Query 041738
Match_columns 96
No_of_seqs 111 out of 466
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 10:08:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02290 cytokinin trans-hydro 99.5 3.2E-13 6.9E-18 106.7 11.1 93 4-96 9-101 (516)
2 PTZ00404 cytochrome P450; Prov 97.9 2.4E-05 5.2E-10 61.4 5.8 59 18-95 10-68 (482)
3 PLN03234 cytochrome P450 83B1; 97.5 0.00015 3.1E-09 57.3 4.7 41 37-95 28-68 (499)
4 KOG0158 Cytochrome P450 CYP3/C 97.4 0.00034 7.4E-09 57.0 5.8 25 33-57 27-51 (499)
5 KOG0157 Cytochrome P450 CYP4/C 97.4 0.00059 1.3E-08 54.8 6.9 46 35-96 33-78 (497)
6 KOG0156 Cytochrome P450 CYP2 s 97.0 0.0012 2.5E-08 53.6 5.1 40 39-96 28-67 (489)
7 PLN00168 Cytochrome P450; Prov 97.0 0.0013 2.9E-08 52.4 5.1 57 23-95 21-77 (519)
8 PLN02196 abscisic acid 8'-hydr 96.9 0.0018 3.9E-08 50.9 5.2 41 37-95 35-75 (463)
9 PLN02774 brassinosteroid-6-oxi 96.9 0.0018 4E-08 50.8 5.1 44 33-95 26-70 (463)
10 PLN02966 cytochrome P450 83A1 96.8 0.00074 1.6E-08 53.6 2.3 41 38-96 30-70 (502)
11 PLN02971 tryptophan N-hydroxyl 96.6 0.0045 9.8E-08 49.9 5.1 40 39-95 59-99 (543)
12 PLN03112 cytochrome P450 famil 96.5 0.0026 5.7E-08 50.4 3.6 38 39-95 34-71 (514)
13 PLN02394 trans-cinnamate 4-mon 96.3 0.0096 2.1E-07 47.1 5.4 40 38-95 31-70 (503)
14 PLN02183 ferulate 5-hydroxylas 96.1 0.011 2.4E-07 47.1 5.2 41 36-95 35-75 (516)
15 PLN02738 carotene beta-ring hy 96.0 0.0079 1.7E-07 50.0 3.8 67 26-95 104-171 (633)
16 PLN02302 ent-kaurenoic acid ox 96.0 0.024 5.3E-07 44.3 6.3 39 39-91 44-82 (490)
17 PLN03195 fatty acid omega-hydr 95.3 0.056 1.2E-06 43.0 6.1 42 34-95 27-71 (516)
18 PLN02687 flavonoid 3'-monooxyg 95.1 0.026 5.7E-07 45.0 3.8 39 38-95 35-73 (517)
19 PLN00110 flavonoid 3',5'-hydro 94.5 0.1 2.2E-06 41.7 5.7 45 32-95 26-70 (504)
20 PF00067 p450: Cytochrome P450 94.4 0.082 1.8E-06 39.3 4.7 39 40-95 2-40 (463)
21 PLN02500 cytochrome P450 90B1 94.1 0.17 3.7E-06 40.0 6.2 43 39-95 40-82 (490)
22 PLN02655 ent-kaurene oxidase 94.1 0.041 9E-07 43.3 2.6 39 39-95 1-39 (466)
23 COG3898 Uncharacterized membra 94.0 0.11 2.4E-06 42.2 4.9 59 4-62 46-111 (531)
24 PLN02169 fatty acid (omega-1)- 92.0 0.86 1.9E-05 36.5 7.4 23 33-55 27-49 (500)
25 PLN03141 3-epi-6-deoxocathaste 90.0 0.35 7.5E-06 37.9 3.2 42 40-95 10-51 (452)
26 PF07219 HemY_N: HemY protein 86.8 1.8 3.8E-05 28.1 4.6 54 8-61 25-85 (108)
27 PLN02987 Cytochrome P450, fami 84.0 2.5 5.4E-05 33.7 5.0 42 40-95 33-74 (472)
28 PLN03018 homomethionine N-hydr 75.7 5.6 0.00012 32.3 4.6 59 19-95 23-82 (534)
29 PF11743 DUF3301: Protein of u 65.0 26 0.00057 22.5 5.2 12 29-40 28-39 (97)
30 TIGR00540 hemY_coli hemY prote 64.1 16 0.00034 28.5 4.7 27 10-36 52-78 (409)
31 PRK10747 putative protoheme IX 60.5 17 0.00037 28.3 4.3 50 10-59 52-108 (398)
32 PLN02648 allene oxide synthase 55.5 17 0.00036 29.4 3.6 43 37-93 17-60 (480)
33 KOG0159 Cytochrome P450 CYP11/ 52.7 9.2 0.0002 31.9 1.7 41 39-94 52-92 (519)
34 PF05399 EVI2A: Ectropic viral 51.8 52 0.0011 24.7 5.4 46 2-48 129-180 (227)
35 PLN02936 epsilon-ring hydroxyl 50.6 13 0.00029 29.4 2.3 41 40-95 15-56 (489)
36 PF10281 Ish1: Putative stress 50.5 37 0.00081 17.8 3.9 29 26-57 5-33 (38)
37 cd01240 PH_beta-ARK Beta adren 48.6 10 0.00023 25.6 1.2 14 79-92 15-28 (116)
38 PF13625 Helicase_C_3: Helicas 46.8 41 0.00089 22.1 3.9 37 51-94 57-93 (129)
39 PF15330 SIT: SHP2-interacting 45.7 44 0.00095 22.0 3.9 11 44-54 45-55 (107)
40 PF11337 DUF3139: Protein of u 42.8 80 0.0017 19.4 5.4 14 27-40 37-50 (85)
41 PTZ00200 cysteine proteinase; 42.4 24 0.00052 28.7 2.6 17 76-92 121-137 (448)
42 KOG4562 Uncharacterized conser 41.4 48 0.001 26.1 4.1 56 3-58 205-289 (329)
43 PF08733 PalH: PalH/RIM21; In 39.2 55 0.0012 25.6 4.1 16 26-41 317-332 (348)
44 PRK00720 tatA twin arginine tr 38.4 28 0.0006 21.9 1.9 12 2-13 8-19 (78)
45 KOG0684 Cytochrome P450 [Secon 36.3 1.3E+02 0.0028 25.1 5.9 15 80-94 56-70 (486)
46 PRK02958 tatA twin arginine tr 35.8 29 0.00062 21.6 1.7 11 2-12 8-18 (73)
47 COG0011 Uncharacterized conser 34.9 61 0.0013 21.2 3.2 37 29-65 25-64 (100)
48 PF09336 Vps4_C: Vps4 C termin 34.3 25 0.00054 20.8 1.2 11 79-89 52-62 (62)
49 COG4970 FimT Tfp pilus assembl 32.6 82 0.0018 22.8 3.8 30 2-31 14-43 (181)
50 PF15643 Tox-PL-2: Papain fold 32.3 34 0.00074 22.5 1.7 23 27-49 25-47 (100)
51 PRK01614 tatE twin arginine tr 31.9 40 0.00087 21.6 1.9 13 2-14 8-20 (85)
52 PRK04598 tatA twin arginine tr 31.4 42 0.00092 21.2 2.0 11 2-12 8-18 (81)
53 PRK01833 tatA twin arginine tr 31.3 43 0.00094 20.8 2.0 12 2-13 8-19 (74)
54 PF04799 Fzo_mitofusin: fzo-li 31.3 16 0.00035 26.2 0.0 20 21-40 63-82 (171)
55 PRK03554 tatA twin arginine tr 30.8 44 0.00094 21.6 2.0 12 2-13 8-19 (89)
56 PF03115 Astro_capsid: Astrovi 30.8 16 0.00036 31.9 0.0 18 30-47 65-82 (787)
57 PF10717 ODV-E18: Occlusion-de 30.5 48 0.001 21.2 2.1 11 3-13 30-40 (85)
58 PRK03625 tatE twin arginine tr 29.7 42 0.00091 20.4 1.7 11 2-12 8-18 (67)
59 PF13956 Ibs_toxin: Toxin Ibs, 29.7 33 0.00071 15.9 0.9 9 1-9 2-10 (19)
60 COG1826 TatA Sec-independent p 29.6 44 0.00094 21.2 1.8 12 2-13 8-19 (94)
61 PRK00442 tatA twin arginine tr 28.7 48 0.001 21.5 1.9 12 2-13 8-19 (92)
62 PRK04561 tatA twin arginine tr 28.5 50 0.0011 20.7 1.9 11 2-12 8-18 (75)
63 PHA03240 envelope glycoprotein 28.3 87 0.0019 23.7 3.4 14 26-39 233-246 (258)
64 PF13276 HTH_21: HTH-like doma 27.5 58 0.0012 18.4 2.0 20 25-44 38-57 (60)
65 PF06884 DUF1264: Protein of u 27.4 46 0.001 23.9 1.8 16 80-95 102-117 (171)
66 PF14316 DUF4381: Domain of un 26.3 1.7E+02 0.0036 19.7 4.4 14 5-18 27-40 (146)
67 PF01454 MAGE: MAGE family; I 26.2 1.1E+02 0.0024 21.3 3.6 29 27-55 123-152 (195)
68 TIGR02920 acc_sec_Y2 accessory 26.1 1.5E+02 0.0032 23.6 4.7 27 19-45 291-317 (395)
69 PF11407 RestrictionMunI: Type 25.9 36 0.00079 24.9 1.1 17 79-95 164-180 (202)
70 PF04689 S1FA: DNA binding pro 25.9 1.7E+02 0.0036 18.0 4.2 22 3-24 16-38 (69)
71 PF00558 Vpu: Vpu protein; In 25.7 1.1E+02 0.0023 19.4 3.1 7 14-20 20-26 (81)
72 TIGR02876 spore_yqfD sporulati 25.1 2.5E+02 0.0054 22.2 5.7 30 25-56 116-146 (382)
73 COG4968 PilE Tfp pilus assembl 25.0 1.9E+02 0.0041 20.1 4.5 16 2-17 12-27 (139)
74 KOG0109 RNA-binding protein LA 24.3 31 0.00066 27.2 0.5 11 44-54 3-13 (346)
75 TIGR00106 uncharacterized prot 24.1 1.6E+02 0.0034 18.8 3.7 32 30-61 24-58 (97)
76 COG3257 GlxB Uncharacterized p 23.4 40 0.00086 25.6 0.9 36 37-79 139-175 (264)
77 PRK12417 secY preprotein trans 23.3 2.2E+02 0.0047 22.8 5.1 23 18-40 297-319 (404)
78 PF06842 DUF1242: Protein of u 23.1 56 0.0012 17.6 1.2 15 27-42 20-34 (36)
79 PF11137 DUF2909: Protein of u 23.1 89 0.0019 18.8 2.2 24 1-24 1-24 (63)
80 TIGR03746 conj_TIGR03746 integ 22.8 1.1E+02 0.0024 22.6 3.1 31 2-32 11-42 (202)
81 smart00540 LEM in nuclear memb 22.5 72 0.0016 17.8 1.6 13 28-40 9-21 (44)
82 KOG3115 Methyltransferase-like 22.2 57 0.0012 24.7 1.5 33 58-92 23-55 (249)
83 PF10883 DUF2681: Protein of u 22.1 2.2E+02 0.0048 18.1 4.8 12 22-33 20-31 (87)
84 smart00843 Ftsk_gamma This dom 21.8 1.6E+02 0.0035 17.6 3.2 28 16-43 25-52 (63)
85 COG3316 Transposase and inacti 21.5 60 0.0013 24.1 1.5 13 80-92 46-58 (215)
86 PF13072 DUF3936: Protein of u 21.2 93 0.002 17.0 1.9 18 41-58 6-23 (38)
87 CHL00038 psbL photosystem II p 20.6 95 0.0021 16.9 1.8 11 3-13 23-33 (38)
88 PRK09204 secY preprotein trans 20.3 2.7E+02 0.0058 22.4 5.1 18 25-42 330-347 (426)
No 1
>PLN02290 cytokinin trans-hydroxylase
Probab=99.49 E-value=3.2e-13 Score=106.68 Aligned_cols=93 Identities=35% Similarity=0.697 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCCCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHH
Q 041738 4 LIVTVIFVLIISLLKAIHSSIWIPHRIQRHFQRQGISGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHR 83 (96)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~w~~P~rl~~~l~~QGI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~ 83 (96)
|+|+++.++.-.+|+.+.++++.|+|++++++++|++||+|.+++||+.++.+...++..++++...+|+.....+++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (516)
T PLN02290 9 LLVIFLTLLLRVAYDTISCYFLTPRRIKKIMERQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVA 88 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHH
Confidence 44444455556677778889999999999999999999999999999999977655555555555567777778889999
Q ss_pred HHhhhCCcceecC
Q 041738 84 WSRVYGKTFLYWF 96 (96)
Q Consensus 84 w~k~YGk~fl~W~ 96 (96)
|.++||++|.+|.
T Consensus 89 ~~~~yG~i~~~~~ 101 (516)
T PLN02290 89 WSKQYGKRFIYWN 101 (516)
T ss_pred HHHHhCCeEEEcc
Confidence 9999999998873
No 2
>PTZ00404 cytochrome P450; Provisional
Probab=97.91 E-value=2.4e-05 Score=61.43 Aligned_cols=59 Identities=22% Similarity=0.314 Sum_probs=44.6
Q ss_pred HHHHHHHHhhhhhHHHHhhcCCCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceec
Q 041738 18 KAIHSSIWIPHRIQRHFQRQGISGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYW 95 (96)
Q Consensus 18 ~~~~~~w~~P~rl~~~l~~QGI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W 95 (96)
.++++..+.+.+..+++++++|+||++.+++||+.++.+ . -| -++++|.++||++|-+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~pgp~~~p~~G~~~~~~~-------~-----~~-------~~~~~~~~~yG~i~~~~ 68 (482)
T PTZ00404 10 LFIFYIIHNAYKKYKKIHKNELKGPIPIPILGNLHQLGN-------L-----PH-------RDLTKMSKKYGGIFRIW 68 (482)
T ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCCCeeccHhhhcc-------c-----HH-------HHHHHHHHHhCCeeEEE
Confidence 444555566666666899999999999999999877632 0 01 37799999999998776
No 3
>PLN03234 cytochrome P450 83B1; Provisional
Probab=97.51 E-value=0.00015 Score=57.28 Aligned_cols=41 Identities=27% Similarity=0.424 Sum_probs=30.7
Q ss_pred cCCCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceec
Q 041738 37 QGISGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYW 95 (96)
Q Consensus 37 QGI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W 95 (96)
+.++||++.+++||+.++.+. . ...++.+|.++||++|-+|
T Consensus 28 ~~pPgp~~~P~iG~~~~~~~~------~------------~~~~~~~~~~~yG~~~~~~ 68 (499)
T PLN03234 28 RLPPGPKGLPIIGNLHQMEKF------N------------PQHFLFRLSKLYGPIFTMK 68 (499)
T ss_pred CCCcCCCCCCeeccHHhcCCC------C------------ccHHHHHHHHHcCCeEEEE
Confidence 358899999999998776210 0 1147899999999999776
No 4
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.42 E-value=0.00034 Score=57.05 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.8
Q ss_pred HHhhcCCCCCCCccccCCHHHHHHH
Q 041738 33 HFQRQGISGPGYRLITGNSTEISRM 57 (96)
Q Consensus 33 ~l~~QGI~GP~~~~l~Gn~~e~~~~ 57 (96)
++++.||+||+|.+++||+.++.+.
T Consensus 27 yw~rrGi~~~~p~p~~Gn~~~~~~~ 51 (499)
T KOG0158|consen 27 YWRRRGIPGPKPLPFLGNLPGMLKR 51 (499)
T ss_pred hhccCCCCCCCCCCcEecHHHHHhc
Confidence 8888899999999999999999774
No 5
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=97.39 E-value=0.00059 Score=54.75 Aligned_cols=46 Identities=22% Similarity=0.332 Sum_probs=38.0
Q ss_pred hhcCCCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceecC
Q 041738 35 QRQGISGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYWF 96 (96)
Q Consensus 35 ~~QGI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W~ 96 (96)
+.++++||++.+++||..|+.+.. .....+..++..+||++|..|.
T Consensus 33 ~~~~~~gp~~~P~iG~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 78 (497)
T KOG0157|consen 33 KKKLPPGPPGWPLIGNLLEFLKPL----------------EEILDFVTELLSRYGPIFKTWL 78 (497)
T ss_pred HhccCCCCCCCCcccchHHhhcch----------------hHHHHHHHHHHHHcCchhhhhh
Confidence 788999999999999999986632 2334688999999999998873
No 6
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.04 E-value=0.0012 Score=53.62 Aligned_cols=40 Identities=25% Similarity=0.437 Sum_probs=31.8
Q ss_pred CCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceecC
Q 041738 39 ISGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYWF 96 (96)
Q Consensus 39 I~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W~ 96 (96)
.+||++-+++||+.++... .-| -.+++|+++||++|..|.
T Consensus 28 PPGP~~lPiIGnl~~l~~~-----------~~h-------~~~~~ls~~yGpi~tl~l 67 (489)
T KOG0156|consen 28 PPGPPPLPIIGNLHQLGSL-----------PPH-------RSFRKLSKKYGPVFTLRL 67 (489)
T ss_pred CcCCCCCCccccHHHcCCC-----------chh-------HHHHHHHHHhCCeEEEEe
Confidence 5799999999999887441 013 388999999999998873
No 7
>PLN00168 Cytochrome P450; Provisional
Probab=96.99 E-value=0.0013 Score=52.38 Aligned_cols=57 Identities=14% Similarity=0.081 Sum_probs=40.1
Q ss_pred HHHhhhhhHHHHhhcCCCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceec
Q 041738 23 SIWIPHRIQRHFQRQGISGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYW 95 (96)
Q Consensus 23 ~w~~P~rl~~~l~~QGI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W 95 (96)
+|+.|.+..-..+.+=.+||++.+++||+.++... . +....++.+|.++||++|-+|
T Consensus 21 ~~~~~~~~~~~~~~~lpPgp~~~pl~G~l~~~~~~------~----------~~~~~~~~~~~~~yG~i~~~~ 77 (519)
T PLN00168 21 LLGKHGGRGGKKGRRLPPGPPAVPLLGSLVWLTNS------S----------ADVEPLLRRLIARYGPVVSLR 77 (519)
T ss_pred hhhhhhccCCCCCCCCCcCCCCCcccccHHhhccc------c----------ccHHHHHHHHHHHhCCeEEEE
Confidence 35567776656666667899999999998655210 0 112357899999999998876
No 8
>PLN02196 abscisic acid 8'-hydroxylase
Probab=96.92 E-value=0.0018 Score=50.95 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=29.3
Q ss_pred cCCCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceec
Q 041738 37 QGISGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYW 95 (96)
Q Consensus 37 QGI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W 95 (96)
.+.+||++.+++||..++.+. . |. .++.+|.++||++|..|
T Consensus 35 ~~Ppgp~~~P~iG~~~~~~~~------~----------~~--~~~~~~~~~yG~i~~~~ 75 (463)
T PLN02196 35 PLPPGTMGWPYVGETFQLYSQ------D----------PN--VFFASKQKRYGSVFKTH 75 (463)
T ss_pred CCCCCCCCCCccchHHHHHhc------C----------HH--HHHHHHHHHhhhhheee
Confidence 466666677889998775320 1 11 36899999999998876
No 9
>PLN02774 brassinosteroid-6-oxidase
Probab=96.90 E-value=0.0018 Score=50.83 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=32.2
Q ss_pred HHhhcCC-CCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceec
Q 041738 33 HFQRQGI-SGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYW 95 (96)
Q Consensus 33 ~l~~QGI-~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W 95 (96)
..++.|. +||++.+++||..++.+ .+ + -++++|.++||++|-+|
T Consensus 26 ~~~r~~~ppgp~~~P~~G~~~~~~~-------~~-----~-------~~~~~~~~~yG~i~~~~ 70 (463)
T PLN02774 26 RYSKKGLPPGTMGWPLFGETTEFLK-------QG-----P-------DFMKNQRLRYGSFFKSH 70 (463)
T ss_pred ccCCCCCCCCCCCCCchhhHHHHHH-------hh-----H-------HHHHHHHHHhccCccce
Confidence 3455677 58888899999877643 10 1 27789999999998876
No 10
>PLN02966 cytochrome P450 83A1
Probab=96.82 E-value=0.00074 Score=53.56 Aligned_cols=41 Identities=22% Similarity=0.502 Sum_probs=30.6
Q ss_pred CCCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceecC
Q 041738 38 GISGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYWF 96 (96)
Q Consensus 38 GI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W~ 96 (96)
=++||++.+++||+.++.. .....++.+|.++||++|.+|.
T Consensus 30 ~ppgp~~~p~~G~l~~l~~------------------~~~~~~~~~~~~~yG~v~~~~~ 70 (502)
T PLN02966 30 LPPGPSPLPVIGNLLQLQK------------------LNPQRFFAGWAKKYGPILSYRI 70 (502)
T ss_pred CCcCCCCCCeeccHHhcCC------------------CChhHHHHHHHHHhCCeEEEec
Confidence 4789999999999866521 0112478999999999997763
No 11
>PLN02971 tryptophan N-hydroxylase
Probab=96.56 E-value=0.0045 Score=49.85 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=29.2
Q ss_pred CCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhC-Ccceec
Q 041738 39 ISGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYG-KTFLYW 95 (96)
Q Consensus 39 I~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YG-k~fl~W 95 (96)
.+||++.+++||+.++.+ . + + ...++++|.++|| ++|.+|
T Consensus 59 PPGP~~lPiiGnl~~l~~-------~------~---~-~~~~l~~~~~~yg~~i~~~~ 99 (543)
T PLN02971 59 PPGPTGFPIVGMIPAMLK-------N------R---P-VFRWLHSLMKELNTEIACVR 99 (543)
T ss_pred CcCCCCCCcccchHHhcc-------C------C---c-HhHHHHHHHHHhCCceEEEE
Confidence 679999999999877632 0 0 1 1247899999999 788776
No 12
>PLN03112 cytochrome P450 family protein; Provisional
Probab=96.53 E-value=0.0026 Score=50.43 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=28.4
Q ss_pred CCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceec
Q 041738 39 ISGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYW 95 (96)
Q Consensus 39 I~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W 95 (96)
++||++.+++||+.++.+ . + .-++.+|.++||++|-+|
T Consensus 34 ppgp~~~pl~G~~~~~~~-------~----------~--~~~~~~~~~kyG~v~~~~ 71 (514)
T PLN03112 34 PPGPPRWPIVGNLLQLGP-------L----------P--HRDLASLCKKYGPLVYLR 71 (514)
T ss_pred ccCCCCCCeeeeHHhcCC-------c----------h--HHHHHHHHHHhCCeEEEE
Confidence 689999999999866521 0 1 136789999999998665
No 13
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=96.29 E-value=0.0096 Score=47.06 Aligned_cols=40 Identities=25% Similarity=0.371 Sum_probs=30.0
Q ss_pred CCCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceec
Q 041738 38 GISGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYW 95 (96)
Q Consensus 38 GI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W 95 (96)
-++||++..++||+.++.+ +..| ..+++|.++||++|..|
T Consensus 31 ~pPgp~~~p~~g~l~~~~~-----------~~~~-------~~~~~~~~~yG~v~~i~ 70 (503)
T PLN02394 31 LPPGPAAVPIFGNWLQVGD-----------DLNH-------RNLAEMAKKYGDVFLLR 70 (503)
T ss_pred CCcCCCCCCeeeeHHhcCC-----------Cchh-------HHHHHHHHHhCCeEEEE
Confidence 3679999999999866521 0011 47889999999998876
No 14
>PLN02183 ferulate 5-hydroxylase
Probab=96.15 E-value=0.011 Score=47.11 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=31.4
Q ss_pred hcCCCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceec
Q 041738 36 RQGISGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYW 95 (96)
Q Consensus 36 ~QGI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W 95 (96)
.+-++||++.+++||+.++.+ . .| +++.+|.++||++|-+|
T Consensus 35 ~~~ppgp~~~Pl~G~l~~~~~-------~-----~~-------~~~~~~~~~yG~i~~~~ 75 (516)
T PLN02183 35 LPYPPGPKGLPIIGNMLMMDQ-------L-----TH-------RGLANLAKQYGGLFHMR 75 (516)
T ss_pred CCCCcCCCCCCeeccHHhcCC-------c-----ch-------HHHHHHHHHhCCeeEEE
Confidence 356899999999999866521 0 11 47899999999999876
No 15
>PLN02738 carotene beta-ring hydroxylase
Probab=96.00 E-value=0.0079 Score=49.98 Aligned_cols=67 Identities=9% Similarity=-0.029 Sum_probs=36.6
Q ss_pred hhhhhHHHHhhcCCCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccc-cccchHHHHHHhhhCCcceec
Q 041738 26 IPHRIQRHFQRQGISGPGYRLITGNSTEISRMHIEALSKPISPVDHDIL-HRTAPFYHRWSRVYGKTFLYW 95 (96)
Q Consensus 26 ~P~rl~~~l~~QGI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~-p~v~P~~~~w~k~YGk~fl~W 95 (96)
.|..++..|+++|++||+-..+.+.-.-..+..... ... +.-+.|. ...+-.+++|.++||++|-+|
T Consensus 104 ~~~~~~~~~~~~~~pgp~laa~t~~ye~y~~~~~~~--~~~-G~l~~i~~g~~~~~l~~lh~kYGpI~ri~ 171 (633)
T PLN02738 104 FPATLRNGLAKLGPPGELLAFLFTWVEAGEGYPKIP--EAK-GSISAVRGEAFFIPLYELFLTYGGIFRLT 171 (633)
T ss_pred chHHHHhhhhhCCCCCchHHHHHcccccccccccCc--ccc-CcHHHhcCchHHHHHHHHHHHhCCEEEEE
Confidence 488899999999999997554433211110000000 000 0000111 112357889999999998765
No 16
>PLN02302 ent-kaurenoic acid oxidase
Probab=95.98 E-value=0.024 Score=44.32 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=26.5
Q ss_pred CCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCc
Q 041738 39 ISGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKT 91 (96)
Q Consensus 39 I~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~ 91 (96)
.+||++.+++||+.++..... . ...| .++.++.++||++
T Consensus 44 pPgp~~~PilG~l~~~~~~~~----~---~~~~-------~~~~~~~~kyG~~ 82 (490)
T PLN02302 44 PPGDLGWPVIGNMWSFLRAFK----S---SNPD-------SFIASFISRYGRT 82 (490)
T ss_pred cCCCCCCCccccHHHHHHhcc----c---CCcH-------HHHHHHHHHhCCC
Confidence 478888899999988754210 0 0011 4789999999973
No 17
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=95.30 E-value=0.056 Score=42.99 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=29.1
Q ss_pred HhhcCCCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhh---CCcceec
Q 041738 34 FQRQGISGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVY---GKTFLYW 95 (96)
Q Consensus 34 l~~QGI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~Y---Gk~fl~W 95 (96)
+++++++||++.+++||..++.+ .| ..+++|.++| |++|.+|
T Consensus 27 ~~~~~~pgp~~~p~~G~~~~~~~-------------~~-------~~~~~~~~~~~~~~~~~~~~ 71 (516)
T PLN03195 27 WSQRNRKGPKSWPIIGAALEQLK-------------NY-------DRMHDWLVEYLSKDRTVVVK 71 (516)
T ss_pred hhccccCCCCCCCeecchHHHHh-------------cc-------chHHHHHHHHhccCCcEEEe
Confidence 34457899999999999765422 01 2457888888 7777765
No 18
>PLN02687 flavonoid 3'-monooxygenase
Probab=95.15 E-value=0.026 Score=45.03 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=29.5
Q ss_pred CCCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceec
Q 041738 38 GISGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYW 95 (96)
Q Consensus 38 GI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W 95 (96)
..+||++-+++||+.++.+ . ...++.+|.++||++|-+|
T Consensus 35 ~pPgp~~~P~iG~~~~~~~-------~------------~~~~~~~~~~~yG~i~~~~ 73 (517)
T PLN02687 35 LPPGPRGWPVLGNLPQLGP-------K------------PHHTMAALAKTYGPLFRLR 73 (517)
T ss_pred CCccCCCCCccccHHhcCC-------c------------hhHHHHHHHHHhCCeeEEe
Confidence 4678888899999866621 1 1247899999999998876
No 19
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=94.50 E-value=0.1 Score=41.68 Aligned_cols=45 Identities=13% Similarity=0.126 Sum_probs=31.9
Q ss_pred HHHhhcCCCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceec
Q 041738 32 RHFQRQGISGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYW 95 (96)
Q Consensus 32 ~~l~~QGI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W 95 (96)
..-.++-.+||++.+++||+..+.+ . + .-++.+|.++||++|.+|
T Consensus 26 ~~~~~~~pPgp~~~Pl~G~l~~~~~-------~----------~--~~~~~~~~~~yG~i~~~~ 70 (504)
T PLN00110 26 PKPSRKLPPGPRGWPLLGALPLLGN-------M----------P--HVALAKMAKRYGPVMFLK 70 (504)
T ss_pred hcccCCCcccCCCCCeeechhhcCC-------c----------h--HHHHHHHHHHhCCeEEEE
Confidence 3334455779999999999755421 0 1 137899999999999877
No 20
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=94.44 E-value=0.082 Score=39.31 Aligned_cols=39 Identities=28% Similarity=0.542 Sum_probs=30.6
Q ss_pred CCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceec
Q 041738 40 SGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYW 95 (96)
Q Consensus 40 ~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W 95 (96)
+||++-+++||..++.+. ....-++++|.++||++|-+|
T Consensus 2 pgp~~~p~~G~~~~~~~~-----------------~~~~~~~~~~~~kyG~i~~~~ 40 (463)
T PF00067_consen 2 PGPPPLPILGNLLQFRRK-----------------GNPHEFFRELHKKYGPIFRIW 40 (463)
T ss_dssp SCSSSBTTTBTHHHHHTT-----------------HHHHHHHHHHHHHHTSEEEEE
T ss_pred cCCCCcCceeEHHHhcCC-----------------CcHHHHHHHHHHHhCCEEEEe
Confidence 689999999999998740 011237899999999999876
No 21
>PLN02500 cytochrome P450 90B1
Probab=94.14 E-value=0.17 Score=39.96 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=28.5
Q ss_pred CCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceec
Q 041738 39 ISGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYW 95 (96)
Q Consensus 39 I~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W 95 (96)
.+||++.+++||..++.+.. .|+ ...-++.+|.++||++|-+|
T Consensus 40 PPgp~~~PiiGn~~~~~~~~-----------~~~---~~~~~~~~~~~~yG~v~~~~ 82 (490)
T PLN02500 40 PPGNMGWPFLGETIGYLKPY-----------SAT---SIGEFMEQHISRYGKIYRSN 82 (490)
T ss_pred CCCCcCCCchhhHHHHHhhc-----------ccC---ChHHHHHHHHHHhccccccc
Confidence 45999999999986543200 010 11136788999999998765
No 22
>PLN02655 ent-kaurene oxidase
Probab=94.09 E-value=0.041 Score=43.26 Aligned_cols=39 Identities=18% Similarity=0.403 Sum_probs=29.4
Q ss_pred CCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceec
Q 041738 39 ISGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYW 95 (96)
Q Consensus 39 I~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W 95 (96)
.+||++.+++||+.++.+ +. + ..++.+|.++||++|-+|
T Consensus 1 ppgp~~lP~iG~l~~~~~------~~----------~--~~~~~~~~~~yG~i~~~~ 39 (466)
T PLN02655 1 VPAVPGLPVIGNLLQLKE------KK----------P--HRTFTKWSEIYGPIYTIR 39 (466)
T ss_pred CcCCCCCCccccHHHcCC------Cc----------h--hHHHHHHHHHhCCeEEEE
Confidence 369999999999977732 01 1 148899999999998765
No 23
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.00 E-value=0.11 Score=42.23 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh----hcCCCCCCCccc---cCCHHHHHHHHHHhc
Q 041738 4 LIVTVIFVLIISLLKAIHSSIWIPHRIQRHFQ----RQGISGPGYRLI---TGNSTEISRMHIEAL 62 (96)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~w~~P~rl~~~l~----~QGI~GP~~~~l---~Gn~~e~~~~~~~a~ 62 (96)
+|.+++++.+.++|..+.++|-.|++++++++ +||+..-+--++ -||-.+-++|.+++.
T Consensus 46 ~~iva~vaav~llwwlv~~iw~sP~t~~Ryfr~rKRdrgyqALStGliAagAGda~lARkmt~~~~ 111 (531)
T COG3898 46 SIIVALVAAVLLLWWLVRSIWESPYTARRYFRERKRDRGYQALSTGLIAAGAGDASLARKMTARAS 111 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhhhhhhhccCchHHHHHHHHHHH
Confidence 45566677777889999999999999998875 578876555565 388888888776553
No 24
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=92.05 E-value=0.86 Score=36.46 Aligned_cols=23 Identities=13% Similarity=-0.025 Sum_probs=19.9
Q ss_pred HHhhcCCCCCCCccccCCHHHHH
Q 041738 33 HFQRQGISGPGYRLITGNSTEIS 55 (96)
Q Consensus 33 ~l~~QGI~GP~~~~l~Gn~~e~~ 55 (96)
.+++.|++||++.+++||+.++.
T Consensus 27 ~~~~~~~p~p~~~pl~G~~~~~~ 49 (500)
T PLN02169 27 HKKPHGQPILKNWPFLGMLPGML 49 (500)
T ss_pred HhccCCCCCCCCCCcccchHHHH
Confidence 56777999999999999997764
No 25
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=89.97 E-value=0.35 Score=37.85 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=29.1
Q ss_pred CCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceec
Q 041738 40 SGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYW 95 (96)
Q Consensus 40 ~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W 95 (96)
+||.+-+++||+.++..- .+ .+| | ..++++|.++||++|-+|
T Consensus 10 pg~~~~P~iG~~~~l~~~-------~~---~~~--~--~~~~~~~~~~yG~i~~~~ 51 (452)
T PLN03141 10 KGSLGWPVIGETLDFISC-------AY---SSR--P--ESFMDKRRSLYGKVFKSH 51 (452)
T ss_pred CCCCCCCchhhHHHHHhh-------cc---cCC--h--HHHHHHHHHHhhheeeec
Confidence 588888999998776431 00 111 1 137889999999999876
No 26
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=86.82 E-value=1.8 Score=28.10 Aligned_cols=54 Identities=20% Similarity=0.368 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCCCCC-------CCccccCCHHHHHHHHHHh
Q 041738 8 VIFVLIISLLKAIHSSIWIPHRIQRHFQRQGISGP-------GYRLITGNSTEISRMHIEA 61 (96)
Q Consensus 8 ~~~~~~~~~~~~~~~~w~~P~rl~~~l~~QGI~GP-------~~~~l~Gn~~e~~~~~~~a 61 (96)
+.+++++.+++++..+|-.|.++++.++++.-+-- --.+.-||..+-.+....+
T Consensus 25 ~~~~~l~ll~~ll~~~~~~p~~~~~~~~~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a 85 (108)
T PF07219_consen 25 LLFVVLYLLLRLLRRLLSLPSRVRRWRRRRRRRKAQRALSRGLIALAEGDWQRAEKLLAKA 85 (108)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33555567778888888778887554433321100 0124568888876665444
No 27
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=84.04 E-value=2.5 Score=33.69 Aligned_cols=42 Identities=19% Similarity=0.329 Sum_probs=27.8
Q ss_pred CCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceec
Q 041738 40 SGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYW 95 (96)
Q Consensus 40 ~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W 95 (96)
+||.+.+++||..++.+-. ..+.+ ..++.+|.++||++|-.|
T Consensus 33 pgp~~~P~iG~~~~~~~~~--~~~~~------------~~~~~~~~~~yG~v~~~~ 74 (472)
T PLN02987 33 PGSLGLPLVGETLQLISAY--KTENP------------EPFIDERVARYGSLFMTH 74 (472)
T ss_pred CCCcCCCchhhHHHHHhhc--ccCCh------------HHHHHHHHHHhchhhhhh
Confidence 5788889999997764210 00111 136789999999988665
No 28
>PLN03018 homomethionine N-hydroxylase
Probab=75.71 E-value=5.6 Score=32.27 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=34.0
Q ss_pred HHHHHHHhhhhhHHHHhhcCCCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhh-CCcceec
Q 041738 19 AIHSSIWIPHRIQRHFQRQGISGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVY-GKTFLYW 95 (96)
Q Consensus 19 ~~~~~w~~P~rl~~~l~~QGI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~Y-Gk~fl~W 95 (96)
++....-||..-.+. ..+=++||++.+++||+.++..- + |. ..+++++.++| |++|.+|
T Consensus 23 ~~~~~~~~~~~~~~~-~~~~PPgp~~~P~iGnl~~l~~~------~----------~~-~~~~~~~~~~~~g~i~~~~ 82 (534)
T PLN03018 23 LLGRILSRPSKTKDR-SRQLPPGPPGWPILGNLPELIMT------R----------PR-SKYFHLAMKELKTDIACFN 82 (534)
T ss_pred HHHHHHhhhcccCCC-CCCCCcCCCCCCeeccHHHhccC------C----------Cc-chhHHHHHHHhCCCeEEEE
Confidence 344555555332211 11226799999999999776320 1 11 13567777776 7888776
No 29
>PF11743 DUF3301: Protein of unknown function (DUF3301); InterPro: IPR021732 This family is conserved in Proteobacteria, but the function is not known.
Probab=64.99 E-value=26 Score=22.46 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=8.5
Q ss_pred hhHHHHhhcCCC
Q 041738 29 RIQRHFQRQGIS 40 (96)
Q Consensus 29 rl~~~l~~QGI~ 40 (96)
..++.++++|+.
T Consensus 28 ~a~~~C~~~~lQ 39 (97)
T PF11743_consen 28 AARRACKRQDLQ 39 (97)
T ss_pred HHHHHHHHcCCc
Confidence 335678888875
No 30
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=64.05 E-value=16 Score=28.47 Aligned_cols=27 Identities=7% Similarity=0.152 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHhh
Q 041738 10 FVLIISLLKAIHSSIWIPHRIQRHFQR 36 (96)
Q Consensus 10 ~~~~~~~~~~~~~~w~~P~rl~~~l~~ 36 (96)
+++++++|+++..+|-.|.++++.+.+
T Consensus 52 ~~~~~~~~~l~~~~~~~p~~~~~~~~~ 78 (409)
T TIGR00540 52 LAIIFAFEWGLRRFFRLGAHSRGWFSG 78 (409)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 334446677777777678776554443
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=60.51 E-value=17 Score=28.28 Aligned_cols=50 Identities=10% Similarity=0.185 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHhhcCC-CCC------CCccccCCHHHHHHHHH
Q 041738 10 FVLIISLLKAIHSSIWIPHRIQRHFQRQGI-SGP------GYRLITGNSTEISRMHI 59 (96)
Q Consensus 10 ~~~~~~~~~~~~~~w~~P~rl~~~l~~QGI-~GP------~~~~l~Gn~~e~~~~~~ 59 (96)
+++++++++++..+|-.|.++++.+++..- +|- --.+.-||..+..+...
T Consensus 52 ~~~~~~~~~~~~~~~~~p~~~~~~~~~rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~ 108 (398)
T PRK10747 52 MVVLFAIEWLLRRIFRTGARTRGWFVGRKRRRARKQTEQALLKLAEGDYQQVEKLMT 108 (398)
T ss_pred HHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 333445677777777667766554433221 110 01133488877665543
No 32
>PLN02648 allene oxide synthase
Probab=55.47 E-value=17 Score=29.39 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=27.9
Q ss_pred cCCCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCC-cce
Q 041738 37 QGISGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGK-TFL 93 (96)
Q Consensus 37 QGI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk-~fl 93 (96)
+..+|+.+-+++|...++.+-.. ... ...|+.+-.++||+ +|-
T Consensus 17 ~~PPg~~g~P~iG~~~~~~~~~~--~~~------------~~~F~~~~~~kyG~~vfk 60 (480)
T PLN02648 17 REIPGSYGLPFLGAIKDRLDYFY--FQG------------EDEFFRSRVEKYKSTVFR 60 (480)
T ss_pred CCCCCCCCCcCcchhhhhhhHHH--hcC------------hHHHHHHHHHHhCCceEE
Confidence 45667777789998877644110 001 12588999999998 764
No 33
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.68 E-value=9.2 Score=31.88 Aligned_cols=41 Identities=20% Similarity=0.083 Sum_probs=27.8
Q ss_pred CCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCccee
Q 041738 39 ISGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLY 94 (96)
Q Consensus 39 I~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~ 94 (96)
|+||++-.++|+.....+-.+ .--|+ +.++..++||++|..
T Consensus 52 IP~p~~~~~l~~l~~~~~~~~--------~~lh~-------~~~~~~~~YG~I~~~ 92 (519)
T KOG0159|consen 52 IPGPKGLPFLGLLWIWRAGGA--------TKLHQ-------HIVQLHQKYGPIFRE 92 (519)
T ss_pred cCCCCCccHHHHHHHHHhhhh--------hHHHH-------HHHHHHHHcCceeee
Confidence 788988888888765332110 11243 678889999999864
No 34
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=51.75 E-value=52 Score=24.66 Aligned_cols=46 Identities=13% Similarity=0.322 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHH--HHHHHHhhhhh-HHHHhhc-CCCCCC--Ccccc
Q 041738 2 HLLIVTVIFVLIISLLKA--IHSSIWIPHRI-QRHFQRQ-GISGPG--YRLIT 48 (96)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--~~~~w~~P~rl-~~~l~~Q-GI~GP~--~~~l~ 48 (96)
-.||.+++|+++++++-+ +..+.+. .++ .-+=.+| |-|-|+ +.||.
T Consensus 129 amLIClIIIAVLfLICT~LfLSTVVLA-NKVS~LKrskQ~gKRqpRSNGDFLA 180 (227)
T PF05399_consen 129 AMLICLIIIAVLFLICTLLFLSTVVLA-NKVSSLKRSKQVGKRQPRSNGDFLA 180 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccCCCcccceee
Confidence 456666666666555553 3333332 222 1122245 888774 45664
No 35
>PLN02936 epsilon-ring hydroxylase
Probab=50.62 E-value=13 Score=29.43 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=28.2
Q ss_pred CCCCCccccCCHHHH-HHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceec
Q 041738 40 SGPGYRLITGNSTEI-SRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYW 95 (96)
Q Consensus 40 ~GP~~~~l~Gn~~e~-~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W 95 (96)
.|-.+-+++|+..|. ..++. .+....+.+|.++||++|-+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~yG~i~~~~ 56 (489)
T PLN02936 15 GDDSGIPVADAKLEDVTDLLG---------------GALFLPLFKWMNEYGPVYRLA 56 (489)
T ss_pred CCCCCCccHHhHHhhHHHHhc---------------cHHHHHHHHHHHHcCCEEEEc
Confidence 577788899987664 33221 112258899999999988665
No 36
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=50.48 E-value=37 Score=17.82 Aligned_cols=29 Identities=14% Similarity=0.295 Sum_probs=21.0
Q ss_pred hhhhhHHHHhhcCCCCCCCccccCCHHHHHHH
Q 041738 26 IPHRIQRHFQRQGISGPGYRLITGNSTEISRM 57 (96)
Q Consensus 26 ~P~rl~~~l~~QGI~GP~~~~l~Gn~~e~~~~ 57 (96)
.=..|+..|.++||..|+.. .+-.|+.+.
T Consensus 5 s~~~L~~wL~~~gi~~~~~~---~~rd~Ll~~ 33 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPKSA---KTRDELLKL 33 (38)
T ss_pred CHHHHHHHHHHcCCCCCCCC---CCHHHHHHH
Confidence 34568899999999988876 555555443
No 37
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=48.59 E-value=10 Score=25.56 Aligned_cols=14 Identities=36% Similarity=0.897 Sum_probs=13.0
Q ss_pred hHHHHHHhhhCCcc
Q 041738 79 PFYHRWSRVYGKTF 92 (96)
Q Consensus 79 P~~~~w~k~YGk~f 92 (96)
||..+|+++|++.|
T Consensus 15 PFls~WQ~Ry~~Lf 28 (116)
T cd01240 15 PFLSQWQTRYFKLY 28 (116)
T ss_pred HHHHHHHHHHheeC
Confidence 89999999999877
No 38
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=46.84 E-value=41 Score=22.11 Aligned_cols=37 Identities=24% Similarity=0.484 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCccee
Q 041738 51 STEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLY 94 (96)
Q Consensus 51 ~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~ 94 (96)
..|+.+...+....+++ +.|.-.+.+|.++||++-++
T Consensus 57 ~e~i~~~L~~~S~~~lP-------~~v~~~i~~w~~~~g~v~l~ 93 (129)
T PF13625_consen 57 AEEIIEFLERYSKNPLP-------QNVEQSIEDWARRYGRVRLY 93 (129)
T ss_pred HHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHhcCCEEEe
Confidence 55666555444444442 55666889999999998663
No 39
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=45.75 E-value=44 Score=22.03 Aligned_cols=11 Identities=18% Similarity=-0.145 Sum_probs=7.5
Q ss_pred CccccCCHHHH
Q 041738 44 YRLITGNSTEI 54 (96)
Q Consensus 44 ~~~l~Gn~~e~ 54 (96)
-.+.+||+.-.
T Consensus 45 ~~p~YgNL~~~ 55 (107)
T PF15330_consen 45 DDPCYGNLELQ 55 (107)
T ss_pred CCccccccccc
Confidence 35678997654
No 40
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=42.82 E-value=80 Score=19.43 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=10.8
Q ss_pred hhhhHHHHhhcCCC
Q 041738 27 PHRIQRHFQRQGIS 40 (96)
Q Consensus 27 P~rl~~~l~~QGI~ 40 (96)
=..+...|.+||..
T Consensus 37 ~k~i~~yL~e~gy~ 50 (85)
T PF11337_consen 37 EKAIDWYLQEQGYK 50 (85)
T ss_pred HHHHHHHHHHcCCc
Confidence 45667789999985
No 41
>PTZ00200 cysteine proteinase; Provisional
Probab=42.41 E-value=24 Score=28.71 Aligned_cols=17 Identities=6% Similarity=0.282 Sum_probs=13.9
Q ss_pred ccchHHHHHHhhhCCcc
Q 041738 76 RTAPFYHRWSRVYGKTF 92 (96)
Q Consensus 76 ~v~P~~~~w~k~YGk~f 92 (96)
-+.-.|.+|.++|+|.|
T Consensus 121 e~~~~F~~f~~ky~K~Y 137 (448)
T PTZ00200 121 EVYLEFEEFNKKYNRKH 137 (448)
T ss_pred HHHHHHHHHHHHhCCcC
Confidence 34457999999999998
No 42
>KOG4562 consensus Uncharacterized conserved protein (tumor-rejection antigen MAGE in humans) [Function unknown]
Probab=41.37 E-value=48 Score=26.10 Aligned_cols=56 Identities=16% Similarity=0.421 Sum_probs=34.6
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHH----------HHhhhhh-------HHHHhhcCC---CCCCCccccCC--HHH
Q 041738 3 LLIVTVIFVLI-------ISLLKAIHSS----------IWIPHRI-------QRHFQRQGI---SGPGYRLITGN--STE 53 (96)
Q Consensus 3 ~~~~~~~~~~~-------~~~~~~~~~~----------w~~P~rl-------~~~l~~QGI---~GP~~~~l~Gn--~~e 53 (96)
|||+++++++. -.+|.++..+ +-.|+++ +++|.-+-| .+|.|.|++|- ..|
T Consensus 205 lLm~iL~iIf~~Gn~a~Ee~iWe~L~~lGv~~g~~H~ifGeprkLiT~dlVqq~YLeYr~Vp~sdP~~YEFlWGpRA~~E 284 (329)
T KOG4562|consen 205 LLMIILGIIFMKGNCAPEEEIWEVLRRLGVYDGREHSIFGEPRKLLTQDLVQEKYLEYRQVPDSDPPRYEFLWGPRAHAE 284 (329)
T ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHHhcCCCCccccccCChHHHHHHHHHHhhceeeeecCCCCCCceEEeecccchhh
Confidence 67777776665 3477776553 2456666 455655544 45788899995 555
Q ss_pred HHHHH
Q 041738 54 ISRMH 58 (96)
Q Consensus 54 ~~~~~ 58 (96)
..+|.
T Consensus 285 tskmK 289 (329)
T KOG4562|consen 285 TSKMK 289 (329)
T ss_pred HHHHH
Confidence 54443
No 43
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=39.15 E-value=55 Score=25.63 Aligned_cols=16 Identities=25% Similarity=0.549 Sum_probs=14.2
Q ss_pred hhhhhHHHHhhcCCCC
Q 041738 26 IPHRIQRHFQRQGISG 41 (96)
Q Consensus 26 ~P~rl~~~l~~QGI~G 41 (96)
|=.++||..++|||-|
T Consensus 317 rie~lEr~~ek~~VLG 332 (348)
T PF08733_consen 317 RIERLERKEEKEGVLG 332 (348)
T ss_pred HHHHHHHHHHhcCccC
Confidence 5678899999999988
No 44
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=38.38 E-value=28 Score=21.93 Aligned_cols=12 Identities=42% Similarity=0.758 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHH
Q 041738 2 HLLIVTVIFVLI 13 (96)
Q Consensus 2 ~~~~~~~~~~~~ 13 (96)
|++|++++++++
T Consensus 8 ellIIlvIvlll 19 (78)
T PRK00720 8 HWLIVLAVVLLL 19 (78)
T ss_pred HHHHHHHHHHHH
Confidence 667766666554
No 45
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.25 E-value=1.3e+02 Score=25.08 Aligned_cols=15 Identities=27% Similarity=0.607 Sum_probs=13.6
Q ss_pred HHHHHHhhhCCccee
Q 041738 80 FYHRWSRVYGKTFLY 94 (96)
Q Consensus 80 ~~~~w~k~YGk~fl~ 94 (96)
|+.+..+|||.+|.+
T Consensus 56 Fl~~~~~K~GdVFTv 70 (486)
T KOG0684|consen 56 FLRECRKKYGDVFTV 70 (486)
T ss_pred HHHHHHHhcCCeEEE
Confidence 899999999999974
No 46
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=35.77 E-value=29 Score=21.57 Aligned_cols=11 Identities=73% Similarity=0.918 Sum_probs=6.7
Q ss_pred hHHHHHHHHHH
Q 041738 2 HLLIVTVIFVL 12 (96)
Q Consensus 2 ~~~~~~~~~~~ 12 (96)
|++|+++++++
T Consensus 8 elliIl~Ivll 18 (73)
T PRK02958 8 HWLIVLVIVVL 18 (73)
T ss_pred HHHHHHHHHHH
Confidence 56666665555
No 47
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=34.86 E-value=61 Score=21.24 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=28.9
Q ss_pred hhHHHHhhcCCC---CCCCccccCCHHHHHHHHHHhcCCC
Q 041738 29 RIQRHFQRQGIS---GPGYRLITGNSTEISRMHIEALSKP 65 (96)
Q Consensus 29 rl~~~l~~QGI~---GP~~~~l~Gn~~e~~~~~~~a~~~~ 65 (96)
+..+.+++.|++ ||-.+.+=|++.|+....+++...+
T Consensus 25 ~~i~~lk~~glky~~~pm~T~iEg~~del~~~ik~~~Ea~ 64 (100)
T COG0011 25 EAIEILKESGLKYQLGPMGTVIEGELDELMEAVKEAHEAV 64 (100)
T ss_pred HHHHHHHHcCCceeecCcceEEEecHHHHHHHHHHHHHHH
Confidence 345689999996 8999999999999877766655443
No 48
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=34.26 E-value=25 Score=20.78 Aligned_cols=11 Identities=27% Similarity=0.996 Sum_probs=9.5
Q ss_pred hHHHHHHhhhC
Q 041738 79 PFYHRWSRVYG 89 (96)
Q Consensus 79 P~~~~w~k~YG 89 (96)
-.|++|.++||
T Consensus 52 ~~ye~w~~~FG 62 (62)
T PF09336_consen 52 KKYEEWTKEFG 62 (62)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHcC
Confidence 37899999998
No 49
>COG4970 FimT Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.65 E-value=82 Score=22.76 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 041738 2 HLLIVTVIFVLIISLLKAIHSSIWIPHRIQ 31 (96)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~w~~P~rl~ 31 (96)
.|||++|++.++..+.-=--.-|++-.|++
T Consensus 14 ELliviAIlAIla~~A~P~fs~~i~~~rl~ 43 (181)
T COG4970 14 ELLIVLAILAILAVIAAPNFSQWIRSQRLR 43 (181)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 478888886665444432223466666664
No 50
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=32.33 E-value=34 Score=22.54 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=18.0
Q ss_pred hhhhHHHHhhcCCCCCCCccccC
Q 041738 27 PHRIQRHFQRQGISGPGYRLITG 49 (96)
Q Consensus 27 P~rl~~~l~~QGI~GP~~~~l~G 49 (96)
...+.+.|+++||+|---++-.|
T Consensus 25 A~Al~~~L~~~gI~Gk~i~l~T~ 47 (100)
T PF15643_consen 25 ASALKQFLKQAGIPGKIIRLYTG 47 (100)
T ss_pred HHHHHHHHHHCCCCceEEEEEec
Confidence 46788899999999976666554
No 51
>PRK01614 tatE twin arginine translocase protein A; Validated
Probab=31.89 E-value=40 Score=21.60 Aligned_cols=13 Identities=38% Similarity=0.823 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHH
Q 041738 2 HLLIVTVIFVLII 14 (96)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (96)
|++|+++++++++
T Consensus 8 ELLIIlvIvLLLF 20 (85)
T PRK01614 8 KLLVVGILIVLLF 20 (85)
T ss_pred HHHHHHHHHHHHh
Confidence 6777766666543
No 52
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=31.44 E-value=42 Score=21.22 Aligned_cols=11 Identities=64% Similarity=0.963 Sum_probs=6.2
Q ss_pred hHHHHHHHHHH
Q 041738 2 HLLIVTVIFVL 12 (96)
Q Consensus 2 ~~~~~~~~~~~ 12 (96)
|++|+++++++
T Consensus 8 elliIlvivll 18 (81)
T PRK04598 8 QLLIIAVIVVL 18 (81)
T ss_pred HHHHHHHHHHH
Confidence 55666555554
No 53
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=31.31 E-value=43 Score=20.81 Aligned_cols=12 Identities=50% Similarity=0.877 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHH
Q 041738 2 HLLIVTVIFVLI 13 (96)
Q Consensus 2 ~~~~~~~~~~~~ 13 (96)
|++|++++++++
T Consensus 8 elliIl~i~lll 19 (74)
T PRK01833 8 QLLIIVAIIVLL 19 (74)
T ss_pred HHHHHHHHHHHH
Confidence 566666655553
No 54
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=31.27 E-value=16 Score=26.24 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHhhcCCC
Q 041738 21 HSSIWIPHRIQRHFQRQGIS 40 (96)
Q Consensus 21 ~~~w~~P~rl~~~l~~QGI~ 40 (96)
-++-|.+++-||.|++|=+.
T Consensus 63 ERLtWT~~AKER~fK~Qfv~ 82 (171)
T PF04799_consen 63 ERLTWTNKAKERAFKRQFVD 82 (171)
T ss_dssp --------------------
T ss_pred HHHhcCchHHHHHHHHHHHH
Confidence 34559999999999999664
No 55
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=30.80 E-value=44 Score=21.60 Aligned_cols=12 Identities=58% Similarity=0.960 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHH
Q 041738 2 HLLIVTVIFVLI 13 (96)
Q Consensus 2 ~~~~~~~~~~~~ 13 (96)
|+||++++++++
T Consensus 8 eLlIIlvIvLLl 19 (89)
T PRK03554 8 QLLIIAVIVVLL 19 (89)
T ss_pred HHHHHHHHHHHH
Confidence 566666665553
No 56
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=30.76 E-value=16 Score=31.86 Aligned_cols=18 Identities=22% Similarity=0.719 Sum_probs=0.0
Q ss_pred hHHHHhhcCCCCCCCccc
Q 041738 30 IQRHFQRQGISGPGYRLI 47 (96)
Q Consensus 30 l~~~l~~QGI~GP~~~~l 47 (96)
++|.++|+|+.||++.+.
T Consensus 65 v~~~l~k~g~~GPk~~~~ 82 (787)
T PF03115_consen 65 VKRQLRKKGVTGPKPAVS 82 (787)
T ss_dssp ------------------
T ss_pred HhhhhhccCCCCCCcceE
Confidence 456789999999999873
No 57
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=30.47 E-value=48 Score=21.25 Aligned_cols=11 Identities=55% Similarity=0.945 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 041738 3 LLIVTVIFVLI 13 (96)
Q Consensus 3 ~~~~~~~~~~~ 13 (96)
.||++++++++
T Consensus 30 ILivLVIIiLl 40 (85)
T PF10717_consen 30 ILIVLVIIILL 40 (85)
T ss_pred HHHHHHHHHHH
Confidence 44544444443
No 58
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=29.74 E-value=42 Score=20.44 Aligned_cols=11 Identities=45% Similarity=0.791 Sum_probs=6.6
Q ss_pred hHHHHHHHHHH
Q 041738 2 HLLIVTVIFVL 12 (96)
Q Consensus 2 ~~~~~~~~~~~ 12 (96)
|+||+++++++
T Consensus 8 elliIlvI~ll 18 (67)
T PRK03625 8 KLLVVAALVVL 18 (67)
T ss_pred HHHHHHHHHHH
Confidence 56666665555
No 59
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=29.67 E-value=33 Score=15.93 Aligned_cols=9 Identities=44% Similarity=0.851 Sum_probs=4.4
Q ss_pred ChHHHHHHH
Q 041738 1 MHLLIVTVI 9 (96)
Q Consensus 1 ~~~~~~~~~ 9 (96)
|++.|.+++
T Consensus 2 Mk~vIIlvv 10 (19)
T PF13956_consen 2 MKLVIILVV 10 (19)
T ss_pred ceehHHHHH
Confidence 455555443
No 60
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=29.57 E-value=44 Score=21.22 Aligned_cols=12 Identities=42% Similarity=0.758 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHH
Q 041738 2 HLLIVTVIFVLI 13 (96)
Q Consensus 2 ~~~~~~~~~~~~ 13 (96)
|+||++++++++
T Consensus 8 elliIlvV~lll 19 (94)
T COG1826 8 ELLIILVVALLV 19 (94)
T ss_pred HHHHHHHHHHHh
Confidence 566666655553
No 61
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=28.66 E-value=48 Score=21.50 Aligned_cols=12 Identities=33% Similarity=0.836 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHH
Q 041738 2 HLLIVTVIFVLI 13 (96)
Q Consensus 2 ~~~~~~~~~~~~ 13 (96)
|+||++++++++
T Consensus 8 elliIlvIvlll 19 (92)
T PRK00442 8 HWIVILVVVVLV 19 (92)
T ss_pred HHHHHHHHHHHH
Confidence 566666655553
No 62
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=28.51 E-value=50 Score=20.66 Aligned_cols=11 Identities=55% Similarity=0.842 Sum_probs=6.1
Q ss_pred hHHHHHHHHHH
Q 041738 2 HLLIVTVIFVL 12 (96)
Q Consensus 2 ~~~~~~~~~~~ 12 (96)
|++|+++++++
T Consensus 8 ellIIlvIvlL 18 (75)
T PRK04561 8 HWLVVLVIVLL 18 (75)
T ss_pred HHHHHHHHHHH
Confidence 56665555544
No 63
>PHA03240 envelope glycoprotein M; Provisional
Probab=28.32 E-value=87 Score=23.71 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=11.4
Q ss_pred hhhhhHHHHhhcCC
Q 041738 26 IPHRIQRHFQRQGI 39 (96)
Q Consensus 26 ~P~rl~~~l~~QGI 39 (96)
-|.|+..+++.+|-
T Consensus 233 iPQKl~dKw~~~k~ 246 (258)
T PHA03240 233 IPQKLFDKWDLHGS 246 (258)
T ss_pred ccHHHHHHHhhhcc
Confidence 49999888888875
No 64
>PF13276 HTH_21: HTH-like domain
Probab=27.51 E-value=58 Score=18.37 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=15.0
Q ss_pred HhhhhhHHHHhhcCCCCCCC
Q 041738 25 WIPHRIQRHFQRQGISGPGY 44 (96)
Q Consensus 25 ~~P~rl~~~l~~QGI~GP~~ 44 (96)
..-+++.+.|++.||..+..
T Consensus 38 v~~krV~RlM~~~gL~~~~r 57 (60)
T PF13276_consen 38 VSRKRVRRLMREMGLRSKRR 57 (60)
T ss_pred ccHHHHHHHHHHcCCcccCC
Confidence 45678888888888877643
No 65
>PF06884 DUF1264: Protein of unknown function (DUF1264); InterPro: IPR010686 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 200 residues long. Some family members are annotated as putative lipoproteins.
Probab=27.44 E-value=46 Score=23.93 Aligned_cols=16 Identities=31% Similarity=0.711 Sum_probs=13.3
Q ss_pred HHHHHHhhhCCcceec
Q 041738 80 FYHRWSRVYGKTFLYW 95 (96)
Q Consensus 80 ~~~~w~k~YGk~fl~W 95 (96)
...+..+.|||+|-+|
T Consensus 102 ~m~~l~~tYGKt~HtW 117 (171)
T PF06884_consen 102 EMEKLVKTYGKTWHTW 117 (171)
T ss_pred HHHHHHhhhCCeEEec
Confidence 4566788999999998
No 66
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=26.33 E-value=1.7e+02 Score=19.70 Aligned_cols=14 Identities=21% Similarity=0.589 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 041738 5 IVTVIFVLIISLLK 18 (96)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (96)
++++++++++.+++
T Consensus 27 ~~lll~~~~~~~~~ 40 (146)
T PF14316_consen 27 LALLLLLLILLLWR 40 (146)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333443
No 67
>PF01454 MAGE: MAGE family; InterPro: IPR002190 The first mammalian members of the MAGE (melanoma-associated antigen) gene family were originally described as completely silent in normal adult tissues, with the exception of male germ cells and, for some of them, placenta. By contrast, these genes were expressed in various kinds of tumors. However, other members of the family were recently found to be expressed in normal cells, indicating that the family is larger and more disparate than initially expected. MAGE-like genes have also been identified in non-mammalian species, including Drosophila melanogaster (Fruit fly) and Danio rerio (Zebrafish). Although no MAGE homologous sequences have been identified in Caenorhabditis elegans, Saccharomyces cerevisiae (Baker's yeast) or Schizosaccharomyces pombe (Fission yeast), MAGE sequences have been found in several vegetal species, including Arabidopsis thaliana (Mouse-ear cress) []. The only region of homology shared by all of the members of the family is a stretch of about 200 amino acids which has been named the MAGE conserved domain. The MAGE conserved domain is usually located close to the C-terminal, although it can also be found in a more central position in some proteins. The MAGE conserved domain is generally present as a single copy but it is duplicated in some proteins. It has been proposed that the MAGE conserved domain of MAGE-D proteins might interact with p75 neurotrophin or related receptors [].; PDB: 3NW0_B 2WA0_A 1I4F_C.
Probab=26.22 E-value=1.1e+02 Score=21.29 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=19.1
Q ss_pred hhhhHHHHhhcCCCCCCCccccC-CHHHHH
Q 041738 27 PHRIQRHFQRQGISGPGYRLITG-NSTEIS 55 (96)
Q Consensus 27 P~rl~~~l~~QGI~GP~~~~l~G-n~~e~~ 55 (96)
=..|.+.|++-||..-...+.+| |.++..
T Consensus 123 E~~L~~~L~~lgi~~~~~~~~~g~~~~~~i 152 (195)
T PF01454_consen 123 EDDLWKFLRRLGIDEDEKHPILGMDIKKLI 152 (195)
T ss_dssp HHHHHHHHHHTT--TTS-BTTTB--HHHHH
T ss_pred HHHHHHHHHhcCCCccccCccCCCCHHHHH
Confidence 34566789999997447899999 988864
No 68
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=26.10 E-value=1.5e+02 Score=23.58 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=19.7
Q ss_pred HHHHHHHhhhhhHHHHhhcCCCCCCCc
Q 041738 19 AIHSSIWIPHRIQRHFQRQGISGPGYR 45 (96)
Q Consensus 19 ~~~~~w~~P~rl~~~l~~QGI~GP~~~ 45 (96)
+....+..|+.+.+.|+|||.-=|.-+
T Consensus 291 fys~i~~nP~diA~~Lkk~g~~IpGiR 317 (395)
T TIGR02920 291 FFTFVNINPKEISKSFRKSGNYIPGIA 317 (395)
T ss_pred HHHHheECHHHHHHHHHHCCCCccCcC
Confidence 344557799999999999996444333
No 69
>PF11407 RestrictionMunI: Type II restriction enzyme MunI; InterPro: IPR022725 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. Type II restriction enzyme MunI recognises the palindromic sequence C/AATTG. It makes contact with the DNA via the major groove []. ; PDB: 1D02_B.
Probab=25.90 E-value=36 Score=24.90 Aligned_cols=17 Identities=24% Similarity=0.645 Sum_probs=14.0
Q ss_pred hHHHHHHhhhCCcceec
Q 041738 79 PFYHRWSRVYGKTFLYW 95 (96)
Q Consensus 79 P~~~~w~k~YGk~fl~W 95 (96)
.-+.-|-+.|++.|++|
T Consensus 164 REIt~Wf~~y~~nyF~W 180 (202)
T PF11407_consen 164 REITFWFDEYDKNYFMW 180 (202)
T ss_dssp HHHHHHHTT-CCCEEEE
T ss_pred eeeeeehhhcccceEEe
Confidence 46677999999999999
No 70
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.88 E-value=1.7e+02 Score=17.96 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHH
Q 041738 3 LLIVTVIFVLIISLLKA-IHSSI 24 (96)
Q Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~w 24 (96)
.||+++-+++++++-.+ +|.+|
T Consensus 16 VLlvV~g~ll~flvGnyvlY~Ya 38 (69)
T PF04689_consen 16 VLLVVAGLLLVFLVGNYVLYVYA 38 (69)
T ss_pred EeehHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666654 45555
No 71
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=25.65 E-value=1.1e+02 Score=19.41 Aligned_cols=7 Identities=14% Similarity=0.311 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 041738 14 ISLLKAI 20 (96)
Q Consensus 14 ~~~~~~~ 20 (96)
.++|.++
T Consensus 20 IvvW~iv 26 (81)
T PF00558_consen 20 IVVWTIV 26 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 72
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=25.11 E-value=2.5e+02 Score=22.21 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=22.0
Q ss_pred HhhhhhHHHHhhcCCC-CCCCccccCCHHHHHH
Q 041738 25 WIPHRIQRHFQRQGIS-GPGYRLITGNSTEISR 56 (96)
Q Consensus 25 ~~P~rl~~~l~~QGI~-GP~~~~l~Gn~~e~~~ 56 (96)
..+..+.+.|++.||+ |-. ++-+ |..++.+
T Consensus 116 ~t~~~i~~~L~e~Gi~~G~~-k~~i-d~~~ie~ 146 (382)
T TIGR02876 116 ETPYEIRKQLKEMGIKPGVW-KFSV-DVYKLER 146 (382)
T ss_pred CCHHHHHHHHHHcCCCcCee-eCCC-CHHHHHH
Confidence 3799999999999998 543 3333 7777654
No 73
>COG4968 PilE Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.04 E-value=1.9e+02 Score=20.12 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHH
Q 041738 2 HLLIVTVIFVLIISLL 17 (96)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (96)
.|+|+||++.++..+.
T Consensus 12 ELmIvVaIv~ILa~IA 27 (139)
T COG4968 12 ELMIVVAIVGILALIA 27 (139)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3678888877665554
No 74
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=24.34 E-value=31 Score=27.21 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=8.0
Q ss_pred CccccCCHHHH
Q 041738 44 YRLITGNSTEI 54 (96)
Q Consensus 44 ~~~l~Gn~~e~ 54 (96)
-++|+||+++-
T Consensus 3 ~KLFIGNLp~~ 13 (346)
T KOG0109|consen 3 VKLFIGNLPRE 13 (346)
T ss_pred cchhccCCCcc
Confidence 46889998654
No 75
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=24.12 E-value=1.6e+02 Score=18.84 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=25.2
Q ss_pred hHHHHhhcCCC---CCCCccccCCHHHHHHHHHHh
Q 041738 30 IQRHFQRQGIS---GPGYRLITGNSTEISRMHIEA 61 (96)
Q Consensus 30 l~~~l~~QGI~---GP~~~~l~Gn~~e~~~~~~~a 61 (96)
..+.+++.|++ ||-.+-+-|+..|+.+...++
T Consensus 24 ~i~~l~~sGl~y~~~pm~T~IEGe~dev~~~i~~~ 58 (97)
T TIGR00106 24 AIEVLKESGLKYELHPMGTLIEGDLDELFEAIKAI 58 (97)
T ss_pred HHHHHHHcCCCeEecCCccEEecCHHHHHHHHHHH
Confidence 44678889996 899999999999987665544
No 76
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=23.39 E-value=40 Score=25.60 Aligned_cols=36 Identities=31% Similarity=0.502 Sum_probs=23.3
Q ss_pred cCCCC-CCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccch
Q 041738 37 QGISG-PGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAP 79 (96)
Q Consensus 37 QGI~G-P~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P 79 (96)
|-+.| +.|.+++||-.|+.. .||++.+|-|+..+.|
T Consensus 139 ~~VdG~~~P~~~~~Ne~ei~~-------~~m~gtdg~~attv~P 175 (264)
T COG3257 139 QPVEGVQAPELVSGNESEIEP-------SPMEGTDGVIATTVLP 175 (264)
T ss_pred eeecCccCCcceecChhhCCC-------CCCCCCCCeEEEeeCc
Confidence 34555 377889999888754 5665555555555544
No 77
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=23.33 E-value=2.2e+02 Score=22.84 Aligned_cols=23 Identities=9% Similarity=-0.010 Sum_probs=18.3
Q ss_pred HHHHHHHHhhhhhHHHHhhcCCC
Q 041738 18 KAIHSSIWIPHRIQRHFQRQGIS 40 (96)
Q Consensus 18 ~~~~~~w~~P~rl~~~l~~QGI~ 40 (96)
.+....+..|+.+.+.|+|||.-
T Consensus 297 ~fys~i~~nP~diAe~lkk~g~~ 319 (404)
T PRK12417 297 YFFSFVNINTKQIAKDMLKSGNY 319 (404)
T ss_pred HHHHHHhcCHHHHHHHHHHCCCc
Confidence 34455677999999999999853
No 78
>PF06842 DUF1242: Protein of unknown function (DUF1242); InterPro: IPR009653 This family consists of a number of eukaryotic proteins of around 72 residues in length. The function of this family is unknown.
Probab=23.12 E-value=56 Score=17.58 Aligned_cols=15 Identities=27% Similarity=0.598 Sum_probs=8.9
Q ss_pred hhhhHHHHhhcCCCCC
Q 041738 27 PHRIQRHFQRQGISGP 42 (96)
Q Consensus 27 P~rl~~~l~~QGI~GP 42 (96)
|.-+++ =++.|+.|.
T Consensus 20 P~l~dr-~kk~G~~G~ 34 (36)
T PF06842_consen 20 PSLLDR-NKKTGFRGV 34 (36)
T ss_pred cccccc-CCCcccccc
Confidence 666555 223788774
No 79
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=23.07 E-value=89 Score=18.76 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=14.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Q 041738 1 MHLLIVTVIFVLIISLLKAIHSSI 24 (96)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~w 24 (96)
|.++|+++.+.+++.+.+.++...
T Consensus 1 ~Ki~iv~lll~ii~sL~saL~~l~ 24 (63)
T PF11137_consen 1 MKILIVLLLLAIIASLFSALFFLV 24 (63)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666666655443
No 80
>TIGR03746 conj_TIGR03746 integrating conjugative element protein, PFL_4703 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. The function is unknown.
Probab=22.85 E-value=1.1e+02 Score=22.56 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHH
Q 041738 2 HLLIVTVIFVLIISLLKAIHSSIWI-PHRIQR 32 (96)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~w~~-P~rl~~ 32 (96)
|.+-+-+++.+++.++-.+...|++ |++++-
T Consensus 11 hi~tLr~~~~~L~~i~~~l~~gw~~aP~~lti 42 (202)
T TIGR03746 11 HILTLRIAIGLLALILLALWFGWRTAPKDLTI 42 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCccEE
Confidence 4444444444444444444555664 988754
No 81
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=22.50 E-value=72 Score=17.78 Aligned_cols=13 Identities=8% Similarity=0.432 Sum_probs=10.1
Q ss_pred hhhHHHHhhcCCC
Q 041738 28 HRIQRHFQRQGIS 40 (96)
Q Consensus 28 ~rl~~~l~~QGI~ 40 (96)
.-|++.|++.|++
T Consensus 9 ~eL~~~L~~~G~~ 21 (44)
T smart00540 9 AELRAELKQYGLP 21 (44)
T ss_pred HHHHHHHHHcCCC
Confidence 3467889999985
No 82
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=22.15 E-value=57 Score=24.66 Aligned_cols=33 Identities=30% Similarity=0.444 Sum_probs=27.7
Q ss_pred HHHhcCCCCCCCCCccccccchHHHHHHhhhCCcc
Q 041738 58 HIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTF 92 (96)
Q Consensus 58 ~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~f 92 (96)
++.|.|.||+ +|++-=.+.|.--.|++-|.+-+
T Consensus 23 RQRAHsNP~s--Dh~l~yPvsP~~mDWS~~yp~f~ 55 (249)
T KOG3115|consen 23 RQRAHSNPLS--DHTLEYPVSPQEMDWSKYYPDFR 55 (249)
T ss_pred HHHhhcCCCc--cCcccCCCChHhCcHHHhhhhhh
Confidence 6788999984 79998889999999999997643
No 83
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=22.14 E-value=2.2e+02 Score=18.12 Aligned_cols=12 Identities=8% Similarity=0.346 Sum_probs=6.0
Q ss_pred HHHHhhhhhHHH
Q 041738 22 SSIWIPHRIQRH 33 (96)
Q Consensus 22 ~~w~~P~rl~~~ 33 (96)
.+||+-.++++.
T Consensus 20 y~~~k~~ka~~~ 31 (87)
T PF10883_consen 20 YLWWKVKKAKKQ 31 (87)
T ss_pred HHHHHHHHHHHH
Confidence 345555554443
No 84
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=21.83 E-value=1.6e+02 Score=17.58 Aligned_cols=28 Identities=21% Similarity=0.429 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhhhhHHHHhhcCCCCCC
Q 041738 16 LLKAIHSSIWIPHRIQRHFQRQGISGPG 43 (96)
Q Consensus 16 ~~~~~~~~w~~P~rl~~~l~~QGI~GP~ 43 (96)
+-|-+..-+=|..|+-..|.+.||-||+
T Consensus 25 lQR~~~IGynrAariid~lE~~GiV~p~ 52 (63)
T smart00843 25 LQRRLRIGYNRAARLIDQLEEEGIVGPA 52 (63)
T ss_pred HHHHHhcchhHHHHHHHHHHHCcCCCCC
Confidence 3444444556788888899999999885
No 85
>COG3316 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=21.54 E-value=60 Score=24.13 Aligned_cols=13 Identities=38% Similarity=0.905 Sum_probs=10.4
Q ss_pred HHHHHHhhhCCcc
Q 041738 80 FYHRWSRVYGKTF 92 (96)
Q Consensus 80 ~~~~w~k~YGk~f 92 (96)
-.|.|.++||+.+
T Consensus 46 Ti~rwv~k~~~~~ 58 (215)
T COG3316 46 TIHRWVQKYGPLL 58 (215)
T ss_pred HHHHHHHHHhHHH
Confidence 6799999998654
No 86
>PF13072 DUF3936: Protein of unknown function (DUF3936)
Probab=21.18 E-value=93 Score=16.99 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=13.2
Q ss_pred CCCCccccCCHHHHHHHH
Q 041738 41 GPGYRLITGNSTEISRMH 58 (96)
Q Consensus 41 GP~~~~l~Gn~~e~~~~~ 58 (96)
+|..-.++|...|++.+.
T Consensus 6 ~~~~i~lvGKAWeIr~~L 23 (38)
T PF13072_consen 6 HENGIILVGKAWEIRAKL 23 (38)
T ss_pred cCCeEEEEehHHHHHHHH
Confidence 455667889999997643
No 87
>CHL00038 psbL photosystem II protein L
Probab=20.61 E-value=95 Score=16.90 Aligned_cols=11 Identities=27% Similarity=0.461 Sum_probs=6.3
Q ss_pred HHHHHHHHHHH
Q 041738 3 LLIVTVIFVLI 13 (96)
Q Consensus 3 ~~~~~~~~~~~ 13 (96)
|||++.++++.
T Consensus 23 Llifvl~vlfs 33 (38)
T CHL00038 23 LLIFVLAVLFS 33 (38)
T ss_pred HHHHHHHHHHH
Confidence 45666665553
No 88
>PRK09204 secY preprotein translocase subunit SecY; Reviewed
Probab=20.30 E-value=2.7e+02 Score=22.40 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=15.1
Q ss_pred HhhhhhHHHHhhcCCCCC
Q 041738 25 WIPHRIQRHFQRQGISGP 42 (96)
Q Consensus 25 ~~P~rl~~~l~~QGI~GP 42 (96)
..|+.+.+.|+|||.-=|
T Consensus 330 ~~p~~iAe~l~k~g~~Ip 347 (426)
T PRK09204 330 FNPEEIAENLKKSGGFIP 347 (426)
T ss_pred cCHHHHHHHHHHCCCccc
Confidence 689999999999986433
Done!