTEI-D-VSHNTQLTELDCHLNKKITKL--DVTPQTQ-LTTLDCSFNKITE- 184 (457)
T ss_dssp CCSSCCSC-CC-CTTCTTCCEEECTTSCCSCC-C-CTTCTTCCEEECTTCSCCCCC--CCTTCTT-CCEEECCSSCCCC-
T ss_pred CCCCcCCe-ec-CCCCCcCCEEECCCCcccee-c-cccCCcCCEEECCCCCccccc--ccccCCc-CCEEECCCCccce-
Confidence 66666654 32 11125666666666666542 1 222245666666666444444 3455554 6666666666655
Q ss_pred CccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC-CccC
Q 041736 281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV-CLDL 359 (500)
Q Consensus 281 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-~~~L 359 (500)
++ ++.+++|+.|++++|++++. .++.+++|++|+|++|++++ +| +..+++|++|++++|++++.... +..|
T Consensus 185 l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L 256 (457)
T 3bz5_A 185 LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKL 256 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTC
T ss_pred ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCC
Confidence 22 55556666666666666543 25555666666666666654 33 55555666666666666554332 2234
Q ss_pred CEEEcCCCCC
Q 041736 360 QGFDDKRNCL 369 (500)
Q Consensus 360 ~~l~l~~N~l 369 (500)
+.|++++|.+
T Consensus 257 ~~L~l~~n~L 266 (457)
T 3bz5_A 257 TTLHCIQTDL 266 (457)
T ss_dssp CEEECTTCCC
T ss_pred CEEeccCCCC
Confidence 4444443333
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=6.3e-25 Score=219.53 Aligned_cols=234 Identities=18% Similarity=0.195 Sum_probs=194.5
Q ss_pred CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCc-hhccCCCCC
Q 041736 118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFP-YVVLGLPKL 196 (500)
Q Consensus 118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L 196 (500)
...+.+|+.|+|++|.+++..+..|+++++|++|+|++|.+++..+..|.++++|++|+|++|++++... ..+..+++|
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L 151 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCC
Confidence 4567899999999999999888899999999999999999996655569999999999999999995433 478999999
Q ss_pred cEEeccCCc-CCCCCchhhcC-CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchh-hhcccccCcEEEe
Q 041736 197 KFLDLRYNE-FEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLS-FGNMSRTLNEVIL 272 (500)
Q Consensus 197 ~~L~Ls~N~-l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~-l~~l~~~L~~L~L 272 (500)
++|++++|+ +.+..+..+.. .+|++|++++|++++..+..++. .+|++|++++|.+.. ++.. +..+.+ |++|++
T Consensus 152 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~-L~~L~L 229 (353)
T 2z80_A 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSS-VECLEL 229 (353)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTT-EEEEEE
T ss_pred cEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc-chhhhhhhccc-ccEEEC
Confidence 999999995 55333334433 79999999999999887877766 679999999999864 4444 445665 999999
Q ss_pred ccCCCCCCCccccc---cCCCccEEeccCcccCC----CChhhhhCCCCCcEEEcccCCCCCCCchh-hcCCCCCcEEEc
Q 041736 273 TNNGLHSCLPEEIG---LLKNVTVFDVSYNKLMG----ELPDTIAEMTSLQQLNVAHNMLSGTVPDS-VCSLPNLRNFSF 344 (500)
Q Consensus 273 s~n~l~~~~p~~~~---~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~N~l~g~ip~~-l~~l~~L~~L~L 344 (500)
++|.+++.....+. ....++.++|+++.+++ .+|..+..+++|++|+|++|.++ .+|.. +..+++|++|++
T Consensus 230 ~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp ESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEe
Confidence 99999986554433 46678889999998876 47788999999999999999999 66665 589999999999
Q ss_pred cCCcCccCCC
Q 041736 345 DYNFFTGESP 354 (500)
Q Consensus 345 s~N~l~g~~p 354 (500)
++|.+++..+
T Consensus 309 ~~N~~~~~~~ 318 (353)
T 2z80_A 309 HTNPWDCSCP 318 (353)
T ss_dssp CSSCBCCCHH
T ss_pred eCCCccCcCC
Confidence 9999998765
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.7e-24 Score=207.32 Aligned_cols=209 Identities=17% Similarity=0.181 Sum_probs=144.6
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL 201 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 201 (500)
.+++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35677777777776666556777777777777777777655556777777777777777777666666777777777777
Q ss_pred cCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccc-cCchhhhcccccCcEEEeccCCCCCC
Q 041736 202 RYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHG-CLPLSFGNMSRTLNEVILTNNGLHSC 280 (500)
Q Consensus 202 s~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~-~~p~~l~~l~~~L~~L~Ls~n~l~~~ 280 (500)
++|++++..+..+. ...+|++|++++|.+.+ .++..+..+.+ |++|++++|++++.
T Consensus 108 ~~n~l~~~~~~~~~----------------------~l~~L~~L~l~~n~l~~~~l~~~~~~l~~-L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 108 VETNLASLENFPIG----------------------HLKTLKELNVAHNLIQSFKLPEYFSNLTN-LEHLDLSSNKIQSI 164 (276)
T ss_dssp TTSCCCCSTTCCCT----------------------TCTTCCEEECCSSCCCCCCCCGGGGGCTT-CCEEECCSSCCCEE
T ss_pred CCCCccccCchhcc----------------------cCCCCCEEECcCCccceecCchhhccCCC-CCEEECCCCCCCcC
Confidence 77766632221111 12456666666666654 25677777776 88888888888877
Q ss_pred CccccccCCCcc----EEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCC
Q 041736 281 LPEEIGLLKNVT----VFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESP 354 (500)
Q Consensus 281 ~p~~~~~l~~L~----~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p 354 (500)
.+..+..+.+|+ +|++++|.+++..+..+ ...+|++|+|++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 666777666666 78888888885444433 34578888888888886655667788888888888888877644
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=2.5e-24 Score=228.76 Aligned_cols=245 Identities=17% Similarity=0.170 Sum_probs=159.9
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL 201 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 201 (500)
.+++.|||++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 45777788888777776667777788888888888777666677777778888888888777666677777778888888
Q ss_pred cCCcCCCCCchhhcC-CCCCeEEccCCCccC-CCCCccCC-CCcceEEeccccccccCchhhhcccccC----cEEEecc
Q 041736 202 RYNEFEGKIPKALFD-KDLDAVFINNNRFSF-ELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTL----NEVILTN 274 (500)
Q Consensus 202 s~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~-~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L----~~L~Ls~ 274 (500)
++|++++..+..+.. .+|++|++++|.+++ .+|..++. .+|++|++++|.+.+..+..++.+.+ | ++|++++
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~~~~~L~l~~ 186 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ-MPLLNLSLDLSL 186 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHT-CTTCCCEEECTT
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhc-cchhhhhcccCC
Confidence 877777332222222 677777887777765 45665553 66777777777777666666666665 6 6666666
Q ss_pred CCCCCCCccc----------------------------------------------------------------------
Q 041736 275 NGLHSCLPEE---------------------------------------------------------------------- 284 (500)
Q Consensus 275 n~l~~~~p~~---------------------------------------------------------------------- 284 (500)
|.+.+..+..
T Consensus 187 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 6665544333
Q ss_pred -----------cccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCC
Q 041736 285 -----------IGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGES 353 (500)
Q Consensus 285 -----------~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~ 353 (500)
+..+++|++|++++|.++ .++..+..+ +|++|++++|.+. .+|. ..+++|++|++++|.+.+..
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBC
T ss_pred chhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccc
Confidence 334455555555555555 344555555 5555555555555 3433 34556666666666665555
Q ss_pred CC--CccCCEEEcCCCCCCCC
Q 041736 354 PV--CLDLQGFDDKRNCLRDK 372 (500)
Q Consensus 354 p~--~~~L~~l~l~~N~l~~~ 372 (500)
+. +.+|+.|++++|.+.+.
T Consensus 342 ~~~~~~~L~~L~l~~n~l~~~ 362 (570)
T 2z63_A 342 SEVDLPSLEFLDLSRNGLSFK 362 (570)
T ss_dssp CCCBCTTCCEEECCSSCCBEE
T ss_pred ccccCCCCCEEeCcCCccCcc
Confidence 43 34677888888877643
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.5e-25 Score=230.74 Aligned_cols=215 Identities=19% Similarity=0.158 Sum_probs=187.1
Q ss_pred CCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEE
Q 041736 144 LLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVF 223 (500)
Q Consensus 144 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~ 223 (500)
.+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+ +..+++|++|+|++|.+++ ++. ..+|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~~---~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LLV---GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EEE---CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CCC---CCCcCEEE
Confidence 33489999999999998888999999999999999999997666 8999999999999999984 332 28999999
Q ss_pred ccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccc-cCCCccEEeccCcccC
Q 041736 224 INNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIG-LLKNVTVFDVSYNKLM 302 (500)
Q Consensus 224 l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~ 302 (500)
+++|.+++..+..+ .+|+.|++++|.+++..+..++.+.+ |++|+|++|.+++.++..+. .+++|++|+|++|.|+
T Consensus 106 L~~N~l~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEECCC--SSCEEEECCSSCCCSGGGBCGGGGSS-EEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcccc--CCCCEEECCCCCCCCCCchhhcCCCC-CCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 99999997655433 67999999999999988889999997 99999999999998888876 7999999999999999
Q ss_pred CCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC---CccCCEEEcCCCCCC
Q 041736 303 GELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV---CLDLQGFDDKRNCLR 370 (500)
Q Consensus 303 ~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~---~~~L~~l~l~~N~l~ 370 (500)
+. + .+..+++|++|+|++|.|++. +..+..+++|+.|+|++|.|++.... +..|+.|++++|.+.
T Consensus 183 ~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 183 DV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred cc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 65 3 344689999999999999964 44588999999999999999975433 346899999999887
No 62
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1e-23 Score=218.81 Aligned_cols=80 Identities=24% Similarity=0.362 Sum_probs=38.3
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL 201 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 201 (500)
.+|+.|||++|.+.+..+ +.++.+|++|++++|.+++..+ +.++++|++|+|++|.+++..+ +.++++|++|++
T Consensus 68 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 141 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 141 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEE
T ss_pred cCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEEC
Confidence 445555555555544322 4555555555555555543322 4555555555555555543211 444444444444
Q ss_pred cCCcCC
Q 041736 202 RYNEFE 207 (500)
Q Consensus 202 s~N~l~ 207 (500)
++|.++
T Consensus 142 ~~n~l~ 147 (466)
T 1o6v_A 142 SSNTIS 147 (466)
T ss_dssp EEEEEC
T ss_pred CCCccC
Confidence 444443
No 63
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=9.6e-24 Score=218.97 Aligned_cols=239 Identities=23% Similarity=0.297 Sum_probs=165.5
Q ss_pred CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCch---------
Q 041736 118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPY--------- 188 (500)
Q Consensus 118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--------- 188 (500)
...+.+|+.|++++|.+.+..+ ++++++|++|+|++|.+++.. . +.++++|++|+|++|.+++. +.
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~ 160 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID-P-LKNLTNLNRLELSSNTISDI-SALSGLTSLQQ 160 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-G-GTTCTTCSEEEEEEEEECCC-GGGTTCTTCSE
T ss_pred hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCCh-H-HcCCCCCCEEECCCCccCCC-hhhccCCcccE
Confidence 4567899999999999988654 999999999999999998653 3 89999999999999998853 22
Q ss_pred -----------hccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCc
Q 041736 189 -----------VVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLP 257 (500)
Q Consensus 189 -----------~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p 257 (500)
.+.++++|++|++++|.+++ ++......+|++|++++|.+++..+ .....+|+.|++++|.+.+.
T Consensus 161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-- 236 (466)
T 1o6v_A 161 LSFGNQVTDLKPLANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI-- 236 (466)
T ss_dssp EEEEESCCCCGGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--
T ss_pred eecCCcccCchhhccCCCCCEEECcCCcCCC-ChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--
Confidence 24455666666666666653 3332223667777777776665433 22235677777777776642
Q ss_pred hhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCC
Q 041736 258 LSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLP 337 (500)
Q Consensus 258 ~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~ 337 (500)
..+..+.+ |++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|+|++|.+++..+ +..++
T Consensus 237 ~~l~~l~~-L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~ 309 (466)
T 1o6v_A 237 GTLASLTN-LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLK 309 (466)
T ss_dssp GGGGGCTT-CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCT
T ss_pred hhhhcCCC-CCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCC
Confidence 35666665 7777777777776433 6677777777777777774332 6677777777777777775433 66777
Q ss_pred CCcEEEccCCcCccCCCC--CccCCEEEcCCCCCCCC
Q 041736 338 NLRNFSFDYNFFTGESPV--CLDLQGFDDKRNCLRDK 372 (500)
Q Consensus 338 ~L~~L~Ls~N~l~g~~p~--~~~L~~l~l~~N~l~~~ 372 (500)
+|++|++++|++++..+. +.+|+.|++++|.+.+.
T Consensus 310 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 310 NLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp TCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred CCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc
Confidence 777777777777766542 34677777777777664
No 64
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=5.8e-24 Score=219.71 Aligned_cols=187 Identities=18% Similarity=0.238 Sum_probs=108.5
Q ss_pred CcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEE
Q 041736 120 SIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFL 199 (500)
Q Consensus 120 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 199 (500)
.+.+|+.|+|++|.+++. + ++.+++|++|+|++|.+++. + ++++++|++|+|++|++++ ++ +..+++|++|
T Consensus 62 ~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L 132 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYL 132 (457)
T ss_dssp GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEE
T ss_pred ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEE
Confidence 456677777777777663 2 66677777777777777653 2 6667777777777777764 33 6666777777
Q ss_pred eccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCC
Q 041736 200 DLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS 279 (500)
Q Consensus 200 ~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~ 279 (500)
++++|++++ ++ .....+|++|++++|+..+.+ ......+|++|++++|.+++ ++ ++.+.+ |++|++++|++++
T Consensus 133 ~l~~N~l~~-l~-l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~-L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 133 NCARNTLTE-ID-VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITE-LD--VSQNKL-LNRLNCDTNNITK 205 (457)
T ss_dssp ECTTSCCSC-CC-CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCC-CC--CTTCTT-CCEEECCSSCCSC
T ss_pred ECCCCccce-ec-cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccce-ec--cccCCC-CCEEECcCCcCCe
Confidence 777777664 22 111256666666666444443 12222456666666666554 22 445554 5555555555555
Q ss_pred CCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCC
Q 041736 280 CLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGT 328 (500)
Q Consensus 280 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 328 (500)
. .++.+++|++|++++|++++ +| +..+++|++|++++|.+++.
T Consensus 206 ~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 206 L---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp C---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred e---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 3 25555555555555555554 33 45555555555555555543
No 65
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=1.1e-24 Score=224.96 Aligned_cols=229 Identities=22% Similarity=0.259 Sum_probs=126.9
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCC-------------------------------
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLK------------------------------- 170 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~------------------------------- 170 (500)
.+|+.|++++|.+ |.+|.+|+++++|++|++++|.++|.+|..++++.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 4556666666666 55666666666666666666666555555555544
Q ss_pred --CCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEec
Q 041736 171 --LLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLA 248 (500)
Q Consensus 171 --~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~ 248 (500)
+|++|+|++|++++ +|.. +.+|++|++++|++++ ++.. ..+|++|++++|++++ +|......+|++|+++
T Consensus 90 ~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~--~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 90 PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL--PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVD 161 (454)
T ss_dssp CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC--CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECC
T ss_pred cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC--CCCCCEEECcCCCCCC-CcccCCCCCCCEEECC
Confidence 44445555554443 3321 2455555555555552 2211 1467777777777765 5543333667777777
Q ss_pred cccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCC
Q 041736 249 NNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGT 328 (500)
Q Consensus 249 ~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 328 (500)
+|.+++ +|..+ . +|++|++++|++++ ++ .++++++|++|++++|++++ +|.. ..+|++|++++|.++ .
T Consensus 162 ~N~l~~-lp~~~---~-~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~ 229 (454)
T 1jl5_A 162 NNSLKK-LPDLP---P-SLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-E 229 (454)
T ss_dssp SSCCSC-CCCCC---T-TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-S
T ss_pred CCcCcc-cCCCc---c-cccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-c
Confidence 777764 44332 2 37777777777777 44 57777788888888887774 3332 246777777777776 5
Q ss_pred CchhhcCCCCCcEEEccCCcCccCCCCCccCCEEEcCCCCCCCC
Q 041736 329 VPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKRNCLRDK 372 (500)
Q Consensus 329 ip~~l~~l~~L~~L~Ls~N~l~g~~p~~~~L~~l~l~~N~l~~~ 372 (500)
+|. +..+++|++|++++|++++.......|+.|++++|.+.+.
T Consensus 230 lp~-~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l 272 (454)
T 1jl5_A 230 LPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDL 272 (454)
T ss_dssp CCC-CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCC
T ss_pred ccc-cCCCCCCCEEECCCCcCCcccccccccCEEECCCCccccc
Confidence 663 7778888888888888876433344677777777777664
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=8.5e-24 Score=203.79 Aligned_cols=188 Identities=17% Similarity=0.171 Sum_probs=150.9
Q ss_pred CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCc
Q 041736 118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLK 197 (500)
Q Consensus 118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 197 (500)
...+.+|+.|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|++++..+..+..+++|+
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 127 (276)
T 2z62_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (276)
T ss_dssp TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCC
Confidence 45678999999999999988888899999999999999999988888999999999999999999977776899999999
Q ss_pred EEeccCCcCCC-CCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCc----EEEe
Q 041736 198 FLDLRYNEFEG-KIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLN----EVIL 272 (500)
Q Consensus 198 ~L~Ls~N~l~g-~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~----~L~L 272 (500)
+|+|++|++++ .++..+.. ..+|++|++++|++++..+..+..+.+ |+ +|++
T Consensus 128 ~L~l~~n~l~~~~l~~~~~~----------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~l~l~L~l 184 (276)
T 2z62_A 128 ELNVAHNLIQSFKLPEYFSN----------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQ-MPLLNLSLDL 184 (276)
T ss_dssp EEECCSSCCCCCCCCGGGGG----------------------CTTCCEEECCSSCCCEECGGGGHHHHT-CTTCCEEEEC
T ss_pred EEECcCCccceecCchhhcc----------------------CCCCCEEECCCCCCCcCCHHHhhhhhh-ccccceeeec
Confidence 99999999985 24544332 134555555555555555556666665 66 8899
Q ss_pred ccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCC
Q 041736 273 TNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTV 329 (500)
Q Consensus 273 s~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i 329 (500)
++|.+++..+..+. ..+|++|+|++|++++..+..+..+++|++|+|++|.+.+..
T Consensus 185 s~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 185 SLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 99999875544444 448999999999999766666788999999999999988643
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=3.2e-23 Score=201.27 Aligned_cols=202 Identities=18% Similarity=0.216 Sum_probs=138.0
Q ss_pred cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD 200 (500)
Q Consensus 121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 200 (500)
+.+++.+++++++++. +|..+. .+|++|+|++|.+++..+..|.++++|++|+|++|.+++. +. ...+++|++|+
T Consensus 9 l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEE
T ss_pred cCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEE
Confidence 4556666777766654 343332 4666677777766666566666666677777776666633 22 25566666666
Q ss_pred ccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCC
Q 041736 201 LRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC 280 (500)
Q Consensus 201 Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~ 280 (500)
|++|+++ .++..+ ....+|++|++++|++++..+..|..+.+ |++|+|++|++++.
T Consensus 84 Ls~N~l~-~l~~~~----------------------~~l~~L~~L~l~~N~l~~l~~~~~~~l~~-L~~L~L~~N~l~~~ 139 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLG----------------------QTLPALTVLDVSFNRLTSLPLGALRGLGE-LQELYLKGNELKTL 139 (290)
T ss_dssp CCSSCCS-SCCCCT----------------------TTCTTCCEEECCSSCCCCCCSSTTTTCTT-CCEEECTTSCCCCC
T ss_pred CCCCcCC-cCchhh----------------------ccCCCCCEEECCCCcCcccCHHHHcCCCC-CCEEECCCCCCCcc
Confidence 6666665 333221 11245666667777766555567777776 88888888888887
Q ss_pred CccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccC
Q 041736 281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGE 352 (500)
Q Consensus 281 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 352 (500)
.+..|..+++|++|+|++|+|++..+..+..+++|++|+|++|.|+ .+|..+..+.+|+.|+|++|.+...
T Consensus 140 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 6677788888888888888888555555677888888888888888 7777777778888888888887643
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.9e-24 Score=206.75 Aligned_cols=199 Identities=22% Similarity=0.200 Sum_probs=94.1
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL 201 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 201 (500)
.+|+.|++++|.+... ..+..+++|++|+|++|.+++. ..+..+++|++|+|++|++++..+..+..+++|++|+|
T Consensus 41 ~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 3444444444444321 1244444444444444444431 23444444444444444444433333444444444444
Q ss_pred cCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccC-CCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCC
Q 041736 202 RYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIG-NSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC 280 (500)
Q Consensus 202 s~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~ 280 (500)
++|+++ +..+..++ ..+|++|++++|.+++..+..|..+.+ |++|++++|++++.
T Consensus 117 ~~n~l~-----------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 117 VENQLQ-----------------------SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN-LTELDLSYNQLQSL 172 (272)
T ss_dssp TTSCCC-----------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCCC
T ss_pred CCCcCC-----------------------ccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc-CCEEECCCCCcCcc
Confidence 444444 22222111 133444444444444333334444554 55555555555554
Q ss_pred CccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC
Q 041736 281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV 355 (500)
Q Consensus 281 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~ 355 (500)
.+..++.+++|++|+|++|++++..+..+..+++|++|+|++|.+.+. +++|+.|+++.|.++|.+|.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccC
Confidence 444455555555555555555554444455555555555555555432 33455555555555555553
No 69
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=2.7e-23 Score=197.50 Aligned_cols=192 Identities=20% Similarity=0.239 Sum_probs=129.8
Q ss_pred CCCCcCceecCCCCCCCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcC
Q 041736 103 YVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRF 182 (500)
Q Consensus 103 ~~c~~~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 182 (500)
.||.|.|..|. ...+.++++++.++. +|..+. .+|++|+|++|.+++..+..|.++++|++|+|++|++
T Consensus 3 ~Cp~~~gC~C~--------~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 71 (251)
T 3m19_A 3 TCETVTGCTCN--------EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL 71 (251)
T ss_dssp -CHHHHSSEEE--------GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred cCCCCCceEcC--------CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC
Confidence 57788898894 245678999999875 555443 6899999999999988888899999999999999999
Q ss_pred CCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhc
Q 041736 183 AGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGN 262 (500)
Q Consensus 183 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~ 262 (500)
++..+..|..+++|++|+|++|++++..+. .|..
T Consensus 72 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------------------------------------------~~~~ 105 (251)
T 3m19_A 72 QTLSAGVFDDLTELGTLGLANNQLASLPLG----------------------------------------------VFDH 105 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTT----------------------------------------------TTTT
T ss_pred CccCHhHhccCCcCCEEECCCCcccccChh----------------------------------------------Hhcc
Confidence 988888888899999999998888732221 1222
Q ss_pred ccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEE
Q 041736 263 MSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNF 342 (500)
Q Consensus 263 l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L 342 (500)
+.+ |++|+|++|++++..+..+..+++|++|+|++|+|++..+..+..+++|++|+|++|.+++..+..+..+++|++|
T Consensus 106 l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 106 LTQ-LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp CTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cCC-CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 333 5555555555555444445555555555555555554444455555566666666666654444455556666666
Q ss_pred EccCCcCccC
Q 041736 343 SFDYNFFTGE 352 (500)
Q Consensus 343 ~Ls~N~l~g~ 352 (500)
+|++|.+++.
T Consensus 185 ~l~~N~~~c~ 194 (251)
T 3m19_A 185 TLFGNQFDCS 194 (251)
T ss_dssp ECCSCCBCTT
T ss_pred EeeCCceeCC
Confidence 6666666554
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.1e-23 Score=200.70 Aligned_cols=188 Identities=20% Similarity=0.186 Sum_probs=152.3
Q ss_pred CCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcE
Q 041736 119 HSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKF 198 (500)
Q Consensus 119 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 198 (500)
..+.+|+.|+|++|.+.+. ..+..+++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..+..+++|++
T Consensus 60 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp GGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 3468899999999999874 47899999999999999999888888999999999999999999887778899999999
Q ss_pred EeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCC
Q 041736 199 LDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLH 278 (500)
Q Consensus 199 L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~ 278 (500)
|+|++|++++..+..+.. ..+|++|++++|++++..+..|+.+.+ |++|++++|.++
T Consensus 138 L~L~~n~l~~~~~~~~~~----------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~ 194 (272)
T 3rfs_A 138 LNLAHNQLQSLPKGVFDK----------------------LTNLTELDLSYNQLQSLPEGVFDKLTQ-LKDLRLYQNQLK 194 (272)
T ss_dssp EECCSSCCCCCCTTTTTT----------------------CTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCS
T ss_pred EECCCCccCccCHHHhcc----------------------CccCCEEECCCCCcCccCHHHhcCCcc-CCEEECCCCcCC
Confidence 999999998433322211 134555555555555555555677776 999999999999
Q ss_pred CCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCC
Q 041736 279 SCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPN 338 (500)
Q Consensus 279 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~ 338 (500)
+..+..+..+++|++|+|++|.+.+. +++|+.|++..|.++|.+|.+++.+..
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 87777788899999999999988754 446888889999999999988876554
No 71
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=1.4e-22 Score=209.21 Aligned_cols=217 Identities=25% Similarity=0.347 Sum_probs=109.2
Q ss_pred cEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEecc
Q 041736 123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLR 202 (500)
Q Consensus 123 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 202 (500)
+|+.|++++|.+++ +| .|+++++|++|++++|.+++ +|..+ .+|++|++++|++++ ++ .+.++++|++|+++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 45555555555554 44 35555666666666665553 33322 355566666665553 34 35556666666666
Q ss_pred CCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCc
Q 041736 203 YNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLP 282 (500)
Q Consensus 203 ~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p 282 (500)
+|++++ ++... .+|++|++++|+++ .+|......+|++|++++|.+++ ++.. .. +|++|++++|.+++ ++
T Consensus 204 ~N~l~~-l~~~~--~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~~---~~-~L~~L~l~~N~l~~-l~ 273 (454)
T 1jl5_A 204 NNSLKK-LPDLP--LSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPDL---PP-SLEALNVRDNYLTD-LP 273 (454)
T ss_dssp SSCCSS-CCCCC--TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCSC---CT-TCCEEECCSSCCSC-CC
T ss_pred CCcCCc-CCCCc--CcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCc-cccc---cc-ccCEEECCCCcccc-cC
Confidence 666553 33221 35666666666655 44443333556666666666653 3321 12 25566666665555 33
Q ss_pred cccccCCCccEEeccCcccCC--CChhhhhCCCCCcEEEcccCCCCCCCchhhcCC-CCCcEEEccCCcCccCCCCCccC
Q 041736 283 EEIGLLKNVTVFDVSYNKLMG--ELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSL-PNLRNFSFDYNFFTGESPVCLDL 359 (500)
Q Consensus 283 ~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l-~~L~~L~Ls~N~l~g~~p~~~~L 359 (500)
.. +++|++|++++|++++ .++ .+|++|++++|.+++ + ..+ ++|++|++++|++++.......|
T Consensus 274 ~~---~~~L~~L~ls~N~l~~l~~~~------~~L~~L~l~~N~l~~-i----~~~~~~L~~L~Ls~N~l~~lp~~~~~L 339 (454)
T 1jl5_A 274 EL---PQSLTFLDVSENIFSGLSELP------PNLYYLNASSNEIRS-L----CDLPPSLEELNVSNNKLIELPALPPRL 339 (454)
T ss_dssp CC---CTTCCEEECCSSCCSEESCCC------TTCCEEECCSSCCSE-E----CCCCTTCCEEECCSSCCSCCCCCCTTC
T ss_pred cc---cCcCCEEECcCCccCcccCcC------CcCCEEECcCCcCCc-c----cCCcCcCCEEECCCCccccccccCCcC
Confidence 32 2455666666665554 221 234444444444332 1 112 35555556555555532223345
Q ss_pred CEEEcCCCCCCC
Q 041736 360 QGFDDKRNCLRD 371 (500)
Q Consensus 360 ~~l~l~~N~l~~ 371 (500)
+.|++++|.+++
T Consensus 340 ~~L~L~~N~l~~ 351 (454)
T 1jl5_A 340 ERLIASFNHLAE 351 (454)
T ss_dssp CEEECCSSCCSC
T ss_pred CEEECCCCcccc
Confidence 555555555554
No 72
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=5.4e-24 Score=213.51 Aligned_cols=247 Identities=18% Similarity=0.162 Sum_probs=174.7
Q ss_pred EEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCC----ccccCCC-CCCEEeCcCCcCCCcCchhccCC-----CC
Q 041736 126 GIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLP----RSFNKLK-LLFELDLSNNRFAGKFPYVVLGL-----PK 195 (500)
Q Consensus 126 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l-----~~ 195 (500)
.++|++|++++.++..+....+|++|+|++|.+++..+ ..|.+++ +|++|+|++|++++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35778888888887777777778888888888876655 6677777 78888888888887666666554 78
Q ss_pred CcEEeccCCcCCCCCchhhcC------CCCCeEEccCCCccCCCCCccC------CCCcceEEeccccccccCchh----
Q 041736 196 LKFLDLRYNEFEGKIPKALFD------KDLDAVFINNNRFSFELPDNIG------NSPVSVLVLANNKFHGCLPLS---- 259 (500)
Q Consensus 196 L~~L~Ls~N~l~g~~p~~~~~------~~L~~L~l~~n~l~~~~p~~~~------~~~L~~L~l~~n~l~~~~p~~---- 259 (500)
|++|+|++|++++..+..+.. .+|++|++++|++++.....+. ..+|++|++++|.+++.....
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 888888888887655554332 5788888888888765443332 247888888888888544333
Q ss_pred hhcccccCcEEEeccCCCCCCCccccc----cC-CCccEEeccCcccCCC----ChhhhhC-CCCCcEEEcccCCCCCCC
Q 041736 260 FGNMSRTLNEVILTNNGLHSCLPEEIG----LL-KNVTVFDVSYNKLMGE----LPDTIAE-MTSLQQLNVAHNMLSGTV 329 (500)
Q Consensus 260 l~~l~~~L~~L~Ls~n~l~~~~p~~~~----~l-~~L~~L~Ls~n~l~~~----~p~~l~~-l~~L~~L~L~~N~l~g~i 329 (500)
+..+..+|++|+|++|++++..+..+. .+ ++|++|||++|.|++. ++..+.. .++|++|+|++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 344442488888888888876654444 34 5888888888888853 4445554 358888888888887644
Q ss_pred c----hhhcCCCCCcEEEccCCcCccC-----------CCCCccCCEEEcCCCCCCCC
Q 041736 330 P----DSVCSLPNLRNFSFDYNFFTGE-----------SPVCLDLQGFDDKRNCLRDK 372 (500)
Q Consensus 330 p----~~l~~l~~L~~L~Ls~N~l~g~-----------~p~~~~L~~l~l~~N~l~~~ 372 (500)
. ..+..+++|++|+|++|.+.+. ++....|+.|++++|.+.+.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3 3446778888888888874332 33445677888888887664
No 73
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.6e-24 Score=219.18 Aligned_cols=232 Identities=18% Similarity=0.214 Sum_probs=164.5
Q ss_pred CcEEEEECCCCCCcccCc----hhhcCCCCCCEEEcCCC---CCCccCCccc-------cCCCCCCEEeCcCCcCCC---
Q 041736 122 RTVAGIDLNHGDIASYLP----EELGLLADIALFHVNTN---RFCGTLPRSF-------NKLKLLFELDLSNNRFAG--- 184 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n---~l~~~~p~~l-------~~l~~L~~L~Ls~n~l~~--- 184 (500)
.+|+.|+|++|.+.+..+ ..|..+++|++|+|++| ++++.+|..+ ..+++|++|+|++|.+++
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 568899999998876533 34668889999999885 4455566554 678889999999999886
Q ss_pred -cCchhccCCCCCcEEeccCCcCCCCCchhhcC--------------CCCCeEEccCCCcc-CCCCC---cc-CCCCcce
Q 041736 185 -KFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--------------KDLDAVFINNNRFS-FELPD---NI-GNSPVSV 244 (500)
Q Consensus 185 -~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~--------------~~L~~L~l~~n~l~-~~~p~---~~-~~~~L~~ 244 (500)
.++..+..+++|++|+|++|.+++..+..+.. ++|++|++++|+++ +.++. .+ ...+|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 46777888889999999999886433333322 57888888888876 33331 12 2356788
Q ss_pred EEeccccccc-----cCchhhhcccccCcEEEeccCCCC----CCCccccccCCCccEEeccCcccCCC----ChhhhhC
Q 041736 245 LVLANNKFHG-----CLPLSFGNMSRTLNEVILTNNGLH----SCLPEEIGLLKNVTVFDVSYNKLMGE----LPDTIAE 311 (500)
Q Consensus 245 L~l~~n~l~~-----~~p~~l~~l~~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~ 311 (500)
|++++|++.. .++..+..+.+ |++|+|++|.++ +.++..+..+++|++|+|++|.|++. ++..+..
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~-L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQE-LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTT-CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCC-ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 8888887762 22336666665 888888888875 44666777778888888888887754 4555533
Q ss_pred --CCCCcEEEcccCCCCC----CCchhh-cCCCCCcEEEccCCcCccCCC
Q 041736 312 --MTSLQQLNVAHNMLSG----TVPDSV-CSLPNLRNFSFDYNFFTGESP 354 (500)
Q Consensus 312 --l~~L~~L~L~~N~l~g----~ip~~l-~~l~~L~~L~Ls~N~l~g~~p 354 (500)
+++|++|+|++|.+++ .++..+ .++++|++|++++|.+++..+
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 7778888888888876 366666 557788888888888776653
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=2.8e-23 Score=203.78 Aligned_cols=223 Identities=17% Similarity=0.154 Sum_probs=171.5
Q ss_pred CcEEEEECCCCCCcccCch---hhcCCCCCCEEEcCCCCCCccCCccc--cCCCCCCEEeCcCCcCCCcCc----hhccC
Q 041736 122 RTVAGIDLNHGDIASYLPE---ELGLLADIALFHVNTNRFCGTLPRSF--NKLKLLFELDLSNNRFAGKFP----YVVLG 192 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p----~~l~~ 192 (500)
.+++.+++.++.+....-. .+..+++|++|+|++|.+++..+..+ ..+.+|++|+|++|++++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3577888888887543111 12345779999999999999999888 899999999999999997554 34557
Q ss_pred CCCCcEEeccCCcCCCCCchhhcC-CCCCeEEccCCCccCC--CC-Cc-c-CCCCcceEEeccccccccCch----hhhc
Q 041736 193 LPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFE--LP-DN-I-GNSPVSVLVLANNKFHGCLPL----SFGN 262 (500)
Q Consensus 193 l~~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~--~p-~~-~-~~~~L~~L~l~~n~l~~~~p~----~l~~ 262 (500)
+++|++|+|++|++++..+..+.. .+|++|++++|++.+. ++ .. + ...+|++|++++|+++. ++. .++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 899999999999998666655544 8999999999997642 21 11 1 23678999999998862 222 2456
Q ss_pred ccccCcEEEeccCCCCCCCccccccC---CCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCC
Q 041736 263 MSRTLNEVILTNNGLHSCLPEEIGLL---KNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNL 339 (500)
Q Consensus 263 l~~~L~~L~Ls~n~l~~~~p~~~~~l---~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L 339 (500)
+.+ |++|+|++|.+++.+|..+..+ ++|++|+|++|+|+ .+|..+. ++|++|+|++|+|++. +. +..+++|
T Consensus 223 l~~-L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L 296 (310)
T 4glp_A 223 GVQ-PHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV 296 (310)
T ss_dssp TCC-CSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred CCC-CCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence 676 9999999999998777777776 68999999999998 6777664 7899999999999853 33 5777888
Q ss_pred cEEEccCCcCcc
Q 041736 340 RNFSFDYNFFTG 351 (500)
Q Consensus 340 ~~L~Ls~N~l~g 351 (500)
++|+|++|.|+.
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 999999988864
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=3.3e-22 Score=194.10 Aligned_cols=180 Identities=19% Similarity=0.197 Sum_probs=146.4
Q ss_pred cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD 200 (500)
Q Consensus 121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 200 (500)
..+++.|+|++|.+.+..+..|..+++|++|+|++|.|++... .+.+++|++|+|++|+++ .++..+..+++|++|+
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence 3679999999999999888899999999999999999985433 378999999999999998 7888889999999999
Q ss_pred ccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCC
Q 041736 201 LRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC 280 (500)
Q Consensus 201 Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~ 280 (500)
|++|++++..+..+.. ..+|++|++++|.+++..+..|..+.+ |++|+|++|++++.
T Consensus 107 l~~N~l~~l~~~~~~~----------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRG----------------------LGELQELYLKGNELKTLPPGLLTPTPK-LEKLSLANNNLTEL 163 (290)
T ss_dssp CCSSCCCCCCSSTTTT----------------------CTTCCEEECTTSCCCCCCTTTTTTCTT-CCEEECTTSCCSCC
T ss_pred CCCCcCcccCHHHHcC----------------------CCCCCEEECCCCCCCccChhhcccccC-CCEEECCCCcCCcc
Confidence 9999998433332211 134555555666665444555677776 99999999999886
Q ss_pred CccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCC
Q 041736 281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSG 327 (500)
Q Consensus 281 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g 327 (500)
.+..+..+++|++|+|++|+|+ .+|..+..+.+|+.|+|++|.+..
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 6667788999999999999998 778888888899999999998864
No 76
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=4.1e-24 Score=211.88 Aligned_cols=259 Identities=16% Similarity=0.143 Sum_probs=194.3
Q ss_pred CCCcCceecCCCCCCCCcCcEEEEECCCCCCcccCchhhcCC--CCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCc
Q 041736 104 VCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLL--ADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNR 181 (500)
Q Consensus 104 ~c~~~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 181 (500)
|..|.++.|+. ..++.||++++.+. +..+..+ .+++.|++++|.+++..+. +..+.+|++|+|++|.
T Consensus 36 c~~W~~~~~~~-------~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~ 104 (336)
T 2ast_B 36 CKRWYRLASDE-------SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSV 104 (336)
T ss_dssp CHHHHHHHTCS-------TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCE
T ss_pred HHHHHHHhcCc-------hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCC
Confidence 34588877743 34678889888776 4556666 8899999999998876655 5678889999999998
Q ss_pred CCCc-CchhccCCCCCcEEeccCCcCCCCCchhhcC-CCCCeEEccCC-CccCC-CCCccC-CCCcceEEeccc-ccccc
Q 041736 182 FAGK-FPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNN-RFSFE-LPDNIG-NSPVSVLVLANN-KFHGC 255 (500)
Q Consensus 182 l~~~-~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n-~l~~~-~p~~~~-~~~L~~L~l~~n-~l~~~ 255 (500)
+++. ++..+..+++|++|+|++|.+++..+..+.. ++|++|++++| .+++. ++..+. ..+|++|++++| .+++.
T Consensus 105 l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 184 (336)
T 2ast_B 105 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK 184 (336)
T ss_dssp ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH
T ss_pred cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH
Confidence 8865 7778888899999999999888666665554 78999999988 56642 444332 367999999999 88764
Q ss_pred -Cchhhhccc-ccCcEEEeccC--CCC-CCCccccccCCCccEEeccCcc-cCCCChhhhhCCCCCcEEEcccCC-CCCC
Q 041736 256 -LPLSFGNMS-RTLNEVILTNN--GLH-SCLPEEIGLLKNVTVFDVSYNK-LMGELPDTIAEMTSLQQLNVAHNM-LSGT 328 (500)
Q Consensus 256 -~p~~l~~l~-~~L~~L~Ls~n--~l~-~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~N~-l~g~ 328 (500)
++..+..+. + |++|++++| .++ +.++..+..+++|++|+|++|. +++..+..+..+++|++|+|++|. +...
T Consensus 185 ~~~~~~~~l~~~-L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 185 HVQVAVAHVSET-ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp HHHHHHHHSCTT-CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred HHHHHHHhcccC-CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH
Confidence 566677887 6 999999999 555 4466777889999999999998 777777788889999999999985 3322
Q ss_pred CchhhcCCCCCcEEEccCCcCccCCCC-C-ccCCEEEcCCCCCCCCCCC
Q 041736 329 VPDSVCSLPNLRNFSFDYNFFTGESPV-C-LDLQGFDDKRNCLRDKPRQ 375 (500)
Q Consensus 329 ip~~l~~l~~L~~L~Ls~N~l~g~~p~-~-~~L~~l~l~~N~l~~~~~~ 375 (500)
.-..+..+++|++|++++| ++...-. . ..+..|++++|.+++..+.
T Consensus 264 ~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 264 TLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp GGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred HHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCccccCC
Confidence 2235778899999999988 4332111 1 1377888899988876553
No 77
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.6e-23 Score=210.08 Aligned_cols=230 Identities=14% Similarity=0.165 Sum_probs=184.7
Q ss_pred CcEEEEECCCCCCcccCc----hhhcCCC-CCCEEEcCCCCCCccCCccccCC-----CCCCEEeCcCCcCCCcCchh--
Q 041736 122 RTVAGIDLNHGDIASYLP----EELGLLA-DIALFHVNTNRFCGTLPRSFNKL-----KLLFELDLSNNRFAGKFPYV-- 189 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~Ls~n~l~~~~p~~-- 189 (500)
.+|+.|||++|.+.+... ..|..++ +|++|+|++|.+++..+..|..+ .+|++|+|++|++++..+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 469999999999988776 7788898 99999999999998777777775 99999999999999776664
Q ss_pred --ccCC-CCCcEEeccCCcCCCCCchhhc------CCCCCeEEccCCCccCCCCCcc----CC--CCcceEEeccccccc
Q 041736 190 --VLGL-PKLKFLDLRYNEFEGKIPKALF------DKDLDAVFINNNRFSFELPDNI----GN--SPVSVLVLANNKFHG 254 (500)
Q Consensus 190 --l~~l-~~L~~L~Ls~N~l~g~~p~~~~------~~~L~~L~l~~n~l~~~~p~~~----~~--~~L~~L~l~~n~l~~ 254 (500)
+..+ ++|++|+|++|++++.....+. ..+|++|++++|+++......+ .. .+|++|+|++|.+++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 4444 8999999999999866554443 2599999999999985433332 22 489999999999998
Q ss_pred cCchhhhcc-----cccCcEEEeccCCCCCC----Ccccccc-CCCccEEeccCcccCCCChh----hhhCCCCCcEEEc
Q 041736 255 CLPLSFGNM-----SRTLNEVILTNNGLHSC----LPEEIGL-LKNVTVFDVSYNKLMGELPD----TIAEMTSLQQLNV 320 (500)
Q Consensus 255 ~~p~~l~~l-----~~~L~~L~Ls~n~l~~~----~p~~~~~-l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~L 320 (500)
..+..+... .+ |++|+|++|.+++. ++..+.. .++|++|||++|.+++.... .+..+++|++|+|
T Consensus 182 ~~~~~l~~~l~~~~~~-L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 182 KNCAELAKFLASIPAS-VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp SCHHHHHHHHHTSCTT-CCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred hhHHHHHHHHHhCCCC-CCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 777666544 45 99999999999874 3445555 45999999999999976553 3467799999999
Q ss_pred ccCCCCCCC-------chhhcCCCCCcEEEccCCcCccC
Q 041736 321 AHNMLSGTV-------PDSVCSLPNLRNFSFDYNFFTGE 352 (500)
Q Consensus 321 ~~N~l~g~i-------p~~l~~l~~L~~L~Ls~N~l~g~ 352 (500)
++|.+.+.. ...+..+++|++||+++|.+.+.
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 999955432 33567888999999999999866
No 78
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=2.3e-22 Score=211.80 Aligned_cols=198 Identities=24% Similarity=0.406 Sum_probs=162.7
Q ss_pred CcCce-ecCCCCCCCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCC
Q 041736 106 NYTGV-FCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAG 184 (500)
Q Consensus 106 ~~~gv-~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 184 (500)
.|.++ .|.. .+|+.|+|++|++++ +|..+ +++|++|+|++|.|+ .+| ..+++|++|+|++|+|++
T Consensus 49 ~~~~l~~C~~-------~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ 114 (571)
T 3cvr_A 49 AVSLLKECLI-------NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST 114 (571)
T ss_dssp HHHHHHHHHH-------TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC
T ss_pred hhhhcccccc-------CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC
Confidence 58888 6743 479999999999988 77655 488999999999999 677 557899999999999996
Q ss_pred cCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhccc
Q 041736 185 KFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMS 264 (500)
Q Consensus 185 ~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~ 264 (500)
+|. +.+ +|++|+|++|++++ +|. ...+|++|++++|++++ +|. ...+|++|+|++|.+++ +|. |. .
T Consensus 115 -ip~-l~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~-l~--~ 180 (571)
T 3cvr_A 115 -LPE-LPA--SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPE-LP--E 180 (571)
T ss_dssp -CCC-CCT--TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC-CC--T
T ss_pred -cch-hhc--CCCEEECCCCcCCC-CCC--cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cch-hh--C
Confidence 777 655 99999999999996 776 55899999999999986 665 44689999999999986 666 55 4
Q ss_pred ccCcEEEeccCCCCCCCccccccCCCc-------cEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCC
Q 041736 265 RTLNEVILTNNGLHSCLPEEIGLLKNV-------TVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLP 337 (500)
Q Consensus 265 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~ 337 (500)
+ |++|+|++|+|+. +|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|.|++.+|..+..+.
T Consensus 181 ~-L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 181 S-LEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp T-CCEEECCSSCCSS-CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred C-CCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 4 9999999999985 666 554 67 99999999998 6888888899999999999999988888776543
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=3e-21 Score=185.34 Aligned_cols=201 Identities=20% Similarity=0.274 Sum_probs=163.5
Q ss_pred CCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEcc
Q 041736 146 ADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFIN 225 (500)
Q Consensus 146 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~ 225 (500)
.++++++++++.++ .+|..+. .+|++|+|++|++++..+..|.++++|++|+|++|+++ .++...+.
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~--------- 82 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFK--------- 82 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTS---------
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhc---------
Confidence 35788999999998 5666554 57999999999998776678888999999999999887 34433221
Q ss_pred CCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCC
Q 041736 226 NNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGEL 305 (500)
Q Consensus 226 ~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 305 (500)
...+|++|++++|.+.+..+..|..+.+ |++|++++|.+++..+..+..+++|++|+|++|+|++..
T Consensus 83 ------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 83 ------------ELKNLETLWVTDNKLQALPIGVFDQLVN-LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp ------------SCTTCCEEECCSSCCCCCCTTTTTTCSS-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ------------CCCCCCEEECCCCcCCcCCHhHcccccC-CCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence 1244666666666666555566788886 999999999999988888999999999999999999766
Q ss_pred hhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC----CccCCEEEcCCCCCCCC
Q 041736 306 PDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV----CLDLQGFDDKRNCLRDK 372 (500)
Q Consensus 306 p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~----~~~L~~l~l~~N~l~~~ 372 (500)
+..+..+++|++|+|++|.+++..+..|..+++|++|++++|++++..+. +..|+.|++++|.+...
T Consensus 150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 66789999999999999999977777789999999999999999976654 34699999999988654
No 80
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=1.8e-21 Score=207.40 Aligned_cols=214 Identities=24% Similarity=0.286 Sum_probs=114.9
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL 201 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 201 (500)
.+|+.|+|++|.|++ ++. .+++|++|+|++|.|+ .++. .+.+|++|+|++|++++ ++. .+.+|++|+|
T Consensus 61 ~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEEC
Confidence 456666666666653 333 4566666666666665 3443 55666666666666663 333 4456666666
Q ss_pred cCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCC
Q 041736 202 RYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCL 281 (500)
Q Consensus 202 s~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~ 281 (500)
++|+++ .++..+ .+|++|++++|++++ ++.. ..+|+.|++++|.+++ ++ ..+.+ |++|++++|.+++ +
T Consensus 129 ~~N~l~-~lp~~l--~~L~~L~Ls~N~l~~-l~~~--~~~L~~L~L~~N~l~~-l~---~~~~~-L~~L~Ls~N~l~~-l 196 (622)
T 3g06_A 129 FGNQLT-SLPVLP--PGLQELSVSDNQLAS-LPAL--PSELCKLWAYNNQLTS-LP---MLPSG-LQELSVSDNQLAS-L 196 (622)
T ss_dssp CSSCCS-CCCCCC--TTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSC-CC---CCCTT-CCEEECCSSCCSC-C
T ss_pred CCCCCC-cCCCCC--CCCCEEECcCCcCCC-cCCc--cCCCCEEECCCCCCCC-Cc---ccCCC-CcEEECCCCCCCC-C
Confidence 666666 344432 567777777776664 2322 1345555665555553 33 22243 7777777777665 3
Q ss_pred ccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCCccCCE
Q 041736 282 PEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQG 361 (500)
Q Consensus 282 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~~~L~~ 361 (500)
+.. +.+|+.|++++|.++ .++. .+++|++|+|++|.|++ +| ..+++|++|+|++|+|++......+|+.
T Consensus 197 ~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~~~~~L~~ 265 (622)
T 3g06_A 197 PTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPMLPSGLLS 265 (622)
T ss_dssp CCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCCCCTTCCE
T ss_pred CCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCcccccCcE
Confidence 322 244555555555554 2332 12455555555555553 33 2334555555555555543333334555
Q ss_pred EEcCCCCCC
Q 041736 362 FDDKRNCLR 370 (500)
Q Consensus 362 l~l~~N~l~ 370 (500)
|++++|.++
T Consensus 266 L~Ls~N~L~ 274 (622)
T 3g06_A 266 LSVYRNQLT 274 (622)
T ss_dssp EECCSSCCC
T ss_pred EeCCCCCCC
Confidence 555555555
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.2e-21 Score=191.94 Aligned_cols=193 Identities=16% Similarity=0.268 Sum_probs=137.4
Q ss_pred cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD 200 (500)
Q Consensus 121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 200 (500)
+.+|+.|++++|.+.. ++ .+..+++|++|+|++|.+++.. . +..+++|++|+|++|++++. + .+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEE
Confidence 5678888898888876 33 5788888899999888888543 3 88888888888888888853 3 578888888888
Q ss_pred ccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCC
Q 041736 201 LRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC 280 (500)
Q Consensus 201 Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~ 280 (500)
|++|++++ ++......+|++|++ ++|.+++..+ +..+.+ |++|++++|.+++.
T Consensus 114 l~~n~l~~-~~~l~~l~~L~~L~l-----------------------~~n~l~~~~~--l~~l~~-L~~L~l~~n~l~~~ 166 (308)
T 1h6u_A 114 LTSTQITD-VTPLAGLSNLQVLYL-----------------------DLNQITNISP--LAGLTN-LQYLSIGNAQVSDL 166 (308)
T ss_dssp CTTSCCCC-CGGGTTCTTCCEEEC-----------------------CSSCCCCCGG--GGGCTT-CCEEECCSSCCCCC
T ss_pred CCCCCCCC-chhhcCCCCCCEEEC-----------------------CCCccCcCcc--ccCCCC-ccEEEccCCcCCCC
Confidence 88888874 333211244555554 4444443222 566665 88888888877763
Q ss_pred CccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccC
Q 041736 281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGE 352 (500)
Q Consensus 281 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 352 (500)
+. +..+++|++|++++|++++.. . +..+++|++|+|++|.+++.. .+..+++|++|++++|.+++.
T Consensus 167 -~~-l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 167 -TP-LANLSKLTTLKADDNKISDIS-P-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp -GG-GTTCTTCCEEECCSSCCCCCG-G-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred -hh-hcCCCCCCEEECCCCccCcCh-h-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 33 777788888888888887433 2 677788888888888887544 267778888888888887653
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=2.1e-22 Score=197.55 Aligned_cols=222 Identities=17% Similarity=0.163 Sum_probs=177.2
Q ss_pred CCCCCEEEcCCCCCCccCCc---cccCCCCCCEEeCcCCcCCCcCchhc--cCCCCCcEEeccCCcCCCCCchh----h-
Q 041736 145 LADIALFHVNTNRFCGTLPR---SFNKLKLLFELDLSNNRFAGKFPYVV--LGLPKLKFLDLRYNEFEGKIPKA----L- 214 (500)
Q Consensus 145 l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~g~~p~~----~- 214 (500)
...++.|.+.++.++...-. .+..+++|++|+|++|.+++..+..+ ..+++|++|+|++|++++..+.. +
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34588899999888632111 12345779999999999999999888 89999999999999999755521 1
Q ss_pred cCCCCCeEEccCCCccCCCCCccCC-CCcceEEecccccccc--C--chhhhcccccCcEEEeccCCCCCCCcc----cc
Q 041736 215 FDKDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGC--L--PLSFGNMSRTLNEVILTNNGLHSCLPE----EI 285 (500)
Q Consensus 215 ~~~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~--~--p~~l~~l~~~L~~L~Ls~n~l~~~~p~----~~ 285 (500)
...+|++|++++|++++..+..++. .+|++|++++|++.+. + ...++.+.+ |++|+|++|+++. ++. .+
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~-L~~L~Ls~N~l~~-l~~~~~~l~ 220 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPA-IQNLALRNTGMET-PTGVCAALA 220 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCC-CCSCBCCSSCCCC-HHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCC-CCEEECCCCCCCc-hHHHHHHHH
Confidence 2379999999999998877776654 7899999999998653 2 223467776 9999999999975 333 25
Q ss_pred ccCCCccEEeccCcccCCCChhhhhCC---CCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccC-CC-CCccCC
Q 041736 286 GLLKNVTVFDVSYNKLMGELPDTIAEM---TSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGE-SP-VCLDLQ 360 (500)
Q Consensus 286 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-~p-~~~~L~ 360 (500)
+.+++|++|||++|+|++.+|..+..+ ++|++|+|++|.|+ .+|..+. ++|++|+|++|++++. .+ ....|+
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~ 297 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVD 297 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCS
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhhCCCcc
Confidence 788999999999999998878777776 69999999999999 7787764 7999999999999984 32 245799
Q ss_pred EEEcCCCCCCC
Q 041736 361 GFDDKRNCLRD 371 (500)
Q Consensus 361 ~l~l~~N~l~~ 371 (500)
.|++++|.++.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999998875
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.3e-23 Score=212.67 Aligned_cols=235 Identities=19% Similarity=0.263 Sum_probs=190.1
Q ss_pred CchhhcCCCCCCEEEcCCCCCCccCC----ccccCCCCCCEEeCcCC---cCCCcCchhc-------cCCCCCcEEeccC
Q 041736 138 LPEELGLLADIALFHVNTNRFCGTLP----RSFNKLKLLFELDLSNN---RFAGKFPYVV-------LGLPKLKFLDLRY 203 (500)
Q Consensus 138 ~p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~n---~l~~~~p~~l-------~~l~~L~~L~Ls~ 203 (500)
+...+..+++|++|+|++|.+++..+ ..|..+++|++|+|++| ++++.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 55678889999999999999986633 44778999999999996 4555566554 7899999999999
Q ss_pred CcCCCC----CchhhcC-CCCCeEEccCCCccCCCCCccCC--------------CCcceEEecccccc-ccCc---hhh
Q 041736 204 NEFEGK----IPKALFD-KDLDAVFINNNRFSFELPDNIGN--------------SPVSVLVLANNKFH-GCLP---LSF 260 (500)
Q Consensus 204 N~l~g~----~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~--------------~~L~~L~l~~n~l~-~~~p---~~l 260 (500)
|.+++. ++..+.. ++|++|+|++|.++...+..+.. .+|++|++++|+++ +.++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 999863 4544443 89999999999997443333322 58999999999998 3444 467
Q ss_pred hcccccCcEEEeccCCCCC-----CCccccccCCCccEEeccCcccC----CCChhhhhCCCCCcEEEcccCCCCCC---
Q 041736 261 GNMSRTLNEVILTNNGLHS-----CLPEEIGLLKNVTVFDVSYNKLM----GELPDTIAEMTSLQQLNVAHNMLSGT--- 328 (500)
Q Consensus 261 ~~l~~~L~~L~Ls~n~l~~-----~~p~~~~~l~~L~~L~Ls~n~l~----~~~p~~l~~l~~L~~L~L~~N~l~g~--- 328 (500)
..+.+ |++|+|++|+++. .++..+..+++|++|+|++|.|+ +.++..+..+++|++|+|++|.+++.
T Consensus 184 ~~~~~-L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 184 QSHRL-LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHCTT-CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HhCCC-cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 77876 9999999999983 24447889999999999999996 57888899999999999999999875
Q ss_pred -Cchhhc--CCCCCcEEEccCCcCcc----CCCC-----CccCCEEEcCCCCCCCCC
Q 041736 329 -VPDSVC--SLPNLRNFSFDYNFFTG----ESPV-----CLDLQGFDDKRNCLRDKP 373 (500)
Q Consensus 329 -ip~~l~--~l~~L~~L~Ls~N~l~g----~~p~-----~~~L~~l~l~~N~l~~~~ 373 (500)
++..+. .+++|++|+|++|.+++ .++. +..|+.|++++|.+.+..
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 566664 48999999999999998 3443 457999999999998765
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=6.4e-22 Score=186.45 Aligned_cols=196 Identities=17% Similarity=0.202 Sum_probs=103.1
Q ss_pred cEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCC-CCccCCccccCCCCCCEEeCcC-CcCCCcCchhccCCCCCcEEe
Q 041736 123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNR-FCGTLPRSFNKLKLLFELDLSN-NRFAGKFPYVVLGLPKLKFLD 200 (500)
Q Consensus 123 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~ 200 (500)
+++.|+|++|.+++..+..|..+++|++|+|++|. +++..+..|.++++|++|+|++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45566666666655544455556666666666664 5544444555566666666665 555544444555555666666
Q ss_pred ccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcc---eEEeccc-cccccCchhhhcccccCc-EEEeccC
Q 041736 201 LRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVS---VLVLANN-KFHGCLPLSFGNMSRTLN-EVILTNN 275 (500)
Q Consensus 201 Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~---~L~l~~n-~l~~~~p~~l~~l~~~L~-~L~Ls~n 275 (500)
+++|++++ +|. .....+|+ +|++++| .+++..+..|..+.+ |+ +|++++|
T Consensus 112 l~~n~l~~-lp~-----------------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~-L~~~L~l~~n 166 (239)
T 2xwt_C 112 IFNTGLKM-FPD-----------------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN-ETLTLKLYNN 166 (239)
T ss_dssp EEEECCCS-CCC-----------------------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBS-SEEEEECCSC
T ss_pred CCCCCCcc-ccc-----------------------cccccccccccEEECCCCcchhhcCcccccchhc-ceeEEEcCCC
Confidence 66555552 332 11112232 5555555 555444444555554 66 6666666
Q ss_pred CCCCCCccccccCCCccEEeccCcc-cCCCChhhhhCC-CCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCC
Q 041736 276 GLHSCLPEEIGLLKNVTVFDVSYNK-LMGELPDTIAEM-TSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYN 347 (500)
Q Consensus 276 ~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l-~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N 347 (500)
+++. ++......++|++|+|++|+ +++..+..+..+ ++|++|+|++|.++ .+|.. .+.+|++|+++++
T Consensus 167 ~l~~-i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 167 GFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCCE-ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred CCcc-cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 6653 33222222556666666663 554444455555 56666666666665 33332 3445555555544
No 85
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=1.7e-23 Score=216.60 Aligned_cols=249 Identities=16% Similarity=0.111 Sum_probs=124.2
Q ss_pred CcEEEEECCCCCCcccCchhhc-----CCCCCCEEEcCCCCCCcc----CCccccCCCCCCEEeCcCCcCCCcCchhcc-
Q 041736 122 RTVAGIDLNHGDIASYLPEELG-----LLADIALFHVNTNRFCGT----LPRSFNKLKLLFELDLSNNRFAGKFPYVVL- 191 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~- 191 (500)
++|+.|+|++|.+.+.....+. ...+|++|+|++|.+++. ++..+..+++|++|+|++|.+++.....+.
T Consensus 113 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 192 (461)
T 1z7x_W 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQ 192 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHH
Confidence 4455555555554332222111 133455555555555432 233344445555555555555432222221
Q ss_pred ----CCCCCcEEeccCCcCCCC----CchhhcC-CCCCeEEccCCCccCCC-----CCcc-CCCCcceEEecccccccc-
Q 041736 192 ----GLPKLKFLDLRYNEFEGK----IPKALFD-KDLDAVFINNNRFSFEL-----PDNI-GNSPVSVLVLANNKFHGC- 255 (500)
Q Consensus 192 ----~l~~L~~L~Ls~N~l~g~----~p~~~~~-~~L~~L~l~~n~l~~~~-----p~~~-~~~~L~~L~l~~n~l~~~- 255 (500)
.+++|++|+|++|.+++. ++..+.. .+|++|++++|.++... +... ...+|++|++++|.+++.
T Consensus 193 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~ 272 (461)
T 1z7x_W 193 GLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG 272 (461)
T ss_dssp HHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred HHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHH
Confidence 234555555555555432 2222221 45566666665554321 1111 124566666666666543
Q ss_pred ---CchhhhcccccCcEEEeccCCCCCCCcccccc-----CCCccEEeccCcccCCC----ChhhhhCCCCCcEEEcccC
Q 041736 256 ---LPLSFGNMSRTLNEVILTNNGLHSCLPEEIGL-----LKNVTVFDVSYNKLMGE----LPDTIAEMTSLQQLNVAHN 323 (500)
Q Consensus 256 ---~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~-----l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N 323 (500)
++..+..+.+ |++|++++|.+++.....+.. .++|++|+|++|.+++. ++..+..+++|++|+|++|
T Consensus 273 ~~~l~~~l~~~~~-L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 273 CGDLCRVLRAKES-LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp HHHHHHHHHHCTT-CCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhhCCC-cceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 3444555554 666666666665432222222 24666666666666643 3445556667777777777
Q ss_pred CCCCCCchhhcC-----CCCCcEEEccCCcCcc----CCCC----CccCCEEEcCCCCCCC
Q 041736 324 MLSGTVPDSVCS-----LPNLRNFSFDYNFFTG----ESPV----CLDLQGFDDKRNCLRD 371 (500)
Q Consensus 324 ~l~g~ip~~l~~-----l~~L~~L~Ls~N~l~g----~~p~----~~~L~~l~l~~N~l~~ 371 (500)
.+++.....+.. .++|++|++++|.+++ .++. +..|+.|++++|.+.+
T Consensus 352 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 666443333321 5567777777777664 3332 3467777777776654
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=6.7e-21 Score=186.56 Aligned_cols=172 Identities=19% Similarity=0.304 Sum_probs=124.5
Q ss_pred CCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcE
Q 041736 119 HSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKF 198 (500)
Q Consensus 119 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 198 (500)
..+.+|+.|+|++|.+.+..+ +..+++|++|+|++|.+++. ..+..+++|++|+|++|++++ ++ .+..+++|++
T Consensus 60 ~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 133 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQV 133 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCE
T ss_pred hccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCE
Confidence 346889999999999987544 99999999999999999853 369999999999999999996 44 3899999999
Q ss_pred EeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCC
Q 041736 199 LDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLH 278 (500)
Q Consensus 199 L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~ 278 (500)
|+|++|++++ ++......+|++|++++|++++ . +. +..+.+ |++|++++|.++
T Consensus 134 L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~-----------------------~-~~-l~~l~~-L~~L~l~~n~l~ 186 (308)
T 1h6u_A 134 LYLDLNQITN-ISPLAGLTNLQYLSIGNAQVSD-----------------------L-TP-LANLSK-LTTLKADDNKIS 186 (308)
T ss_dssp EECCSSCCCC-CGGGGGCTTCCEEECCSSCCCC-----------------------C-GG-GTTCTT-CCEEECCSSCCC
T ss_pred EECCCCccCc-CccccCCCCccEEEccCCcCCC-----------------------C-hh-hcCCCC-CCEEECCCCccC
Confidence 9999999984 3332222556666665555543 1 11 455554 666666666666
Q ss_pred CCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCC
Q 041736 279 SCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSG 327 (500)
Q Consensus 279 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g 327 (500)
+..+ +..+++|++|+|++|++++.. .+..+++|++|+|++|.+++
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 5322 666667777777777766433 26666677777777776653
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.5e-22 Score=200.64 Aligned_cols=231 Identities=15% Similarity=0.102 Sum_probs=185.8
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCcc-CCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGT-LPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD 200 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 200 (500)
.+++.|++++|.+.+..+. +..+.+|++|+|++|.+++. ++..+..+++|++|+|++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 6789999999999887665 56799999999999999866 788899999999999999999988888999999999999
Q ss_pred ccCC-cCCCC-Cchhhc-CCCCCeEEccCC-CccCC-CCCccC-CC-CcceEEeccc--ccc-ccCchhhhcccccCcEE
Q 041736 201 LRYN-EFEGK-IPKALF-DKDLDAVFINNN-RFSFE-LPDNIG-NS-PVSVLVLANN--KFH-GCLPLSFGNMSRTLNEV 270 (500)
Q Consensus 201 Ls~N-~l~g~-~p~~~~-~~~L~~L~l~~n-~l~~~-~p~~~~-~~-~L~~L~l~~n--~l~-~~~p~~l~~l~~~L~~L 270 (500)
|++| .+++. ++..+. .++|++|++++| .+++. ++..+. .. +|++|++++| .++ +.++..+..+.+ |++|
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~-L~~L 227 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN-LVHL 227 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT-CSEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCC-CCEE
Confidence 9999 67753 444333 389999999999 88753 344333 35 8999999999 455 456777788887 9999
Q ss_pred EeccCC-CCCCCccccccCCCccEEeccCcc-cCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCc
Q 041736 271 ILTNNG-LHSCLPEEIGLLKNVTVFDVSYNK-LMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNF 348 (500)
Q Consensus 271 ~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 348 (500)
++++|. +++..+..+..+++|++|+|++|. ++......+.++++|++|+|++| ++...-..+. .++..|++++|+
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~ 304 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSH 304 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCC
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEeccc
Confidence 999999 777778889999999999999995 43322236788999999999999 5543222232 236667799999
Q ss_pred CccCCCCCc
Q 041736 349 FTGESPVCL 357 (500)
Q Consensus 349 l~g~~p~~~ 357 (500)
+++..+...
T Consensus 305 l~~~~~~~~ 313 (336)
T 2ast_B 305 FTTIARPTI 313 (336)
T ss_dssp SCCTTCSSC
T ss_pred CccccCCcc
Confidence 999988644
No 88
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=2.4e-23 Score=215.37 Aligned_cols=248 Identities=15% Similarity=0.128 Sum_probs=169.9
Q ss_pred cEEEEECCCCCCcc----cCchhhcCCCCCCEEEcCCCCCCccCCcccc-----CCCCCCEEeCcCCcCCCc----Cchh
Q 041736 123 TVAGIDLNHGDIAS----YLPEELGLLADIALFHVNTNRFCGTLPRSFN-----KLKLLFELDLSNNRFAGK----FPYV 189 (500)
Q Consensus 123 ~l~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~Ls~n~l~~~----~p~~ 189 (500)
+|++|+|++|.++. .++..+..+++|++|+|++|.+++.....+. .+.+|++|+|++|++++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 57888888888864 4577778888888888888887654333332 245788888888888763 3556
Q ss_pred ccCCCCCcEEeccCCcCCCCCchhhc------CCCCCeEEccCCCccCC----CCCccC-CCCcceEEeccccccccCch
Q 041736 190 VLGLPKLKFLDLRYNEFEGKIPKALF------DKDLDAVFINNNRFSFE----LPDNIG-NSPVSVLVLANNKFHGCLPL 258 (500)
Q Consensus 190 l~~l~~L~~L~Ls~N~l~g~~p~~~~------~~~L~~L~l~~n~l~~~----~p~~~~-~~~L~~L~l~~n~l~~~~p~ 258 (500)
+..+++|++|+|++|.+++.....+. ..+|++|++++|.++.. ++..+. ..+|++|++++|.+.+....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 66678888888888887643333332 24888888888887753 233332 36788888888887653222
Q ss_pred hh-----hcccccCcEEEeccCCCCCC----CccccccCCCccEEeccCcccCCCChhhhhC-----CCCCcEEEcccCC
Q 041736 259 SF-----GNMSRTLNEVILTNNGLHSC----LPEEIGLLKNVTVFDVSYNKLMGELPDTIAE-----MTSLQQLNVAHNM 324 (500)
Q Consensus 259 ~l-----~~l~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~L~~N~ 324 (500)
.+ ..+.+ |++|++++|.+++. ++..+..+++|++|+|++|.+++.....+.. .++|++|+|++|.
T Consensus 246 ~l~~~~~~~~~~-L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 246 ELCPGLLHPSSR-LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHTSTTCC-CCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhcCCCC-ceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 22 23454 88888888888764 4566777888888888888876543333332 2588888888888
Q ss_pred CCCC----CchhhcCCCCCcEEEccCCcCccCCCC---------CccCCEEEcCCCCCCC
Q 041736 325 LSGT----VPDSVCSLPNLRNFSFDYNFFTGESPV---------CLDLQGFDDKRNCLRD 371 (500)
Q Consensus 325 l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~~p~---------~~~L~~l~l~~N~l~~ 371 (500)
+++. ++..+..+++|++|++++|.+++.... ...|+.|++++|.+++
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 8765 455667778888888888887654221 3368888888887764
No 89
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=1.7e-20 Score=199.89 Aligned_cols=218 Identities=25% Similarity=0.322 Sum_probs=177.1
Q ss_pred CcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEE
Q 041736 120 SIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFL 199 (500)
Q Consensus 120 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 199 (500)
.+.+|+.|+|++|.|++ ++. .+.+|++|+|++|.+++ ++. .+.+|++|+|++|++++ ++.. +++|++|
T Consensus 79 ~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L 146 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQEL 146 (622)
T ss_dssp CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEE
Confidence 46789999999999986 554 78999999999999985 454 67889999999999994 5653 4899999
Q ss_pred eccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCC
Q 041736 200 DLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS 279 (500)
Q Consensus 200 ~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~ 279 (500)
+|++|++++ ++. ...+|+.|++++|++++ ++ ....+|+.|++++|.+++ ++.. +.+ |+.|++++|.++.
T Consensus 147 ~Ls~N~l~~-l~~--~~~~L~~L~L~~N~l~~-l~--~~~~~L~~L~Ls~N~l~~-l~~~---~~~-L~~L~L~~N~l~~ 215 (622)
T 3g06_A 147 SVSDNQLAS-LPA--LPSELCKLWAYNNQLTS-LP--MLPSGLQELSVSDNQLAS-LPTL---PSE-LYKLWAYNNRLTS 215 (622)
T ss_dssp ECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CC--CCCTTCCEEECCSSCCSC-CCCC---CTT-CCEEECCSSCCSS
T ss_pred ECcCCcCCC-cCC--ccCCCCEEECCCCCCCC-Cc--ccCCCCcEEECCCCCCCC-CCCc---cch-hhEEECcCCcccc
Confidence 999999984 554 23789999999999985 55 223779999999999985 4433 244 9999999999986
Q ss_pred CCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC----
Q 041736 280 CLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV---- 355 (500)
Q Consensus 280 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~---- 355 (500)
++. .+++|++|+|++|+|++ +| ..+++|++|+|++|.|+ .+|. .+++|++|+|++|+|+ .+|.
T Consensus 216 -l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~ 282 (622)
T 3g06_A 216 -LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIH 282 (622)
T ss_dssp -CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGG
T ss_pred -cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhh
Confidence 443 35789999999999995 55 46689999999999998 5665 5788999999999998 4554
Q ss_pred CccCCEEEcCCCCCCCCC
Q 041736 356 CLDLQGFDDKRNCLRDKP 373 (500)
Q Consensus 356 ~~~L~~l~l~~N~l~~~~ 373 (500)
+.+|+.|++++|.+.+..
T Consensus 283 l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 283 LSSETTVNLEGNPLSERT 300 (622)
T ss_dssp SCTTCEEECCSCCCCHHH
T ss_pred ccccCEEEecCCCCCCcC
Confidence 346899999999988653
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=5.9e-21 Score=179.83 Aligned_cols=196 Identities=12% Similarity=0.088 Sum_probs=158.0
Q ss_pred CCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCc-CCCcCchhccCCCCCcEEeccC-CcCCCCCchhhcCCCCCeEE
Q 041736 146 ADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNR-FAGKFPYVVLGLPKLKFLDLRY-NEFEGKIPKALFDKDLDAVF 223 (500)
Q Consensus 146 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~-N~l~g~~p~~~~~~~L~~L~ 223 (500)
.+|++|+|++|.+++..+..|.++++|++|+|++|+ +++..+..|.++++|++|+|++ |+++ .++...+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f-------- 101 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDAL-------- 101 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSE--------
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHh--------
Confidence 489999999999997777789999999999999997 8866666889999999999998 8887 3332111
Q ss_pred ccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCc---EEEeccC-CCCCCCccccccCCCcc-EEeccC
Q 041736 224 INNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLN---EVILTNN-GLHSCLPEEIGLLKNVT-VFDVSY 298 (500)
Q Consensus 224 l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~---~L~Ls~n-~l~~~~p~~~~~l~~L~-~L~Ls~ 298 (500)
.+..+|++|++++|.+++ ++. |..+.+ |+ +|++++| ++++..+..|.++++|+ +|++++
T Consensus 102 -------------~~l~~L~~L~l~~n~l~~-lp~-~~~l~~-L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 102 -------------KELPLLKFLGIFNTGLKM-FPD-LTKVYS-TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp -------------ECCTTCCEEEEEEECCCS-CCC-CTTCCB-CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred -------------CCCCCCCEEeCCCCCCcc-ccc-cccccc-cccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence 112457777777777775 555 777776 87 9999999 99987777899999999 999999
Q ss_pred cccCCCChhhhhCCCCCcEEEcccCC-CCCCCchhhcCC-CCCcEEEccCCcCccCCCC-CccCCEEEcCCC
Q 041736 299 NKLMGELPDTIAEMTSLQQLNVAHNM-LSGTVPDSVCSL-PNLRNFSFDYNFFTGESPV-CLDLQGFDDKRN 367 (500)
Q Consensus 299 n~l~~~~p~~l~~l~~L~~L~L~~N~-l~g~ip~~l~~l-~~L~~L~Ls~N~l~g~~p~-~~~L~~l~l~~N 367 (500)
|+++ .++.......+|++|+|++|. +++..+..|..+ ++|++|++++|++++..+. ...++.|+++++
T Consensus 166 n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 166 NGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp CCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC
T ss_pred CCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCc
Confidence 9999 565554444899999999995 986666778899 9999999999999976655 347889988765
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=9.1e-21 Score=199.63 Aligned_cols=183 Identities=22% Similarity=0.333 Sum_probs=157.2
Q ss_pred CCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEcc
Q 041736 146 ADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFIN 225 (500)
Q Consensus 146 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~ 225 (500)
.+|++|+|++|.|++ +|..+ +++|++|+|++|+|+ .+| ..+++|++|+|++|+|++ +|. +. .+|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-ASLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-cCCCEEECC
Confidence 489999999999996 77766 378999999999999 677 457999999999999996 777 43 499999999
Q ss_pred CCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCC
Q 041736 226 NNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGEL 305 (500)
Q Consensus 226 ~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 305 (500)
+|++++ +|. ...+|++|++++|.+++ ++. .+.+ |++|+|++|.+++ +|. +. ++|++|+|++|+|+ .+
T Consensus 129 ~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~-L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE--LPALLEYINADNNQLTM-LPE---LPTS-LEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC---CCTT-CCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC--cCccccEEeCCCCccCc-CCC---cCCC-cCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 999997 666 56789999999999996 665 4555 9999999999998 676 66 89999999999999 67
Q ss_pred hhhhhCCCCC-------cEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC
Q 041736 306 PDTIAEMTSL-------QQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV 355 (500)
Q Consensus 306 p~~l~~l~~L-------~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~ 355 (500)
|. +.. +| +.|+|++|.|+ .+|..+..+++|++|+|++|.|++.+|.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 76 554 77 99999999999 6898888899999999999999987765
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.8e-20 Score=186.94 Aligned_cols=237 Identities=16% Similarity=0.188 Sum_probs=169.4
Q ss_pred CCcCceecCCCC--C--CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCC-ccccCCCCCCE-EeCc
Q 041736 105 CNYTGVFCAQAL--D--NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLP-RSFNKLKLLFE-LDLS 178 (500)
Q Consensus 105 c~~~gv~c~~~~--~--~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~-L~Ls 178 (500)
|.+..|.|.... . ..-..++++|+|++|.|+..-+..|+++++|++|+|++|.+.+.++ ..|.++++|++ ++++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 567778885321 0 1123578999999999987666789999999999999999876665 46788888765 6677
Q ss_pred CCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcC--CCCCeEEccC-CCccCCCCCccCC--CCcceEEecccccc
Q 041736 179 NNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLDAVFINN-NRFSFELPDNIGN--SPVSVLVLANNKFH 253 (500)
Q Consensus 179 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~--~~L~~L~l~~-n~l~~~~p~~~~~--~~L~~L~l~~n~l~ 253 (500)
.|+++...+..|..+++|++|++++|++++ ++...+. .++..|++.+ +++.......+.. ..++.|++++|+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 799997778889999999999999999984 4433332 5677777765 4454322222322 35788999999988
Q ss_pred ccCchhhhcccccCcEEEecc-CCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchh
Q 041736 254 GCLPLSFGNMSRTLNEVILTN-NGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDS 332 (500)
Q Consensus 254 ~~~p~~l~~l~~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~ 332 (500)
. ++.......+ |++|++++ |.++......|+.+++|++|||++|+|+ .+|.. .+.+|+.|.+.++.-...+|.
T Consensus 168 ~-i~~~~f~~~~-L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~- 241 (350)
T 4ay9_X 168 E-IHNSAFNGTQ-LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT- 241 (350)
T ss_dssp E-ECTTSSTTEE-EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCC-
T ss_pred C-CChhhccccc-hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCC-
Confidence 4 5555555565 88999875 4555533456788999999999999998 45542 355677777666544446663
Q ss_pred hcCCCCCcEEEccCCc
Q 041736 333 VCSLPNLRNFSFDYNF 348 (500)
Q Consensus 333 l~~l~~L~~L~Ls~N~ 348 (500)
+.++++|++++++++.
T Consensus 242 l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 242 LEKLVALMEASLTYPS 257 (350)
T ss_dssp TTTCCSCCEEECSCHH
T ss_pred chhCcChhhCcCCCCc
Confidence 7788888888887653
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=2.9e-20 Score=171.16 Aligned_cols=190 Identities=20% Similarity=0.177 Sum_probs=113.9
Q ss_pred CCcCceecCCCC----CCCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCC
Q 041736 105 CNYTGVFCAQAL----DNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNN 180 (500)
Q Consensus 105 c~~~gv~c~~~~----~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 180 (500)
|.|.++.|.... ......+++.|+|++|.+.+..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus 7 C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 678888885321 1112234555555555555544444555555555555555555444444555555555555555
Q ss_pred cCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccC-CCCcceEEeccccccccCchh
Q 041736 181 RFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIG-NSPVSVLVLANNKFHGCLPLS 259 (500)
Q Consensus 181 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~~n~l~~~~p~~ 259 (500)
++++..+..+..+++|++|+|++|+++ +..+..+. ..+|++|++++|.+++..+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 143 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQ-----------------------SLPDGVFDKLTQLKDLRLYQNQLKSVPDGV 143 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-----------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCc-----------------------ccCHhHhccCCcCCEEECCCCccceeCHHH
Confidence 555444444555555555555555555 32222222 255677777777777555555
Q ss_pred hhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCC
Q 041736 260 FGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTV 329 (500)
Q Consensus 260 l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i 329 (500)
+..+.+ |++|++++|.+.+ .+++|++|+++.|+++|.+|.+++.+.. ++..+...|..
T Consensus 144 ~~~l~~-L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~ 201 (208)
T 2o6s_A 144 FDRLTS-LQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKP 201 (208)
T ss_dssp TTTCTT-CCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCB
T ss_pred hccCCC-ccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCc
Confidence 777776 9999999987765 3557888999999999999988876654 34444444433
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=1.3e-19 Score=171.86 Aligned_cols=176 Identities=18% Similarity=0.139 Sum_probs=139.3
Q ss_pred CCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccC-CCCcceEEecc
Q 041736 171 LLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIG-NSPVSVLVLAN 249 (500)
Q Consensus 171 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~~ 249 (500)
..++++++++.++ .+|..+. .+|++|+|++|++++..+ ..+. ..+|++|+|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~-----------------------~~~~~l~~L~~L~L~~ 68 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSD-----------------------ATFRGLTKLTWLNLDY 68 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCT-----------------------TTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCH-----------------------hHhcCcccCCEEECCC
Confidence 3556677776666 4554443 456666666666653333 2222 25677777777
Q ss_pred ccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCC
Q 041736 250 NKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTV 329 (500)
Q Consensus 250 n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i 329 (500)
|.+.+..+..|..+.+ |++|+|++|++++..+..+..+++|++|+|++|+|++..+..+..+.+|++|+|++|.|++..
T Consensus 69 n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 69 NQLQTLSAGVFDDLTE-LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp SCCCCCCTTTTTTCTT-CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CcCCccCHhHhccCCc-CCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 7777767777888887 999999999999988888999999999999999999777777899999999999999999777
Q ss_pred chhhcCCCCCcEEEccCCcCccCCCC----CccCCEEEcCCCCCCCCC
Q 041736 330 PDSVCSLPNLRNFSFDYNFFTGESPV----CLDLQGFDDKRNCLRDKP 373 (500)
Q Consensus 330 p~~l~~l~~L~~L~Ls~N~l~g~~p~----~~~L~~l~l~~N~l~~~~ 373 (500)
+..+..+++|++|+|++|++++..+. ...|+.|++++|.+.+..
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence 77899999999999999999987764 346999999999998763
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=1.5e-19 Score=180.20 Aligned_cols=235 Identities=17% Similarity=0.165 Sum_probs=172.3
Q ss_pred EEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCc-hhccCCCCCcE-Eecc
Q 041736 125 AGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFP-YVVLGLPKLKF-LDLR 202 (500)
Q Consensus 125 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~-L~Ls 202 (500)
+.++.++++++. +|..+ .+++++|+|++|+|+..-+.+|.++++|++|+|++|++.+.++ ..|.++++|++ +.++
T Consensus 12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 357888988875 67655 4689999999999996555689999999999999999876665 46788988775 6677
Q ss_pred CCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCcc-CCCCcceEEecc-ccccccCchhhhcccccCcEEEeccCCCCC
Q 041736 203 YNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNI-GNSPVSVLVLAN-NKFHGCLPLSFGNMSRTLNEVILTNNGLHS 279 (500)
Q Consensus 203 ~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~-~~~~L~~L~l~~-n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~ 279 (500)
+|+++...+..+.. .+|++|++++|++....+..+ ...++..|++.+ +.+.......|..+...+++|+|++|+|+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 89998443444333 899999999999986544332 335678888865 556654455677766558999999999987
Q ss_pred CCccccccCCCccEEeccC-cccCCCCh-hhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC--
Q 041736 280 CLPEEIGLLKNVTVFDVSY-NKLMGELP-DTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV-- 355 (500)
Q Consensus 280 ~~p~~~~~l~~L~~L~Ls~-n~l~~~~p-~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-- 355 (500)
++.......+|++|++++ |.++ .++ ..|..+++|++|+|++|+|+ .+|.. .+.+|+.|.+.++.--..+|.
T Consensus 169 -i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~l~ 243 (350)
T 4ay9_X 169 -IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPTLE 243 (350)
T ss_dssp -ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCCTT
T ss_pred -CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCCch
Confidence 455555667899999985 5666 565 46789999999999999998 55542 245666666555543344554
Q ss_pred -CccCCEEEcCCC
Q 041736 356 -CLDLQGFDDKRN 367 (500)
Q Consensus 356 -~~~L~~l~l~~N 367 (500)
..+|+.+++.++
T Consensus 244 ~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 244 KLVALMEASLTYP 256 (350)
T ss_dssp TCCSCCEEECSCH
T ss_pred hCcChhhCcCCCC
Confidence 346777777654
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=2.9e-19 Score=164.52 Aligned_cols=174 Identities=22% Similarity=0.262 Sum_probs=99.7
Q ss_pred EEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCC
Q 041736 125 AGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYN 204 (500)
Q Consensus 125 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N 204 (500)
+.++.+++.++. +|..+ ..+|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 467777777655 33322 457788888888887666666777788888888888877555556677777777777777
Q ss_pred cCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccc
Q 041736 205 EFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEE 284 (500)
Q Consensus 205 ~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~ 284 (500)
++++ ++. ..|..+.+ |++|+|++|++++..+..
T Consensus 87 ~l~~-~~~---------------------------------------------~~~~~l~~-L~~L~L~~N~l~~~~~~~ 119 (208)
T 2o6s_A 87 QLQS-LPN---------------------------------------------GVFDKLTQ-LKELALNTNQLQSLPDGV 119 (208)
T ss_dssp CCCC-CCT---------------------------------------------TTTTTCTT-CCEEECCSSCCCCCCTTT
T ss_pred cCCc-cCH---------------------------------------------hHhcCccC-CCEEEcCCCcCcccCHhH
Confidence 7662 211 12223333 555555555555443344
Q ss_pred cccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC
Q 041736 285 IGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV 355 (500)
Q Consensus 285 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~ 355 (500)
+..+++|++|+|++|++++..+..+..+++|++|+|++|.+.+ .+++|++|+++.|+++|.+|.
T Consensus 120 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 120 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBC
T ss_pred hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeec
Confidence 4555555555555555554333334455555555555554432 233455555555555555554
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=3.4e-19 Score=172.89 Aligned_cols=81 Identities=27% Similarity=0.355 Sum_probs=44.0
Q ss_pred cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD 200 (500)
Q Consensus 121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 200 (500)
+.+|+.|++++|.+... ..+..+++|++|+|++|.+++..+ +.++++|++|+|++|++++ ++ .+..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 34556666666665443 235555666666666666654322 5555666666666665553 22 255555555555
Q ss_pred ccCCcCC
Q 041736 201 LRYNEFE 207 (500)
Q Consensus 201 Ls~N~l~ 207 (500)
|++|+++
T Consensus 119 L~~n~i~ 125 (291)
T 1h6t_A 119 LEHNGIS 125 (291)
T ss_dssp CTTSCCC
T ss_pred CCCCcCC
Confidence 5555554
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=7.9e-19 Score=164.18 Aligned_cols=164 Identities=23% Similarity=0.290 Sum_probs=106.8
Q ss_pred CCCCCCCCCCcCceecCCCCCCCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEe
Q 041736 97 SNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELD 176 (500)
Q Consensus 97 ~~w~~~~~c~~~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 176 (500)
..|.+...|.|++|.|.. +.+. .+|..+ ..+|++|+|++|.|++..+..|.++++|++|+
T Consensus 11 ~~~~~~~~Cs~~~v~c~~-----------------~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 70 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRS-----------------KRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELY 70 (229)
T ss_dssp CCCCTTCEEETTEEECTT-----------------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccCCCCCEEeCCEeEccC-----------------CCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEE
Confidence 445677889999998853 2222 234333 27888999999999888788888889999999
Q ss_pred CcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccC
Q 041736 177 LSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCL 256 (500)
Q Consensus 177 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~ 256 (500)
|++|+|+...+..|..+++|++|+|++|++++ ++.
T Consensus 71 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~-------------------------------------------- 105 (229)
T 3e6j_A 71 LGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPS-------------------------------------------- 105 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCT--------------------------------------------
T ss_pred CCCCCCCCcChhhcccCCCcCEEECCCCcCCc-cCh--------------------------------------------
Confidence 99999886555667888888888888888873 221
Q ss_pred chhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCC
Q 041736 257 PLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGT 328 (500)
Q Consensus 257 p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 328 (500)
..|..+.+ |++|+|++|+++. +|..+..+++|++|+|++|+|++..+..+..+++|++|+|++|.+.+.
T Consensus 106 -~~~~~l~~-L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 106 -AVFDRLVH-LKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp -TTTTTCTT-CCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred -hHhCcchh-hCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 11222333 5555555555552 455555555666666666666544444455566666666666665543
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=1e-18 Score=169.47 Aligned_cols=189 Identities=19% Similarity=0.231 Sum_probs=128.5
Q ss_pred EEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccC
Q 041736 124 VAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRY 203 (500)
Q Consensus 124 l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 203 (500)
+..+++..+.+.+.. .+..+.+|++|++++|.++. ++ .+..+++|++|+|++|++++..+ +..+++|++|+|++
T Consensus 26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence 344455555555432 34568899999999999984 44 58999999999999999996544 89999999999999
Q ss_pred CcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCcc
Q 041736 204 NEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPE 283 (500)
Q Consensus 204 N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~ 283 (500)
|++++ ++......+|++|++++|++++ . ..+..+.+ |++|++++|.+++. .
T Consensus 100 n~l~~-~~~l~~l~~L~~L~L~~n~i~~-----------------------~--~~l~~l~~-L~~L~l~~n~l~~~--~ 150 (291)
T 1h6t_A 100 NKVKD-LSSLKDLKKLKSLSLEHNGISD-----------------------I--NGLVHLPQ-LESLYLGNNKITDI--T 150 (291)
T ss_dssp SCCCC-GGGGTTCTTCCEEECTTSCCCC-----------------------C--GGGGGCTT-CCEEECCSSCCCCC--G
T ss_pred CcCCC-ChhhccCCCCCEEECCCCcCCC-----------------------C--hhhcCCCC-CCEEEccCCcCCcc--h
Confidence 99984 4432222556666665555543 1 34555554 66666766666663 4
Q ss_pred ccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCcc
Q 041736 284 EIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTG 351 (500)
Q Consensus 284 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 351 (500)
.+..+++|++|+|++|++++..+ +..+++|+.|+|++|.+++ ++ .+..+++|+.|++++|.++.
T Consensus 151 ~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 151 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 56666677777777777664333 6666677777777776663 33 36666677777777776654
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=2.2e-19 Score=191.03 Aligned_cols=103 Identities=25% Similarity=0.374 Sum_probs=54.1
Q ss_pred cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD 200 (500)
Q Consensus 121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 200 (500)
+.+|+.|+|++|.+... + .|..+++|++|+|++|.|++..+ +..+.+|++|+|++|++++ ++ .+..+++|++|+
T Consensus 42 L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 34555666666665442 2 35556666666666666654332 5566666666666666653 22 455566666666
Q ss_pred ccCCcCCCCCchhhcCCCCCeEEccCCCcc
Q 041736 201 LRYNEFEGKIPKALFDKDLDAVFINNNRFS 230 (500)
Q Consensus 201 Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~ 230 (500)
|++|++++ ++......+|+.|+|++|+++
T Consensus 116 Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 116 LEHNGISD-INGLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp CTTSCCCC-CGGGGGCTTCSEEECCSSCCC
T ss_pred ecCCCCCC-CccccCCCccCEEECCCCccC
Confidence 66666552 222222244444444444443
No 101
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.78 E-value=3.9e-20 Score=201.46 Aligned_cols=253 Identities=17% Similarity=0.161 Sum_probs=100.4
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCC--CCCCCcCceecCCCCCCCCcCcEEEEECCCCCCcccCchhhcCCCCC-----CE
Q 041736 78 YIALQAWKKAIISDPWNLTSNWVG--CYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADI-----AL 150 (500)
Q Consensus 78 ~~~l~~~~~~~~~~~~~~~~~w~~--~~~c~~~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L-----~~ 150 (500)
+.++..+...+....|.....|.. ...+.|.++.+.. .+++.|+|.+|.+... +..+.....| ..
T Consensus 134 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-------~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~ 205 (727)
T 4b8c_D 134 KQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST-------PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDE 205 (727)
T ss_dssp CHHHHHHHHHHHHHHTTC--------------------------------------------------------------
T ss_pred hhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC-------CccceEEeeCCCCCcc-hhhHhhcCccCcccccC
Confidence 556666666655555656666743 2345677666532 5678888888777653 2222111112 22
Q ss_pred EEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcC-CCCCeEEccCCCc
Q 041736 151 FHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRF 229 (500)
Q Consensus 151 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l 229 (500)
+++..|.+. ..+..+..+.+|++|+|++|.+. .++..+..+++|++|+|++|.|+ .+|..+.. .+|++|+|++|+|
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 222233333 34566777777777777777777 56666667777777777777777 66665544 6677777777776
Q ss_pred cCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCC-ccEEeccCcccCCCChh
Q 041736 230 SFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKN-VTVFDVSYNKLMGELPD 307 (500)
Q Consensus 230 ~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~Ls~n~l~~~~p~ 307 (500)
+ .+|..++. .+|++|+|++|.++ .+|..|+.+.+ |++|+|++|.|++.+|..+..+.. +..|+|++|.++|.+|.
T Consensus 283 ~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCN-LQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp S-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTT-CCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred C-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCC-ccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 6 55655544 55666666666665 55666666665 666677666666666655544321 22356666666666554
Q ss_pred hhhCCCCCcEEEcccC--------CCCCCCchhhcCCCCCcEEEccCCcCc
Q 041736 308 TIAEMTSLQQLNVAHN--------MLSGTVPDSVCSLPNLRNFSFDYNFFT 350 (500)
Q Consensus 308 ~l~~l~~L~~L~L~~N--------~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 350 (500)
. |+.|++++| .+.+.++..+.++..+....+++|.+.
T Consensus 360 ~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 360 E------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp C-----------------------------------------------CCC
T ss_pred c------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 3 334444444 222222333344445555556666554
No 102
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=9.5e-22 Score=207.90 Aligned_cols=191 Identities=21% Similarity=0.231 Sum_probs=143.9
Q ss_pred cCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCc-------------CCCcCchhccCCCCCcEEe-ccCCcCCC
Q 041736 143 GLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNR-------------FAGKFPYVVLGLPKLKFLD-LRYNEFEG 208 (500)
Q Consensus 143 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-------------l~~~~p~~l~~l~~L~~L~-Ls~N~l~g 208 (500)
..+.+|+.|+|++|.++ .+|..++++++|++|++++|. +.+.++..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45677777788887776 677777777778877776664 4455666666667777776 5555432
Q ss_pred CCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccC
Q 041736 209 KIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLL 288 (500)
Q Consensus 209 ~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l 288 (500)
+|+.+.+.+|.++.. + ...|+.|+|++|.+++ +|. |+.+.. |++|+|++|.|+ .+|..++.+
T Consensus 424 ---------~L~~l~l~~n~i~~l-~----~~~L~~L~Ls~n~l~~-lp~-~~~l~~-L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 424 ---------DLRSKFLLENSVLKM-E----YADVRVLHLAHKDLTV-LCH-LEQLLL-VTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp ---------HHHHHHHHHHHHHHH-H----HTTCSEEECTTSCCSS-CCC-GGGGTT-CCEEECCSSCCC-CCCGGGGGC
T ss_pred ---------hhhhhhhhccccccc-C----ccCceEEEecCCCCCC-CcC-cccccc-CcEeecCccccc-ccchhhhcC
Confidence 233444555555421 1 1247888888888885 565 888886 999999999998 578889999
Q ss_pred CCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCC-chhhcCCCCCcEEEccCCcCccCCCC
Q 041736 289 KNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTV-PDSVCSLPNLRNFSFDYNFFTGESPV 355 (500)
Q Consensus 289 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~~p~ 355 (500)
++|++|+|++|+|++ +| .++.+++|++|+|++|.|++.. |..+..+++|++|+|++|.|++.++.
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 999999999999985 67 7888999999999999998776 88888999999999999999887664
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=2e-18 Score=183.55 Aligned_cols=190 Identities=18% Similarity=0.232 Sum_probs=129.3
Q ss_pred EEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccC
Q 041736 124 VAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRY 203 (500)
Q Consensus 124 l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 203 (500)
+..+++..+.+...+. +..|.+|+.|+|++|.+.. ++ .|..+++|++|+|++|++++..+ +..+++|++|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 3444555555544332 4566777777888777763 33 47777778888888887775443 77777788888888
Q ss_pred CcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCcc
Q 041736 204 NEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPE 283 (500)
Q Consensus 204 N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~ 283 (500)
|.+++ ++......+|++|+|++|++.+ ++......+|+.|+|++|.+++. ..+..+.+ |++|+|++|.+.+..+
T Consensus 97 N~l~~-l~~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~-L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 97 NKIKD-LSSLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI--TVLSRLTK-LDTLSLEDNQISDIVP- 170 (605)
T ss_dssp SCCCC-CTTSTTCTTCCEEECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTT-CSEEECCSSCCCCCGG-
T ss_pred CCCCC-ChhhccCCCCCEEEecCCCCCC-CccccCCCccCEEECCCCccCCc--hhhcccCC-CCEEECcCCcCCCchh-
Confidence 87773 4432233677788888877774 34444446777888888877754 56777775 8888888887777544
Q ss_pred ccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCC
Q 041736 284 EIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGT 328 (500)
Q Consensus 284 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 328 (500)
+..+++|+.|+|++|+|++ + ..+..+++|+.|+|++|.+.+.
T Consensus 171 -l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECC
T ss_pred -hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCC
Confidence 7777788888888887774 3 3577777888888887777643
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=3.1e-18 Score=159.08 Aligned_cols=156 Identities=21% Similarity=0.258 Sum_probs=112.4
Q ss_pred CEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccc
Q 041736 173 FELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKF 252 (500)
Q Consensus 173 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l 252 (500)
+++++++|.++ .+|..+. ..+++|+|++|++++..+...+ -...+|++|+|++|.+
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~---------------------~~l~~L~~L~L~~N~i 69 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIF---------------------KKLPQLRKINFSNNKI 69 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCG---------------------GGCTTCCEEECCSSCC
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhh---------------------ccCCCCCEEECCCCcC
Confidence 46777777776 4554442 3456666666666633222111 1224566666666666
Q ss_pred cccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchh
Q 041736 253 HGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDS 332 (500)
Q Consensus 253 ~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~ 332 (500)
++..+..|..+.+ |++|+|++|.+++..+..|..+++|++|+|++|+|++..+..+..+.+|++|+|++|.|++..+..
T Consensus 70 ~~i~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 148 (220)
T 2v70_A 70 TDIEEGAFEGASG-VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148 (220)
T ss_dssp CEECTTTTTTCTT-CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred CEECHHHhCCCCC-CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH
Confidence 6666667777776 888888888888877777888888888888888888777888888888888888888888777888
Q ss_pred hcCCCCCcEEEccCCcCccCC
Q 041736 333 VCSLPNLRNFSFDYNFFTGES 353 (500)
Q Consensus 333 l~~l~~L~~L~Ls~N~l~g~~ 353 (500)
|..+++|++|+|++|.+++..
T Consensus 149 ~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 149 FDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TTTCTTCCEEECCSCCEECSG
T ss_pred hcCCCCCCEEEecCcCCcCCC
Confidence 888888888888888887654
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=2.5e-18 Score=172.07 Aligned_cols=175 Identities=23% Similarity=0.294 Sum_probs=113.1
Q ss_pred EEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCcccc-CCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCC
Q 041736 126 GIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFN-KLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYN 204 (500)
Q Consensus 126 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N 204 (500)
.++++++++.. +|..+. ..+++|+|++|.|++..+..|. ++.+|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 57788888766 555443 4688999999999877777777 8999999999999999777778888999999999988
Q ss_pred cCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccc
Q 041736 205 EFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEE 284 (500)
Q Consensus 205 ~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~ 284 (500)
++++ ++...+. +..+|++|+|++|.+.+..+..|..+.+ |++|+|++|+|++.....
T Consensus 99 ~l~~-~~~~~~~---------------------~l~~L~~L~L~~N~i~~~~~~~~~~l~~-L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 99 HLHT-LDEFLFS---------------------DLQALEVLLLYNNHIVVVDRNAFEDMAQ-LQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp CCCE-ECTTTTT---------------------TCTTCCEEECCSSCCCEECTTTTTTCTT-CCEEECCSSCCCSCCGGG
T ss_pred cCCc-CCHHHhC---------------------CCcCCCEEECCCCcccEECHHHhCCccc-CCEEECCCCcCCeeCHHH
Confidence 8873 2211110 1133444455555554444555666665 666666666666633333
Q ss_pred c---ccCCCccEEeccCcccCCCChhhhhCCCC--CcEEEcccCCCC
Q 041736 285 I---GLLKNVTVFDVSYNKLMGELPDTIAEMTS--LQQLNVAHNMLS 326 (500)
Q Consensus 285 ~---~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~L~~N~l~ 326 (500)
+ ..+++|+.|||++|+|++.....+..++. |+.|+|++|.+.
T Consensus 156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 3 44666666666666666444445555554 255666666554
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=5.8e-18 Score=157.24 Aligned_cols=153 Identities=16% Similarity=0.216 Sum_probs=111.0
Q ss_pred CEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccC-CCCcceEEecccc
Q 041736 173 FELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIG-NSPVSVLVLANNK 251 (500)
Q Consensus 173 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~~n~ 251 (500)
+.++++++.++ .+|..+. .+|++|+|++|+++ +..+..+. ..+|++|+|++|.
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-----------------------~i~~~~~~~l~~L~~L~Ls~N~ 67 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-----------------------VIPPGAFSPYKKLRRIDLSNNQ 67 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-----------------------EECTTSSTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-----------------------CcCHhHhhCCCCCCEEECCCCc
Confidence 45666666666 4454332 45666666666655 22222222 2457777777777
Q ss_pred ccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCch
Q 041736 252 FHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPD 331 (500)
Q Consensus 252 l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~ 331 (500)
+++..+..|..+.+ |++|+|++|.|++..+..|..+++|++|+|++|+|++..+..+..+++|++|+|++|.|++..+.
T Consensus 68 i~~~~~~~~~~l~~-L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 146 (220)
T 2v9t_B 68 ISELAPDAFQGLRS-LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146 (220)
T ss_dssp CCEECTTTTTTCSS-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CCCcCHHHhhCCcC-CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence 77667778888876 88888888888876666678888888888888888877778888888888888888888877667
Q ss_pred hhcCCCCCcEEEccCCcCccC
Q 041736 332 SVCSLPNLRNFSFDYNFFTGE 352 (500)
Q Consensus 332 ~l~~l~~L~~L~Ls~N~l~g~ 352 (500)
.+..+++|++|+|++|.+...
T Consensus 147 ~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 147 TFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp TTTTCTTCCEEECCSSCEECS
T ss_pred HHhCCCCCCEEEeCCCCcCCC
Confidence 788888888888888887653
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=1e-18 Score=166.91 Aligned_cols=168 Identities=18% Similarity=0.280 Sum_probs=102.8
Q ss_pred cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD 200 (500)
Q Consensus 121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 200 (500)
+.+++.++++++.+.+.. .+..+.+|++|++++|.++ .++ .+..+++|++|+|++|++++..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 456677778888877643 5677888888888888887 455 67888888888888888885443 78888888888
Q ss_pred ccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCC
Q 041736 201 LRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC 280 (500)
Q Consensus 201 Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~ 280 (500)
|++|++++ ++.... .+|++|++++|++++ . ..+..+.+ |++|++++|++++.
T Consensus 92 L~~N~l~~-l~~~~~-~~L~~L~L~~N~l~~-----------------------~--~~l~~l~~-L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 92 VNRNRLKN-LNGIPS-ACLSRLFLDNNELRD-----------------------T--DSLIHLKN-LEILSIRNNKLKSI 143 (263)
T ss_dssp CCSSCCSC-CTTCCC-SSCCEEECCSSCCSB-----------------------S--GGGTTCTT-CCEEECTTSCCCBC
T ss_pred CCCCccCC-cCcccc-CcccEEEccCCccCC-----------------------C--hhhcCccc-ccEEECCCCcCCCC
Confidence 88888873 333222 444444444444432 1 12444443 55555555555442
Q ss_pred CccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCC
Q 041736 281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS 326 (500)
Q Consensus 281 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 326 (500)
+ .+..+++|++|+|++|++++. ..+..+++|+.|+|++|.++
T Consensus 144 -~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 144 -V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp -G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred -h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 2 344555555555555555533 33444555555555555444
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=9.5e-18 Score=155.79 Aligned_cols=151 Identities=25% Similarity=0.341 Sum_probs=100.4
Q ss_pred EEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCc
Q 041736 126 GIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNE 205 (500)
Q Consensus 126 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 205 (500)
.+++++++++. +|..+. .+|++|+|++|.|++..+..|..+++|++|+|++|++++..+..|.++++|++|+|++|+
T Consensus 15 ~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 45666666654 454443 688999999999987777788889999999999999987778888888889999888888
Q ss_pred CCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCcccc
Q 041736 206 FEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEI 285 (500)
Q Consensus 206 l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~ 285 (500)
++ .++... |..+.+ |++|+|++|.+++..+..|
T Consensus 92 l~-~l~~~~---------------------------------------------f~~l~~-L~~L~L~~N~l~~~~~~~~ 124 (220)
T 2v9t_B 92 IT-ELPKSL---------------------------------------------FEGLFS-LQLLLLNANKINCLRVDAF 124 (220)
T ss_dssp CC-CCCTTT---------------------------------------------TTTCTT-CCEEECCSSCCCCCCTTTT
T ss_pred CC-ccCHhH---------------------------------------------ccCCCC-CCEEECCCCCCCEeCHHHc
Confidence 87 333221 222333 5555555555555545555
Q ss_pred ccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCC
Q 041736 286 GLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS 326 (500)
Q Consensus 286 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 326 (500)
..+++|++|+|++|+|++..+..+..+++|++|+|++|.+.
T Consensus 125 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 55555555555555555444444555555666666666554
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.9e-17 Score=154.68 Aligned_cols=155 Identities=21% Similarity=0.193 Sum_probs=109.5
Q ss_pred CCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEecccc
Q 041736 172 LFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNK 251 (500)
Q Consensus 172 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~ 251 (500)
.+.+++++++++ .+|..+. ++|++|+|++|++++..+..+. ...+|++|+|++|.
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~----------------------~l~~L~~L~L~~N~ 75 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFD----------------------SLINLKELYLGSNQ 75 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTT----------------------TCTTCCEEECCSSC
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhh----------------------CccCCcEEECCCCC
Confidence 455666666665 4444332 5566666666666543332221 12456666666666
Q ss_pred ccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCch
Q 041736 252 FHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPD 331 (500)
Q Consensus 252 l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~ 331 (500)
+.+..+..|..+.+ |++|+|++|++++..+..+..+++|++|+|++|+|+ .+|..+..+++|++|+|++|.|++..+.
T Consensus 76 l~~i~~~~~~~l~~-L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 76 LGALPVGVFDSLTQ-LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp CCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred CCCcChhhcccCCC-cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence 65444455677776 888899888888876777788888999999999888 7788888888899999999988866666
Q ss_pred hhcCCCCCcEEEccCCcCccCC
Q 041736 332 SVCSLPNLRNFSFDYNFFTGES 353 (500)
Q Consensus 332 ~l~~l~~L~~L~Ls~N~l~g~~ 353 (500)
.+..+++|++|++++|.+.+..
T Consensus 154 ~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TTTTCTTCCEEECTTSCBCTTB
T ss_pred HHhCCCCCCEEEeeCCCccCCc
Confidence 7888888888888888887654
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=6e-18 Score=154.29 Aligned_cols=153 Identities=13% Similarity=0.229 Sum_probs=85.3
Q ss_pred cCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeE
Q 041736 143 GLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAV 222 (500)
Q Consensus 143 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L 222 (500)
+.+.+|++|++++|.++ .++ .+..+++|++|++++|.++. + ..+..+++|++|++++|++++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~-~-~~l~~l~~L~~L~l~~n~l~~-------------- 102 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN-Y-NPISGLSNLERLRIMGKDVTS-------------- 102 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC-C-GGGTTCTTCCEEEEECTTCBG--------------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc-c-hhhhcCCCCCEEEeECCccCc--------------
Confidence 34556666666666666 444 46666666666666665542 2 245555555555555555542
Q ss_pred EccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcc-c
Q 041736 223 FINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNK-L 301 (500)
Q Consensus 223 ~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l 301 (500)
..+..++.+.+ |++|++++|.+++..+..++.+++|++|+|++|. +
T Consensus 103 --------------------------------~~~~~l~~l~~-L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i 149 (197)
T 4ezg_A 103 --------------------------------DKIPNLSGLTS-LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149 (197)
T ss_dssp --------------------------------GGSCCCTTCTT-CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBC
T ss_pred --------------------------------ccChhhcCCCC-CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCc
Confidence 22233444443 6666666666665555556666666666666665 3
Q ss_pred CCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCc
Q 041736 302 MGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFT 350 (500)
Q Consensus 302 ~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 350 (500)
+ .++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|++.
T Consensus 150 ~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 150 T-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp C-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred c-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 3 444 45666666666666666654 22 4556666666666666654
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=4.8e-21 Score=202.55 Aligned_cols=203 Identities=15% Similarity=0.136 Sum_probs=161.6
Q ss_pred CcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCC-------------CCccCCccccCCCCCCEEe-CcCCcCCCc
Q 041736 120 SIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNR-------------FCGTLPRSFNKLKLLFELD-LSNNRFAGK 185 (500)
Q Consensus 120 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-------------l~~~~p~~l~~l~~L~~L~-Ls~n~l~~~ 185 (500)
...+++.|+|++|.+. .+|..++++++|+.|++++|. +.+.++..++.+.+|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence 4567778999999986 589999999999999998775 5677888899999999999 7776543
Q ss_pred CchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccc
Q 041736 186 FPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSR 265 (500)
Q Consensus 186 ~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~ 265 (500)
.|+.+.+++|.++ .++. ..|+.|++++|++++ +|..-...+|+.|+|++|.++ .+|..|+.+.+
T Consensus 424 ---------~L~~l~l~~n~i~-~l~~----~~L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 487 (567)
T 1dce_A 424 ---------DLRSKFLLENSVL-KMEY----ADVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRC 487 (567)
T ss_dssp ---------HHHHHHHHHHHHH-HHHH----TTCSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred ---------hhhhhhhhccccc-ccCc----cCceEEEecCCCCCC-CcCccccccCcEeecCccccc-ccchhhhcCCC
Confidence 3444555666554 1221 346777777777775 555333367889999999988 78899999997
Q ss_pred cCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCC-hhhhhCCCCCcEEEcccCCCCCCCch---hhcCCCCCcE
Q 041736 266 TLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGEL-PDTIAEMTSLQQLNVAHNMLSGTVPD---SVCSLPNLRN 341 (500)
Q Consensus 266 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~N~l~g~ip~---~l~~l~~L~~ 341 (500)
|++|+|++|.|++ +| .++.+++|++|+|++|+|++.. |..++.+++|+.|+|++|.|++..+. .+..+++|+.
T Consensus 488 -L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 488 -LEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp -CCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred -CCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 9999999999998 67 8999999999999999999876 89999999999999999999876543 2345788988
Q ss_pred EEc
Q 041736 342 FSF 344 (500)
Q Consensus 342 L~L 344 (500)
||+
T Consensus 565 L~l 567 (567)
T 1dce_A 565 ILT 567 (567)
T ss_dssp EEC
T ss_pred cCC
Confidence 875
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=154.32 Aligned_cols=156 Identities=19% Similarity=0.277 Sum_probs=123.5
Q ss_pred CEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCc-hhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCC
Q 041736 149 ALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFP-YVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNN 227 (500)
Q Consensus 149 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n 227 (500)
+++++++|.++ .+|..+. ..+++|+|++|++++..+ ..|..+++|++|+|++|++++..+..+.
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~------------ 78 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE------------ 78 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTT------------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhC------------
Confidence 58999999998 5776654 357999999999997644 4588999999999999999843332221
Q ss_pred CccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChh
Q 041736 228 RFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPD 307 (500)
Q Consensus 228 ~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~ 307 (500)
+..+|++|+|++|.+++..+..|..+.+ |++|+|++|++++..+..|..+++|++|+|++|+|++..+.
T Consensus 79 ----------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 79 ----------GASGVNEILLTSNRLENVQHKMFKGLES-LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp ----------TCTTCCEEECCSSCCCCCCGGGGTTCSS-CCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred ----------CCCCCCEEECCCCccCccCHhHhcCCcC-CCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence 1245666666666666666667788886 99999999999988888888999999999999999987788
Q ss_pred hhhCCCCCcEEEcccCCCCCCCc
Q 041736 308 TIAEMTSLQQLNVAHNMLSGTVP 330 (500)
Q Consensus 308 ~l~~l~~L~~L~L~~N~l~g~ip 330 (500)
.+..+++|++|+|++|.+.+..+
T Consensus 148 ~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTTTCTTCCEEECCSCCEECSGG
T ss_pred HhcCCCCCCEEEecCcCCcCCCc
Confidence 88889999999999998876543
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.2e-17 Score=167.23 Aligned_cols=175 Identities=18% Similarity=0.170 Sum_probs=134.4
Q ss_pred CCcCceecCCCC----CCCCcCcEEEEECCCCCCcccCchhhc-CCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcC
Q 041736 105 CNYTGVFCAQAL----DNHSIRTVAGIDLNHGDIASYLPEELG-LLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSN 179 (500)
Q Consensus 105 c~~~gv~c~~~~----~~~~~~~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 179 (500)
|.+..+.|.... ...-...++.|+|++|.|++..+..|. .+.+|++|+|++|.|++..+..|.++.+|++|+|++
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 556667775321 112234588999999999998888887 999999999999999988888899999999999999
Q ss_pred CcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCch
Q 041736 180 NRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPL 258 (500)
Q Consensus 180 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~ 258 (500)
|+|++..+..|..+.+|++|+|++|++++..+..+.. .+|++|+|++| .+++....
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-----------------------~l~~l~~~ 154 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-----------------------QISRFPVE 154 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-----------------------CCCSCCGG
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-----------------------cCCeeCHH
Confidence 9999777778999999999999999998544433322 45555555555 44432222
Q ss_pred hh---hcccccCcEEEeccCCCCCCCccccccCCC--ccEEeccCcccCC
Q 041736 259 SF---GNMSRTLNEVILTNNGLHSCLPEEIGLLKN--VTVFDVSYNKLMG 303 (500)
Q Consensus 259 ~l---~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~--L~~L~Ls~n~l~~ 303 (500)
.| ..+.+ |++|+|++|+|++.....+..+.. |+.|+|++|.+.-
T Consensus 155 ~~~~~~~l~~-L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 155 LIKDGNKLPK-LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp GTC----CTT-CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred HhcCcccCCc-CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 23 45676 999999999999876678888887 4899999999874
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=6.1e-18 Score=161.57 Aligned_cols=172 Identities=19% Similarity=0.222 Sum_probs=135.3
Q ss_pred CCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEE
Q 041736 144 LLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVF 223 (500)
Q Consensus 144 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~ 223 (500)
.+.+++.+++++|.+++.. .+..+.+|++|++++|.++ .++ .+..+++|++|+|++|++++ ++......+|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSPLKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-ChhhccCCCCCEEE
Confidence 4566778889999988443 5788999999999999998 455 68888999999999999884 33311225566666
Q ss_pred ccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCC
Q 041736 224 INNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMG 303 (500)
Q Consensus 224 l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 303 (500)
+++|++++ ++. +.. .+ |++|+|++|++++. ..+..+++|++|+|++|+|++
T Consensus 92 L~~N~l~~------------------------l~~-~~~-~~-L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 92 VNRNRLKN------------------------LNG-IPS-AC-LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp CCSSCCSC------------------------CTT-CCC-SS-CCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB
T ss_pred CCCCccCC------------------------cCc-ccc-Cc-ccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC
Confidence 65555542 111 112 44 99999999999984 468999999999999999995
Q ss_pred CChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCC
Q 041736 304 ELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGES 353 (500)
Q Consensus 304 ~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~ 353 (500)
++ .+..+++|++|+|++|.+++. ..+..+++|++|++++|.+++..
T Consensus 143 -~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 143 -IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp -CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred -Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 44 688999999999999999976 67899999999999999998763
No 115
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=8.1e-19 Score=187.20 Aligned_cols=133 Identities=11% Similarity=0.013 Sum_probs=90.4
Q ss_pred CCcceEEeccccccccCchhhhc-ccccCcEEEec----cCCCCCC-----CccccccCCCccEEeccCcc--cCCCChh
Q 041736 240 SPVSVLVLANNKFHGCLPLSFGN-MSRTLNEVILT----NNGLHSC-----LPEEIGLLKNVTVFDVSYNK--LMGELPD 307 (500)
Q Consensus 240 ~~L~~L~l~~n~l~~~~p~~l~~-l~~~L~~L~Ls----~n~l~~~-----~p~~~~~l~~L~~L~Ls~n~--l~~~~p~ 307 (500)
.+|++|++..|.+++.....++. +.+ |++|+++ .|.+++. ++..+.++++|++|+|++|. +++....
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~-L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKN-LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCS-CCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCC-CcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 56777777777777665556655 554 8888885 5566653 33345667888888886533 5554444
Q ss_pred hhh-CCCCCcEEEcccCCCCC-CCchhhcCCCCCcEEEccCCcCccCC-C----CCccCCEEEcCCCCCCCCC
Q 041736 308 TIA-EMTSLQQLNVAHNMLSG-TVPDSVCSLPNLRNFSFDYNFFTGES-P----VCLDLQGFDDKRNCLRDKP 373 (500)
Q Consensus 308 ~l~-~l~~L~~L~L~~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~~-p----~~~~L~~l~l~~N~l~~~~ 373 (500)
.+. .+++|++|+|++|.+++ .++..+..+++|++|++++|.|++.. + .+..|+.|++++|.+++..
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTG 529 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTC
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHH
Confidence 443 47788888888888876 34555677888899999988876442 1 2456888899888877653
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=8.2e-18 Score=183.12 Aligned_cols=193 Identities=18% Similarity=0.185 Sum_probs=124.0
Q ss_pred EEEEECCCCCCcc---------cCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCC
Q 041736 124 VAGIDLNHGDIAS---------YLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLP 194 (500)
Q Consensus 124 l~~L~L~~n~l~~---------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 194 (500)
++.++|+.+.|.+ ..+..+..+.+|+.|+|++|.+. .++..+.++++|++|+|++|.|+ .+|..|.+|+
T Consensus 193 l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 270 (727)
T 4b8c_D 193 LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLS 270 (727)
T ss_dssp -----------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGT
T ss_pred hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCC
Confidence 4455555555433 34677889999999999999998 78888889999999999999999 8899999999
Q ss_pred CCcEEeccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEe
Q 041736 195 KLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVIL 272 (500)
Q Consensus 195 ~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~L 272 (500)
+|++|+|++|+|+ .+|..+.. .+|++|+|++|.++ .+|..++. .+|++|+|++|.+++.++..+..+...+..|+|
T Consensus 271 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l 348 (727)
T 4b8c_D 271 NLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYL 348 (727)
T ss_dssp TCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhh
Confidence 9999999999999 88887766 89999999999997 77877765 789999999999999999888776433456889
Q ss_pred ccCCCCCCCccccccCCCccEEeccCc--------ccCCCChhhhhCCCCCcEEEcccCCCC
Q 041736 273 TNNGLHSCLPEEIGLLKNVTVFDVSYN--------KLMGELPDTIAEMTSLQQLNVAHNMLS 326 (500)
Q Consensus 273 s~n~l~~~~p~~~~~l~~L~~L~Ls~n--------~l~~~~p~~l~~l~~L~~L~L~~N~l~ 326 (500)
++|.+++.+|.. |+.|+++.| .+.+.++..+..+..++...+++|-+.
T Consensus 349 ~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 349 RDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred ccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 999999988764 555667666 344444445566677777888888775
No 117
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=2e-18 Score=184.23 Aligned_cols=247 Identities=13% Similarity=0.097 Sum_probs=126.3
Q ss_pred CcEEEEECCCCCCccc----CchhhcCCCCCCEEEcCCCCCC----ccCCccccCCCCCCEEeCcCCcCCCcCchhccCC
Q 041736 122 RTVAGIDLNHGDIASY----LPEELGLLADIALFHVNTNRFC----GTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGL 193 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 193 (500)
++|++|+|++|.+.+. +...+..+++|++|+|++|.++ +.++..+.++++|++|+|++|.+.+ ++..+..+
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~ 242 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAA 242 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHC
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhh
Confidence 5666777777766544 3334455666777777766665 2233344556667777777666553 34444444
Q ss_pred CCCcEEeccCCcC--------------------------CCCCchhhcC-CCCCeEEccCCCccCCCCC-cc-CCCCcce
Q 041736 194 PKLKFLDLRYNEF--------------------------EGKIPKALFD-KDLDAVFINNNRFSFELPD-NI-GNSPVSV 244 (500)
Q Consensus 194 ~~L~~L~Ls~N~l--------------------------~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~-~~-~~~~L~~ 244 (500)
++|++|+++.+.. .+.++..+.. .+|++|++++|.+++.... .+ ...+|++
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~ 322 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence 5555554442110 1122222222 5777777777775432221 11 1234555
Q ss_pred EEecc-----------------------------------ccccccCchh-hhcccccCcEEEeccCCCCCCCcccccc-
Q 041736 245 LVLAN-----------------------------------NKFHGCLPLS-FGNMSRTLNEVILTNNGLHSCLPEEIGL- 287 (500)
Q Consensus 245 L~l~~-----------------------------------n~l~~~~p~~-l~~l~~~L~~L~Ls~n~l~~~~p~~~~~- 287 (500)
|++++ |.+++..... +..+.+ |++|+++.|++++.....+..
T Consensus 323 L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~l~~~~~~~l~~~ 401 (592)
T 3ogk_B 323 LETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE-LEYMAVYVSDITNESLESIGTY 401 (592)
T ss_dssp EEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTT-CSEEEEEESCCCHHHHHHHHHH
T ss_pred EeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCcc-CeEEEeecCCccHHHHHHHHhh
Confidence 55542 2232211111 122333 555555555555433333433
Q ss_pred CCCccEEecc----CcccCCC-----ChhhhhCCCCCcEEEcccC--CCCCCCchhhc-CCCCCcEEEccCCcCccC---
Q 041736 288 LKNVTVFDVS----YNKLMGE-----LPDTIAEMTSLQQLNVAHN--MLSGTVPDSVC-SLPNLRNFSFDYNFFTGE--- 352 (500)
Q Consensus 288 l~~L~~L~Ls----~n~l~~~-----~p~~l~~l~~L~~L~L~~N--~l~g~ip~~l~-~l~~L~~L~Ls~N~l~g~--- 352 (500)
+++|+.|+++ .|.+++. ++..+.++++|++|+|++| .+++.....+. .+++|++|++++|.+++.
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 5566666664 4455542 3333455666666666532 24443333332 367777888887777652
Q ss_pred --CCCCccCCEEEcCCCCCC
Q 041736 353 --SPVCLDLQGFDDKRNCLR 370 (500)
Q Consensus 353 --~p~~~~L~~l~l~~N~l~ 370 (500)
+..+.+|+.|++++|.++
T Consensus 482 ~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp HHHTCCTTCCEEEEESCCCB
T ss_pred HHHhcCcccCeeeccCCCCc
Confidence 123556888888888764
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=1.2e-16 Score=145.60 Aligned_cols=152 Identities=13% Similarity=0.181 Sum_probs=117.4
Q ss_pred cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD 200 (500)
Q Consensus 121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 200 (500)
+.+|+.|++++|.+.. ++ .+..+++|++|++++|.++. ...+..+++|++|+|++|++++..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 4679999999999984 55 68999999999999997762 34789999999999999999987888899999999999
Q ss_pred ccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCC
Q 041736 201 LRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS 279 (500)
Q Consensus 201 Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~ 279 (500)
|++|++++..+..+.. ++|++|++++|.+ +. .++ .+..+.+ |++|++++|.+++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~----------------------i~-~~~-~l~~l~~-L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGA----------------------IT-DIM-PLKTLPE-LKSLNIQFDGVHD 173 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTB----------------------CC-CCG-GGGGCSS-CCEEECTTBCCCC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCC----------------------cc-ccH-hhcCCCC-CCEEECCCCCCcC
Confidence 9999998655554433 4555555555541 22 333 5667776 8888888888887
Q ss_pred CCccccccCCCccEEeccCcccCC
Q 041736 280 CLPEEIGLLKNVTVFDVSYNKLMG 303 (500)
Q Consensus 280 ~~p~~~~~l~~L~~L~Ls~n~l~~ 303 (500)
. + .+..+++|++|++++|+|.+
T Consensus 174 ~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 174 Y-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp C-T-TGGGCSSCCEEEECBC----
T ss_pred h-H-HhccCCCCCEEEeeCcccCC
Confidence 3 3 67888889999999888764
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1.4e-16 Score=144.61 Aligned_cols=113 Identities=20% Similarity=0.264 Sum_probs=86.0
Q ss_pred CcceEEeccccccccCch-hhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEE
Q 041736 241 PVSVLVLANNKFHGCLPL-SFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLN 319 (500)
Q Consensus 241 ~L~~L~l~~n~l~~~~p~-~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 319 (500)
++++|++++|.+++..+. .|+.+.+ |++|+|++|++++..+..|..+++|++|+|++|+|++..+..+..+++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPH-LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTT-CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCC-CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 566666666666654443 3677775 88888888888887777888888888888888888877777777888888888
Q ss_pred cccCCCCCCCchhhcCCCCCcEEEccCCcCccCCC
Q 041736 320 VAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESP 354 (500)
Q Consensus 320 L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p 354 (500)
|++|+|++.++..+..+++|++|+|++|.|++..+
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88888887777778888888888888888876643
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=1.4e-15 Score=134.72 Aligned_cols=132 Identities=19% Similarity=0.148 Sum_probs=69.4
Q ss_pred CCCCEEEcCCCCCC-ccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEc
Q 041736 146 ADIALFHVNTNRFC-GTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFI 224 (500)
Q Consensus 146 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l 224 (500)
++|++|+|++|.++ +.++..+..+++|++|+|++|.+++. ..+..+++|++|+|++|++++.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~--------------- 86 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG--------------- 86 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSC---------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchH---------------
Confidence 45555555555554 44555555555555555555555533 4445555555555555554422
Q ss_pred cCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCC-ccccccCCCccEEeccCcccCC
Q 041736 225 NNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCL-PEEIGLLKNVTVFDVSYNKLMG 303 (500)
Q Consensus 225 ~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~ 303 (500)
++..+..+.+ |++|++++|.+++.. ...+..+++|++|++++|.+++
T Consensus 87 -------------------------------~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 87 -------------------------------LDMLAEKLPN-LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134 (168)
T ss_dssp -------------------------------CCHHHHHCTT-CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred -------------------------------HHHHHhhCCC-CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence 2233333443 555555555555521 1455556666666666666664
Q ss_pred CCh---hhhhCCCCCcEEEcccCCCC
Q 041736 304 ELP---DTIAEMTSLQQLNVAHNMLS 326 (500)
Q Consensus 304 ~~p---~~l~~l~~L~~L~L~~N~l~ 326 (500)
..+ ..+..+++|++|++++|.+.
T Consensus 135 ~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 135 LNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp STTHHHHHHTTCSSCCEETTEETTSC
T ss_pred hHHHHHHHHHhCccCcEecCCCCChh
Confidence 333 34555666666666666554
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=1.3e-15 Score=138.23 Aligned_cols=133 Identities=20% Similarity=0.208 Sum_probs=96.1
Q ss_pred CEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccc
Q 041736 173 FELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKF 252 (500)
Q Consensus 173 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l 252 (500)
++|++++|+++ .+|..+.. +|++|+|++|++++..+... .-...+|++|+|++|.+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~---------------------~~~l~~L~~L~Ls~N~l 66 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGL---------------------FGRLPHLVKLELKRNQL 66 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCS---------------------GGGCTTCCEEECCSSCC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccc---------------------cccCCCCCEEECCCCCC
Confidence 56777777775 55554432 66666666666653222211 11224567777777777
Q ss_pred cccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCc
Q 041736 253 HGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVP 330 (500)
Q Consensus 253 ~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip 330 (500)
++..+..|..+.+ |++|+|++|++++..+..|..+++|++|+|++|+|++..+..+..+++|++|+|++|.+++..+
T Consensus 67 ~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 67 TGIEPNAFEGASH-IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCBCTTTTTTCTT-CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCHhHcCCccc-CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 7666777888886 8888888888888777778888888888888888888888888888888999999888887654
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=4.1e-15 Score=134.98 Aligned_cols=128 Identities=23% Similarity=0.306 Sum_probs=97.0
Q ss_pred eEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcc
Q 041736 221 AVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNK 300 (500)
Q Consensus 221 ~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 300 (500)
++++++|+++ .+|..+. .++++|++++|.++ .++..|..+.+ |++|+|++|.|++..+..|.++++|++|+|++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~~-~~l~~L~L~~n~i~-~ip~~~~~l~~-L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP-RDVTELYLDGNQFT-LVPKELSNYKH-LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC-TTCCEEECCSSCCC-SCCGGGGGCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC-CCCCEEECCCCcCc-hhHHHhhcccC-CCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 3444444444 3343322 35677777777776 56677888886 8899999998888777788888899999999999
Q ss_pred cCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccC
Q 041736 301 LMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGE 352 (500)
Q Consensus 301 l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 352 (500)
|++..+..|..+++|++|+|++|.|++..+..|..+++|++|+|++|.+.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 8877777888888899999999988865555688888888888888887653
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.4e-15 Score=131.84 Aligned_cols=82 Identities=21% Similarity=0.284 Sum_probs=37.1
Q ss_pred cEEEEECCCCCCc-ccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736 123 TVAGIDLNHGDIA-SYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL 201 (500)
Q Consensus 123 ~l~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 201 (500)
+++.|++++|.+. +.++..+..+++|++|++++|.+++. ..+..+++|++|+|++|.+++.++..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 4445555555544 34444444444444444444444432 33444444444444444444334444433444444444
Q ss_pred cCCcC
Q 041736 202 RYNEF 206 (500)
Q Consensus 202 s~N~l 206 (500)
++|++
T Consensus 96 s~N~i 100 (149)
T 2je0_A 96 SGNKI 100 (149)
T ss_dssp TTSCC
T ss_pred CCCcC
Confidence 44443
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=7.5e-15 Score=131.16 Aligned_cols=114 Identities=21% Similarity=0.262 Sum_probs=84.3
Q ss_pred CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEE
Q 041736 240 SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLN 319 (500)
Q Consensus 240 ~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 319 (500)
.+++.|++++|.+.+..+..|..+.+ |++|++++|++++..+..+..+++|++|+|++|+|++..+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQ-LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTT-CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCccc-ccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 35666777777766555556677775 88888888888876666677888888888888888866666677788888888
Q ss_pred cccCCCCCCCchhhcCCCCCcEEEccCCcCccCCC
Q 041736 320 VAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESP 354 (500)
Q Consensus 320 L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p 354 (500)
|++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 88888875555556778888888888888776544
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=3.1e-15 Score=132.44 Aligned_cols=107 Identities=18% Similarity=0.163 Sum_probs=59.1
Q ss_pred CcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCC-ChhhhhCCCCCcEEE
Q 041736 241 PVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGE-LPDTIAEMTSLQQLN 319 (500)
Q Consensus 241 ~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~ 319 (500)
+|++|++++|.+++. ..+..+.+ |++|+|++|.+++.++..+..+++|++|+|++|+|++. ....+..+++|++|+
T Consensus 50 ~L~~L~l~~n~l~~~--~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 50 NLEFLSLINVGLISV--SNLPKLPK-LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126 (168)
T ss_dssp GCCEEEEESSCCCCC--SSCCCCSS-CCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred CCCEEeCcCCCCCCh--hhhccCCC-CCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEE
Confidence 344444444444432 44555554 66666666666655555555566666666666666532 114555666666666
Q ss_pred cccCCCCCCCc---hhhcCCCCCcEEEccCCcCc
Q 041736 320 VAHNMLSGTVP---DSVCSLPNLRNFSFDYNFFT 350 (500)
Q Consensus 320 L~~N~l~g~ip---~~l~~l~~L~~L~Ls~N~l~ 350 (500)
|++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 127 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 127 LFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66666654333 25556666666666666554
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=2.7e-15 Score=130.09 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=45.3
Q ss_pred cceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCC-ChhhhhCCCCCcEEEc
Q 041736 242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGE-LPDTIAEMTSLQQLNV 320 (500)
Q Consensus 242 L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L 320 (500)
|++|++++|.+++. ..++.+.+ |++|++++|.+++.++..+..+++|++|++++|++++. .+..+..+++|++|++
T Consensus 44 L~~L~l~~n~l~~~--~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 44 LEFLSTINVGLTSI--ANLPKLNK-LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp CCEEECTTSCCCCC--TTCCCCTT-CCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred CcEEECcCCCCCCc--hhhhcCCC-CCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 33344444433322 33444443 55555555555444444444445555555555554431 1234444555555555
Q ss_pred ccCCCCCCCc---hhhcCCCCCcEEEcc
Q 041736 321 AHNMLSGTVP---DSVCSLPNLRNFSFD 345 (500)
Q Consensus 321 ~~N~l~g~ip---~~l~~l~~L~~L~Ls 345 (500)
++|.+++..+ ..+..+++|++||++
T Consensus 121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 121 FNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred cCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5555443332 234444455554443
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=2.3e-14 Score=128.00 Aligned_cols=103 Identities=20% Similarity=0.227 Sum_probs=47.7
Q ss_pred CCcCceecCCCC----CCCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCC
Q 041736 105 CNYTGVFCAQAL----DNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNN 180 (500)
Q Consensus 105 c~~~gv~c~~~~----~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 180 (500)
|.|+++.|.... ......+++.|+|++|.+.+..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus 7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 566666664310 0111234445555555544433334444455555555555554333333444455555555555
Q ss_pred cCCCcCchhccCCCCCcEEeccCCcCC
Q 041736 181 RFAGKFPYVVLGLPKLKFLDLRYNEFE 207 (500)
Q Consensus 181 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 207 (500)
++++..+..+..+++|++|+|++|+++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLK 113 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CccccCHHHhhCCcccCEEECcCCcce
Confidence 554433334444445555555555444
No 128
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.55 E-value=2.2e-16 Score=168.30 Aligned_cols=199 Identities=15% Similarity=0.063 Sum_probs=118.6
Q ss_pred CCCCCCEEeCcCCcCCCcC-chhccCCCCCcEEeccCCcCCCCCchhhc--CCCCCeEEccC---------CCccCCCCC
Q 041736 168 KLKLLFELDLSNNRFAGKF-PYVVLGLPKLKFLDLRYNEFEGKIPKALF--DKDLDAVFINN---------NRFSFELPD 235 (500)
Q Consensus 168 ~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~--~~~L~~L~l~~---------n~l~~~~p~ 235 (500)
.+++|++|+|++|.+++.. ...+..+++|++|++++| ++......+. .++|++|++.+ +.+++....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 3455666666665544321 222345566666666655 2211111111 25666666632 233221111
Q ss_pred cc--CCCCcceEEeccccccccCchhhh-cccccCcEEEec--c----CCCCCC-----CccccccCCCccEEeccCccc
Q 041736 236 NI--GNSPVSVLVLANNKFHGCLPLSFG-NMSRTLNEVILT--N----NGLHSC-----LPEEIGLLKNVTVFDVSYNKL 301 (500)
Q Consensus 236 ~~--~~~~L~~L~l~~n~l~~~~p~~l~-~l~~~L~~L~Ls--~----n~l~~~-----~p~~~~~l~~L~~L~Ls~n~l 301 (500)
.+ +..+|+.|.+..|.+++.....+. .+.+ |++|+++ + +++++. +...+..+++|+.|+|++ .+
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~-L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l 443 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPN-MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LL 443 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTT-CCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCC-cceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cc
Confidence 11 135677777777777765555554 3555 8888888 3 455531 122356778888888877 66
Q ss_pred CCCChhhhhC-CCCCcEEEcccCCCCCCCchhh-cCCCCCcEEEccCCcCccCCC-----CCccCCEEEcCCCCC
Q 041736 302 MGELPDTIAE-MTSLQQLNVAHNMLSGTVPDSV-CSLPNLRNFSFDYNFFTGESP-----VCLDLQGFDDKRNCL 369 (500)
Q Consensus 302 ~~~~p~~l~~-l~~L~~L~L~~N~l~g~ip~~l-~~l~~L~~L~Ls~N~l~g~~p-----~~~~L~~l~l~~N~l 369 (500)
++.....+.. +++|++|+|++|.+++.....+ ..+++|++|+|++|.+++... .+.+|+.|++++|.+
T Consensus 444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 6555555554 7889999999998876544444 568899999999998864322 245789999998877
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=6.6e-17 Score=147.46 Aligned_cols=62 Identities=21% Similarity=0.312 Sum_probs=33.9
Q ss_pred CCCCCCEEEcCCCCCCccCCc------cccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCC
Q 041736 144 LLADIALFHVNTNRFCGTLPR------SFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFE 207 (500)
Q Consensus 144 ~l~~L~~L~L~~n~l~~~~p~------~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 207 (500)
....++.++++.+.++|.++. .|..+++|++|+|++|++++ ++ .+..+++|++|+|++|+++
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~ 83 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK 83 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc
Confidence 344455555555555554443 55566666666666666653 44 4555555555555555554
No 130
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.52 E-value=1.3e-15 Score=162.35 Aligned_cols=104 Identities=14% Similarity=0.161 Sum_probs=62.3
Q ss_pred CcEEEeccCCCCCCCccccc-cCCCccEEecc--C----cccCC-----CChhhhhCCCCCcEEEcccCCCCCCCchhhc
Q 041736 267 LNEVILTNNGLHSCLPEEIG-LLKNVTVFDVS--Y----NKLMG-----ELPDTIAEMTSLQQLNVAHNMLSGTVPDSVC 334 (500)
Q Consensus 267 L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls--~----n~l~~-----~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~ 334 (500)
|++|++..|++++.....+. .+++|+.|+|+ + +.+++ .+...+..+++|++|+|++ .+++.....+.
T Consensus 374 L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~ 452 (594)
T 2p1m_B 374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG 452 (594)
T ss_dssp CCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH
T ss_pred HHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHH
Confidence 55555555555443333332 46677777776 3 44442 1122245667777777765 55544444444
Q ss_pred C-CCCCcEEEccCCcCccCCC-----CCccCCEEEcCCCCCCC
Q 041736 335 S-LPNLRNFSFDYNFFTGESP-----VCLDLQGFDDKRNCLRD 371 (500)
Q Consensus 335 ~-l~~L~~L~Ls~N~l~g~~p-----~~~~L~~l~l~~N~l~~ 371 (500)
. +++|++|+|++|.+++... .+.+|+.|++++|.+++
T Consensus 453 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 453 TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 4 7788999999988865432 25578999999998743
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=2.7e-14 Score=140.77 Aligned_cols=189 Identities=12% Similarity=0.023 Sum_probs=122.5
Q ss_pred CCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCC--cc---CCCC--CccC---
Q 041736 169 LKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNR--FS---FELP--DNIG--- 238 (500)
Q Consensus 169 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~--l~---~~~p--~~~~--- 238 (500)
+.+|++|+|.+ .++..-...|.++.+|+.|++++|.+. .++...|...+..+.+..+. .. ..+. .+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 88888888888 777555667888888888888888876 55555555333333332221 10 0000 0001
Q ss_pred -----------------------CCCcceEEeccccccccCchhhh-cccccCcEEEeccCCCCCCCccccccCCCccEE
Q 041736 239 -----------------------NSPVSVLVLANNKFHGCLPLSFG-NMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVF 294 (500)
Q Consensus 239 -----------------------~~~L~~L~l~~n~l~~~~p~~l~-~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 294 (500)
..++..+.+.++-.. .....+. .+.+ |++|+|++|+++..-...|.++.+|+.|
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~-L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPN-LVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTT-CCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCC-CeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 122333333332111 1111122 2454 9999999999988777789999999999
Q ss_pred eccCcccCCCChhhhhCCCCCc-EEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC----CccCCEEE
Q 041736 295 DVSYNKLMGELPDTIAEMTSLQ-QLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV----CLDLQGFD 363 (500)
Q Consensus 295 ~Ls~n~l~~~~p~~l~~l~~L~-~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~----~~~L~~l~ 363 (500)
+|.+| ++..-...|.++.+|+ .|++.+ .++..-...|.++.+|+.|+++.|.++..... |.+|+.+.
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 99998 7755567788999999 999988 67645567899999999999999988755443 34566654
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=1.4e-16 Score=145.29 Aligned_cols=81 Identities=20% Similarity=0.240 Sum_probs=65.7
Q ss_pred EEEEECCCCCCcccCch------hhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCc
Q 041736 124 VAGIDLNHGDIASYLPE------ELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLK 197 (500)
Q Consensus 124 l~~L~L~~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 197 (500)
++.++++.+.+.|.++. .|..+++|++|+|++|.+++ ++ .+.++++|++|+|++|+++ .++..+..+++|+
T Consensus 20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~ 96 (198)
T 1ds9_A 20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96 (198)
T ss_dssp CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS
T ss_pred ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCC
Confidence 44445555555555544 89999999999999999996 67 8999999999999999998 6777777778888
Q ss_pred EEeccCCcCC
Q 041736 198 FLDLRYNEFE 207 (500)
Q Consensus 198 ~L~Ls~N~l~ 207 (500)
+|+|++|+++
T Consensus 97 ~L~L~~N~l~ 106 (198)
T 1ds9_A 97 ELWISYNQIA 106 (198)
T ss_dssp EEEEEEEECC
T ss_pred EEECcCCcCC
Confidence 8888888876
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=8.5e-14 Score=126.24 Aligned_cols=128 Identities=23% Similarity=0.305 Sum_probs=93.3
Q ss_pred CEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccc
Q 041736 173 FELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKF 252 (500)
Q Consensus 173 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l 252 (500)
+++++++|.++ .+|..+. .+|++|+|++|+++ .++..+.. ..+|++|+|++|.+
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~----------------------l~~L~~L~Ls~N~i 66 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSN----------------------YKHLTLIDLSNNRI 66 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGG----------------------CTTCCEEECCSSCC
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhc----------------------ccCCCEEECCCCcC
Confidence 56777777777 5555442 46777777777776 44432221 24566666666666
Q ss_pred cccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCC
Q 041736 253 HGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSG 327 (500)
Q Consensus 253 ~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g 327 (500)
++..+..|..+.+ |++|+|++|.+++..+..|..+++|++|+|++|+|++..+..+..+++|+.|+|++|.+..
T Consensus 67 ~~i~~~~f~~l~~-L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 67 STLSNQSFSNMTQ-LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCCTTTTTTCTT-CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CEeCHhHccCCCC-CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 6666667778886 8889999998888777788888899999999999886555568888889999999988864
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=9.1e-14 Score=124.02 Aligned_cols=57 Identities=28% Similarity=0.356 Sum_probs=27.6
Q ss_pred CcEEEeccCCCCCCCcc--ccccCCCccEEeccCcccCCCChhh----hhCCCCCcEEEcccCCC
Q 041736 267 LNEVILTNNGLHSCLPE--EIGLLKNVTVFDVSYNKLMGELPDT----IAEMTSLQQLNVAHNML 325 (500)
Q Consensus 267 L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~----l~~l~~L~~L~L~~N~l 325 (500)
|++|++++|.++. ++. .+..+++|++|++++|.++ .++.. +..+++|++|++++|.+
T Consensus 90 L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 5555555555533 232 4445555555555555554 23332 44555555555555544
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=3.2e-14 Score=127.01 Aligned_cols=133 Identities=20% Similarity=0.223 Sum_probs=92.3
Q ss_pred ccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcE
Q 041736 190 VLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNE 269 (500)
Q Consensus 190 l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~ 269 (500)
+.++.+|++|++++|+++ .++...... .+|++|++++|.+++. ..+..+.+ |++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~----------------------~~L~~L~Ls~N~l~~~--~~l~~l~~-L~~ 68 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATL----------------------DQFDAIDFSDNEIRKL--DGFPLLRR-LKT 68 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGT----------------------TCCSEEECCSSCCCEE--CCCCCCSS-CCE
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcC----------------------CCCCEEECCCCCCCcc--cccccCCC-CCE
Confidence 445667777777777766 333211111 1344455555555432 45666775 888
Q ss_pred EEeccCCCCCCCccccccCCCccEEeccCcccCCCChh--hhhCCCCCcEEEcccCCCCCCCchh----hcCCCCCcEEE
Q 041736 270 VILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPD--TIAEMTSLQQLNVAHNMLSGTVPDS----VCSLPNLRNFS 343 (500)
Q Consensus 270 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~L~~N~l~g~ip~~----l~~l~~L~~L~ 343 (500)
|++++|.+++..+..+..+++|++|+|++|+|+ .++. .+..+++|+.|+|++|.++ .++.. +..+++|++||
T Consensus 69 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 69 LLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp EECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred EECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeC
Confidence 899988888754455588889999999999886 5665 7788888999999999887 45553 77888888888
Q ss_pred ccCCcCc
Q 041736 344 FDYNFFT 350 (500)
Q Consensus 344 Ls~N~l~ 350 (500)
+++|.+.
T Consensus 147 ~~~n~~~ 153 (176)
T 1a9n_A 147 FQKVKLK 153 (176)
T ss_dssp TEECCHH
T ss_pred CCcCCHH
Confidence 8888764
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=2.2e-13 Score=120.85 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=87.5
Q ss_pred cceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcc
Q 041736 242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVA 321 (500)
Q Consensus 242 L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 321 (500)
.+.+++++|+++ .+|..+. . +|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..+..+++|++|+|+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~-~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--T-TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--C-CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 456777777776 3565553 3 48899999999998878888899999999999999987666677888999999999
Q ss_pred cCCCCCCCchhhcCCCCCcEEEccCCcCccCCC
Q 041736 322 HNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESP 354 (500)
Q Consensus 322 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p 354 (500)
+|+|++..+..|..+++|++|+|++|.|++..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999987666678888999999999998876543
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=5.1e-13 Score=118.92 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=84.7
Q ss_pred cceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcc
Q 041736 242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVA 321 (500)
Q Consensus 242 L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 321 (500)
.+.+++++|++. .+|..+. . +|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..+.++++|++|+|+
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--T-DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC--C-CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 356777777775 5666554 3 48888999998888778888888899999999999886555567888899999999
Q ss_pred cCCCCCCCchhhcCCCCCcEEEccCCcCccCC
Q 041736 322 HNMLSGTVPDSVCSLPNLRNFSFDYNFFTGES 353 (500)
Q Consensus 322 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~ 353 (500)
+|+|++..+..|..+++|++|+|++|.|....
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 99888655556888889999999998887653
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.42 E-value=2.8e-13 Score=133.54 Aligned_cols=218 Identities=9% Similarity=0.060 Sum_probs=157.7
Q ss_pred CcEEEEECCCCCCc--------------------ccCchhhcC--------CCCCCEEEcCCCCCCccCCccccCCCCCC
Q 041736 122 RTVAGIDLNHGDIA--------------------SYLPEELGL--------LADIALFHVNTNRFCGTLPRSFNKLKLLF 173 (500)
Q Consensus 122 ~~l~~L~L~~n~l~--------------------~~~p~~l~~--------l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 173 (500)
.+|+.|||++|.+. .+-...|.+ +.+|+.|+|.+ .++..-..+|.++.+|+
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~ 127 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLK 127 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCC
T ss_pred ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccc
Confidence 56777777777765 112235667 99999999999 88766667899999999
Q ss_pred EEeCcCCcCCCcCchhccCCCCCcEEeccCCcC----C----------------------CCCchhhc-----CCCCCeE
Q 041736 174 ELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEF----E----------------------GKIPKALF-----DKDLDAV 222 (500)
Q Consensus 174 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l----~----------------------g~~p~~~~-----~~~L~~L 222 (500)
+|+|++|.+.......|.++.++..+.+..+.. . +.++..++ ..+++.+
T Consensus 128 ~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l 207 (329)
T 3sb4_A 128 ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFL 207 (329)
T ss_dssp EEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEE
T ss_pred eEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceE
Confidence 999999998867777888887787777665321 1 01111111 1233333
Q ss_pred EccCCCccCCCCCcc--CCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCcc-EEeccCc
Q 041736 223 FINNNRFSFELPDNI--GNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVT-VFDVSYN 299 (500)
Q Consensus 223 ~l~~n~l~~~~p~~~--~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~-~L~Ls~n 299 (500)
.+.++-.... ...+ ...+|+.|+|.+|+++..-...|.++.+ |++|+|.+| +...-...|.++.+|+ .|++.+
T Consensus 208 ~~~~~l~~~~-~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~-L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 208 TIEGKLDNAD-FKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY-LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp EEEECCCHHH-HHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT-CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred EEeeeecHHH-HHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC-CCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 3332211000 0000 1367999999999998666678999987 999999998 7776678899999999 999998
Q ss_pred ccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEc
Q 041736 300 KLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSF 344 (500)
Q Consensus 300 ~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~L 344 (500)
+++..-...|.++.+|+.|++++|.++..-...|.++++|+.+..
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 777566688999999999999999999666678999999999864
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=1.4e-12 Score=115.54 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=85.5
Q ss_pred CeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCc
Q 041736 220 DAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYN 299 (500)
Q Consensus 220 ~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 299 (500)
+++++++|+++ .+|..+. .++++|+|++|.+++..+..|..+.+ |++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~-~~l~~L~L~~N~i~~~~~~~~~~l~~-L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP-TTTQVLYLYDNQITKLEPGVFDRLTQ-LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTT-CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC-CCCcEEEcCCCcCCccChhhhcCccc-CCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 34455555544 2444332 56788888888888777888888887 999999999999877777899999999999999
Q ss_pred ccCCCChhhhhCCCCCcEEEcccCCCCCCC
Q 041736 300 KLMGELPDTIAEMTSLQQLNVAHNMLSGTV 329 (500)
Q Consensus 300 ~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i 329 (500)
+|++..+..+..+++|++|+|++|.++...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999766667899999999999999988653
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=3e-12 Score=113.91 Aligned_cols=106 Identities=21% Similarity=0.253 Sum_probs=83.0
Q ss_pred CeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCc
Q 041736 220 DAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYN 299 (500)
Q Consensus 220 ~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 299 (500)
+.+++++|+++ .+|..+. .+|++|+|++|.+.+..+..|..+.+ |++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVN-LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcC-CCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34455555543 3444443 56778888888888777888888887 999999999999866666789999999999999
Q ss_pred ccCCCChhhhhCCCCCcEEEcccCCCCCC
Q 041736 300 KLMGELPDTIAEMTSLQQLNVAHNMLSGT 328 (500)
Q Consensus 300 ~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 328 (500)
+|++..+..+..+++|++|+|++|.+...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 99966555688999999999999998744
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.35 E-value=2.5e-11 Score=122.64 Aligned_cols=193 Identities=12% Similarity=0.074 Sum_probs=76.3
Q ss_pred CCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcC--CCCCeEEc
Q 041736 147 DIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLDAVFI 224 (500)
Q Consensus 147 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~--~~L~~L~l 224 (500)
+|+.+.|.+ .++..-..+|.++.+|+.++|.+|+++..-...|. ..+|+.+.|..+ ++ .+....|. .+|+.+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEec
Confidence 344444443 33322333444444444444444444422222232 344444444422 22 23332222 34444444
Q ss_pred cCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCC-----CCCccccccCCCccEEeccCc
Q 041736 225 NNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLH-----SCLPEEIGLLKNVTVFDVSYN 299 (500)
Q Consensus 225 ~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~Ls~n 299 (500)
.++ ++..-...+...+|+.+.+. +.+...-...|.++.+ |+.+++.+|.+. ..-...|.++.+|+.++|.+
T Consensus 234 ~~~-l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~-L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPE-LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE- 309 (401)
T ss_dssp CTT-CCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTT-CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred CCC-ccCccccccccCCccEEEeC-CCccEEChhHhhCCCC-CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence 432 22111122222344444442 2233222344444443 555555444433 12223444445555555542
Q ss_pred ccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcC
Q 041736 300 KLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFF 349 (500)
Q Consensus 300 ~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 349 (500)
.++..-...|.++.+|+.|+|..| ++..-...|.++ +|+.+++++|.+
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 233222334444455555555332 332222334444 455555554443
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=5.9e-14 Score=140.52 Aligned_cols=164 Identities=19% Similarity=0.222 Sum_probs=90.6
Q ss_pred CCCCCEEEcCCCCCCccCCccccCC-----CCCCEEeCcCCcCCCcCchhc-cCCCCCcEEeccCCcCCCCCchhhcCCC
Q 041736 145 LADIALFHVNTNRFCGTLPRSFNKL-----KLLFELDLSNNRFAGKFPYVV-LGLPKLKFLDLRYNEFEGKIPKALFDKD 218 (500)
Q Consensus 145 l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~g~~p~~~~~~~ 218 (500)
+.+|++|+|++|.|+......|..+ .+|++|+|++|.++......+ ..+.+|++|+|++|.++......+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~-- 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD-- 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH--
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH--
Confidence 3567888888888775433333322 578888888887764322222 23456777777777765322222110
Q ss_pred CCeEEccCCCccCCCCCcc--CCCCcceEEecccccccc----CchhhhcccccCcEEEeccCCCCCC----CccccccC
Q 041736 219 LDAVFINNNRFSFELPDNI--GNSPVSVLVLANNKFHGC----LPLSFGNMSRTLNEVILTNNGLHSC----LPEEIGLL 288 (500)
Q Consensus 219 L~~L~l~~n~l~~~~p~~~--~~~~L~~L~l~~n~l~~~----~p~~l~~l~~~L~~L~Ls~n~l~~~----~p~~~~~l 288 (500)
.+ ....|++|+|++|.++.. +...+..... |++|+|++|.|++. +...+...
T Consensus 149 -----------------~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~-L~~L~Ls~N~l~~~g~~~L~~~L~~~ 210 (372)
T 3un9_A 149 -----------------LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS-VTHLSLLHTGLGDEGLELLAAQLDRN 210 (372)
T ss_dssp -----------------HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSS-CCEEECTTSSCHHHHHHHHHHHGGGC
T ss_pred -----------------HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCC-cCEEeCCCCCCCcHHHHHHHHHHhcC
Confidence 00 012344455555544321 2233344554 77777777776542 23445566
Q ss_pred CCccEEeccCcccCCC----ChhhhhCCCCCcEEEcccCCCCCC
Q 041736 289 KNVTVFDVSYNKLMGE----LPDTIAEMTSLQQLNVAHNMLSGT 328 (500)
Q Consensus 289 ~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~ 328 (500)
++|++|||++|.|++. +...+...++|++|+|++|.|++.
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 6777777777777642 233344556777777777777643
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=1.8e-11 Score=121.30 Aligned_cols=104 Identities=18% Similarity=0.180 Sum_probs=66.1
Q ss_pred eEEeccc-cccccCchhhhcccccCcEEEecc-CCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcc
Q 041736 244 VLVLANN-KFHGCLPLSFGNMSRTLNEVILTN-NGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVA 321 (500)
Q Consensus 244 ~L~l~~n-~l~~~~p~~l~~l~~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 321 (500)
.++++++ +++ .+|. |..+.+ |++|+|++ |.|++..+..|.++.+|++|+|++|+|++..+..|.++++|++|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~-L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAEN-LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSC-CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCC-eeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3455555 555 3555 666665 77777764 67766655666777777777777777776666666777777777777
Q ss_pred cCCCCCCCchhhcCCCCCcEEEccCCcCcc
Q 041736 322 HNMLSGTVPDSVCSLPNLRNFSFDYNFFTG 351 (500)
Q Consensus 322 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 351 (500)
+|+|++..+..+..+. |++|+|.+|.|..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 7777644444444443 6777777776654
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=4.7e-13 Score=133.97 Aligned_cols=162 Identities=22% Similarity=0.182 Sum_probs=110.7
Q ss_pred CCCCCEEeCcCCcCCCcCchh----cc-CCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcc
Q 041736 169 LKLLFELDLSNNRFAGKFPYV----VL-GLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVS 243 (500)
Q Consensus 169 l~~L~~L~Ls~n~l~~~~p~~----l~-~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~ 243 (500)
+..|++|+|++|.++...... +. ...+|++|+|++|.++......+.. ...+|+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~---------------------~L~~L~ 129 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP---------------------VFLRAR 129 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH---------------------HHHTEE
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH---------------------HHHhcc
Confidence 456888999988887543332 22 2268888888888876322222111 002355
Q ss_pred eEEeccccccccCchhhh-----cccccCcEEEeccCCCCCC----CccccccCCCccEEeccCcccCCC----Chhhhh
Q 041736 244 VLVLANNKFHGCLPLSFG-----NMSRTLNEVILTNNGLHSC----LPEEIGLLKNVTVFDVSYNKLMGE----LPDTIA 310 (500)
Q Consensus 244 ~L~l~~n~l~~~~p~~l~-----~l~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~ 310 (500)
.|+|++|.++......+. ... +|++|+|++|.|++. +...+..+++|++|||++|.|++. +...+.
T Consensus 130 ~L~Ls~n~l~~~~~~~L~~~L~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~ 208 (372)
T 3un9_A 130 KLGLQLNSLGPEACKDLRDLLLHDQC-QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD 208 (372)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHSTTC-CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG
T ss_pred HhhcCCCCCCHHHHHHHHHHHHhcCC-ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh
Confidence 566666665543333332 234 499999999999752 445557889999999999999853 345667
Q ss_pred CCCCCcEEEcccCCCCCC----CchhhcCCCCCcEEEccCCcCccC
Q 041736 311 EMTSLQQLNVAHNMLSGT----VPDSVCSLPNLRNFSFDYNFFTGE 352 (500)
Q Consensus 311 ~l~~L~~L~L~~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~ 352 (500)
...+|++|+|++|.|++. +...+...++|++|||++|.|++.
T Consensus 209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 788999999999999853 444566778999999999999753
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.23 E-value=1.3e-10 Score=117.40 Aligned_cols=217 Identities=11% Similarity=0.094 Sum_probs=162.9
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL 201 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 201 (500)
.+|+.++|.. .+..+-...|.++.+|+.++|.+|.++..-...|. ..+|+.+.|.++ ++..-...|.++.+|+.++|
T Consensus 157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 3578888876 66666667899999999999999999855555565 689999999855 77566778999999999999
Q ss_pred cCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCcc-CCCCcceEEecccccc-----ccCchhhhcccccCcEEEecc
Q 041736 202 RYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNI-GNSPVSVLVLANNKFH-----GCLPLSFGNMSRTLNEVILTN 274 (500)
Q Consensus 202 s~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~-~~~~L~~L~l~~n~l~-----~~~p~~l~~l~~~L~~L~Ls~ 274 (500)
..| ++ .+....|. .+|+.+.+. +.++..-...+ +..+|+.+++.+|.+. ..-...|..+.+ |+.++|.
T Consensus 234 ~~~-l~-~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~-L~~l~l~- 308 (401)
T 4fdw_A 234 PEN-VS-TIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK-LARFEIP- 308 (401)
T ss_dssp CTT-CC-EECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT-CCEECCC-
T ss_pred CCC-cc-CccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc-CCeEEeC-
Confidence 875 44 45544444 789999994 44442223333 3468999999988765 344567888887 9999999
Q ss_pred CCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCC-CCcEEEccCCc
Q 041736 275 NGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLP-NLRNFSFDYNF 348 (500)
Q Consensus 275 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~-~L~~L~Ls~N~ 348 (500)
+++...-...|.++.+|+.|+|..| ++..-...|.++ +|+.|++++|.+.......|..++ +++.|.+-.|.
T Consensus 309 ~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 309 ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 4577666678999999999999665 664556678888 999999999988755555566663 56677666554
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=3.4e-11 Score=119.36 Aligned_cols=101 Identities=16% Similarity=0.186 Sum_probs=76.3
Q ss_pred ECCCC-CCcccCchhhcCCCCCCEEEcCC-CCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCc
Q 041736 128 DLNHG-DIASYLPEELGLLADIALFHVNT-NRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNE 205 (500)
Q Consensus 128 ~L~~n-~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 205 (500)
+++++ ++++ +|. |..+++|++|+|++ |.|++..+..|.+|.+|++|+|++|+|++..+..|.+|++|++|+|++|+
T Consensus 14 ~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 44455 5654 677 88888888888885 88887777788888888888888888888888888888888888888888
Q ss_pred CCCCCchhhcC-CCCCeEEccCCCccC
Q 041736 206 FEGKIPKALFD-KDLDAVFINNNRFSF 231 (500)
Q Consensus 206 l~g~~p~~~~~-~~L~~L~l~~n~l~~ 231 (500)
|++ ++...+. ..|++|+|.+|.+..
T Consensus 92 l~~-~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LES-LSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CSC-CCSTTTCSCCCCEEECCSSCCCC
T ss_pred cce-eCHHHcccCCceEEEeeCCCccC
Confidence 884 4443333 447777777777653
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=7.1e-10 Score=110.09 Aligned_cols=203 Identities=15% Similarity=0.192 Sum_probs=107.1
Q ss_pred CcEEEEECCCCCCcc-c-------CchhhcCCCCCCEEEcCCCCCC---------ccCCccccCCCCCCEEeCcCCcCCC
Q 041736 122 RTVAGIDLNHGDIAS-Y-------LPEELGLLADIALFHVNTNRFC---------GTLPRSFNKLKLLFELDLSNNRFAG 184 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~-~-------~p~~l~~l~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~Ls~n~l~~ 184 (500)
.+|+.|.+......+ . +...+..+++|+.|.|.++... +.+...+..+++|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 445566666544332 1 1223445678888888665331 123344566677777777776311
Q ss_pred cCchhccCCCCCcEEeccCCcCCCCCchhhc---CCCCCeEEccC--CCccCCCCCccCCCCcceEEeccccccccCchh
Q 041736 185 KFPYVVLGLPKLKFLDLRYNEFEGKIPKALF---DKDLDAVFINN--NRFSFELPDNIGNSPVSVLVLANNKFHGCLPLS 259 (500)
Q Consensus 185 ~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~---~~~L~~L~l~~--n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~ 259 (500)
.++. + .+.+|++|+|..+.+....-..+. .++|++|+|+. |...+.. .+. .+...
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~-----------------~~~-~l~~~ 245 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG-----------------DMN-VFRPL 245 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS-----------------CGG-GTGGG
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch-----------------hHH-HHHHH
Confidence 2222 2 266777777777766532222222 25666666532 1111100 000 00011
Q ss_pred h--hcccccCcEEEeccCCCCCCCccccc---cCCCccEEeccCcccCCC----ChhhhhCCCCCcEEEcccCCCCCCCc
Q 041736 260 F--GNMSRTLNEVILTNNGLHSCLPEEIG---LLKNVTVFDVSYNKLMGE----LPDTIAEMTSLQQLNVAHNMLSGTVP 330 (500)
Q Consensus 260 l--~~l~~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~ip 330 (500)
+ ..+++ |++|+|++|.+.+.....+. .+++|++|||+.|.|++. +...+..+++|+.|+|++|.|++..-
T Consensus 246 l~~~~~p~-Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 246 FSKDRFPN-LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp SCTTTCTT-CCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred HhcCCCCC-cCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 1 12344 77777777777643322222 467788888888887753 23333456788888888887765433
Q ss_pred hhhcC-CCCCcEEEccCCc
Q 041736 331 DSVCS-LPNLRNFSFDYNF 348 (500)
Q Consensus 331 ~~l~~-l~~L~~L~Ls~N~ 348 (500)
..+.. + ...++++.|.
T Consensus 325 ~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 325 KELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHC--CSEEECCSBC
T ss_pred HHHHHHc--CCEEEecCCc
Confidence 33332 2 3567787776
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=2.9e-09 Score=105.70 Aligned_cols=197 Identities=12% Similarity=0.153 Sum_probs=118.1
Q ss_pred CCCCEEEcCCCCCCc-cC-------CccccCCCCCCEEeCcCCcCC---------CcCchhccCCCCCcEEeccCCcCCC
Q 041736 146 ADIALFHVNTNRFCG-TL-------PRSFNKLKLLFELDLSNNRFA---------GKFPYVVLGLPKLKFLDLRYNEFEG 208 (500)
Q Consensus 146 ~~L~~L~L~~n~l~~-~~-------p~~l~~l~~L~~L~Ls~n~l~---------~~~p~~l~~l~~L~~L~Ls~N~l~g 208 (500)
..++.|.+....+.| .. ..++..+++|+.|.|..+... +.+...+..+++|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 467788888666542 21 233456788888888665331 123344555667777777665210
Q ss_pred CCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhh--cccccCcEEEecc--CCCCCC----
Q 041736 209 KIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFG--NMSRTLNEVILTN--NGLHSC---- 280 (500)
Q Consensus 209 ~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~--~l~~~L~~L~Ls~--n~l~~~---- 280 (500)
.+ +. +...+|+.|+|..+.+.......+. .+++ |++|+|+. |...+.
T Consensus 186 ~l-----------------------~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~-L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 186 SI-----------------------GK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPN-LEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp BC-----------------------CS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTT-CCEEEEECBCGGGTCCSCGG
T ss_pred ee-----------------------cc-ccCCCCcEEEEecCCCChHHHHHHHHccCCC-CcEEEEeccccccccchhHH
Confidence 11 11 2234566677666665543333443 4565 88888853 221111
Q ss_pred -Ccccc--ccCCCccEEeccCcccCCCChhhhh---CCCCCcEEEcccCCCCCC----CchhhcCCCCCcEEEccCCcCc
Q 041736 281 -LPEEI--GLLKNVTVFDVSYNKLMGELPDTIA---EMTSLQQLNVAHNMLSGT----VPDSVCSLPNLRNFSFDYNFFT 350 (500)
Q Consensus 281 -~p~~~--~~l~~L~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~L~~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~ 350 (500)
+...+ ..+++|++|+|++|.+.+.....+. .+++|++|+|+.|.+.+. +...+..+++|+.|+|++|.++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 11122 3578999999999998754444443 578899999999998863 3444456789999999999887
Q ss_pred cCCCCCc-c-C-CEEEcCCCC
Q 041736 351 GESPVCL-D-L-QGFDDKRNC 368 (500)
Q Consensus 351 g~~p~~~-~-L-~~l~l~~N~ 368 (500)
...-... . + ..++++.+.
T Consensus 321 d~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 321 DEMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHHCCSEEECCSBC
T ss_pred HHHHHHHHHHcCCEEEecCCc
Confidence 5421111 1 2 456777765
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.51 E-value=3.7e-08 Score=88.12 Aligned_cols=87 Identities=16% Similarity=0.158 Sum_probs=58.3
Q ss_pred CcEEEEECCCC-CCccc----CchhhcCCCCCCEEEcCCCCCCcc----CCccccCCCCCCEEeCcCCcCCCc----Cch
Q 041736 122 RTVAGIDLNHG-DIASY----LPEELGLLADIALFHVNTNRFCGT----LPRSFNKLKLLFELDLSNNRFAGK----FPY 188 (500)
Q Consensus 122 ~~l~~L~L~~n-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~ 188 (500)
.+|++|+|++| .+... +...+...++|++|+|++|.|... +...+....+|++|+|++|.|+.. +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 56778888887 77532 334556677788888888877632 334455567788888888877743 345
Q ss_pred hccCCCCCcEEec--cCCcCCC
Q 041736 189 VVLGLPKLKFLDL--RYNEFEG 208 (500)
Q Consensus 189 ~l~~l~~L~~L~L--s~N~l~g 208 (500)
.+...++|++|+| ++|.+..
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHhCCCceEEEecCCCCCCCH
Confidence 5666677778887 6677763
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=2.6e-08 Score=89.20 Aligned_cols=84 Identities=15% Similarity=0.260 Sum_probs=45.2
Q ss_pred CcEEEeccCCCCCC----CccccccCCCccEEeccCcccCCC----ChhhhhCCCCCcEEEc--ccCCCCCC----Cchh
Q 041736 267 LNEVILTNNGLHSC----LPEEIGLLKNVTVFDVSYNKLMGE----LPDTIAEMTSLQQLNV--AHNMLSGT----VPDS 332 (500)
Q Consensus 267 L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L--~~N~l~g~----ip~~ 332 (500)
|++|+|++|.+.+. +...+...++|++|+|++|.|++. +...+....+|++|+| ++|.|... +...
T Consensus 67 L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~ 146 (185)
T 1io0_A 67 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM 146 (185)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH
T ss_pred cCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH
Confidence 66666666665532 223344445666666666666532 2334455556666666 55666532 2333
Q ss_pred hcCCCCCcEEEccCCcCc
Q 041736 333 VCSLPNLRNFSFDYNFFT 350 (500)
Q Consensus 333 l~~l~~L~~L~Ls~N~l~ 350 (500)
+...++|++|+|++|.+.
T Consensus 147 L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 147 LEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHCSSCCEEECCCSSHH
T ss_pred HHhCCCcCEEeccCCCCC
Confidence 444556666666666553
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.45 E-value=2.3e-06 Score=85.94 Aligned_cols=214 Identities=13% Similarity=0.079 Sum_probs=106.5
Q ss_pred hhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhh-cCCCC
Q 041736 141 ELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKAL-FDKDL 219 (500)
Q Consensus 141 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~-~~~~L 219 (500)
+|.++.+|+.+.+.++..+ .-...|.++.+|+.+++..+ ++......|.++..|+.+.+..+... +.... ...+|
T Consensus 157 aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l 232 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGV 232 (394)
T ss_dssp TTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCC
T ss_pred hhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCC
Confidence 4555666666666544322 33345556666666666554 33233345555566665555444321 11111 12455
Q ss_pred CeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCc
Q 041736 220 DAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYN 299 (500)
Q Consensus 220 ~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 299 (500)
+.+.+..+...-.--.+.+...++.+.+..+... .....|..... ++.+.+..+.+.. ..+..+.+|+.+.+..+
T Consensus 233 ~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~-l~~~~~~~~~i~~---~~F~~~~~L~~i~l~~~ 307 (394)
T 4fs7_A 233 KNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSG-LKKVIYGSVIVPE---KTFYGCSSLTEVKLLDS 307 (394)
T ss_dssp CEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTT-CCEEEECSSEECT---TTTTTCTTCCEEEECTT
T ss_pred ceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccc-cceeccCceeecc---ccccccccccccccccc
Confidence 5555543221100011122244566665544322 22334444444 6666555544322 34566677777777554
Q ss_pred ccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccC----CCCCccCCEEEcCC
Q 041736 300 KLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGE----SPVCLDLQGFDDKR 366 (500)
Q Consensus 300 ~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~----~p~~~~L~~l~l~~ 366 (500)
++..-...|.++.+|+.++|.++ ++..-...|.++.+|+.+++..| ++.. .-.|.+|+.+++..
T Consensus 308 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 308 -VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred -cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 44233445667777777777543 44222456777777777777655 3322 22344566666643
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.44 E-value=3.4e-06 Score=84.75 Aligned_cols=104 Identities=12% Similarity=0.171 Sum_probs=52.0
Q ss_pred hhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCC
Q 041736 259 SFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPN 338 (500)
Q Consensus 259 ~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~ 338 (500)
.|..... |+.+.+.++... .-...|.++.+|+.+++.. .++..-...|.++.+|+.++|..+ ++..-...|.++.+
T Consensus 260 aF~~c~~-L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 260 AFDSCAY-LASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTCSS-CCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred eeeeccc-ccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 3444454 666666543321 1234455666666666642 333233345556666666666543 33222345666666
Q ss_pred CcEEEccCCcCc----cCCCCCccCCEEEcCCC
Q 041736 339 LRNFSFDYNFFT----GESPVCLDLQGFDDKRN 367 (500)
Q Consensus 339 L~~L~Ls~N~l~----g~~p~~~~L~~l~l~~N 367 (500)
|+.+.+..+ ++ +..-.|.+|+.+++.++
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 666666443 22 11223445666666544
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.43 E-value=2.4e-06 Score=85.88 Aligned_cols=217 Identities=15% Similarity=0.134 Sum_probs=147.5
Q ss_pred CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCc
Q 041736 118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLK 197 (500)
Q Consensus 118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 197 (500)
+....+|+.+++.++ +...-...|.++.+|+.+++..+ ++..-...|.++..|+.+.+..+... +........+|+
T Consensus 158 F~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~ 233 (394)
T 4fs7_A 158 FATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVK 233 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCC
T ss_pred hcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCc
Confidence 445577889998765 34444567889999999999877 54445567888999999988776543 233344557888
Q ss_pred EEeccCCcCCCCCchhhcC--CCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccC
Q 041736 198 FLDLRYNEFEGKIPKALFD--KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNN 275 (500)
Q Consensus 198 ~L~Ls~N~l~g~~p~~~~~--~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n 275 (500)
.+.+..+. + .+....+. ..|+.+.+..+...-....+.....++.+.+..+.+. ...|....+ |+.+.+.++
T Consensus 234 ~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~-L~~i~l~~~ 307 (394)
T 4fs7_A 234 NIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSS-LTEVKLLDS 307 (394)
T ss_dssp EEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTT-CCEEEECTT
T ss_pred eEEECCCc-e-ecccccccccccceeEEcCCCcceeeccccccccccceeccCceeec---ccccccccc-ccccccccc
Confidence 88876442 2 23333332 6788888876654422222233356777766655433 245666775 999998754
Q ss_pred CCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCC
Q 041736 276 GLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYN 347 (500)
Q Consensus 276 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N 347 (500)
+...-..+|.++.+|+.++|..+ ++..-...|.++.+|+.+++..| ++..-...|.++.+|+.+++..+
T Consensus 308 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 308 -VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred -cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 55444567889999999999754 55344567888999999999876 65344567889999999998765
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=1e-07 Score=89.98 Aligned_cols=80 Identities=24% Similarity=0.316 Sum_probs=58.2
Q ss_pred hcccccCcEEEeccCCCCC--CCccccccCCCccEEeccCcccCCCChhhhhCCC--CCcEEEcccCCCCCCCch-----
Q 041736 261 GNMSRTLNEVILTNNGLHS--CLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMT--SLQQLNVAHNMLSGTVPD----- 331 (500)
Q Consensus 261 ~~l~~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~L~~N~l~g~ip~----- 331 (500)
.++.. |++|+|++|+|++ .++..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+.++.
T Consensus 167 ~~l~~-L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPE-LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTT-CCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCC-CCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 44565 8888888888887 3456667888888888888888854 3344444 888888888888876552
Q ss_pred --hhcCCCCCcEEE
Q 041736 332 --SVCSLPNLRNFS 343 (500)
Q Consensus 332 --~l~~l~~L~~L~ 343 (500)
.+..+++|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 356778888775
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=6.5e-07 Score=84.42 Aligned_cols=95 Identities=19% Similarity=0.106 Sum_probs=65.4
Q ss_pred EECCCCCC---cccCchhhcCCCCCCEEEcCCCCCCc--cCCccccCCCCCCEEeCcCCcCCCcCchhccCCC--CCcEE
Q 041736 127 IDLNHGDI---ASYLPEELGLLADIALFHVNTNRFCG--TLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLP--KLKFL 199 (500)
Q Consensus 127 L~L~~n~l---~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L 199 (500)
++++.|.. .+.+.....++++|++|+|++|.|++ .++..+..+++|++|+|++|+|++. ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 56666632 22222233568889999999999987 4556777889999999999999864 2333333 89999
Q ss_pred eccCCcCCCCCchh------hc--CCCCCeEE
Q 041736 200 DLRYNEFEGKIPKA------LF--DKDLDAVF 223 (500)
Q Consensus 200 ~Ls~N~l~g~~p~~------~~--~~~L~~L~ 223 (500)
+|++|.+.+.++.. +. .++|+.|+
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 99999988766531 11 16777765
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.24 E-value=2.8e-05 Score=77.93 Aligned_cols=77 Identities=5% Similarity=0.031 Sum_probs=40.2
Q ss_pred EEEEECCCCCCcccCchhhcCCCCCCEEEcCCCC---CCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736 124 VAGIDLNHGDIASYLPEELGLLADIALFHVNTNR---FCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD 200 (500)
Q Consensus 124 l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 200 (500)
|+.+.+..+ ++.+-..+|.++.+|+.+.+..|. ++..-..+|.++.+|+.+.+..+ ++......|..+.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 566666543 444444567777777777776543 33222344555555655555433 2223333445555555555
Q ss_pred cc
Q 041736 201 LR 202 (500)
Q Consensus 201 Ls 202 (500)
+.
T Consensus 144 lp 145 (394)
T 4gt6_A 144 IP 145 (394)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.00 E-value=0.00034 Score=69.43 Aligned_cols=87 Identities=10% Similarity=0.072 Sum_probs=50.9
Q ss_pred hhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCC
Q 041736 258 LSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLP 337 (500)
Q Consensus 258 ~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~ 337 (500)
..|..... |+.+.+..+ ++..-...+.++.+|+.+++..+ ++..-...+.++.+|+.+.+.++.++..-...|.++.
T Consensus 234 ~~f~~~~~-L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 234 GAFYGMKA-LDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTTCSS-CCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred ccccCCcc-ceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence 34445554 666666544 33333345666667777776543 3323334566677777777777666633345667777
Q ss_pred CCcEEEccCC
Q 041736 338 NLRNFSFDYN 347 (500)
Q Consensus 338 ~L~~L~Ls~N 347 (500)
+|+.++|..+
T Consensus 311 ~L~~i~lp~~ 320 (379)
T 4h09_A 311 KLSSVTLPTA 320 (379)
T ss_dssp TCCEEECCTT
T ss_pred CCCEEEcCcc
Confidence 7777777543
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=3.5e-06 Score=73.82 Aligned_cols=84 Identities=15% Similarity=0.105 Sum_probs=66.8
Q ss_pred CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCC-CCCccCCccccCC----CCCCEEeCcCCc-CCCcCchhccCCCC
Q 041736 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTN-RFCGTLPRSFNKL----KLLFELDLSNNR-FAGKFPYVVLGLPK 195 (500)
Q Consensus 122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l----~~L~~L~Ls~n~-l~~~~p~~l~~l~~ 195 (500)
-+|+.|||+++.++..--..+..+++|++|+|+++ .|++.--..++.+ .+|++|+|++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 46999999999987665566789999999999998 4775544556665 369999999985 87654456778999
Q ss_pred CcEEeccCCc
Q 041736 196 LKFLDLRYNE 205 (500)
Q Consensus 196 L~~L~Ls~N~ 205 (500)
|++|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999985
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.80 E-value=8.4e-06 Score=71.42 Aligned_cols=81 Identities=9% Similarity=0.081 Sum_probs=37.9
Q ss_pred CcEEEeccCCCCCCCccccccCCCccEEeccCcc-cCCCChhhhhCC----CCCcEEEcccCC-CCCCCchhhcCCCCCc
Q 041736 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNK-LMGELPDTIAEM----TSLQQLNVAHNM-LSGTVPDSVCSLPNLR 340 (500)
Q Consensus 267 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~L~~N~-l~g~ip~~l~~l~~L~ 340 (500)
|++||+++|.+++.--..+..+++|++|+|++|. |++.--..+..+ ++|++|+|++|. +++.--..+..+++|+
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~ 142 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK 142 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence 5555555555544333344455555555555552 443222333332 245555555542 4432223344555555
Q ss_pred EEEccCC
Q 041736 341 NFSFDYN 347 (500)
Q Consensus 341 ~L~Ls~N 347 (500)
+|+++++
T Consensus 143 ~L~L~~c 149 (176)
T 3e4g_A 143 YLFLSDL 149 (176)
T ss_dssp EEEEESC
T ss_pred EEECCCC
Confidence 5555554
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.64 E-value=2.1e-05 Score=70.21 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=38.7
Q ss_pred CcEEEeccCCCCCC----CccccccCCCccEEeccCcccCCC----ChhhhhCCCCCcEEEcccC---CCCC----CCch
Q 041736 267 LNEVILTNNGLHSC----LPEEIGLLKNVTVFDVSYNKLMGE----LPDTIAEMTSLQQLNVAHN---MLSG----TVPD 331 (500)
Q Consensus 267 L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N---~l~g----~ip~ 331 (500)
|++|+|++|.|.+. +.+.+..-+.|++|+|++|.|++. +-+.+.....|++|+|++| .+.. .+.+
T Consensus 72 L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~ 151 (197)
T 1pgv_A 72 IEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM 151 (197)
T ss_dssp CCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH
T ss_pred cCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH
Confidence 55566665555532 223333445566666666655531 2223334455666666543 2221 1233
Q ss_pred hhcCCCCCcEEEccCCc
Q 041736 332 SVCSLPNLRNFSFDYNF 348 (500)
Q Consensus 332 ~l~~l~~L~~L~Ls~N~ 348 (500)
.+...+.|+.|+++.|.
T Consensus 152 aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 152 AIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHCSSCCEEECCCCC
T ss_pred HHHhCCCcCeEeccCCC
Confidence 34444555555555443
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.64 E-value=2.6e-05 Score=69.59 Aligned_cols=83 Identities=12% Similarity=0.093 Sum_probs=54.6
Q ss_pred CcEEEEECCCC-CCccc----CchhhcCCCCCCEEEcCCCCCCcc----CCccccCCCCCCEEeCcCCcCCCc----Cch
Q 041736 122 RTVAGIDLNHG-DIASY----LPEELGLLADIALFHVNTNRFCGT----LPRSFNKLKLLFELDLSNNRFAGK----FPY 188 (500)
Q Consensus 122 ~~l~~L~L~~n-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~ 188 (500)
..|+.|+|++| .|... +-+.+..-+.|++|+|++|.|... +.+.+..-+.|++|+|++|.|... +..
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 45777888875 66432 345566677888888888888632 334444567788888888887743 334
Q ss_pred hccCCCCCcEEeccCC
Q 041736 189 VVLGLPKLKFLDLRYN 204 (500)
Q Consensus 189 ~l~~l~~L~~L~Ls~N 204 (500)
.+..-+.|++|+|++|
T Consensus 121 aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTTTCCCSEEECCCC
T ss_pred HHhhCCceeEEECCCC
Confidence 5555667888887755
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.56 E-value=0.0019 Score=64.00 Aligned_cols=105 Identities=10% Similarity=0.066 Sum_probs=76.9
Q ss_pred CCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEE
Q 041736 239 NSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQL 318 (500)
Q Consensus 239 ~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 318 (500)
...|+.+.+..+ ++..-...|.+... |+.+.+..+ +...-...|.++.+|+.+++.++.++..-...|.++.+|+.+
T Consensus 239 ~~~L~~i~lp~~-v~~I~~~aF~~~~~-l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 239 MKALDEIAIPKN-VTSIGSFLLQNCTA-LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp CSSCCEEEECTT-CCEECTTTTTTCTT-CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred CccceEEEcCCC-ccEeCccccceeeh-hcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 356788887654 44334456777776 999998654 544444678899999999999988875556678899999999
Q ss_pred EcccCCCCCCCchhhcCCCCCcEEEccCC
Q 041736 319 NVAHNMLSGTVPDSVCSLPNLRNFSFDYN 347 (500)
Q Consensus 319 ~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N 347 (500)
.|..+ ++..-...|.++.+|+.+.+..+
T Consensus 316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 316 TLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred EcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 99755 55333457889999998887654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.48 E-value=0.0049 Score=51.04 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=28.1
Q ss_pred EEECCCCCCc-ccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcC
Q 041736 126 GIDLNHGDIA-SYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRF 182 (500)
Q Consensus 126 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 182 (500)
.++.++++++ ..+|..+ -.+|++|+|++|+|+..-...|..+.+|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5666666665 2344322 12455555555555544344455555555555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.29 E-value=0.0054 Score=50.78 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=29.5
Q ss_pred EEEeccCCCC-CCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCC
Q 041736 269 EVILTNNGLH-SCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS 326 (500)
Q Consensus 269 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 326 (500)
.++.++++++ ..+|..+ -.+|++|+|++|+|+..-+..|..+.+|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566666665 1244322 124666666666666433344555555666666655543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=34.16 E-value=51 Score=25.02 Aligned_cols=38 Identities=18% Similarity=0.010 Sum_probs=16.7
Q ss_pred hhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCc
Q 041736 140 EELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLS 178 (500)
Q Consensus 140 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 178 (500)
..|.++.+|+.+.|-.+ ++..-..+|.++.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34455555555555443 221222344444555544443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=33.54 E-value=50 Score=25.06 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=35.9
Q ss_pred CCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCC
Q 041736 156 NRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYN 204 (500)
Q Consensus 156 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N 204 (500)
..++..-...|.++.+|+.+.|-.+ ++..-...|.++.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455455567889999999998765 44455678889999999988754
No 167
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=26.99 E-value=1.2e+02 Score=26.17 Aligned_cols=13 Identities=15% Similarity=0.092 Sum_probs=6.1
Q ss_pred CCcEEEcccCCCC
Q 041736 314 SLQQLNVAHNMLS 326 (500)
Q Consensus 314 ~L~~L~L~~N~l~ 326 (500)
.|+..++.+..|.
T Consensus 151 ~L~~a~f~~~~L~ 163 (214)
T 2w7z_A 151 TWXXLLLEACDLT 163 (214)
T ss_dssp EEEEEEEESCBCT
T ss_pred EEEEEEEEecccc
Confidence 3444445444444
No 168
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=26.10 E-value=1e+02 Score=26.70 Aligned_cols=94 Identities=9% Similarity=-0.033 Sum_probs=43.0
Q ss_pred CcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccC
Q 041736 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDY 346 (500)
Q Consensus 267 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~ 346 (500)
|+..++.++.+.+.. |.. ..|+..++.++.+.+. .+.. ..|+..++.++.+.+.- | .-.+|+..++.+
T Consensus 92 l~~~~f~~~~l~~a~---f~~-a~l~~~~f~~~~l~~a---~f~~-a~l~~~~f~~~~l~~a~---f-~~a~L~~a~f~~ 159 (214)
T 2w7z_A 92 FHRVTFLRCNLTGTN---FAD-SYLXDCLFEDCXADYA---SFRF-ANFNLVHFNQTRLVESE---F-FEVTWXXLLLEA 159 (214)
T ss_dssp EEEEEEESCBCTTCB---CTT-CEEEEEEEESCBCTTC---BCTT-CEEEEEEEESCBCTTCB---C-TTCEEEEEEEES
T ss_pred EEeeEEeCCeeeCCC---cCC-CEeeeeEEeCCCCCCC---cCCc-CccCceEEEecccCCCC---c-cCCEEEEEEEEe
Confidence 445555555555421 111 1244455555555432 1111 24555556665555321 1 123455666666
Q ss_pred CcCccCCCCCccCCEEEcCCCCCCCC
Q 041736 347 NFFTGESPVCLDLQGFDDKRNCLRDK 372 (500)
Q Consensus 347 N~l~g~~p~~~~L~~l~l~~N~l~~~ 372 (500)
..|.+..-....|+..++++..+.+.
T Consensus 160 ~~L~~a~f~~a~l~~~~l~~a~l~~~ 185 (214)
T 2w7z_A 160 CDLTESNWLNTSLXGLDFSQNTFERL 185 (214)
T ss_dssp CBCTTCBCTTCCCTTCBCTTSBCSCC
T ss_pred cccccCEecCCeeccCCcccCCcCce
Confidence 66655443333445555555555443
Done!