Query 041738
Match_columns 96
No_of_seqs 111 out of 466
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 17:21:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041738.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041738hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tqna_ a.104.1.1 (A:) Mammali 97.5 2.9E-05 2.1E-09 55.6 4.0 45 32-95 4-48 (472)
2 d2ij2a1 a.104.1.1 (A:3-455) Cy 96.0 0.00094 6.8E-08 47.9 1.3 41 37-95 1-41 (453)
3 d3czha1 a.104.1.1 (A:40-502) V 95.4 0.005 3.7E-07 42.9 3.3 40 40-95 2-41 (463)
4 d1r9oa_ a.104.1.1 (A:) Mammali 95.2 0.0017 1.3E-07 45.7 0.2 39 40-96 6-44 (467)
5 d1po5a_ a.104.1.1 (A:) Mammali 93.9 0.0065 4.8E-07 42.8 0.7 39 39-95 4-42 (465)
6 d2ciba1 a.104.1.1 (A:5-449) Cy 91.4 0.038 2.8E-06 38.9 1.9 37 40-95 4-40 (445)
7 d1n97a_ a.104.1.1 (A:) Cyp175a 46.0 3.8 0.00028 27.9 1.5 17 78-95 21-37 (385)
8 d1ulza3 d.142.1.2 (A:115-328) 33.5 27 0.002 21.6 4.2 32 29-60 3-35 (214)
9 d2pila_ d.24.1.1 (A:) Pilin Gc 30.0 44 0.0032 18.7 5.2 15 2-16 5-19 (158)
10 d2odgc1 a.140.1.1 (C:2-47) Inn 21.0 26 0.0019 17.8 1.8 14 29-42 10-24 (46)
No 1
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.54 E-value=2.9e-05 Score=55.63 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=35.7
Q ss_pred HHHhhcCCCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceec
Q 041738 32 RHFQRQGISGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYW 95 (96)
Q Consensus 32 ~~l~~QGI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W 95 (96)
..++|.||+||++-+++||+.++.+ . ..-++.+|.++||++|-+|
T Consensus 4 ~~~~~~~iPGP~~~P~iG~~~~~~~-------~------------~~~~~~~~~~kyG~i~~~~ 48 (472)
T d1tqna_ 4 GLFKKLGIPGPTPLPFLGNILSYHK-------G------------FCMFDMECHKKYGKVWGFY 48 (472)
T ss_dssp THHHHTTCCCCCCBTTTBTGGGGGG-------C------------HHHHHHHHHHHHCSEEEEE
T ss_pred cchhhcCCCCCCCcCceeEHHHhhC-------C------------HHHHHHHHHHHhCCEEEEE
Confidence 3688999999999999999876632 1 1137889999999998776
No 2
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus megaterium [TaxId: 1404]}
Probab=95.98 E-value=0.00094 Score=47.87 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=30.6
Q ss_pred cCCCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceec
Q 041738 37 QGISGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYW 95 (96)
Q Consensus 37 QGI~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W 95 (96)
+.|+||++-+++||+.++.+ .+ | .-++.+|.++||++|-+|
T Consensus 1 r~iPGP~~~p~lG~l~~l~~--------------~~--~--~~~~~~~~~kyG~if~~~ 41 (453)
T d2ij2a1 1 KEMPQPKTFGELKNLPLLNT--------------DK--P--VQALMKIADELGEIFKFE 41 (453)
T ss_dssp CCCCCCCCCGGGTTGGGGCS--------------SC--H--HHHHHHHHHHHCSEEEEE
T ss_pred CCCccCCCcchhhCHHHhCC--------------CC--H--HHHHHHHHHHhCCEEEEE
Confidence 46899999999999855411 11 1 247889999999998776
No 3
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.42 E-value=0.005 Score=42.87 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=29.6
Q ss_pred CCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceec
Q 041738 40 SGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYW 95 (96)
Q Consensus 40 ~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W 95 (96)
+||+.-+++||+.++.+- . .+ +. -+++++.++||++|-+|
T Consensus 2 PGP~~~P~iG~~~~~~~~------~------~~--~~--~~~~~~~~kyG~if~~~ 41 (463)
T d3czha1 2 PGPPGLPFIGNIYSLAAS------S------EL--PH--VYMRKQSQVYGEIFSLD 41 (463)
T ss_dssp CCCCCBTTTBHHHHHHHC------S------SC--HH--HHHHHHHHHHCSEEEEE
T ss_pred cCCCCcCccccHHHhhCC------C------Cc--HH--HHHHHHHHHhCCEEEEE
Confidence 799988999999887541 0 00 11 27899999999998765
No 4
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.19 E-value=0.0017 Score=45.73 Aligned_cols=39 Identities=31% Similarity=0.514 Sum_probs=23.8
Q ss_pred CCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceecC
Q 041738 40 SGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYWF 96 (96)
Q Consensus 40 ~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W~ 96 (96)
+||++-+++||+.++.. +| ...++.+|.++||++|-+|.
T Consensus 6 PGP~~~P~lG~~~~l~~--------------~~----~~~~~~~~~~kyG~i~~~~~ 44 (467)
T d1r9oa_ 6 PGPTPLPVIGNILQIGI--------------KD----ISKSLTNLSKVYGPVFTLYF 44 (467)
T ss_dssp CCSSSCC-----CCBCH--------------HH----HHHHHHHHHHHHCSEEEEES
T ss_pred cCCCCCCccccHHHhCC--------------cC----HHHHHHHHHHHhCCEEEEEE
Confidence 59999999999855422 11 12368899999999987763
No 5
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=93.92 E-value=0.0065 Score=42.81 Aligned_cols=39 Identities=23% Similarity=0.401 Sum_probs=28.6
Q ss_pred CCCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceec
Q 041738 39 ISGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYW 95 (96)
Q Consensus 39 I~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W 95 (96)
.+||++-+++||+.++.+ +| ..-++.++.++||++|-+|
T Consensus 4 pPgP~~~P~lG~~~~~~~--------------~~----~~~~~~~~~~kyG~vf~~~ 42 (465)
T d1po5a_ 4 PPGPSPLPVLGNLLQMDR--------------KG----LLRSFLRLREKYGDVFTVY 42 (465)
T ss_dssp CCCSCCBTTTBTGGGCCT--------------TC----HHHHHHHHHHHHCSEEEEE
T ss_pred CCCCCCcCccccHHHhcC--------------cC----HHHHHHHHHHHhCCEEEEE
Confidence 479998889999855421 11 1247889999999998776
No 6
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol demethylase (cyp51) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=91.39 E-value=0.038 Score=38.90 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=28.8
Q ss_pred CCCCCccccCCHHHHHHHHHHhcCCCCCCCCCccccccchHHHHHHhhhCCcceec
Q 041738 40 SGPGYRLITGNSTEISRMHIEALSKPISPVDHDILHRTAPFYHRWSRVYGKTFLYW 95 (96)
Q Consensus 40 ~GP~~~~l~Gn~~e~~~~~~~a~~~~~~~~~hdi~p~v~P~~~~w~k~YGk~fl~W 95 (96)
+||..-+++||..++.+ . | ..++.++.++||++|-+|
T Consensus 4 ~~p~~~P~iG~~~~f~~-------d----------~--~~f~~~~~~kyG~if~~~ 40 (445)
T d2ciba1 4 RVSGGHDEHGHLEEFRT-------D----------P--IGLMQRVRDELGDVGTFQ 40 (445)
T ss_dssp BCSCCCBTTBTHHHHTT-------C----------H--HHHHHHHHHHHCSEEEEE
T ss_pred CCCCCcCcCcCHHHHhH-------C----------H--HHHHHHHHHHHCCEEEEE
Confidence 48889999999988733 1 1 148899999999998665
No 7
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
Probab=45.99 E-value=3.8 Score=27.89 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=14.3
Q ss_pred chHHHHHHhhhCCcceec
Q 041738 78 APFYHRWSRVYGKTFLYW 95 (96)
Q Consensus 78 ~P~~~~w~k~YGk~fl~W 95 (96)
.+++.+|.++||.+| .|
T Consensus 21 ~~~~~~~~~kyg~v~-~~ 37 (385)
T d1n97a_ 21 LAVLLAWGRAHPRLF-LP 37 (385)
T ss_dssp HHHHHHHHHHCSEEE-EC
T ss_pred HHHHHHHHHHCCCEE-EE
Confidence 368999999999998 44
No 8
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]}
Probab=33.48 E-value=27 Score=21.61 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=23.5
Q ss_pred hhHHHHhhcCCCCCC-CccccCCHHHHHHHHHH
Q 041738 29 RIQRHFQRQGISGPG-YRLITGNSTEISRMHIE 60 (96)
Q Consensus 29 rl~~~l~~QGI~GP~-~~~l~Gn~~e~~~~~~~ 60 (96)
+.++.|++.||+-+| +...+.|..|..+..++
T Consensus 3 ~~k~~~~~aGvP~~p~~~~~v~s~~ea~~~~~~ 35 (214)
T d1ulza3 3 RSKEVMKKAGVPVVPGSDGVLKSLEEAKALARE 35 (214)
T ss_dssp HHHHHHHHTTCCBCCBCSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCCCcCCCCCCHHHHHHHHHH
Confidence 456789999998644 44678999998775543
No 9
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=30.04 E-value=44 Score=18.71 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHH
Q 041738 2 HLLIVTVIFVLIISL 16 (96)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (96)
.||||++++.++..+
T Consensus 5 ELlVViaIIgILaai 19 (158)
T d2pila_ 5 ELMIVIAIVGILAAV 19 (158)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 367777776655443
No 10
>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.97 E-value=26 Score=17.77 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=10.3
Q ss_pred hhHHHHhhcCCC-CC
Q 041738 29 RIQRHFQRQGIS-GP 42 (96)
Q Consensus 29 rl~~~l~~QGI~-GP 42 (96)
-|.+.|++-||+ ||
T Consensus 10 El~~lL~~y~I~HGP 24 (46)
T d2odgc1 10 ELTTLLRRYNIPHGP 24 (46)
T ss_dssp HHHHHHHHTTCCCCC
T ss_pred HHHHHHHHhCCCCCC
Confidence 356788888996 64
Done!