BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041737
(152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 23 REDNTAEGNEGNKRTKENLHSRTEKEIEGICEINRMVEDNSKQIVPPKYDLNA 75
R D+ + N R E L+ +TE +I+ + I +++ + K++ KY + A
Sbjct: 69 RYDDQLKQRRQNIRDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKA 121
>pdb|1WDD|S Chain S, Crystal Structure Of Activated Rice Rubisco Complexed
With 2- Carboxyarabinitol-1,5-Bisphosphate
pdb|1WDD|W Chain W, Crystal Structure Of Activated Rice Rubisco Complexed
With 2- Carboxyarabinitol-1,5-Bisphosphate
Length = 128
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
Query: 49 IEGICEINRM-------VEDNSKQIVPPKYDLNAKWDACIDLTVRRFVY 90
IEGI + + VED KQI +Y L +KW C++ + FVY
Sbjct: 6 IEGIKKFETLSYLPPLTVEDLLKQI---EYLLRSKWVPCLEFSKVGFVY 51
>pdb|3AXM|S Chain S, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|T Chain T, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|U Chain U, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|V Chain V, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|W Chain W, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|X Chain X, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|Y Chain Y, Structure Of Rice Rubisco In Complex With 6pg
pdb|3AXM|Z Chain Z, Structure Of Rice Rubisco In Complex With 6pg
Length = 129
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
Query: 49 IEGICEINRM-------VEDNSKQIVPPKYDLNAKWDACIDLTVRRFVY 90
IEGI + + VED KQI +Y L +KW C++ + FVY
Sbjct: 7 IEGIKKFETLSYLPPLTVEDLLKQI---EYLLRSKWVPCLEFSKVGFVY 52
>pdb|3USU|B Chain B, Crystal Structure Of Butea Monosperma Seed Lectin
pdb|3USU|D Chain D, Crystal Structure Of Butea Monosperma Seed Lectin
pdb|3USU|F Chain F, Crystal Structure Of Butea Monosperma Seed Lectin
pdb|3USU|H Chain H, Crystal Structure Of Butea Monosperma Seed Lectin
Length = 242
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 77 WDACIDLTVRRFVYSSLGGAF--AGLLFFRSPVTRWASVAFGAGLGIGSAYTDCSHFFDG 134
+D+ L V VY S +F + ++ +S + W S+ F A G S Y + F
Sbjct: 173 YDSSAKLLVAALVYPSSKTSFILSDVVDLKSVLPEWVSIGFSAATGASSGYIETHDVFSW 232
Query: 135 S-PSKLA 140
S SKL+
Sbjct: 233 SFASKLS 239
>pdb|3AXK|S Chain S, Structure Of Rice Rubisco In Complex With Nadp(H)
pdb|3AXK|T Chain T, Structure Of Rice Rubisco In Complex With Nadp(H)
Length = 129
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
Query: 49 IEGICEINRM-------VEDNSKQIVPPKYDLNAKWDACIDLTVRRFVY 90
IEGI + + VED KQI +Y L +KW C++ + FVY
Sbjct: 7 IEGIKKFETLSYLPPLTVEDLLKQI---EYLLRSKWVPCLEFSKVGFVY 52
>pdb|3USU|A Chain A, Crystal Structure Of Butea Monosperma Seed Lectin
pdb|3USU|C Chain C, Crystal Structure Of Butea Monosperma Seed Lectin
pdb|3USU|E Chain E, Crystal Structure Of Butea Monosperma Seed Lectin
pdb|3USU|G Chain G, Crystal Structure Of Butea Monosperma Seed Lectin
Length = 256
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 77 WDACIDLTVRRFVYSSLGGAF--AGLLFFRSPVTRWASVAFGAGLGIGSAYTDCSHFFDG 134
+D+ L V VY S +F + ++ +S + W S+ F A G S Y + F
Sbjct: 173 YDSSAKLLVAALVYPSSKTSFILSDVVDLKSVLPEWVSIGFSAATGASSGYIETHDVFSW 232
Query: 135 S-PSKLA 140
S SKL+
Sbjct: 233 SFASKLS 239
>pdb|3SLR|A Chain A, Crystal Structure Of N-Terminal Part Of The Protein Bf1531
From Bacteroides Fragilis Containing Phosphatase Domain
Complexed With Mg
Length = 387
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 110 WASVAFGAGLGIGSAYTDCSHF 131
W ++ G GLGIG A+T+ +
Sbjct: 243 WENIQVGHGLGIGKAFTEFQEW 264
>pdb|2FKM|X Chain X, Pmm/pgm S108d Mutant With Alpha-d-glucose 1,6-bisphosphate
Bound
Length = 462
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 17/63 (26%)
Query: 93 LGGAFAGLLFFRSPVTRWASVAFGAGLGIGSA----------YTDCSHFFDGSPSKLASP 142
L G +G +FF+ RW FG GI SA D H F PS +++P
Sbjct: 321 LAGEMSGHVFFKE---RW----FGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTP 373
Query: 143 KIS 145
+I+
Sbjct: 374 EIN 376
>pdb|1K2Y|X Chain X, Crystal Structure Of Phosphomannomutase/phosphoglucomutase
S108a Mutant From P. Aeruginosa
Length = 463
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 17/63 (26%)
Query: 93 LGGAFAGLLFFRSPVTRWASVAFGAGLGIGSA----------YTDCSHFFDGSPSKLASP 142
L G +G +FF+ RW FG GI SA D H F PS +++P
Sbjct: 322 LAGEMSGHVFFKE---RW----FGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTP 374
Query: 143 KIS 145
+I+
Sbjct: 375 EIN 377
>pdb|1P5D|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1P5G|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCJ|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCM|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
Length = 463
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 17/63 (26%)
Query: 93 LGGAFAGLLFFRSPVTRWASVAFGAGLGIGSA----------YTDCSHFFDGSPSKLASP 142
L G +G +FF+ RW FG GI SA D H F PS +++P
Sbjct: 322 LAGEMSGHVFFKE---RW----FGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTP 374
Query: 143 KIS 145
+I+
Sbjct: 375 EIN 377
>pdb|2H4L|X Chain X, Complex Of PmmPGM WITH RIBOSE 1-Phosphate
pdb|2H5A|X Chain X, Complex Of The Enzyme PmmPGM WITH XYLOSE 1-Phosphate
Length = 463
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 17/63 (26%)
Query: 93 LGGAFAGLLFFRSPVTRWASVAFGAGLGIGSA----------YTDCSHFFDGSPSKLASP 142
L G +G +FF+ RW FG GI SA D H F PS +++P
Sbjct: 322 LAGEMSGHVFFKE---RW----FGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTP 374
Query: 143 KIS 145
+I+
Sbjct: 375 EIN 377
>pdb|3RSM|A Chain A, Crystal Structure Of S108c Mutant Of PmmPGM
Length = 463
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 17/63 (26%)
Query: 93 LGGAFAGLLFFRSPVTRWASVAFGAGLGIGSA----------YTDCSHFFDGSPSKLASP 142
L G +G +FF+ RW FG GI SA D H F PS +++P
Sbjct: 322 LAGEMSGHVFFKE---RW----FGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTP 374
Query: 143 KIS 145
+I+
Sbjct: 375 EIN 377
>pdb|2FKF|A Chain A, PhosphomannomutasePHOSPHOGLUCOMUTASE FROM PSEUDOMONAS
AERUGINOSA WITH Alpha-D-Glucose 1,6-Bisphosphate Bound
Length = 462
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 17/63 (26%)
Query: 93 LGGAFAGLLFFRSPVTRWASVAFGAGLGIGSA----------YTDCSHFFDGSPSKLASP 142
L G +G +FF+ RW FG GI SA D H F PS +++P
Sbjct: 321 LAGEMSGHVFFKE---RW----FGFDDGIYSAARLLEILSQDQRDSEHVFSAFPSDISTP 373
Query: 143 KIS 145
+I+
Sbjct: 374 EIN 376
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,799,709
Number of Sequences: 62578
Number of extensions: 190438
Number of successful extensions: 283
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 13
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)