Query 041737
Match_columns 152
No_of_seqs 105 out of 172
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 17:20:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041737.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041737hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ajb_B Peroxisomal biogenesis 30.8 21 0.0007 23.5 1.4 31 56-86 4-36 (49)
2 4h62_V Mediator of RNA polymer 15.2 1.2E+02 0.0041 18.0 2.4 17 69-85 10-26 (31)
3 3ota_A Holo-[acyl-carrier-prot 15.0 31 0.0011 25.3 -0.2 16 115-130 66-81 (129)
4 2llm_A Amyloid beta A4 protein 18.6 37 0.0013 21.7 0.0 12 95-106 32-43 (43)
5 1wlx_A Alpha-actinin 4; three- 13.5 2.1E+02 0.0073 21.3 4.0 38 46-84 65-114 (129)
6 8tfv_A Protein (thanatin); bac 13.2 85 0.0029 17.2 1.3 15 6-20 1-15 (21)
7 1unl_D Cyclin-dependent kinase 11.9 1E+02 0.0034 25.3 1.9 24 65-88 147-170 (208)
8 2los_A Transmembrane protein 1 9.7 97 0.0033 23.0 0.0 29 93-125 31-59 (121)
9 1rmk_A MU-O-conotoxin mrvib; b 6.7 33 0.0011 20.6 -2.2 9 74-82 3-11 (31)
10 3v57_A Phycoerythrin alpha sub 6.6 2.3E+02 0.0078 21.5 1.9 23 74-96 76-101 (164)
No 1
>3ajb_B Peroxisomal biogenesis factor 19; all alpha, protein-protein complex, protein transport; 2.50A {Homo sapiens}
Probab=30.75 E-value=21 Score=23.48 Aligned_cols=31 Identities=13% Similarity=0.153 Sum_probs=13.4
Q ss_pred hhcccCCCCCCCCCh--hHHHHHHHHHHHHHHH
Q 041737 56 NRMVEDNSKQIVPPK--YDLNAKWDACIDLTVR 86 (152)
Q Consensus 56 ~~m~~~~~~~~ipSE--~~L~eKWDrCLsdtl~ 86 (152)
..|++..+...++.| .+|++-.|.||+|+=+
T Consensus 4 ~~Ma~~~e~~~~~~~~d~ELdeLLDSALeDFdK 36 (49)
T 3ajb_B 4 GSMAAAEEGASVGAEADRELEELLESALDDFDK 36 (49)
T ss_dssp ----------------CCHHHHHHHHHHTHHHH
T ss_pred cccchhhccCcccccccHHHHHHHHHHHHhhcc
Confidence 357777777665554 3899999999998754
No 2
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=15.20 E-value=1.2e+02 Score=18.00 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=13.7
Q ss_pred ChhHHHHHHHHHHHHHH
Q 041737 69 PKYDLNAKWDACIDLTV 85 (152)
Q Consensus 69 SE~~L~eKWDrCLsdtl 85 (152)
.|.++.+-.|.|++.++
T Consensus 10 dekqieelldncietfv 26 (31)
T 4h62_V 10 DEKQIEELLDNCIETFV 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 37888899999998654
No 3
>3ota_A Holo-[acyl-carrier-protein] synthase; structural genomics, center for structural genomics of infec diseases, csgid; HET: COA; 1.85A {Vibrio cholerae o1 biovar el tor} PDB: 3qmn_A*
Probab=15.03 E-value=31 Score=25.30 Aligned_cols=16 Identities=25% Similarity=0.654 Sum_probs=13.1
Q ss_pred eccccccchhhhhhhh
Q 041737 115 FGAGLGIGSAYTDCSH 130 (152)
Q Consensus 115 fGtGFGlG~AYsnCq~ 130 (152)
||+|++-|+.|.|.+-
T Consensus 66 lGtg~~~~~~~~dIeI 81 (129)
T 3ota_A 66 LGTGIAQGVTFHDFTI 81 (129)
T ss_dssp HTSCSCTTCCGGGEEE
T ss_pred hcccCCCCCCceEEEE
Confidence 6888888888888764
No 4
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=18.56 E-value=37 Score=21.68 Aligned_cols=12 Identities=8% Similarity=0.160 Sum_probs=9.2
Q ss_pred cceeeeeeecCC
Q 041737 95 GAFAGLLFFRSP 106 (152)
Q Consensus 95 Gvv~SLLFFRRr 106 (152)
-+|.|++++|||
T Consensus 32 vIVvsl~mlRrr 43 (43)
T 2llm_A 32 VIVITLVMLKKK 43 (43)
Confidence 467888888875
No 5
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=13.52 E-value=2.1e+02 Score=21.31 Aligned_cols=38 Identities=29% Similarity=0.455 Sum_probs=25.3
Q ss_pred hhhhhhh----hhhhhcc--------cCCCCCCCCChhHHHHHHHHHHHHH
Q 041737 46 EKEIEGI----CEINRMV--------EDNSKQIVPPKYDLNAKWDACIDLT 84 (152)
Q Consensus 46 ~~~~~~~----~~~~~m~--------~~~~~~~ipSE~~L~eKWDrCLsdt 84 (152)
++|.+-| +|+++.. .+|+-+.+. =+.|.+|||.....+
T Consensus 65 ~~e~~~i~~i~~el~~~~~~~~~~~~~~npYT~it-~~~l~~~W~~l~~li 114 (129)
T 1wlx_A 65 DREREAILAIHKEAQRIAESNHIKLSGSNPYTTVT-PQIINSKWEKVQQLV 114 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCSSSCSSCCCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCCCCCCCCccch-HHHHHHHHHHHHHHH
Confidence 4555556 7777643 555556655 478999999876543
No 6
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=13.19 E-value=85 Score=17.24 Aligned_cols=15 Identities=47% Similarity=0.709 Sum_probs=11.5
Q ss_pred CCCCCeeEEEecccc
Q 041737 6 GSKSPTLIFSVDRRR 20 (152)
Q Consensus 6 ~~~~~~~~~~~~~~~ 20 (152)
|||.|.-|.-..||.
T Consensus 1 gskkpvpiiycnrrt 15 (21)
T 8tfv_A 1 GSKKPVPIIYCNRRT 15 (26)
T ss_dssp CCCCCCCCEEEEGGG
T ss_pred CCCCcccEEEEcCcc
Confidence 788898887777653
No 7
>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D*
Probab=11.91 E-value=1e+02 Score=25.28 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=17.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHh
Q 041737 65 QIVPPKYDLNAKWDACIDLTVRRF 88 (152)
Q Consensus 65 ~~ipSE~~L~eKWDrCLsdtl~K~ 88 (152)
++--.|..-+.=|||||.-.....
T Consensus 147 KPFlve~~ke~FWdRCl~ii~~~S 170 (208)
T 1unl_D 147 KPFLVESCKEAFWDRCLSVINLMS 170 (208)
T ss_dssp GGGCCSSCHHHHHHHHHHHHHHHH
T ss_pred cceeecCCHHHHHHHHHHHHHhhc
Confidence 333448889999999998554433
No 8
>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens}
Probab=9.71 E-value=97 Score=22.99 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=16.4
Q ss_pred cccceeeeeeecCCCccceeeeeccccccchhh
Q 041737 93 LGGAFAGLLFFRSPVTRWASVAFGAGLGIGSAY 125 (152)
Q Consensus 93 l~Gvv~SLLFFRRr~~rWaPIafGtGFGlG~AY 125 (152)
++|.+++++.-++. +.+..|++||+-.+|
T Consensus 31 ~~GGiiGY~k~gS~----~SLiaGl~~G~l~~~ 59 (121)
T 2los_A 31 ASGGIIGYVKAGSV----PSLAAGLLFGSLAGL 59 (121)
Confidence 34777777666664 244456666654333
No 9
>1rmk_A MU-O-conotoxin mrvib; beta sheet, cystine knot; NMR {Conus marmoreus} SCOP: g.3.6.1
Probab=6.68 E-value=33 Score=20.62 Aligned_cols=9 Identities=44% Similarity=1.147 Sum_probs=6.5
Q ss_pred HHHHHHHHH
Q 041737 74 NAKWDACID 82 (152)
Q Consensus 74 ~eKWDrCLs 82 (152)
.+|||.|.-
T Consensus 3 ~rrW~~C~~ 11 (31)
T 1rmk_A 3 SKKWEYCIV 11 (31)
T ss_dssp ECTTSCCCC
T ss_pred ccccccccc
Confidence 368998864
No 10
>3v57_A Phycoerythrin alpha subunit; globin-like, photosynthesis; HET: PEB; 1.70A {Porphyridium purpureum} PDB: 3v58_A* 1eyx_A* 1b8d_A* 1lia_A* 2vjh_A* 3mwn_A*
Probab=6.59 E-value=2.3e+02 Score=21.50 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=18.1
Q ss_pred HHHHHHHHHH---HHHHhhhcccccc
Q 041737 74 NAKWDACIDL---TVRRFVYSSLGGA 96 (152)
Q Consensus 74 ~eKWDrCLsd---tl~K~g~G~l~Gv 96 (152)
.++++.|+-| .|+.+.|++++|-
T Consensus 76 ~~~~~~C~RD~~~~LR~vtYal~aGd 101 (164)
T 3v57_A 76 QEKINKCYRDVDHYMRLVNYCLVVGG 101 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5788899864 6888889998874
Done!