Query 041737
Match_columns 152
No_of_seqs 105 out of 172
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 10:07:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041737.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041737hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04418 DUF543: Domain of unk 100.0 4.8E-33 1E-37 198.0 1.6 73 58-133 1-75 (75)
2 KOG4604 Uncharacterized conser 99.9 1.9E-24 4.1E-29 159.9 3.1 69 65-136 9-77 (91)
3 KOG3225 Mitochondrial import i 43.8 10 0.00022 31.5 0.7 36 68-103 30-65 (168)
4 PRK15358 pathogenicity island 41.4 34 0.00075 29.6 3.5 59 70-130 27-88 (239)
5 PRK10132 hypothetical protein; 37.7 7.9 0.00017 29.3 -0.8 30 77-106 78-108 (108)
6 KOG3853 Inositol monophosphata 37.5 13 0.00028 33.6 0.4 21 73-93 282-302 (350)
7 PF05570 DUF765: Circovirus pr 36.3 19 0.00042 22.1 0.9 17 58-75 1-17 (29)
8 COG5336 Uncharacterized protei 28.9 8.6 0.00019 30.3 -1.8 62 54-123 23-89 (116)
9 COG4317 Uncharacterized protei 27.5 12 0.00025 28.5 -1.3 27 84-110 4-30 (93)
10 PF12597 DUF3767: Protein of u 27.3 16 0.00034 28.0 -0.7 50 80-133 39-92 (118)
11 PRK10404 hypothetical protein; 26.0 16 0.00034 27.3 -0.8 30 76-105 71-101 (101)
12 PF00746 Gram_pos_anchor: Gram 24.0 26 0.00056 21.1 0.0 18 89-106 22-39 (39)
No 1
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=99.97 E-value=4.8e-33 Score=197.97 Aligned_cols=73 Identities=38% Similarity=0.714 Sum_probs=66.8
Q ss_pred cccCCCC--CCCCChhHHHHHHHHHHHHHHHHhhhcccccceeeeeeecCCCccceeeeeccccccchhhhhhhhhcC
Q 041737 58 MVEDNSK--QIVPPKYDLNAKWDACIDLTVRRFVYSSLGGAFAGLLFFRSPVTRWASVAFGAGLGIGSAYTDCSHFFD 133 (152)
Q Consensus 58 m~~~~~~--~~ipSE~~L~eKWDrCLsdtl~K~g~G~l~Gvv~SLLFFRRr~~rWaPIafGtGFGlG~AYsnCq~~F~ 133 (152)
|+++.+. +++++|+++++|||+||+|+|+|+++|+++|+++|||||||| .| |+|||+|||+||||+|||++||
T Consensus 1 Ms~~~~~~~~~~~se~~~~~kwD~cl~~~l~k~~~G~~~G~~~s~l~frrR--~~-pv~lG~G~G~G~aY~~c~~~f~ 75 (75)
T PF04418_consen 1 MSEQPENVAPTPPSEDELGEKWDRCLSDTLVKTGLGFGIGVVFSLLFFRRR--AW-PVALGAGFGIGMAYSECQRDFN 75 (75)
T ss_pred CCCCCcCCCCCCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHccc--hH-HHHhhcccccchhHHHHHHhcC
Confidence 5555554 447999999999999999999999999999999999999997 67 9999999999999999999996
No 2
>KOG4604 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.89 E-value=1.9e-24 Score=159.88 Aligned_cols=69 Identities=28% Similarity=0.574 Sum_probs=65.8
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHhhhcccccceeeeeeecCCCccceeeeeccccccchhhhhhhhhcCCCC
Q 041737 65 QIVPPKYDLNAKWDACIDLTVRRFVYSSLGGAFAGLLFFRSPVTRWASVAFGAGLGIGSAYTDCSHFFDGSP 136 (152)
Q Consensus 65 ~~ipSE~~L~eKWDrCLsdtl~K~g~G~l~Gvv~SLLFFRRr~~rWaPIafGtGFGlG~AYsnCq~~F~~~~ 136 (152)
...++|+++++|||+||+|.++|.+.|+++|++++++||||+ .| |+|+|+|||+|+||.+||++|++.+
T Consensus 9 ~~~~~e~~~~~~~d~clad~l~kg~sg~~ig~v~s~~ffr~~--~w-piw~gtgvglGvay~~cq~~l~a~y 77 (91)
T KOG4604|consen 9 RSRNSESELGRKWDRCLADSLVKGGSGLGIGIVVSLLFFRRR--EW-PIWLGTGVGLGVAYSNCQARLNAVY 77 (91)
T ss_pred ccCCcHhhhhhhhhHHHHHHHhccCcceeeehhhhhhhhcce--ee-eeecCcccccchhhHHHHHHhccce
Confidence 345789999999999999999999999999999999999999 79 9999999999999999999999987
No 3
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.80 E-value=10 Score=31.49 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=30.2
Q ss_pred CChhHHHHHHHHHHHHHHHHhhhcccccceeeeeee
Q 041737 68 PPKYDLNAKWDACIDLTVRRFVYSSLGGAFAGLLFF 103 (152)
Q Consensus 68 pSE~~L~eKWDrCLsdtl~K~g~G~l~Gvv~SLLFF 103 (152)
+.|..+-+-||-|.-.+++..+.||++|.+++|++-
T Consensus 30 ~~e~r~le~~n~c~~Ka~~sgV~GfglG~~~GlFla 65 (168)
T KOG3225|consen 30 PTEMRYLEEENSCAVKAVKSGVTGFGLGGAFGLFLA 65 (168)
T ss_pred hHHHHHHHHhcchhHHHHHhhccccchhhhHHhhhh
Confidence 346778888999999999999999999988877653
No 4
>PRK15358 pathogenicity island 2 effector protein SseF; Provisional
Probab=41.39 E-value=34 Score=29.59 Aligned_cols=59 Identities=17% Similarity=0.109 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHH---HHHHHhhhcccccceeeeeeecCCCccceeeeeccccccchhhhhhhh
Q 041737 70 KYDLNAKWDACID---LTVRRFVYSSLGGAFAGLLFFRSPVTRWASVAFGAGLGIGSAYTDCSH 130 (152)
Q Consensus 70 E~~L~eKWDrCLs---dtl~K~g~G~l~Gvv~SLLFFRRr~~rWaPIafGtGFGlG~AYsnCq~ 130 (152)
-+++.+.-|+.+. -+|+..+.|++.|+-..+-++-.- .-.|++..+|+++..|-+|--.
T Consensus 27 peqi~qqrdya~hf~qytiral~AgV~FgvSIaatV~SGG--Ag~PLlilAGv~l~LAVaD~aC 88 (239)
T PRK15358 27 PEQIRQQRDYAIHFMQYTIRALGATVVFGLSVAAAVISGG--AGLPIAILAGAALVIAIGDACC 88 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhheeeeeeeeeecCC--ccchHHHHhhhHHHHHHHHHHH
Confidence 4678888898875 567777777666665555555543 3348999999998887776433
No 5
>PRK10132 hypothetical protein; Provisional
Probab=37.66 E-value=7.9 Score=29.33 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=20.2
Q ss_pred HHHHHH-HHHHHhhhcccccceeeeeeecCC
Q 041737 77 WDACID-LTVRRFVYSSLGGAFAGLLFFRSP 106 (152)
Q Consensus 77 WDrCLs-dtl~K~g~G~l~Gvv~SLLFFRRr 106 (152)
-|.|+. +=....+.+.++|+++++|+.||+
T Consensus 78 ~~~~V~~~Pw~svgiaagvG~llG~Ll~RR~ 108 (108)
T PRK10132 78 ADTFVRERPWCSVGTAAAVGIFIGALLSLRK 108 (108)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHhccC
Confidence 344442 444556677778888888988875
No 6
>KOG3853 consensus Inositol monophosphatase [Signal transduction mechanisms]
Probab=37.54 E-value=13 Score=33.58 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHhhhccc
Q 041737 73 LNAKWDACIDLTVRRFVYSSL 93 (152)
Q Consensus 73 L~eKWDrCLsdtl~K~g~G~l 93 (152)
.=+|||.|--|.|.+..+|..
T Consensus 282 ~IKKWDiCAGdAIL~alGG~M 302 (350)
T KOG3853|consen 282 AIKKWDICAGDAILRALGGAM 302 (350)
T ss_pred hhhhccccchHHHHHHcccce
Confidence 357999999999999887764
No 7
>PF05570 DUF765: Circovirus protein of unknown function (DUF765); InterPro: IPR008484 This family consists of several short (27-30aa) porcine and bovine circovirus ORF6 proteins of unknown function.
Probab=36.27 E-value=19 Score=22.10 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=12.8
Q ss_pred cccCCCCCCCCChhHHHH
Q 041737 58 MVEDNSKQIVPPKYDLNA 75 (152)
Q Consensus 58 m~~~~~~~~ipSE~~L~e 75 (152)
||++.+.++.|| |+|..
T Consensus 1 masstpaspaps-dils~ 17 (29)
T PF05570_consen 1 MASSTPASPAPS-DILSS 17 (29)
T ss_pred CCcCCCCCCCcH-HHHhc
Confidence 788888888887 55544
No 8
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.92 E-value=8.6 Score=30.25 Aligned_cols=62 Identities=26% Similarity=0.356 Sum_probs=28.1
Q ss_pred hhhhcccCCCCCCCCChhHHHHHHHHHHHHHHHHhhhcccccceeeeeeec----CCCccce-eeeeccccccch
Q 041737 54 EINRMVEDNSKQIVPPKYDLNAKWDACIDLTVRRFVYSSLGGAFAGLLFFR----SPVTRWA-SVAFGAGLGIGS 123 (152)
Q Consensus 54 ~~~~m~~~~~~~~ipSE~~L~eKWDrCLsdtl~K~g~G~l~Gvv~SLLFFR----Rr~~rWa-PIafGtGFGlG~ 123 (152)
+|-..++-..+...+++....+-.-.. ++ ++.|.++|++++.|+=| ++ |- .|.+=+|||+|.
T Consensus 23 r~kd~~~~~~~~~a~s~k~~~~a~kls-se----fIsGilVGa~iG~llD~~agTsP---wglIv~lllGf~AG~ 89 (116)
T COG5336 23 RIKDAAEGAEKSSAESIKGYAQAFKLS-SE----FISGILVGAGIGWLLDKFAGTSP---WGLIVFLLLGFGAGV 89 (116)
T ss_pred HhhhhccccccccchhhhhhhhhHHHH-HH----HHHHHHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHHH
Confidence 444444443333444444444443322 23 44566666666665433 43 52 233345555554
No 9
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.47 E-value=12 Score=28.48 Aligned_cols=27 Identities=26% Similarity=0.164 Sum_probs=22.4
Q ss_pred HHHHhhhcccccceeeeeeecCCCccc
Q 041737 84 TVRRFVYSSLGGAFAGLLFFRSPVTRW 110 (152)
Q Consensus 84 tl~K~g~G~l~Gvv~SLLFFRRr~~rW 110 (152)
.+..++.|+++|+++|||=.|++.|..
T Consensus 4 yllslgAGllVGiiyaLl~vrsPAPP~ 30 (93)
T COG4317 4 YLLSLGAGLLVGIIYALLKVRSPAPPA 30 (93)
T ss_pred HHHHHhhhHHHHHHHHHHhCCCCCCcH
Confidence 466789999999999999999985443
No 10
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=27.34 E-value=16 Score=28.02 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=23.9
Q ss_pred HHHHHHHHhhh-cccccceeeeeeecC--CCccceeeeecccc-ccchhhhhhhhhcC
Q 041737 80 CIDLTVRRFVY-SSLGGAFAGLLFFRS--PVTRWASVAFGAGL-GIGSAYTDCSHFFD 133 (152)
Q Consensus 80 CLsdtl~K~g~-G~l~Gvv~SLLFFRR--r~~rWaPIafGtGF-GlG~AYsnCq~~F~ 133 (152)
|+-+.++.+.+ |+++|++- +|+-++ +..-|+ +|+-+ |....|.-|++..+
T Consensus 39 CfR~slL~Gi~~G~~vG~~~-fl~~~~~~~A~nwa---vgsF~l~s~~~we~Cr~~r~ 92 (118)
T PF12597_consen 39 CFRDSLLYGIAGGFGVGGLR-FLFTSNPRKAANWA---VGSFFLGSLGSWEYCRYNRR 92 (118)
T ss_pred cHHHHHHHHHHHHHHHHhhh-hcccCCCccchhhh---hHHHHHHHHHHHHHHHHHHH
Confidence 88776664443 33334433 222222 222342 33333 33346888988654
No 11
>PRK10404 hypothetical protein; Provisional
Probab=26.04 E-value=16 Score=27.31 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=18.3
Q ss_pred HHHHHHH-HHHHHhhhcccccceeeeeeecC
Q 041737 76 KWDACID-LTVRRFVYSSLGGAFAGLLFFRS 105 (152)
Q Consensus 76 KWDrCLs-dtl~K~g~G~l~Gvv~SLLFFRR 105 (152)
.-|.|+. +=..-++.+.++|+++++|+.||
T Consensus 71 ~td~yV~e~Pw~avGiaagvGlllG~Ll~RR 101 (101)
T PRK10404 71 RADDYVHEKPWQGIGVGAAVGLVLGLLLARR 101 (101)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHhcC
Confidence 3345553 44445666667788888877765
No 12
>PF00746 Gram_pos_anchor: Gram positive anchor; InterPro: IPR019948 Viruses, parasites and bacteria are covered in protein and sugar molecules that help them gain entry into a host by counteracting the host's defences. One such molecule is the M protein produced by certain streptococcal bacteria. M proteins embody a motif that is now known to be shared by many Gram-positive bacterial surface proteins. The motif includes a conserved hexapeptide, which precedes a hydrophobic C-terminal membrane anchor, which itself precedes a cluster of basic residues [, ]. This structure is represented in the following schematic representation: +--------------------------------------------+-+--------+-+ | Variable length extracellular domain |H| Anchor |B| +--------------------------------------------+-+--------+-+ 'H': conserved hexapeptide. 'B': cluster of basic residues. It has been proposed that this hexapeptide sequence is responsible for a post- translational modification necessary for the proper anchoring of the proteins which bear it, to the cell wall.; PDB: 2XTL_B 3QDH_A 2Y1V_C 2X9X_A 3RPK_A 2X9W_A 2X9Y_A.
Probab=24.04 E-value=26 Score=21.12 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=0.0
Q ss_pred hhcccccceeeeeeecCC
Q 041737 89 VYSSLGGAFAGLLFFRSP 106 (152)
Q Consensus 89 g~G~l~Gvv~SLLFFRRr 106 (152)
+.|+++-+...++++|||
T Consensus 22 ~~G~l~~~~~~~~~~krr 39 (39)
T PF00746_consen 22 ILGALLLLGGGLLLVKRR 39 (39)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHheecC
Confidence 344433333444555553
Done!